AlfalfaGEDB | MS.gene46015

M. sativa cultivar XinJiangDaYe / MS.gene46015

KEGG: K03009
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF03604.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46015.t1	XP_013449057.1	100	51	0	0	1	51	1	51	4.60E-22	112.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46015.t1	Q9FLM8	88.2	51	6	0	1	51	1	51	3.9e-22	104.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46015.t1	I3SLU4	100.0	51	0	0	1	51	1	51	3.3e-22	112.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46015.t1	MTR_7g066240	100.000	51	0	0	1	51	1	51	9.17e-33	106

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46015.t1	AT5G41010	88.235	51	6	0	1	51	1	51	1.24e-29	98.6
MS.gene46015.t1	AT1G53690	73.171	41	10	1	2	41	10	50	3.67e-15	62.4
MS.gene46015.t1	AT1G53690	73.171	41	10	1	2	41	10	50	3.67e-15	62.4

Find 11 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCTTAACGTGCTTCATAC+TGG	0.389614	7.2:+43668999	None:intergenic
GACGAGTGCGCTTCTTGTAA+AGG	0.448256	7.2:+43669029	None:intergenic
GTCGAGAATACTTTGAAGTC+TGG	0.458410	7.2:-43669088	MS.gene46015:CDS
CAGAGGTAACTCACAGGCTC+AGG	0.525994	7.2:+43669124	None:intergenic
AGTTACCTCTGTGGTGATTG+TGG	0.528859	7.2:-43669112	MS.gene46015:CDS
TAACTCACAGGCTCAGGCAG+AGG	0.539104	7.2:+43669130	None:intergenic
GGATTCTGTAACCACAGTCA+CGG	0.652403	7.2:+43669050	None:intergenic
GTTATTCAGTGCCGTGACTG+TGG	0.657037	7.2:-43669061	MS.gene46015:CDS
TCACCACAGAGGTAACTCAC+AGG	0.674710	7.2:+43669118	None:intergenic
GAGCCTGTGAGTTACCTCTG+TGG	0.764675	7.2:-43669121	MS.gene46015:CDS
CGACTCCACAATCACCACAG+AGG	0.769265	7.2:+43669107	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTCGAGAATACTTTGAAGTC+TGG	-	chr7.2:43669051-43669070	MS.gene46015:CDS	40.0%
	AGTTACCTCTGTGGTGATTG+TGG	-	chr7.2:43669027-43669046	MS.gene46015:CDS	45.0%
	GGATTCTGTAACCACAGTCA+CGG	+	chr7.2:43669092-43669111	None:intergenic	45.0%
	GACGAGTGCGCTTCTTGTAA+AGG	+	chr7.2:43669113-43669132	None:intergenic	50.0%
	GTTATTCAGTGCCGTGACTG+TGG	-	chr7.2:43669078-43669097	MS.gene46015:CDS	50.0%
	TCACCACAGAGGTAACTCAC+AGG	+	chr7.2:43669024-43669043	None:intergenic	50.0%
	CAGAGGTAACTCACAGGCTC+AGG	+	chr7.2:43669018-43669037	None:intergenic	55.0%
	CGACTCCACAATCACCACAG+AGG	+	chr7.2:43669035-43669054	None:intergenic	55.0%
	GAGCCTGTGAGTTACCTCTG+TGG	-	chr7.2:43669018-43669037	MS.gene46015:CDS	55.0%
	TAACTCACAGGCTCAGGCAG+AGG	+	chr7.2:43669012-43669031	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	43669003	43669158	43669003	ID=MS.gene46015
chr7.2	mRNA	43669003	43669158	43669003	ID=MS.gene46015.t1;Parent=MS.gene46015
chr7.2	exon	43669003	43669158	43669003	ID=MS.gene46015.t1.exon1;Parent=MS.gene46015.t1
chr7.2	CDS	43669003	43669158	43669003	ID=cds.MS.gene46015.t1;Parent=MS.gene46015.t1

Gene Sequence	>MS.gene46015 ATGGATCCTCTGCCTGAGCCTGTGAGTTACCTCTGTGGTGATTGTGGAGTCGAGAATACTTTGAAGTCTGGTGACGTTATTCAGTGCCGTGACTGTGGTTACAGAATCCTTTACAAGAAGCGCACTCGTCGCATTGTCCAGTATGAAGCACGTTAA
Protein sequence	>MS.gene46015.t1 MDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR