Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56414.t1 | XP_003607895.1 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 2.10E-173 | 618.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56414.t1 | Q39211 | 81.2 | 319 | 59 | 1 | 1 | 318 | 1 | 319 | 3.9e-144 | 512.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56414.t1 | Q2MGQ5 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 1.5e-173 | 618.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene56414 | 0.820711 | 5.94E-53 | -1.69E-46 |
| MS.gene049159 | MS.gene56414 | 0.818701 | 1.71E-52 | -1.69E-46 |
| MS.gene049190 | MS.gene56414 | 0.833701 | 4.58E-56 | -1.69E-46 |
| MS.gene049207 | MS.gene56414 | 0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene049255 | MS.gene56414 | 0.866659 | 2.43E-65 | -1.69E-46 |
| MS.gene049340 | MS.gene56414 | 0.804935 | 1.70E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene56414 | 0.849195 | 3.78E-60 | -1.69E-46 |
| MS.gene049350 | MS.gene56414 | 0.818619 | 1.78E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene56414 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene049672 | MS.gene56414 | 0.830572 | 2.72E-55 | -1.69E-46 |
| MS.gene049821 | MS.gene56414 | 0.813535 | 2.44E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene56414 | 0.860605 | 1.84E-63 | -1.69E-46 |
| MS.gene049825 | MS.gene56414 | 0.844415 | 7.67E-59 | -1.69E-46 |
| MS.gene049850 | MS.gene56414 | 0.81504 | 1.13E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene56414 | 0.852563 | 4.25E-61 | -1.69E-46 |
| MS.gene050020 | MS.gene56414 | 0.810438 | 1.15E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene56414 | 0.82825 | 9.98E-55 | -1.69E-46 |
| MS.gene050427 | MS.gene56414 | 0.803271 | 3.77E-49 | -1.69E-46 |
| MS.gene05045 | MS.gene56414 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene56414 | 0.826832 | 2.18E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene56414 | 0.820859 | 5.49E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene56414 | 0.804191 | 2.43E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene56414 | 0.882781 | 7.81E-71 | -1.69E-46 |
| MS.gene050807 | MS.gene56414 | 0.81594 | 7.14E-52 | -1.69E-46 |
| MS.gene050877 | MS.gene56414 | 0.831527 | 1.59E-55 | -1.69E-46 |
| MS.gene050901 | MS.gene56414 | 0.823478 | 1.36E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene56414 | 0.816998 | 4.14E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene56414 | 0.816111 | 6.54E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene56414 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene56414 | 0.855965 | 4.43E-62 | -1.69E-46 |
| MS.gene05134 | MS.gene56414 | 0.857169 | 1.96E-62 | -1.69E-46 |
| MS.gene051363 | MS.gene56414 | 0.808652 | 2.79E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene56414 | 0.843025 | 1.81E-58 | -1.69E-46 |
| MS.gene051700 | MS.gene56414 | 0.826674 | 2.38E-54 | -1.69E-46 |
| MS.gene051701 | MS.gene56414 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene56414 | 0.841977 | 3.43E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene56414 | 0.836004 | 1.21E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene56414 | 0.847788 | 9.26E-60 | -1.69E-46 |
| MS.gene051791 | MS.gene56414 | 0.811647 | 6.31E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene56414 | 0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene56414 | 0.815254 | 1.02E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene56414 | 0.813874 | 2.05E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene56414 | 0.847517 | 1.10E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene56414 | 0.813316 | 2.72E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene56414 | 0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene56414 | 0.824482 | 7.88E-54 | -1.69E-46 |
| MS.gene052879 | MS.gene56414 | 0.836946 | 6.94E-57 | -1.69E-46 |
| MS.gene052880 | MS.gene56414 | 0.815732 | 7.95E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene56414 | 0.839554 | 1.48E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene56414 | 0.81538 | 9.52E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene56414 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene053080 | MS.gene56414 | 0.818782 | 1.64E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene56414 | 0.868052 | 8.70E-66 | -1.69E-46 |
| MS.gene053144 | MS.gene56414 | 0.816093 | 6.61E-52 | -1.69E-46 |
| MS.gene053195 | MS.gene56414 | 0.803575 | 3.27E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene56414 | 0.898947 | 3.22E-77 | -1.69E-46 |
| MS.gene053542 | MS.gene56414 | 0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene053563 | MS.gene56414 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene56414 | 0.815235 | 1.03E-51 | -1.69E-46 |
| MS.gene053597 | MS.gene56414 | 0.803632 | 3.18E-49 | -1.69E-46 |
| MS.gene053599 | MS.gene56414 | 0.829629 | 4.62E-55 | -1.69E-46 |
| MS.gene05364 | MS.gene56414 | 0.876377 | 1.47E-68 | -1.69E-46 |
| MS.gene053931 | MS.gene56414 | 0.822835 | 1.91E-53 | -1.69E-46 |
| MS.gene053995 | MS.gene56414 | 0.816703 | 4.82E-52 | -1.69E-46 |
| MS.gene054142 | MS.gene56414 | 0.817521 | 3.16E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene56414 | 0.8064 | 8.38E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene56414 | 0.833611 | 4.83E-56 | -1.69E-46 |
| MS.gene055162 | MS.gene56414 | 0.826375 | 2.81E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene56414 | 0.817371 | 3.41E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene56414 | 0.812315 | 4.51E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene56414 | 0.828548 | 8.46E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene56414 | 0.811234 | 7.75E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene56414 | 0.880607 | 4.77E-70 | -1.69E-46 |
| MS.gene055513 | MS.gene56414 | 0.81244 | 4.23E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene56414 | 0.80167 | 8.07E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene56414 | -0.835855 | 1.32E-56 | -1.69E-46 |
| MS.gene055694 | MS.gene56414 | 0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene56414 | 0.828621 | 8.12E-55 | -1.69E-46 |
| MS.gene055808 | MS.gene56414 | 0.840108 | 1.06E-57 | -1.69E-46 |
| MS.gene055841 | MS.gene56414 | 0.802532 | 5.37E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene56414 | 0.8302 | 3.36E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene56414 | -0.819454 | 1.15E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene56414 | 0.844722 | 6.34E-59 | -1.69E-46 |
| MS.gene056308 | MS.gene56414 | 0.813493 | 2.49E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene56414 | 0.840045 | 1.10E-57 | -1.69E-46 |
| MS.gene056553 | MS.gene56414 | 0.810976 | 8.82E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene56414 | 0.823554 | 1.30E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene56414 | 0.816273 | 6.02E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene56414 | 0.82175 | 3.42E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene56414 | 0.804108 | 2.53E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene56414 | 0.809889 | 1.51E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene56414 | 0.822584 | 2.19E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene56414 | 0.84811 | 7.55E-60 | -1.69E-46 |
| MS.gene057694 | MS.gene56414 | 0.8255 | 4.53E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene56414 | 0.871354 | 7.28E-67 | -1.69E-46 |
| MS.gene057915 | MS.gene56414 | 0.804959 | 1.68E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene56414 | 0.815837 | 7.53E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene56414 | 0.835005 | 2.16E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene56414 | 0.81971 | 1.01E-52 | -1.69E-46 |
| MS.gene058976 | MS.gene56414 | 0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene56414 | 0.804605 | 1.99E-49 | -1.69E-46 |
| MS.gene059151 | MS.gene56414 | 0.816454 | 5.48E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene56414 | 0.819264 | 1.27E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene56414 | 0.807907 | 4.02E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene56414 | 0.898939 | 3.24E-77 | -1.69E-46 |
| MS.gene059842 | MS.gene56414 | 0.822915 | 1.83E-53 | -1.69E-46 |
| MS.gene059935 | MS.gene56414 | 0.815173 | 1.06E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene56414 | 0.818695 | 1.71E-52 | -1.69E-46 |
| MS.gene060194 | MS.gene56414 | 0.833907 | 4.07E-56 | -1.69E-46 |
| MS.gene060355 | MS.gene56414 | 0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene060365 | MS.gene56414 | 0.811091 | 8.32E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene56414 | 0.871021 | 9.39E-67 | -1.69E-46 |
| MS.gene060587 | MS.gene56414 | 0.858016 | 1.10E-62 | -1.69E-46 |
| MS.gene060763 | MS.gene56414 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene56414 | 0.808934 | 2.43E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene56414 | 0.803057 | 4.18E-49 | -1.69E-46 |
| MS.gene061176 | MS.gene56414 | 0.812075 | 5.09E-51 | -1.69E-46 |
| MS.gene061177 | MS.gene56414 | 0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene061178 | MS.gene56414 | 0.811814 | 5.80E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56414 | MS.gene24205 | PPI |
| MS.gene56414 | MS.gene46015 | PPI |
| MS.gene56414 | MS.gene022098 | PPI |
| MS.gene56414 | MS.gene063673 | PPI |
| MS.gene43180 | MS.gene56414 | PPI |
| MS.gene56414 | MS.gene27287 | PPI |
| MS.gene56414 | MS.gene95440 | PPI |
| MS.gene56414 | MS.gene27025 | PPI |
| MS.gene56414 | MS.gene67685 | PPI |
| MS.gene56414 | MS.gene94781 | PPI |
| MS.gene56414 | MS.gene56067 | PPI |
| MS.gene56414 | MS.gene67503 | PPI |
| MS.gene56414 | MS.gene64820 | PPI |
| MS.gene84578 | MS.gene56414 | PPI |
| MS.gene56414 | MS.gene006911 | PPI |
| MS.gene56414 | MS.gene90747 | PPI |
| MS.gene56414 | MS.gene97308 | PPI |
| MS.gene56414 | MS.gene055112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56414.t1 | MTR_4g084150 | 99.057 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 0.0 | 648 |
| MS.gene56414.t1 | MTR_3g060690 | 31.861 | 317 | 175 | 8 | 11 | 295 | 87 | 394 | 3.79e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56414.t1 | AT2G15430 | 81.562 | 320 | 56 | 2 | 1 | 318 | 1 | 319 | 0.0 | 536 |
| MS.gene56414.t1 | AT2G15400 | 75.235 | 319 | 78 | 1 | 1 | 318 | 1 | 319 | 2.69e-177 | 493 |
| MS.gene56414.t1 | AT2G15430 | 77.350 | 234 | 50 | 2 | 1 | 232 | 1 | 233 | 2.54e-132 | 376 |
| MS.gene56414.t1 | AT2G15430 | 76.763 | 241 | 53 | 2 | 1 | 239 | 1 | 240 | 3.29e-132 | 376 |
| MS.gene56414.t1 | AT2G15400 | 72.174 | 230 | 63 | 1 | 1 | 229 | 1 | 230 | 1.01e-117 | 339 |
| MS.gene56414.t1 | AT1G60620 | 30.868 | 311 | 177 | 7 | 11 | 295 | 17 | 315 | 1.33e-33 | 126 |
| MS.gene56414.t1 | AT1G60620 | 30.868 | 311 | 177 | 7 | 11 | 295 | 82 | 380 | 4.89e-33 | 125 |
| MS.gene56414.t1 | AT1G60850 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.24e-33 | 125 |
| MS.gene56414.t1 | AT1G60850 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.24e-33 | 125 |
| MS.gene56414.t1 | AT1G60850 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.24e-33 | 125 |
| MS.gene56414.t1 | AT1G60850 | 34.906 | 212 | 106 | 5 | 11 | 196 | 75 | 280 | 8.55e-26 | 104 |
Find 74 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATCAATGAAGATTTAA+TGG | 0.210874 | 4.4:+28719737 | MS.gene56414:CDS |
| GTTCAGTTGAGTTTCATCTT+AGG | 0.271624 | 4.4:+28718436 | MS.gene56414:CDS |
| TTTGACACTTGAGGAGAAAA+AGG | 0.302144 | 4.4:+28719764 | MS.gene56414:CDS |
| GTTACTCCGGTGGATGTTCC+TGG | 0.334842 | 4.4:+28718525 | MS.gene56414:CDS |
| CCGGAGCGCGTTGGCGACGC+TGG | 0.342082 | 4.4:-28718223 | None:intergenic |
| CTTCTGCTTGAGAATTTCAA+TGG | 0.357410 | 4.4:-28721323 | None:intergenic |
| CCAGCGTCGCCAACGCGCTC+CGG | 0.359601 | 4.4:+28718223 | MS.gene56414:CDS |
| GTTGAAGCTGATGATCAATT+TGG | 0.361165 | 4.4:+28721376 | MS.gene56414:CDS |
| TTCAGTTGAGTTTCATCTTA+GGG | 0.374933 | 4.4:+28718437 | MS.gene56414:CDS |
| TGTAGTCGTCTTTGAGTTCA+CGG | 0.407857 | 4.4:-28718173 | None:intergenic |
| CGCGTTGGCGACGCTGGCGT+CGG | 0.437447 | 4.4:-28718217 | None:intergenic |
| GCAGAAGCAATGGGAAAGCC+TGG | 0.442666 | 4.4:+28721211 | MS.gene56414:CDS |
| TCATCATAACTATATGCCTC+AGG | 0.443043 | 4.4:-28721172 | None:intergenic |
| AGTTGCTGCTGGTGACCATT+TGG | 0.448661 | 4.4:-28719688 | None:intergenic |
| CAAGGTCGATGGCGATGGTT+GGG | 0.459459 | 4.4:-28718266 | None:intergenic |
| AGGCAAACCTGCTGTGTGAC+AGG | 0.471461 | 4.4:-28719828 | None:intergenic |
| GACGTTGGATGTTAGTAGTA+AGG | 0.475900 | 4.4:+28718479 | MS.gene56414:CDS |
| TGAAATTCTCAAGCAGAAGC+TGG | 0.482693 | 4.4:+28721327 | MS.gene56414:CDS |
| ACTGAGAGCGATTGCTAGGA+AGG | 0.484416 | 4.4:+28719647 | MS.gene56414:CDS |
| TGATGATCAATTTGGTGAGC+TGG | 0.488837 | 4.4:+28721384 | MS.gene56414:CDS |
| TTGAGATGCTTTGACTGCTC+CGG | 0.496041 | 4.4:-28721287 | None:intergenic |
| TTCAACAAGGTCGATGGCGA+TGG | 0.497244 | 4.4:-28718271 | None:intergenic |
| GATGGCGATGGTTGGGACTT+CGG | 0.498289 | 4.4:-28718259 | None:intergenic |
| ACAAGGTCGATGGCGATGGT+TGG | 0.501063 | 4.4:-28718267 | None:intergenic |
| TCTTCATTGATGTGAATGTC+TGG | 0.502428 | 4.4:-28719729 | None:intergenic |
| TCTTAGGGTTAAGTGTATAA+CGG | 0.507140 | 4.4:+28718452 | MS.gene56414:CDS |
| ACGTGAGAAGCGCATGGCCA+TGG | 0.507484 | 4.4:-28718373 | None:intergenic |
| TGAGACTGAGAGCGATTGCT+AGG | 0.516563 | 4.4:+28719643 | MS.gene56414:CDS |
| ATCAAGAAAGCAGAAGCAAT+GGG | 0.525337 | 4.4:+28721202 | MS.gene56414:CDS |
| TGTGAAGTTGAGGAGAGGTC+AGG | 0.526667 | 4.4:+28719617 | MS.gene56414:CDS |
| TATTGATCCTGTCACACAGC+AGG | 0.526854 | 4.4:+28719821 | MS.gene56414:CDS |
| TCTTGCTCCTTAACAATGGA+AGG | 0.527200 | 4.4:+28718117 | None:intergenic |
| AATGGAGTCTTTGACACTTG+AGG | 0.531173 | 4.4:+28719755 | MS.gene56414:CDS |
| GCAGTTATTTCTATAAGCCC+AGG | 0.541886 | 4.4:-28721229 | None:intergenic |
| TTCGATTTCAACAAGGTCGA+TGG | 0.544241 | 4.4:-28718277 | None:intergenic |
| GATGCTTCTGTTGAATCTGA+TGG | 0.545347 | 4.4:+28718552 | MS.gene56414:CDS |
| GGATTATCATTGTGAAGTTG+AGG | 0.552832 | 4.4:+28719607 | MS.gene56414:CDS |
| TCAATATCAAAGACACGAGT+AGG | 0.554647 | 4.4:-28719804 | None:intergenic |
| TCGGTAAGGATCATGCCAAA+TGG | 0.554925 | 4.4:+28719673 | MS.gene56414:CDS |
| TGAGAGCGATTGCTAGGAAG+GGG | 0.558513 | 4.4:+28719649 | MS.gene56414:CDS |
| CATCACGCGCCGGAGCGCGT+TGG | 0.561690 | 4.4:-28718232 | None:intergenic |
| ACTCACAAGCGAACGTGCCA+TGG | 0.569511 | 4.4:+28718356 | MS.gene56414:CDS |
| CACCGGAGTAACGGTATGAT+CGG | 0.570614 | 4.4:-28718514 | None:intergenic |
| CTGAGAGCGATTGCTAGGAA+GGG | 0.570973 | 4.4:+28719648 | MS.gene56414:CDS |
| CTTCTGTTGAATCTGATGGA+AGG | 0.575113 | 4.4:+28718556 | MS.gene56414:CDS |
| CGATCATACCGTTACTCCGG+TGG | 0.575290 | 4.4:+28718515 | MS.gene56414:CDS |
| GATCAAGAAAGCAGAAGCAA+TGG | 0.576120 | 4.4:+28721201 | MS.gene56414:CDS |
| TGCTAGGAAGGGGATCGGTA+AGG | 0.577965 | 4.4:+28719659 | MS.gene56414:CDS |
| CAGAAGCAATGGGAAAGCCT+GGG | 0.582279 | 4.4:+28721212 | MS.gene56414:CDS |
| ATGGCACGTTCGCTTGTGAG+TGG | 0.583334 | 4.4:-28718354 | None:intergenic |
| GAGTTCATCGCTCACAGACT+CGG | 0.584109 | 4.4:+28718324 | MS.gene56414:CDS |
| AGGAACATCCACCGGAGTAA+CGG | 0.584181 | 4.4:-28718523 | None:intergenic |
| GATGAACTCGTCGTTCAGAA+CGG | 0.596567 | 4.4:-28718310 | None:intergenic |
| CGTGACTGTGATGCTTGTGA+TGG | 0.599792 | 4.4:+28718393 | MS.gene56414:CDS |
| GATGATCAATTTGGTGAGCT+GGG | 0.599917 | 4.4:+28721385 | MS.gene56414:CDS |
| CATCATAACTATATGCCTCA+GGG | 0.615098 | 4.4:-28721171 | None:intergenic |
| TCAACAGAAGCATCACCACC+AGG | 0.615579 | 4.4:-28718543 | None:intergenic |
| TGTGATGCTTGTGATGGTGA+TGG | 0.622311 | 4.4:+28718399 | MS.gene56414:CDS |
| CTCCGATCATACCGTTACTC+CGG | 0.622448 | 4.4:+28718512 | MS.gene56414:CDS |
| TCACCACCAGGAACATCCAC+CGG | 0.625792 | 4.4:-28718531 | None:intergenic |
| GCGATTGCTAGGAAGGGGAT+CGG | 0.627906 | 4.4:+28719654 | MS.gene56414:CDS |
| ATCATTGTGAAGTTGAGGAG+AGG | 0.635073 | 4.4:+28719612 | MS.gene56414:CDS |
| CTTCGGAAATCATCACGCGC+CGG | 0.642651 | 4.4:-28718242 | None:intergenic |
| ATGAAAGTAACAGTTGCTGC+TGG | 0.644886 | 4.4:-28719699 | None:intergenic |
| GGCATATAGTTATGATGATG+AGG | 0.651134 | 4.4:+28721177 | MS.gene56414:CDS |
| ACAGTCACGTGAGAAGCGCA+TGG | 0.655640 | 4.4:-28718379 | None:intergenic |
| AGTTCACTTCGATTTCAACA+AGG | 0.663781 | 4.4:-28718284 | None:intergenic |
| AGCAGAAGCTGGATGCTGTG+AGG | 0.686847 | 4.4:+28721338 | MS.gene56414:CDS |
| GGTGGTGGTAGTTGACCCTG+AGG | 0.702152 | 4.4:+28721156 | MS.gene56414:intron |
| GTGTATAACGGATCAGACGT+TGG | 0.703684 | 4.4:+28718464 | MS.gene56414:CDS |
| GAGCTGGGTGCACATATGCG+AGG | 0.705973 | 4.4:+28721400 | MS.gene56414:CDS |
| CTGGGTGCACATATGCGAGG+AGG | 0.741311 | 4.4:+28721403 | MS.gene56414:CDS |
| TGTGAGGCTATCTGAAGACA+CGG | 0.745035 | 4.4:+28721354 | MS.gene56414:CDS |
| ACTCCGGTGGATGTTCCTGG+TGG | 0.749174 | 4.4:+28718528 | MS.gene56414:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAAAAACAAAAT+AGG | - | chr4.4:28718589-28718608 | None:intergenic | 10.0% |
| !! | GTAAATATGATATTAATATC+TGG | + | chr4.4:28720721-28720740 | MS.gene56414:intron | 15.0% |
| !!! | AAAAAATCAGTTTTTTCTAA+TGG | + | chr4.4:28718626-28718645 | MS.gene56414:intron | 15.0% |
| !!! | AAAAATCAGTTTTTTCTAAT+GGG | + | chr4.4:28718627-28718646 | MS.gene56414:intron | 15.0% |
| !!! | AAGTAACAATGAATTTTTTA+AGG | - | chr4.4:28721086-28721105 | None:intergenic | 15.0% |
| !! | AAATACCAAAAAATTAAGGT+TGG | + | chr4.4:28720423-28720442 | MS.gene56414:intron | 20.0% |
| !! | AGGAAAATACCAAAAAATTA+AGG | + | chr4.4:28720419-28720438 | MS.gene56414:intron | 20.0% |
| !! | GAATCTATAATTAGACATAA+TGG | - | chr4.4:28720362-28720381 | None:intergenic | 20.0% |
| !!! | ACTGATTTTTTTTTCTCATT+AGG | - | chr4.4:28718617-28718636 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGTATTGATTAGG+TGG | + | chr4.4:28721138-28721157 | MS.gene56414:intron | 20.0% |
| !!! | CTGATTTTTTTTTCTCATTA+GGG | - | chr4.4:28718616-28718635 | None:intergenic | 20.0% |
| !!! | CTTTTGATTTTGTGTTTAAA+TGG | + | chr4.4:28719983-28720002 | MS.gene56414:intron | 20.0% |
| !!! | GTGATTTTTTTGTATTGATT+AGG | + | chr4.4:28721135-28721154 | MS.gene56414:intron | 20.0% |
| !!! | TATAAGCTATTTCTATAACA+AGG | + | chr4.4:28718799-28718818 | MS.gene56414:intron | 20.0% |
| !!! | TTTTTCCAACCTTAATTTTT+TGG | - | chr4.4:28720431-28720450 | None:intergenic | 20.0% |
| ! | AAATTAAGCTGTTTACCTAT+AGG | - | chr4.4:28719176-28719195 | None:intergenic | 25.0% |
| ! | AACCATCTAAATGAGATTAA+AGG | - | chr4.4:28719489-28719508 | None:intergenic | 25.0% |
| ! | AAGATCATATCAGAAAGTAA+AGG | - | chr4.4:28720241-28720260 | None:intergenic | 25.0% |
| ! | AATTAAGCTGTTTACCTATA+GGG | - | chr4.4:28719175-28719194 | None:intergenic | 25.0% |
| ! | CCTAAGAATCATTATCAAAT+TGG | - | chr4.4:28720684-28720703 | None:intergenic | 25.0% |
| ! | GTACAATAAATTACCTTAAG+TGG | - | chr4.4:28721111-28721130 | None:intergenic | 25.0% |
| ! | TAAGCTATGTCTATAACAAA+AGG | + | chr4.4:28719295-28719314 | MS.gene56414:intron | 25.0% |
| ! | TACCTTTAATCTCATTTAGA+TGG | + | chr4.4:28719484-28719503 | MS.gene56414:intron | 25.0% |
| ! | TCAAATAAACCAATACAAAC+AGG | + | chr4.4:28718958-28718977 | MS.gene56414:intron | 25.0% |
| ! | TCACATCAATGAAGATTTAA+TGG | + | chr4.4:28719737-28719756 | MS.gene56414:CDS | 25.0% |
| ! | TTGATCTTAGAACAAATGTT+GGG | + | chr4.4:28720628-28720647 | MS.gene56414:intron | 25.0% |
| ! | TTTATTACTATGAATCCACT+AGG | + | chr4.4:28720963-28720982 | MS.gene56414:intron | 25.0% |
| !! | AATGAGATTAAAGGTATGTT+TGG | - | chr4.4:28719480-28719499 | None:intergenic | 25.0% |
| !! | ATAAGAGTATGTAAAACACT+TGG | - | chr4.4:28720889-28720908 | None:intergenic | 25.0% |
| !! | ATTTAAAATCCTGCTTATGA+TGG | + | chr4.4:28720744-28720763 | MS.gene56414:intron | 25.0% |
| !! | TAATGATTCTTAGGCTTTAA+AGG | + | chr4.4:28720690-28720709 | MS.gene56414:intron | 25.0% |
| !! | TCGTACTTCAAATTCATTTT+AGG | + | chr4.4:28720930-28720949 | MS.gene56414:intron | 25.0% |
| !! | TTTTCAAATGTGACATACAT+GGG | + | chr4.4:28719027-28719046 | MS.gene56414:intron | 25.0% |
| !!! | ATGTTTTGAATAGTTCTTGT+GGG | + | chr4.4:28720208-28720227 | MS.gene56414:intron | 25.0% |
| !!! | CCAATTTGATAATGATTCTT+AGG | + | chr4.4:28720681-28720700 | MS.gene56414:intron | 25.0% |
| !!! | GTTTTAATGTTGGGTTTATT+CGG | + | chr4.4:28719541-28719560 | MS.gene56414:intron | 25.0% |
| !!! | TTGGTTTGATGTTTTCAAAT+GGG | + | chr4.4:28718995-28719014 | MS.gene56414:intron | 25.0% |
| !!! | TTTGGTTTGATGTTTTCAAA+TGG | + | chr4.4:28718994-28719013 | MS.gene56414:intron | 25.0% |
| !!! | TTTTAAGGAACAATACATCA+AGG | - | chr4.4:28721071-28721090 | None:intergenic | 25.0% |
| !!! | TTTTGTTTATGCTGAATGTA+GGG | + | chr4.4:28719584-28719603 | MS.gene56414:intron | 25.0% |
| !!! | TTTTTGTTTATGCTGAATGT+AGG | + | chr4.4:28719583-28719602 | MS.gene56414:intron | 25.0% |
| AAGGTTGGAAAAATAGAAAG+TGG | + | chr4.4:28720438-28720457 | MS.gene56414:intron | 30.0% | |
| AATAAGCTATGCGTATAACA+AGG | + | chr4.4:28719220-28719239 | MS.gene56414:intron | 30.0% | |
| AGAACAAACAGTTATGTTGT+AGG | + | chr4.4:28719076-28719095 | MS.gene56414:intron | 30.0% | |
| AGGTTGGAAAAATAGAAAGT+GGG | + | chr4.4:28720439-28720458 | MS.gene56414:intron | 30.0% | |
| AGTTATGTTGTAGGATCTTT+GGG | + | chr4.4:28719085-28719104 | MS.gene56414:intron | 30.0% | |
| ATCAAACCAAAATGAGAACA+AGG | - | chr4.4:28718985-28719004 | None:intergenic | 30.0% | |
| ATTCTTGATCAATGCTAAGT+CGG | + | chr4.4:28721004-28721023 | MS.gene56414:intron | 30.0% | |
| CACAAAATCAAAAGACAGTA+AGG | - | chr4.4:28719977-28719996 | None:intergenic | 30.0% | |
| CTTGATCTTAGAACAAATGT+TGG | + | chr4.4:28720627-28720646 | MS.gene56414:intron | 30.0% | |
| TATACGCATAGCTTATTCAT+AGG | - | chr4.4:28719217-28719236 | None:intergenic | 30.0% | |
| TCAAACCAAAATGAGAACAA+GGG | - | chr4.4:28718984-28719003 | None:intergenic | 30.0% | |
| TCTTAGGGTTAAGTGTATAA+CGG | + | chr4.4:28718452-28718471 | MS.gene56414:CDS | 30.0% | |
| TGATCTTAGAACAAATGTTG+GGG | + | chr4.4:28720629-28720648 | MS.gene56414:intron | 30.0% | |
| TTACAAGCAATCACAAATAG+AGG | + | chr4.4:28720289-28720308 | MS.gene56414:intron | 30.0% | |
| TTACATACTCTTATCTTGTG+TGG | + | chr4.4:28720895-28720914 | MS.gene56414:intron | 30.0% | |
| TTCAGTTGAGTTTCATCTTA+GGG | + | chr4.4:28718437-28718456 | MS.gene56414:CDS | 30.0% | |
| TTGAATGTGATTGTGTGTAT+GGG | + | chr4.4:28718698-28718717 | MS.gene56414:intron | 30.0% | |
| TTTGAATGTGATTGTGTGTA+TGG | + | chr4.4:28718697-28718716 | MS.gene56414:intron | 30.0% | |
| TTTGTTTATGCTGAATGTAG+GGG | + | chr4.4:28719585-28719604 | MS.gene56414:intron | 30.0% | |
| ! | ATCCTGATGTAGTGTTTTAT+GGG | - | chr4.4:28720329-28720348 | None:intergenic | 30.0% |
| ! | ATTTTCACAGTTGAATCTAC+CGG | + | chr4.4:28721268-28721287 | MS.gene56414:CDS | 30.0% |
| ! | CATTATCAAATTGGTAGCTT+GGG | - | chr4.4:28720675-28720694 | None:intergenic | 30.0% |
| ! | GATTAAAGGTATGTTTGGAT+TGG | - | chr4.4:28719475-28719494 | None:intergenic | 30.0% |
| ! | GGTTTTCTTAGATTTCAACT+GGG | + | chr4.4:28718648-28718667 | MS.gene56414:intron | 30.0% |
| ! | GTTTTCAAATGTGACATACA+TGG | + | chr4.4:28719026-28719045 | MS.gene56414:intron | 30.0% |
| ! | TATCCTGATGTAGTGTTTTA+TGG | - | chr4.4:28720330-28720349 | None:intergenic | 30.0% |
| ! | TCATTATCAAATTGGTAGCT+TGG | - | chr4.4:28720676-28720695 | None:intergenic | 30.0% |
| !! | GATGTTTTGAATAGTTCTTG+TGG | + | chr4.4:28720207-28720226 | MS.gene56414:intron | 30.0% |
| !!! | AGAACGAACAGTTTTGTTTT+AGG | + | chr4.4:28718747-28718766 | MS.gene56414:intron | 30.0% |
| !!! | TTTTTGTATTGATTAGGTGG+TGG | + | chr4.4:28721141-28721160 | MS.gene56414:intron | 30.0% |
| AAAACACTACATCAGGATAG+TGG | + | chr4.4:28720331-28720350 | MS.gene56414:intron | 35.0% | |
| AAACACTACATCAGGATAGT+GGG | + | chr4.4:28720332-28720351 | MS.gene56414:intron | 35.0% | |
| AACTAGGATGTTTACCCAAA+GGG | - | chr4.4:28719246-28719265 | None:intergenic | 35.0% | |
| AAGACAGTAAGGCAAGTATT+TGG | - | chr4.4:28719966-28719985 | None:intergenic | 35.0% | |
| AAGGAACAATACATCAAGGA+AGG | - | chr4.4:28721067-28721086 | None:intergenic | 35.0% | |
| AGAGTGGAAAATGCAATTAG+AGG | + | chr4.4:28720141-28720160 | MS.gene56414:intron | 35.0% | |
| AGATCAAGCAATTACTAACC+AGG | - | chr4.4:28720615-28720634 | None:intergenic | 35.0% | |
| AGTTCACTTCGATTTCAACA+AGG | - | chr4.4:28718287-28718306 | None:intergenic | 35.0% | |
| ATATGTGTGTGTACGAACTA+AGG | + | chr4.4:28720399-28720418 | MS.gene56414:intron | 35.0% | |
| ATCAAGAAAGCAGAAGCAAT+GGG | + | chr4.4:28721202-28721221 | MS.gene56414:CDS | 35.0% | |
| CAGTTATGTTGTAGGATCTT+TGG | + | chr4.4:28719084-28719103 | MS.gene56414:intron | 35.0% | |
| CATCATAACTATATGCCTCA+GGG | - | chr4.4:28721174-28721193 | None:intergenic | 35.0% | |
| CTATTCTTATTCGCTTCCTA+AGG | + | chr4.4:28719849-28719868 | MS.gene56414:intron | 35.0% | |
| CTGATACTTAGTTATGCACT+TGG | + | chr4.4:28719927-28719946 | MS.gene56414:intron | 35.0% | |
| CTTAGGAAGCGAATAAGAAT+AGG | - | chr4.4:28719851-28719870 | None:intergenic | 35.0% | |
| CTTCACACTTTCATTCTAGA+AGG | + | chr4.4:28720263-28720282 | MS.gene56414:intron | 35.0% | |
| CTTCTGCTTGAGAATTTCAA+TGG | - | chr4.4:28721326-28721345 | None:intergenic | 35.0% | |
| GAAAACAGCTTACAGCTTAA+TGG | - | chr4.4:28719342-28719361 | None:intergenic | 35.0% | |
| GGATTATCATTGTGAAGTTG+AGG | + | chr4.4:28719607-28719626 | MS.gene56414:CDS | 35.0% | |
| GGTTGGAAAAATAGAAAGTG+GGG | + | chr4.4:28720440-28720459 | MS.gene56414:intron | 35.0% | |
| GTCTGTAAAAAAGACCCTAT+AGG | + | chr4.4:28719158-28719177 | MS.gene56414:intron | 35.0% | |
| GTTCAGTTGAGTTTCATCTT+AGG | + | chr4.4:28718436-28718455 | MS.gene56414:CDS | 35.0% | |
| GTTGAAGCTGATGATCAATT+TGG | + | chr4.4:28721376-28721395 | MS.gene56414:CDS | 35.0% | |
| GTTGGAAAAATAGAAAGTGG+GGG | + | chr4.4:28720441-28720460 | MS.gene56414:intron | 35.0% | |
| TAACTAGGATGTTTACCCAA+AGG | - | chr4.4:28719247-28719266 | None:intergenic | 35.0% | |
| TCAATATCAAAGACACGAGT+AGG | - | chr4.4:28719807-28719826 | None:intergenic | 35.0% | |
| TCATCATAACTATATGCCTC+AGG | - | chr4.4:28721175-28721194 | None:intergenic | 35.0% | |
| TCTTCATTGATGTGAATGTC+TGG | - | chr4.4:28719732-28719751 | None:intergenic | 35.0% | |
| TTAATGTTGGGTTTATTCGG+AGG | + | chr4.4:28719544-28719563 | MS.gene56414:intron | 35.0% | |
| TTGACTGCAAACTGTAGTAT+GGG | + | chr4.4:28720525-28720544 | MS.gene56414:intron | 35.0% | |
| TTGCTATAAAGCTCGTAACT+AGG | - | chr4.4:28719262-28719281 | None:intergenic | 35.0% | |
| TTGGAAAAATAGAAAGTGGG+GGG | + | chr4.4:28720442-28720461 | MS.gene56414:intron | 35.0% | |
| TTGTTTATGCTGAATGTAGG+GGG | + | chr4.4:28719586-28719605 | MS.gene56414:intron | 35.0% | |
| TTTGACACTTGAGGAGAAAA+AGG | + | chr4.4:28719764-28719783 | MS.gene56414:CDS | 35.0% | |
| TTTGACTGCAAACTGTAGTA+TGG | + | chr4.4:28720524-28720543 | MS.gene56414:intron | 35.0% | |
| ! | ACTGATTTCACATGTAATGC+TGG | + | chr4.4:28719892-28719911 | MS.gene56414:intron | 35.0% |
| ! | CATTGTTACTTGACCACTTA+AGG | + | chr4.4:28721095-28721114 | MS.gene56414:intron | 35.0% |
| ! | GGCATATAGTTATGATGATG+AGG | + | chr4.4:28721177-28721196 | MS.gene56414:CDS | 35.0% |
| ! | GGGTTTTCTTAGATTTCAAC+TGG | + | chr4.4:28718647-28718666 | MS.gene56414:intron | 35.0% |
| ! | TATTCGCTTCCTAAGGATTT+TGG | + | chr4.4:28719856-28719875 | MS.gene56414:intron | 35.0% |
| ! | TCCATTTTCATTGATGCTGA+GGG | + | chr4.4:28719517-28719536 | MS.gene56414:intron | 35.0% |
| ! | TGTGTATGGGTTTAGGTTTA+GGG | + | chr4.4:28718711-28718730 | MS.gene56414:intron | 35.0% |
| ! | TTCCATTTTCATTGATGCTG+AGG | + | chr4.4:28719516-28719535 | MS.gene56414:intron | 35.0% |
| !! | CACAAGATAAAAGTACCTAG+TGG | - | chr4.4:28720981-28721000 | None:intergenic | 35.0% |
| !!! | AGAGAGTTTTGGAAATAAGC+TGG | + | chr4.4:28718867-28718886 | MS.gene56414:intron | 35.0% |
| AACATTCCATGGCCAAAGTT+TGG | + | chr4.4:28720557-28720576 | MS.gene56414:intron | 40.0% | |
| AATAAGCTGGAAACAGCTTG+TGG | + | chr4.4:28718880-28718899 | MS.gene56414:intron | 40.0% | |
| AATGGAGTCTTTGACACTTG+AGG | + | chr4.4:28719755-28719774 | MS.gene56414:CDS | 40.0% | |
| ACAAGTCAAACAGAACCTAG+TGG | - | chr4.4:28721034-28721053 | None:intergenic | 40.0% | |
| ACTTGAGGAGAAAAAGGAGT+GGG | + | chr4.4:28719770-28719789 | MS.gene56414:CDS | 40.0% | |
| AGCAATCACAAATAGAGGCA+TGG | + | chr4.4:28720294-28720313 | MS.gene56414:intron | 40.0% | |
| ATCATTGTGAAGTTGAGGAG+AGG | + | chr4.4:28719612-28719631 | MS.gene56414:CDS | 40.0% | |
| ATGAAAGTAACAGTTGCTGC+TGG | - | chr4.4:28719702-28719721 | None:intergenic | 40.0% | |
| ATGCTACAAGCACTTCCAAA+GGG | - | chr4.4:28718773-28718792 | None:intergenic | 40.0% | |
| CCACTCTACTTCAACTCAAA+AGG | - | chr4.4:28720128-28720147 | None:intergenic | 40.0% | |
| CTACCATGAAAAGATACGCT+GGG | + | chr4.4:28719367-28719386 | MS.gene56414:intron | 40.0% | |
| CTGCTGAAGCAATGCTTATA+AGG | + | chr4.4:28720819-28720838 | MS.gene56414:intron | 40.0% | |
| CTTCTGTTGAATCTGATGGA+AGG | + | chr4.4:28718556-28718575 | MS.gene56414:CDS | 40.0% | |
| GACGTTGGATGTTAGTAGTA+AGG | + | chr4.4:28718479-28718498 | MS.gene56414:CDS | 40.0% | |
| GATCAAGAAAGCAGAAGCAA+TGG | + | chr4.4:28721201-28721220 | MS.gene56414:CDS | 40.0% | |
| GATGCTTCTGTTGAATCTGA+TGG | + | chr4.4:28718552-28718571 | MS.gene56414:CDS | 40.0% | |
| GGTAAACAACCATCATAAGC+AGG | - | chr4.4:28720756-28720775 | None:intergenic | 40.0% | |
| GTGATTGTGTGTATGGGTTT+AGG | + | chr4.4:28718704-28718723 | MS.gene56414:intron | 40.0% | |
| GTTGAATCTGATGGAAGGTT+CGG | + | chr4.4:28718561-28718580 | MS.gene56414:intron | 40.0% | |
| TACCAAGCTAAGCATTTCTG+AGG | - | chr4.4:28718931-28718950 | None:intergenic | 40.0% | |
| TATGCTACAAGCACTTCCAA+AGG | - | chr4.4:28718774-28718793 | None:intergenic | 40.0% | |
| TCCCTCAGCATCAATGAAAA+TGG | - | chr4.4:28719521-28719540 | None:intergenic | 40.0% | |
| TGAAATTCTCAAGCAGAAGC+TGG | + | chr4.4:28721327-28721346 | MS.gene56414:CDS | 40.0% | |
| TGTGCCTAACCAAAATCCTT+AGG | - | chr4.4:28719868-28719887 | None:intergenic | 40.0% | |
| TTACTAACCAGGCACTACAA+CGG | - | chr4.4:28720604-28720623 | None:intergenic | 40.0% | |
| TTCGATTTCAACAAGGTCGA+TGG | - | chr4.4:28718280-28718299 | None:intergenic | 40.0% | |
| TTGTAGGATCTTTGGGTGAA+CGG | + | chr4.4:28719092-28719111 | MS.gene56414:intron | 40.0% | |
| ! | GAAGCTATCGTAGAGAGTTT+TGG | + | chr4.4:28718856-28718875 | MS.gene56414:intron | 40.0% |
| ! | GATGATCAATTTGGTGAGCT+GGG | + | chr4.4:28721385-28721404 | MS.gene56414:CDS | 40.0% |
| ! | GTGTGTATGGGTTTAGGTTT+AGG | + | chr4.4:28718710-28718729 | MS.gene56414:intron | 40.0% |
| ! | TCACAAATAGAGGCATGGAA+CGG | + | chr4.4:28720299-28720318 | MS.gene56414:intron | 40.0% |
| ! | TGATGATCAATTTGGTGAGC+TGG | + | chr4.4:28721384-28721403 | MS.gene56414:CDS | 40.0% |
| ! | TGTAGTCGTCTTTGAGTTCA+CGG | - | chr4.4:28718176-28718195 | None:intergenic | 40.0% |
| !! | GCAGTTATTTCTATAAGCCC+AGG | - | chr4.4:28721232-28721251 | None:intergenic | 40.0% |
| !! | GCTGAGGGAGTTTTAATGTT+GGG | + | chr4.4:28719532-28719551 | MS.gene56414:intron | 40.0% |
| !! | TGCTGAGGGAGTTTTAATGT+TGG | + | chr4.4:28719531-28719550 | MS.gene56414:intron | 40.0% |
| !! | TGTTGGGGATTTGCTATACT+TGG | + | chr4.4:28720644-28720663 | MS.gene56414:intron | 40.0% |
| !!! | CAGTTTTGTTTTAGGCCCTT+TGG | + | chr4.4:28718755-28718774 | MS.gene56414:intron | 40.0% |
| !!! | CCTTTTGAGTTGAAGTAGAG+TGG | + | chr4.4:28720125-28720144 | MS.gene56414:intron | 40.0% |
| !!! | GACATACATGGGTTTTGTTC+TGG | + | chr4.4:28719038-28719057 | MS.gene56414:intron | 40.0% |
| !!! | GCTTCCTAAGGATTTTGGTT+AGG | + | chr4.4:28719861-28719880 | MS.gene56414:intron | 40.0% |
| AGCCTCAGAAATGCTTAGCT+TGG | + | chr4.4:28718926-28718945 | MS.gene56414:intron | 45.0% | |
| ATGCGTATAACAAGGCCCTT+TGG | + | chr4.4:28719228-28719247 | MS.gene56414:intron | 45.0% | |
| CACTTGAGGAGAAAAAGGAG+TGG | + | chr4.4:28719769-28719788 | MS.gene56414:CDS | 45.0% | |
| CCATCATTGACCACAGAAAG+AGG | - | chr4.4:28720174-28720193 | None:intergenic | 45.0% | |
| CCTCTTTCTGTGGTCAATGA+TGG | + | chr4.4:28720171-28720190 | MS.gene56414:intron | 45.0% | |
| GAACAAGGGCCTGTTTGTAT+TGG | - | chr4.4:28718970-28718989 | None:intergenic | 45.0% | |
| GATGAACTCGTCGTTCAGAA+CGG | - | chr4.4:28718313-28718332 | None:intergenic | 45.0% | |
| GCATTGCTTCAGCAGAAATG+AGG | - | chr4.4:28720814-28720833 | None:intergenic | 45.0% | |
| GCTACCATGAAAAGATACGC+TGG | + | chr4.4:28719366-28719385 | MS.gene56414:intron | 45.0% | |
| GGCATGACTCAAACATTCCA+TGG | + | chr4.4:28720546-28720565 | MS.gene56414:intron | 45.0% | |
| GGCCCATAAAACACTACATC+AGG | + | chr4.4:28720324-28720343 | MS.gene56414:intron | 45.0% | |
| TATTGATCCTGTCACACAGC+AGG | + | chr4.4:28719821-28719840 | MS.gene56414:CDS | 45.0% | |
| TCGGTAAGGATCATGCCAAA+TGG | + | chr4.4:28719673-28719692 | MS.gene56414:CDS | 45.0% | |
| TGCGTATAACAAGGCCCTTT+GGG | + | chr4.4:28719229-28719248 | MS.gene56414:intron | 45.0% | |
| TGGTGACCACTACCAAACTT+TGG | - | chr4.4:28720572-28720591 | None:intergenic | 45.0% | |
| TGTGAGGCTATCTGAAGACA+CGG | + | chr4.4:28721354-28721373 | MS.gene56414:CDS | 45.0% | |
| TTGAGATGCTTTGACTGCTC+CGG | - | chr4.4:28721290-28721309 | None:intergenic | 45.0% | |
| ! | AAGATACGCTGGGAAGTGTA+TGG | + | chr4.4:28719377-28719396 | MS.gene56414:intron | 45.0% |
| ! | ACAGGCCCTTGTTCTCATTT+TGG | + | chr4.4:28718976-28718995 | MS.gene56414:intron | 45.0% |
| ! | ATTCCTGCAGATGATGATGC+TGG | - | chr4.4:28720783-28720802 | None:intergenic | 45.0% |
| ! | CACAAATAGAGGCATGGAAC+GGG | + | chr4.4:28720300-28720319 | MS.gene56414:intron | 45.0% |
| ! | CTTCCCAGCGTATCTTTTCA+TGG | - | chr4.4:28719373-28719392 | None:intergenic | 45.0% |
| ! | TGTGATGCTTGTGATGGTGA+TGG | + | chr4.4:28718399-28718418 | MS.gene56414:CDS | 45.0% |
| !! | ACTACATCAGGATAGTGGGA+TGG | + | chr4.4:28720336-28720355 | MS.gene56414:intron | 45.0% |
| !! | GTGTATAACGGATCAGACGT+TGG | + | chr4.4:28718464-28718483 | MS.gene56414:CDS | 45.0% |
| ACTGAGAGCGATTGCTAGGA+AGG | + | chr4.4:28719647-28719666 | MS.gene56414:CDS | 50.0% | |
| AGGAACATCCACCGGAGTAA+CGG | - | chr4.4:28718526-28718545 | None:intergenic | 50.0% | |
| AGGTGCTTGTCCTCTTTCTG+TGG | + | chr4.4:28720161-28720180 | MS.gene56414:intron | 50.0% | |
| AGTTGCTGCTGGTGACCATT+TGG | - | chr4.4:28719691-28719710 | None:intergenic | 50.0% | |
| ATAGAAAGTGGGGGGCAAAG+TGG | + | chr4.4:28720450-28720469 | MS.gene56414:intron | 50.0% | |
| CACCGGAGTAACGGTATGAT+CGG | - | chr4.4:28718517-28718536 | None:intergenic | 50.0% | |
| CAGAAGCAATGGGAAAGCCT+GGG | + | chr4.4:28721212-28721231 | MS.gene56414:CDS | 50.0% | |
| CCACTACCAAACTTTGGCCA+TGG | - | chr4.4:28720566-28720585 | None:intergenic | 50.0% | |
| CCATGGCCAAAGTTTGGTAG+TGG | + | chr4.4:28720563-28720582 | MS.gene56414:intron | 50.0% | |
| CGTGACTGTGATGCTTGTGA+TGG | + | chr4.4:28718393-28718412 | MS.gene56414:CDS | 50.0% | |
| CTCCGATCATACCGTTACTC+CGG | + | chr4.4:28718512-28718531 | MS.gene56414:CDS | 50.0% | |
| CTGAGAGCGATTGCTAGGAA+GGG | + | chr4.4:28719648-28719667 | MS.gene56414:CDS | 50.0% | |
| GAGTTCATCGCTCACAGACT+CGG | + | chr4.4:28718324-28718343 | MS.gene56414:CDS | 50.0% | |
| TAGAAAGTGGGGGGCAAAGT+GGG | + | chr4.4:28720451-28720470 | MS.gene56414:intron | 50.0% | |
| TGAGACTGAGAGCGATTGCT+AGG | + | chr4.4:28719643-28719662 | MS.gene56414:CDS | 50.0% | |
| TGAGAGCGATTGCTAGGAAG+GGG | + | chr4.4:28719649-28719668 | MS.gene56414:CDS | 50.0% | |
| TGAGGAGAAAAAGGAGTGGG+TGG | + | chr4.4:28719773-28719792 | MS.gene56414:CDS | 50.0% | |
| TGTCCAGCATCATCATCTGC+AGG | + | chr4.4:28720777-28720796 | MS.gene56414:intron | 50.0% | |
| TGTGAAGTTGAGGAGAGGTC+AGG | + | chr4.4:28719617-28719636 | MS.gene56414:CDS | 50.0% | |
| TTCAACAAGGTCGATGGCGA+TGG | - | chr4.4:28718274-28718293 | None:intergenic | 50.0% | |
| ! | AAATAGAGGCATGGAACGGG+TGG | + | chr4.4:28720303-28720322 | MS.gene56414:intron | 50.0% |
| ! | AGTTCACGGATTTTCACGCG+CGG | - | chr4.4:28718162-28718181 | None:intergenic | 50.0% |
| ! | GCAGATGATGATGCTGGACA+TGG | - | chr4.4:28720777-28720796 | None:intergenic | 50.0% |
| !! | TCAACAGAAGCATCACCACC+AGG | - | chr4.4:28718546-28718565 | None:intergenic | 50.0% |
| ACAAGGTCGATGGCGATGGT+TGG | - | chr4.4:28718270-28718289 | None:intergenic | 55.0% | |
| ACTCACAAGCGAACGTGCCA+TGG | + | chr4.4:28718356-28718375 | MS.gene56414:CDS | 55.0% | |
| AGCAGAAGCTGGATGCTGTG+AGG | + | chr4.4:28721338-28721357 | MS.gene56414:CDS | 55.0% | |
| AGGCAAACCTGCTGTGTGAC+AGG | - | chr4.4:28719831-28719850 | None:intergenic | 55.0% | |
| ATGGCACGTTCGCTTGTGAG+TGG | - | chr4.4:28718357-28718376 | None:intergenic | 55.0% | |
| CAAGGTCGATGGCGATGGTT+GGG | - | chr4.4:28718269-28718288 | None:intergenic | 55.0% | |
| CGATCATACCGTTACTCCGG+TGG | + | chr4.4:28718515-28718534 | MS.gene56414:CDS | 55.0% | |
| CTTCGGAAATCATCACGCGC+CGG | - | chr4.4:28718245-28718264 | None:intergenic | 55.0% | |
| GATGGCGATGGTTGGGACTT+CGG | - | chr4.4:28718262-28718281 | None:intergenic | 55.0% | |
| GCAGAAGCAATGGGAAAGCC+TGG | + | chr4.4:28721211-28721230 | MS.gene56414:CDS | 55.0% | |
| GCGATTGCTAGGAAGGGGAT+CGG | + | chr4.4:28719654-28719673 | MS.gene56414:CDS | 55.0% | |
| GTTACTCCGGTGGATGTTCC+TGG | + | chr4.4:28718525-28718544 | MS.gene56414:CDS | 55.0% | |
| TCACCACCAGGAACATCCAC+CGG | - | chr4.4:28718534-28718553 | None:intergenic | 55.0% | |
| TGCTAAGTCGGTCAGCCACT+AGG | + | chr4.4:28721016-28721035 | MS.gene56414:intron | 55.0% | |
| TGCTAGGAAGGGGATCGGTA+AGG | + | chr4.4:28719659-28719678 | MS.gene56414:CDS | 55.0% | |
| ! | ACAGTCACGTGAGAAGCGCA+TGG | - | chr4.4:28718382-28718401 | None:intergenic | 55.0% |
| ! | CAGGCACTACAACGGTGTTG+CGG | - | chr4.4:28720596-28720615 | None:intergenic | 55.0% |
| ACTCCGGTGGATGTTCCTGG+TGG | + | chr4.4:28718528-28718547 | MS.gene56414:CDS | 60.0% | |
| CGCAACACCGTTGTAGTGCC+TGG | + | chr4.4:28720594-28720613 | MS.gene56414:intron | 60.0% | |
| CTGGGTGCACATATGCGAGG+AGG | + | chr4.4:28721403-28721422 | MS.gene56414:CDS | 60.0% | |
| GAGCTGGGTGCACATATGCG+AGG | + | chr4.4:28721400-28721419 | MS.gene56414:CDS | 60.0% | |
| ! | ACGTGAGAAGCGCATGGCCA+TGG | - | chr4.4:28718376-28718395 | None:intergenic | 60.0% |
| ! | GGTGGTGGTAGTTGACCCTG+AGG | + | chr4.4:28721156-28721175 | MS.gene56414:intron | 60.0% |
| !! | CACTACAACGGTGTTGCGGC+TGG | - | chr4.4:28720592-28720611 | None:intergenic | 60.0% |
| CATCACGCGCCGGAGCGCGT+TGG | - | chr4.4:28718235-28718254 | None:intergenic | 75.0% | |
| CCAGCGTCGCCAACGCGCTC+CGG | + | chr4.4:28718223-28718242 | MS.gene56414:CDS | 75.0% | |
| ! | CGCGTTGGCGACGCTGGCGT+CGG | - | chr4.4:28718220-28718239 | None:intergenic | 75.0% |
| !! | CCGGAGCGCGTTGGCGACGC+TGG | - | chr4.4:28718226-28718245 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28718132 | 28721429 | 28718132 | ID=MS.gene56414 |
| chr4.4 | mRNA | 28718132 | 28721429 | 28718132 | ID=MS.gene56414.t1;Parent=MS.gene56414 |
| chr4.4 | exon | 28718132 | 28718577 | 28718132 | ID=MS.gene56414.t1.exon1;Parent=MS.gene56414.t1 |
| chr4.4 | CDS | 28718132 | 28718577 | 28718132 | ID=cds.MS.gene56414.t1;Parent=MS.gene56414.t1 |
| chr4.4 | exon | 28719605 | 28719842 | 28719605 | ID=MS.gene56414.t1.exon2;Parent=MS.gene56414.t1 |
| chr4.4 | CDS | 28719605 | 28719842 | 28719605 | ID=cds.MS.gene56414.t1;Parent=MS.gene56414.t1 |
| chr4.4 | exon | 28721157 | 28721429 | 28721157 | ID=MS.gene56414.t1.exon3;Parent=MS.gene56414.t1 |
| chr4.4 | CDS | 28721157 | 28721429 | 28721157 | ID=cds.MS.gene56414.t1;Parent=MS.gene56414.t1 |
| Gene Sequence |
| Protein sequence |
