AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055112


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055112.t1 MTR_7g066240 100.000 51 0 0 1 51 1 51 9.17e-33 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055112.t1 AT5G41010 88.235 51 6 0 1 51 1 51 1.24e-29 98.6
MS.gene055112.t1 AT1G53690 73.171 41 10 1 2 41 10 50 3.67e-15 62.4
MS.gene055112.t1 AT1G53690 73.171 41 10 1 2 41 10 50 3.67e-15 62.4

Find 12 sgRNAs with CRISPR-Local

Find 11 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTAACGTGCTTCATAC+TGG 0.389614 7.4:-38668468 None:intergenic
AATAACGTCACCTGACTTCA+AGG 0.407467 7.4:-38668389 None:intergenic
GACGAGTGCGCTTCTTGTAA+AGG 0.448256 7.4:-38668438 None:intergenic
GTCGAGAATACCTTGAAGTC+AGG 0.501151 7.4:+38668379 MS.gene055112:CDS
CAGAGGTAACTCACAGGCTC+AGG 0.525994 7.4:-38668343 None:intergenic
AGTTACCTCTGTGGTGATTG+TGG 0.528859 7.4:+38668355 MS.gene055112:CDS
TAACTCACAGGCTCAGGCAG+AGG 0.539104 7.4:-38668337 None:intergenic
GGATTCTGTAACCACAGTCA+CGG 0.652403 7.4:-38668417 None:intergenic
GTTATTCAGTGCCGTGACTG+TGG 0.657037 7.4:+38668406 MS.gene055112:CDS
TCACCACAGAGGTAACTCAC+AGG 0.674710 7.4:-38668349 None:intergenic
GAGCCTGTGAGTTACCTCTG+TGG 0.764675 7.4:+38668346 MS.gene055112:CDS
CGACTCCACAATCACCACAG+AGG 0.769265 7.4:-38668360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AATAACGTCACCTGACTTCA+AGG - chr7.4:38668392-38668411 None:intergenic 40.0%
AGTTACCTCTGTGGTGATTG+TGG + chr7.4:38668355-38668374 MS.gene055112:CDS 45.0%
GGATTCTGTAACCACAGTCA+CGG - chr7.4:38668420-38668439 None:intergenic 45.0%
GTCGAGAATACCTTGAAGTC+AGG + chr7.4:38668379-38668398 MS.gene055112:CDS 45.0%
GACGAGTGCGCTTCTTGTAA+AGG - chr7.4:38668441-38668460 None:intergenic 50.0%
GTTATTCAGTGCCGTGACTG+TGG + chr7.4:38668406-38668425 MS.gene055112:CDS 50.0%
TCACCACAGAGGTAACTCAC+AGG - chr7.4:38668352-38668371 None:intergenic 50.0%
CAGAGGTAACTCACAGGCTC+AGG - chr7.4:38668346-38668365 None:intergenic 55.0%
CGACTCCACAATCACCACAG+AGG - chr7.4:38668363-38668382 None:intergenic 55.0%
GAGCCTGTGAGTTACCTCTG+TGG + chr7.4:38668346-38668365 MS.gene055112:CDS 55.0%
TAACTCACAGGCTCAGGCAG+AGG - chr7.4:38668340-38668359 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38668331 38668486 38668331 ID=MS.gene055112
chr7.4 mRNA 38668331 38668486 38668331 ID=MS.gene055112.t1;Parent=MS.gene055112
chr7.4 exon 38668331 38668486 38668331 ID=MS.gene055112.t1.exon1;Parent=MS.gene055112.t1
chr7.4 CDS 38668331 38668486 38668331 ID=cds.MS.gene055112.t1;Parent=MS.gene055112.t1
Gene Sequence

>MS.gene055112

ATGGATCCTCTGCCTGAGCCTGTGAGTTACCTCTGTGGTGATTGTGGAGTCGAGAATACCTTGAAGTCAGGTGACGTTATTCAGTGCCGTGACTGTGGTTACAGAATCCTTTACAAGAAGCGCACTCGTCGCATTGTCCAGTATGAAGCACGTTAA

Protein sequence

>MS.gene055112.t1

MDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR