AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007033

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007033.t1 MTR_7g107380 98.068 207 3 1 1 207 1 206 1.67e-150 416
MS.gene007033.t1 MTR_1g054310 94.737 209 7 3 1 207 33 239 8.99e-141 392
MS.gene007033.t1 MTR_0515s0010 90.789 76 7 0 46 121 5 80 5.87e-47 149
MS.gene007033.t1 MTR_0306s0010 90.789 76 7 0 46 121 5 80 5.87e-47 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007033.t1 AT2G37270 88.557 201 22 1 8 207 7 207 6.04e-132 369
MS.gene007033.t1 AT2G37270 88.557 201 22 1 8 207 7 207 6.04e-132 369
MS.gene007033.t1 AT3G11940 89.529 191 20 0 17 207 17 207 2.30e-130 365
MS.gene007033.t1 AT3G11940 89.529 191 20 0 17 207 17 207 2.30e-130 365
MS.gene007033.t1 ATCG01240 34.532 139 78 5 71 207 22 149 9.93e-11 58.2
MS.gene007033.t1 ATCG00900 34.532 139 78 5 71 207 22 149 9.93e-11 58.2

Find 57 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTATGCGATCAAGAAAA+AGG 0.316264 7.1:+5892508 MS.gene007033:intron
GCATCAACTATAACTTGAAT+TGG 0.326315 7.1:-5889775 None:intergenic
TCCTCTTCGTCGGGTTAATC+AGG 0.327028 7.1:+5892272 MS.gene007033:CDS
GAGCTTGACTTCGTTTAGAT+TGG 0.348914 7.1:-5889034 None:intergenic
ACCAGTTGTTAGAAGATATA+TGG 0.352278 7.1:-5892295 None:intergenic
AGAGAAGATGCAACCAGAAT+TGG 0.353281 7.1:+5892210 MS.gene007033:CDS
ATGGAGCTTCGACGACGTTC+AGG 0.358685 7.1:+5889065 MS.gene007033:CDS
GTGCCCGTGAAGCTGCATTT+AGG 0.361118 7.1:+5892316 MS.gene007033:CDS
TTGGATCTGCTGGAGTTGTT+AGG 0.369348 7.1:+5892229 MS.gene007033:CDS
AGGAACATATGTTGCATGTT+TGG 0.372138 7.1:-5889581 None:intergenic
GCCATATATCTTCTAACAAC+TGG 0.404354 7.1:+5892294 MS.gene007033:CDS
GGTACTCAAAGAAGCGCTTC+AGG 0.411900 7.1:+5889617 MS.gene007033:CDS
AGCTTGACTTCGTTTAGATT+GGG 0.412691 7.1:-5889033 None:intergenic
GAAAGAAACTCATGGCTGTT+AGG 0.417495 7.1:+5889704 MS.gene007033:CDS
CAGATTACCGATCTGTCTCT+TGG 0.434208 7.1:+5889535 MS.gene007033:intron
AGATTACCGATCTGTCTCTT+GGG 0.440013 7.1:+5889536 MS.gene007033:intron
GCAACCAGAATTGGATCTGC+TGG 0.442717 7.1:+5892219 MS.gene007033:CDS
TGGATATCTCTCCTCTTCGT+CGG 0.449849 7.1:+5892262 MS.gene007033:CDS
TAGTTGATGCTGTCGTCAAC+AGG 0.451278 7.1:+5889788 MS.gene007033:CDS
TGCTGGAGTTGTTAGGAGGC+AGG 0.469034 7.1:+5892236 MS.gene007033:CDS
TGATGCTTAACGATTGGCCT+TGG 0.471931 7.1:-5892549 None:intergenic
AGATTGGGATCAACTTCGAC+TGG 0.475242 7.1:-5889018 None:intergenic
CTGCCAAGGGTTCATCCAAC+AGG 0.475684 7.1:+5892385 MS.gene007033:CDS
ATTCTGGTTGCATCTTCTCT+AGG 0.476377 7.1:-5892207 None:intergenic
TGTTCCTAAATGCAGCTTCA+CGG 0.488373 7.1:-5892320 None:intergenic
CTGTCTCTTGGGGATTACAT+TGG 0.493111 7.1:+5889547 MS.gene007033:CDS
AACTCCAGCAGATCCAATTC+TGG 0.495047 7.1:-5892223 None:intergenic
TCCAAATGATGCTTAACGAT+TGG 0.503018 7.1:-5892555 None:intergenic
TAAGACAATTGCTGAATGCT+TGG 0.507627 7.1:+5892344 MS.gene007033:CDS
GGATATCTCTCCTCTTCGTC+GGG 0.512011 7.1:+5892263 MS.gene007033:CDS
GTTCCTAAATGCAGCTTCAC+GGG 0.512374 7.1:-5892319 None:intergenic
AGTTGTTAGGAGGCAGGCTG+TGG 0.516790 7.1:+5892242 MS.gene007033:CDS
ACATATGTTCCTCACACTGC+TGG 0.521105 7.1:+5889592 MS.gene007033:CDS
GGGGATTACATTGGAGCAAG+AGG 0.537561 7.1:+5889556 MS.gene007033:CDS
GAACGTCGTCGAAGCTCCAT+TGG 0.540472 7.1:-5889062 None:intergenic
TTAGTGAGCCTCTCAACAAT+GGG 0.543323 7.1:-5889652 None:intergenic
TGAGATTGAGAGAGTTGCCA+AGG 0.553654 7.1:+5892532 MS.gene007033:CDS
ATACCTGTTGGATGAACCCT+TGG 0.559348 7.1:-5892388 None:intergenic
GATCTGCTGGAGTTGTTAGG+AGG 0.561323 7.1:+5892232 MS.gene007033:CDS
TGAACTCATTAACGCTGCCA+AGG 0.562075 7.1:+5892371 MS.gene007033:CDS
GTTAGTGAGCCTCTCAACAA+TGG 0.562680 7.1:-5889653 None:intergenic
AAGTCAAGCTCTTCAACCAA+TGG 0.580728 7.1:+5889046 MS.gene007033:CDS
CTCAGTGTCCCATTGTTGAG+AGG 0.591866 7.1:+5889644 MS.gene007033:CDS
GATTGGGATCAACTTCGACT+GGG 0.607523 7.1:-5889017 None:intergenic
GATTACCGATCTGTCTCTTG+GGG 0.611070 7.1:+5889537 MS.gene007033:intron
GTAATCCCCAAGAGACAGAT+CGG 0.613626 7.1:-5889542 None:intergenic
GAACTCATTAACGCTGCCAA+GGG 0.615553 7.1:+5892372 MS.gene007033:CDS
ATGATGCACGGCAGAAACAA+CGG 0.618587 7.1:+5889682 MS.gene007033:CDS
TAGGATCATTAAGCATGCCA+TGG 0.620948 7.1:+5889723 MS.gene007033:CDS
GCCTGATTAACCCGACGAAG+AGG 0.622409 7.1:-5892273 None:intergenic
AGCGACGGTTTCATCAGCCA+TGG 0.634868 7.1:-5888992 None:intergenic
TAGCAAGTGAATGATCTCCA+TGG 0.641966 7.1:-5889740 None:intergenic
AAACAACGGAAAGAAACTCA+TGG 0.646751 7.1:+5889696 MS.gene007033:CDS
ATGTTCCTCACACTGCTGGT+AGG 0.649707 7.1:+5889596 MS.gene007033:CDS
ACTAACTCTCTCATGATGCA+CGG 0.651624 7.1:+5889670 MS.gene007033:CDS
AACTTCGACTGGGATAGCGA+CGG 0.675722 7.1:-5889007 None:intergenic
GAGTACCTACCAGCAGTGTG+AGG 0.691601 7.1:-5889601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTTGAATTATTATTAAT+TGG + chr7.1:5890482-5890501 MS.gene007033:intron 10.0%
!!! AATACTTTTTTGAATATTTA+AGG + chr7.1:5891817-5891836 MS.gene007033:intron 10.0%
!!! AATTATATTATTTTATGTAG+TGG + chr7.1:5892183-5892202 MS.gene007033:intron 10.0%
!!! ATACTTTTTTGAATATTTAA+GGG + chr7.1:5891818-5891837 MS.gene007033:intron 10.0%
!!! TTTCAATAAATATTTTATCT+TGG + chr7.1:5891070-5891089 MS.gene007033:intron 10.0%
!! AATTTATCTGTTTACATATA+GGG - chr7.1:5891249-5891268 None:intergenic 15.0%
!! TAAAATAAAAAAACCCATTA+AGG - chr7.1:5889448-5889467 None:intergenic 15.0%
!! TAATTTATCTGTTTACATAT+AGG - chr7.1:5891250-5891269 None:intergenic 15.0%
!!! AAACTTTAAAGATTGAATAA+TGG - chr7.1:5892418-5892437 None:intergenic 15.0%
!!! ATAAATCAACTTGAATTTTT+TGG + chr7.1:5890121-5890140 MS.gene007033:intron 15.0%
!!! GCTATTTTCATAATTTATAT+TGG + chr7.1:5889294-5889313 MS.gene007033:intron 15.0%
!!! GTTTTTAAATTGTTAAAACT+GGG + chr7.1:5890517-5890536 MS.gene007033:intron 15.0%
!!! TGTTTTTAAATTGTTAAAAC+TGG + chr7.1:5890516-5890535 MS.gene007033:intron 15.0%
!! AATAATATGAAACAGATCAA+TGG - chr7.1:5889922-5889941 None:intergenic 20.0%
!! AGTCAATATATATCAATCAT+AGG - chr7.1:5889845-5889864 None:intergenic 20.0%
!! ATGATTTATTATTTCCCTAT+TGG + chr7.1:5891232-5891251 MS.gene007033:intron 20.0%
!! GATTACAATATGACAAAATA+AGG - chr7.1:5891034-5891053 None:intergenic 20.0%
!! GTATAAGTGATCAAATATAT+AGG + chr7.1:5890659-5890678 MS.gene007033:intron 20.0%
!! GTCAATATATATCAATCATA+GGG - chr7.1:5889844-5889863 None:intergenic 20.0%
!! TATTAACAATTAACTGTGTA+TGG + chr7.1:5892018-5892037 MS.gene007033:intron 20.0%
!! TCACTTATACATAACAAATA+AGG - chr7.1:5890649-5890668 None:intergenic 20.0%
!! TGTCATATTGTAATCAAATT+TGG + chr7.1:5891039-5891058 MS.gene007033:intron 20.0%
!! TTTATAGCATTATAACTACA+TGG - chr7.1:5890707-5890726 None:intergenic 20.0%
!!! ATGATTATTTGTTTTCCTAT+TGG + chr7.1:5890001-5890020 MS.gene007033:intron 20.0%
!!! ATGCTATAAATATTTTGTGA+TGG + chr7.1:5890717-5890736 MS.gene007033:intron 20.0%
!!! ATTTTAATAAAACAAAGTCC+AGG - chr7.1:5890347-5890366 None:intergenic 20.0%
!!! TGTTTTGTGATCAAATATAT+AGG + chr7.1:5890742-5890761 MS.gene007033:intron 20.0%
!!! TTGAAATTGAATTTTTGATG+CGG + chr7.1:5889941-5889960 MS.gene007033:intron 20.0%
! AATCTAAATAGGTCCTTAAT+GGG + chr7.1:5889432-5889451 MS.gene007033:intron 25.0%
! ACATATCCTAAAACTAAAAC+TGG - chr7.1:5892149-5892168 None:intergenic 25.0%
! AGAAAACAAATTCAGTACAT+TGG - chr7.1:5892441-5892460 None:intergenic 25.0%
! AGTAATCAATTAATCATGCA+TGG + chr7.1:5891094-5891113 MS.gene007033:intron 25.0%
! ATTAAAGTAGTAAAGTGTGA+AGG + chr7.1:5891283-5891302 MS.gene007033:intron 25.0%
! ATTGAAAGGAGAAAATGAAA+TGG - chr7.1:5891973-5891992 None:intergenic 25.0%
! CGAGAAACAAATTGTAAATA+AGG + chr7.1:5892064-5892083 MS.gene007033:intron 25.0%
! GAAAAAAGTGACAAATGATA+AGG - chr7.1:5890079-5890098 None:intergenic 25.0%
! GATGATTTATTGTTTCCTAT+TGG + chr7.1:5890572-5890591 MS.gene007033:intron 25.0%
! TAAATCATCATTTCATTCTC+CGG - chr7.1:5890561-5890580 None:intergenic 25.0%
! TCAAATAAGCCAATCTAAAT+AGG + chr7.1:5889421-5889440 MS.gene007033:intron 25.0%
! TGATTAATACTTGATAGAGA+AGG + chr7.1:5890845-5890864 MS.gene007033:intron 25.0%
! TTAATTCAAAGCAAAAACTG+AGG + chr7.1:5892104-5892123 MS.gene007033:intron 25.0%
! TTGTTTATTCTCACTTTGTT+TGG + chr7.1:5890438-5890457 MS.gene007033:intron 25.0%
!! CTTTAAAGATTGAATAATGG+TGG - chr7.1:5892415-5892434 None:intergenic 25.0%
!! GTAATTTTTACTTGTACGAA+AGG + chr7.1:5891139-5891158 MS.gene007033:intron 25.0%
!!! AAGTTTGAAATCTTTTCTTG+TGG + chr7.1:5891653-5891672 MS.gene007033:intron 25.0%
!!! AATTGTTTGTTTTTTTCCTC+TGG + chr7.1:5891614-5891633 MS.gene007033:intron 25.0%
!!! ACTATTTTAGCTGTTAAGAT+TGG + chr7.1:5890901-5890920 MS.gene007033:intron 25.0%
!!! CTATTTTAGCTGTTAAGATT+GGG + chr7.1:5890902-5890921 MS.gene007033:intron 25.0%
!!! GATGATTTTTTGTTTCCTAT+TGG + chr7.1:5890957-5890976 MS.gene007033:intron 25.0%
!!! TATTTTAGCTGTTAAGATTG+GGG + chr7.1:5890903-5890922 MS.gene007033:intron 25.0%
!!! TATTTTCAAGTAACTCATGT+CGG + chr7.1:5889389-5889408 MS.gene007033:intron 25.0%
!!! TTAAGAATTTTGACAATGCA+TGG + chr7.1:5890160-5890179 MS.gene007033:intron 25.0%
AATACTTGATAGAGAAGGAT+AGG + chr7.1:5890850-5890869 MS.gene007033:intron 30.0%
AATCTTGCATCATTACTACA+AGG - chr7.1:5891589-5891608 None:intergenic 30.0%
ACAGCCATAGTTATCAATAT+TGG + chr7.1:5891458-5891477 MS.gene007033:intron 30.0%
ACATGCATTATTACTGTTGA+GGG - chr7.1:5890374-5890393 None:intergenic 30.0%
ACCAGTTGTTAGAAGATATA+TGG - chr7.1:5892298-5892317 None:intergenic 30.0%
ATACAAAAACGTCATCATCT+AGG - chr7.1:5890606-5890625 None:intergenic 30.0%
ATCCTAAAACTAAAACTGGT+TGG - chr7.1:5892145-5892164 None:intergenic 30.0%
ATCTTGCATCATTACTACAA+GGG - chr7.1:5891588-5891607 None:intergenic 30.0%
ATTCAGGTATTCAAACCAAT+AGG - chr7.1:5890019-5890038 None:intergenic 30.0%
CAATCTAAATAGGTCCTTAA+TGG + chr7.1:5889431-5889450 MS.gene007033:intron 30.0%
CAGCCATAGTTATCAATATT+GGG + chr7.1:5891459-5891478 MS.gene007033:intron 30.0%
CATTAAGGACCTATTTAGAT+TGG - chr7.1:5889433-5889452 None:intergenic 30.0%
CTGCTTAATATGTCTTGATT+TGG + chr7.1:5889967-5889986 MS.gene007033:intron 30.0%
GCATCAACTATAACTTGAAT+TGG - chr7.1:5889778-5889797 None:intergenic 30.0%
GGGAAAATAACAAAATGCAA+AGG - chr7.1:5889824-5889843 None:intergenic 30.0%
TACAAAAAATGCCATCATTC+AGG - chr7.1:5890035-5890054 None:intergenic 30.0%
TCAGATAGAGCTAATACAAA+AGG - chr7.1:5890049-5890068 None:intergenic 30.0%
TCCTAAAACTAAAACTGGTT+GGG - chr7.1:5892144-5892163 None:intergenic 30.0%
TTGATTTACTGTTTCCCTAT+TGG + chr7.1:5890270-5890289 MS.gene007033:intron 30.0%
! CAACCCAATATTGATAACTA+TGG - chr7.1:5891465-5891484 None:intergenic 30.0%
!! GTACTGAATTTGTTTTCTCT+TGG + chr7.1:5892443-5892462 MS.gene007033:intron 30.0%
!! TTGTTTCCTATTGGTTTGAT+TGG + chr7.1:5890581-5890600 MS.gene007033:intron 30.0%
!!! ATTTTAGCTGTTAAGATTGG+GGG + chr7.1:5890904-5890923 MS.gene007033:intron 30.0%
AAACAACGGAAAGAAACTCA+TGG + chr7.1:5889696-5889715 MS.gene007033:CDS 35.0%
AACAAGTTGTTCATCCAAAC+AGG - chr7.1:5889208-5889227 None:intergenic 35.0%
AATAATGGTGGTATACCTGT+TGG - chr7.1:5892403-5892422 None:intergenic 35.0%
AATACAAAATGCCATCATCC+AGG - chr7.1:5891768-5891787 None:intergenic 35.0%
AATCCTACCCAAATTACACA+CGG - chr7.1:5891878-5891897 None:intergenic 35.0%
AATTGTCACAGCTTAAGCTT+TGG + chr7.1:5891428-5891447 MS.gene007033:intron 35.0%
ACAAGTTGTTCATCCAAACA+GGG - chr7.1:5889207-5889226 None:intergenic 35.0%
AGCTTGACTTCGTTTAGATT+GGG - chr7.1:5889036-5889055 None:intergenic 35.0%
AGGAACATATGTTGCATGTT+TGG - chr7.1:5889584-5889603 None:intergenic 35.0%
ATACAAAAATGCCATCATGC+AGG - chr7.1:5890304-5890323 None:intergenic 35.0%
ATCTAGCCAATCAAACCAAT+AGG - chr7.1:5890975-5890994 None:intergenic 35.0%
ATCTAGGCAATCAAACCAAT+AGG - chr7.1:5890590-5890609 None:intergenic 35.0%
CACATGCATTATTACTGTTG+AGG - chr7.1:5890375-5890394 None:intergenic 35.0%
CTATAGAAATAAGCCCTGTT+TGG + chr7.1:5889191-5889210 MS.gene007033:intron 35.0%
GCCATATATCTTCTAACAAC+TGG + chr7.1:5892294-5892313 MS.gene007033:CDS 35.0%
GTGACAAATGATAAGGAGAA+TGG - chr7.1:5890072-5890091 None:intergenic 35.0%
TAAGACAATTGCTGAATGCT+TGG + chr7.1:5892344-5892363 MS.gene007033:CDS 35.0%
TAAGCAATAAACATCACCAG+AGG - chr7.1:5891633-5891652 None:intergenic 35.0%
TCTCAGCACATAACATTGAA+AGG - chr7.1:5891987-5892006 None:intergenic 35.0%
TCTTGCATCATTACTACAAG+GGG - chr7.1:5891587-5891606 None:intergenic 35.0%
TGGTTTGAATACCTGAATGA+TGG + chr7.1:5890021-5890040 MS.gene007033:intron 35.0%
TGTTAGCAAAGAACCAAACA+AGG - chr7.1:5892475-5892494 None:intergenic 35.0%
! CTCTTGGATTTTTCCTTGTT+TGG + chr7.1:5892459-5892478 MS.gene007033:intron 35.0%
! GAAATCTTTTCTTGTGGTAG+AGG + chr7.1:5891659-5891678 MS.gene007033:intron 35.0%
!! CAAACAGGGCTTATTTCTAT+AGG - chr7.1:5889193-5889212 None:intergenic 35.0%
!! TAGGTGGGTTGGTTATTAAT+TGG + chr7.1:5890869-5890888 MS.gene007033:intron 35.0%
!!! TACAACTAGCTTTTGATTGC+TGG + chr7.1:5891192-5891211 MS.gene007033:intron 35.0%
!!! TCCCAACCAGTTTTAGTTTT+AGG + chr7.1:5892140-5892159 MS.gene007033:intron 35.0%
AAGTCAAGCTCTTCAACCAA+TGG + chr7.1:5889046-5889065 MS.gene007033:CDS 40.0%
AATACAAAAGGCCATCATCC+TGG - chr7.1:5891492-5891511 None:intergenic 40.0%
AATTACACACGGCATCATCT+AGG - chr7.1:5891867-5891886 None:intergenic 40.0%
ACCTACTTACTCATCCGAAT+CGG + chr7.1:5890235-5890254 MS.gene007033:intron 40.0%
ACTAACTCTCTCATGATGCA+CGG + chr7.1:5889670-5889689 MS.gene007033:CDS 40.0%
ACTTGATAGAGAAGGATAGG+TGG + chr7.1:5890853-5890872 MS.gene007033:intron 40.0%
AGAGAAGATGCAACCAGAAT+TGG + chr7.1:5892210-5892229 MS.gene007033:CDS 40.0%
AGATGATGCCGTGTGTAATT+TGG + chr7.1:5891867-5891886 MS.gene007033:intron 40.0%
AGATTACCGATCTGTCTCTT+GGG + chr7.1:5889536-5889555 MS.gene007033:intron 40.0%
ATCCAGGCAATCAAACCAAT+AGG - chr7.1:5891752-5891771 None:intergenic 40.0%
ATGCAGGCAATCAAACCAAT+AGG - chr7.1:5890288-5890307 None:intergenic 40.0%
ATTACACACGGCATCATCTA+GGG - chr7.1:5891866-5891885 None:intergenic 40.0%
CAGCTATGCGATCAAGAAAA+AGG + chr7.1:5892508-5892527 MS.gene007033:intron 40.0%
CTTGATAGAGAAGGATAGGT+GGG + chr7.1:5890854-5890873 MS.gene007033:intron 40.0%
GAAAGAAACTCATGGCTGTT+AGG + chr7.1:5889704-5889723 MS.gene007033:CDS 40.0%
GAGCTTGACTTCGTTTAGAT+TGG - chr7.1:5889037-5889056 None:intergenic 40.0%
GATGATGCCGTGTGTAATTT+GGG + chr7.1:5891868-5891887 MS.gene007033:intron 40.0%
TAGCAAGTGAATGATCTCCA+TGG - chr7.1:5889743-5889762 None:intergenic 40.0%
TAGGATCATTAAGCATGCCA+TGG + chr7.1:5889723-5889742 MS.gene007033:CDS 40.0%
TCAAAGCAAAAACTGAGGCT+TGG + chr7.1:5892109-5892128 MS.gene007033:intron 40.0%
TCCAGGCAATCAAACCAATA+GGG - chr7.1:5891751-5891770 None:intergenic 40.0%
TGCAGGCAATCAAACCAATA+GGG - chr7.1:5890287-5890306 None:intergenic 40.0%
TGTTCCTAAATGCAGCTTCA+CGG - chr7.1:5892323-5892342 None:intergenic 40.0%
TTAGTGAGCCTCTCAACAAT+GGG - chr7.1:5889655-5889674 None:intergenic 40.0%
! AACTTTTCATCCTCCCGATT+CGG - chr7.1:5890252-5890271 None:intergenic 40.0%
! ATTCTGGTTGCATCTTCTCT+AGG - chr7.1:5892210-5892229 None:intergenic 40.0%
! GAGCTGTTGATTGTTTGAAC+TGG + chr7.1:5890539-5890558 MS.gene007033:intron 40.0%
! TGGTTTGATTGGCTAGATGA+TGG + chr7.1:5890977-5890996 MS.gene007033:intron 40.0%
!! TAGCTTTTGATTGCTGGAAC+CGG + chr7.1:5891198-5891217 MS.gene007033:intron 40.0%
!! TCAATATTGGGTTGATAGCC+AGG + chr7.1:5891471-5891490 MS.gene007033:intron 40.0%
AACTCCAGCAGATCCAATTC+TGG - chr7.1:5892226-5892245 None:intergenic 45.0%
ACATATGTTCCTCACACTGC+TGG + chr7.1:5889592-5889611 MS.gene007033:CDS 45.0%
AGATTGGGATCAACTTCGAC+TGG - chr7.1:5889021-5889040 None:intergenic 45.0%
ATACCTGTTGGATGAACCCT+TGG - chr7.1:5892391-5892410 None:intergenic 45.0%
ATAGAGAAGGATAGGTGGGT+TGG + chr7.1:5890858-5890877 MS.gene007033:intron 45.0%
ATGATGCACGGCAGAAACAA+CGG + chr7.1:5889682-5889701 MS.gene007033:CDS 45.0%
ATGCCGTGTGTAATTTGGGT+AGG + chr7.1:5891872-5891891 MS.gene007033:intron 45.0%
CAAGAGACAGATCGGTAATC+TGG - chr7.1:5889537-5889556 None:intergenic 45.0%
CAGATTACCGATCTGTCTCT+TGG + chr7.1:5889535-5889554 MS.gene007033:intron 45.0%
CCTACTTACTCATCCGAATC+GGG + chr7.1:5890236-5890255 MS.gene007033:intron 45.0%
CTGTCTCTTGGGGATTACAT+TGG + chr7.1:5889547-5889566 MS.gene007033:CDS 45.0%
GAACTCATTAACGCTGCCAA+GGG + chr7.1:5892372-5892391 MS.gene007033:CDS 45.0%
GATTACCGATCTGTCTCTTG+GGG + chr7.1:5889537-5889556 MS.gene007033:intron 45.0%
GATTGGGATCAACTTCGACT+GGG - chr7.1:5889020-5889039 None:intergenic 45.0%
GCTCTATCTGATCATTCTCC+TGG + chr7.1:5890326-5890345 MS.gene007033:intron 45.0%
GTAATCCCCAAGAGACAGAT+CGG - chr7.1:5889545-5889564 None:intergenic 45.0%
GTTAGTGAGCCTCTCAACAA+TGG - chr7.1:5889656-5889675 None:intergenic 45.0%
GTTCCTAAATGCAGCTTCAC+GGG - chr7.1:5892322-5892341 None:intergenic 45.0%
TAAGATTGGGGGCTGTTGAT+TGG + chr7.1:5890915-5890934 MS.gene007033:intron 45.0%
TGAACTCATTAACGCTGCCA+AGG + chr7.1:5892371-5892390 MS.gene007033:CDS 45.0%
TGAGATTGAGAGAGTTGCCA+AGG + chr7.1:5892532-5892551 MS.gene007033:CDS 45.0%
TGGATATCTCTCCTCTTCGT+CGG + chr7.1:5892262-5892281 MS.gene007033:CDS 45.0%
TGGTTTGATTGCCTGCATGA+TGG + chr7.1:5890290-5890309 MS.gene007033:intron 45.0%
TGGTTTGATTGCCTGGATGA+TGG + chr7.1:5891754-5891773 MS.gene007033:intron 45.0%
TTGGATCTGCTGGAGTTGTT+AGG + chr7.1:5892229-5892248 MS.gene007033:CDS 45.0%
! TAGTTGATGCTGTCGTCAAC+AGG + chr7.1:5889788-5889807 MS.gene007033:CDS 45.0%
!! TCCCTATTGGTTTGATTGCC+TGG + chr7.1:5890283-5890302 MS.gene007033:intron 45.0%
AACTTCGACTGGGATAGCGA+CGG - chr7.1:5889010-5889029 None:intergenic 50.0%
ACTTACTCATCCGAATCGGG+AGG + chr7.1:5890239-5890258 MS.gene007033:intron 50.0%
ATGTTCCTCACACTGCTGGT+AGG + chr7.1:5889596-5889615 MS.gene007033:CDS 50.0%
CTCAGTGTCCCATTGTTGAG+AGG + chr7.1:5889644-5889663 MS.gene007033:CDS 50.0%
GATCTGCTGGAGTTGTTAGG+AGG + chr7.1:5892232-5892251 MS.gene007033:CDS 50.0%
GCAACCAGAATTGGATCTGC+TGG + chr7.1:5892219-5892238 MS.gene007033:CDS 50.0%
GGATATCTCTCCTCTTCGTC+GGG + chr7.1:5892263-5892282 MS.gene007033:CDS 50.0%
GGGGATTACATTGGAGCAAG+AGG + chr7.1:5889556-5889575 MS.gene007033:CDS 50.0%
TCCTCTTCGTCGGGTTAATC+AGG + chr7.1:5892272-5892291 MS.gene007033:CDS 50.0%
! ATTGGGGGCTGTTGATTGGT+TGG + chr7.1:5890919-5890938 MS.gene007033:intron 50.0%
!! CCCGATTCGGATGAGTAAGT+AGG - chr7.1:5890239-5890258 None:intergenic 50.0%
!! GGTACTCAAAGAAGCGCTTC+AGG + chr7.1:5889617-5889636 MS.gene007033:CDS 50.0%
!! TGGGTTGATAGCCAGGATGA+TGG + chr7.1:5891478-5891497 MS.gene007033:intron 50.0%
AGTTGTTAGGAGGCAGGCTG+TGG + chr7.1:5892242-5892261 MS.gene007033:CDS 55.0%
ATGGAGCTTCGACGACGTTC+AGG + chr7.1:5889065-5889084 MS.gene007033:CDS 55.0%
CTGCCAAGGGTTCATCCAAC+AGG + chr7.1:5892385-5892404 MS.gene007033:CDS 55.0%
GAACGTCGTCGAAGCTCCAT+TGG - chr7.1:5889065-5889084 None:intergenic 55.0%
GAGTACCTACCAGCAGTGTG+AGG - chr7.1:5889604-5889623 None:intergenic 55.0%
GCCTGATTAACCCGACGAAG+AGG - chr7.1:5892276-5892295 None:intergenic 55.0%
GTGCCCGTGAAGCTGCATTT+AGG + chr7.1:5892316-5892335 MS.gene007033:CDS 55.0%
TGCTGGAGTTGTTAGGAGGC+AGG + chr7.1:5892236-5892255 MS.gene007033:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 5888994 5892565 5888994 ID=MS.gene007033
chr7.1 mRNA 5888994 5892565 5888994 ID=MS.gene007033.t1;Parent=MS.gene007033
chr7.1 exon 5888994 5889086 5888994 ID=MS.gene007033.t1.exon1;Parent=MS.gene007033.t1
chr7.1 CDS 5888994 5889086 5888994 ID=cds.MS.gene007033.t1;Parent=MS.gene007033.t1
chr7.1 exon 5889538 5889809 5889538 ID=MS.gene007033.t1.exon2;Parent=MS.gene007033.t1
chr7.1 CDS 5889538 5889809 5889538 ID=cds.MS.gene007033.t1;Parent=MS.gene007033.t1
chr7.1 exon 5892203 5892406 5892203 ID=MS.gene007033.t1.exon3;Parent=MS.gene007033.t1
chr7.1 CDS 5892203 5892406 5892203 ID=cds.MS.gene007033.t1;Parent=MS.gene007033.t1
chr7.1 exon 5892511 5892565 5892511 ID=MS.gene007033.t1.exon4;Parent=MS.gene007033.t1
chr7.1 CDS 5892511 5892565 5892511 ID=cds.MS.gene007033.t1;Parent=MS.gene007033.t1
Gene Sequence

>MS.gene007033

ATGGCTGATGAAACCGTCGCTATCCCAGTCGAAGTTGATCCCAATCTAAACGAAGTCAAGCTCTTCAACCAATGGAGCTTCGACGACGTTCAGGTATTCTTTTCTTTCTATCACTTTTTGATTTATTATTTGTTTGCTATCTCGTATCGTAGAATCTGAATCTCAGAACGCATTTCAATTTACACTAATTTTTTTTCCTATAGAAATAAGCCCTGTTTGGATGAACAACTTGTTTTCAGTTATAAGCTAAACTCTATAGCAAAAATATAATAAAGAATGATTATTTGTTTTAAGTTATAAGCTATTTTCATAATTTATATTGGAGAGCTTATGAAAATCAGTAACTCATGTTAGTAAGTGTGCATTGTGTTTTAGTAATATGTCATAATTTGTTTTATTTTCAAGTAACTCATGTCGGTAGATAAACTCAAATAAGCCAATCTAAATAGGTCCTTAATGGGTTTTTTTATTTTATTGTGTTAGTAAGTGTGCATTGTGTTTTAGTAATATGTTGTGATTAATTTTGCAATTTTTGTTATACCAGATTACCGATCTGTCTCTTGGGGATTACATTGGAGCAAGAGGATCCAAACATGCAACATATGTTCCTCACACTGCTGGTAGGTACTCAAAGAAGCGCTTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCACGGCAGAAACAACGGAAAGAAACTCATGGCTGTTAGGATCATTAAGCATGCCATGGAGATCATTCACTTGCTAACTGATCAGAATCCAATTCAAGTTATAGTTGATGCTGTCGTCAACAGGTATGATGATGCCTTTGCATTTTGTTATTTTCCCTATGATTGATATATATTGACTGTTGAACGAGAAGTGAAGTAAGCTTTAACAAGATATACTGTACTGTGAAAAGTACCATTGATCTGTTTCATATTATTTGAAATTGAATTTTTGATGCGGTAACTGCTTAATATGTCTTGATTTGGAGAATGAAATGATGATTATTTGTTTTCCTATTGGTTTGAATACCTGAATGATGGCATTTTTTGTATTAGCTCTATCTGACCATTCTCCTTATCATTTGTCACTTTTTTCAGTTATATTTTTATTAACGATAATAAATCAACTTGAATTTTTTGGTTTATGTGTTTGTTCTTTAAGAATTTTGACAATGCATGGTAATATCAAACAAGCATGACACTGTTATATAAACTCTGATGTAGCAAACTTGACCTACTTACTCATCCGAATCGGGAGGATGAAAAGTTGATTTACTGTTTCCCTATTGGTTTGATTGCCTGCATGATGGCATTTTTGTATTAGCTCTATCTGATCATTCTCCTGGACTTTGTTTTATTAAAATATTACCCTCAACAGTAATAATGCATGTGACAATTTGTGTTTTTTTTTCATTGTGATGCTATTACTTGAACTTTGTTTATTCTCACTTTGTTTGGTTATTCACATGAAATAGTATGATAGTTGAATTATTATTAATTGGTATACTGCAACTGTTTTTAAATTGTTAAAACTGGGAGCTGTTGATTGTTTGAACTGGAGAATGAAATGATGATTTATTGTTTCCTATTGGTTTGATTGCCTAGATGATGACGTTTTTGTATTAGCTCTATCTGATCAATCTCCTTATTTGTTATGTATAAGTGATCAAATATATAGGCTGTGTTTTAAGAAAATACTTTCCATGTAGTTATAATGCTATAAATATTTTGTGATGGTTTGTTTTGTGATCAAATATATAGGCTGTGTTTTAAGAAAATACTTTCCATGTAGTTATAATGCTATAAATATTTTGTGATGGTTTGTTTTGTTTTCGTTGTGTTTGATTAATACTTGATAGAGAAGGATAGGTGGGTTGGTTATTAATTGGTATGTTTGAACTATTTTAGCTGTTAAGATTGGGGGCTGTTGATTGGTTGGTCTGTAGAATGAAATGATGATTTTTTGTTTCCTATTGGTTTGATTGGCTAGATGATGGCATTTTTGTATTAGCTCTATTTGATCATTCTCCTTATTTTGTCATATTGTAATCAAATTTGGAGATTTCATTTCAATAAATATTTTATCTTGGTAGTAATCAATTAATCATGCATGGAAGTTTTTATTGCGTAAAGTTTGTAATTTTTACTTGTACGAAAGGAAAGCAGATGCACGCTGCAAGTTGTTTTTATACAACTAGCTTTTGATTGCTGGAACCGGAGAATGAAATGATGATTTATTATTTCCCTATATGTAAACAGATAAATTAGAGAAATACGAACATTAAAGTAGTAAAGTGTGAAGGAAAAATGCAACACAACACATAAACAAACAAAAAAAAAAACAAAAAACAAAAAAATCAAACAAAATGCGCATAGTTATCATTAGTATTCATTTGATAGCGCTATCAATTTCAATAGTTAGCAAAATTGTCACAGCTTAAGCTTTGGACAACACACAGCCATAGTTATCAATATTGGGTTGATAGCCAGGATGATGGCCTTTTGTATTAGCTCTATCTGATCATTCTCCTTATTTTGTCATATTGTAATCAAATATCTTGAGTTTGTTTAAAAACATTTTCCCCTTGTAGTAATGATGCAAGATTTTTATAATTGTTTGTTTTTTTCCTCTGGTGATGTTTATTGCTTAAAGTTTGAAATCTTTTCTTGTGGTAGAGGAAATGAATCTGTTATCATAAGATAGTTTTCAATTGATCTTGAGAATGAAATGATGATTTATTATTTCCCTATTGGTTTGATTGCCTGGATGATGGCATTTTGTATTAGCTCTATCTGATCATTCTCTTAATTAATAATACTTTTTTGAATATTTAAGGGATTTGAAAATAAAAGTCTTTCACCCTAGATGATGCCGTGTGTAATTTGGGTAGGATTCAGTTAAAGTTATGTTTTTTTTTTTTTTAACATACGTTGTTTCTACGTTTTTACTTTCAATGTCATAAGTGTCCATTTCATTTTCTCCTTTCAATGTTATGTGCTGAGATACAAAATTCTTATTAACAATTAACTGTGTATGGTCTTCTGTGAAAAACTTTTTGAGCGAGAAACAAATTGTAAATAAGGTTGTTTACATGATTTTATTAATTCAAAGCAAAAACTGAGGCTTGGATCATATTTCCCAACCAGTTTTAGTTTTAGGATATGTAATCTGATTTGTTCAATTATATTATTTTATGTAGTGGTCCTAGAGAAGATGCAACCAGAATTGGATCTGCTGGAGTTGTTAGGAGGCAGGCTGTGGATATCTCTCCTCTTCGTCGGGTTAATCAGGCCATATATCTTCTAACAACTGGTGCCCGTGAAGCTGCATTTAGGAACATTAAGACAATTGCTGAATGCTTGGCTGATGAACTCATTAACGCTGCCAAGGGTTCATCCAACAGGTATACCACCATTATTCAATCTTTAAAGTTTCCAATGTACTGAATTTGTTTTCTCTTGGATTTTTCCTTGTTTGGTTCTTTGCTAACAAAATGTATCATTTCAGCTATGCGATCAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTAA
Protein sequence

>MS.gene007033.t1

MADETVAIPVEVDPNLNEVKLFNQWSFDDVQITDLSLGDYIGARGSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR