AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070601.t1 MTR_1g054310 98.326 239 4 0 1 239 1 239 2.15e-176 484
MS.gene070601.t1 MTR_7g107380 97.000 200 4 1 40 239 9 206 1.01e-141 395
MS.gene070601.t1 MTR_0515s0010 89.744 78 8 0 76 153 3 80 6.95e-47 150
MS.gene070601.t1 MTR_0306s0010 89.744 78 8 0 76 153 3 80 6.95e-47 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070601.t1 AT2G37270 92.105 190 14 1 51 239 18 207 4.09e-129 363
MS.gene070601.t1 AT2G37270 92.105 190 14 1 51 239 18 207 4.09e-129 363
MS.gene070601.t1 AT3G11940 90.000 190 18 1 51 239 18 207 2.91e-127 358
MS.gene070601.t1 AT3G11940 90.000 190 18 1 51 239 18 207 2.91e-127 358

Find 57 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCAATGCACCAAAATT+AGG 0.162365 1.1:-42188796 MS.gene070601:CDS
GCATCAACAATGACCTGAAT+TGG 0.291343 1.1:+42187834 None:intergenic
CAGATTACTGATTTGTCTCT+TGG 0.294356 1.1:-42188071 MS.gene070601:CDS
GAACCAATGCACCAAAATTA+GGG 0.331625 1.1:-42188795 MS.gene070601:CDS
GATACTCGAAGAAGCGATTC+AGG 0.345165 1.1:-42187992 MS.gene070601:CDS
AGCTTGACTTCGATCAGGTT+TGG 0.359219 1.1:+42188577 None:intergenic
CATTCTCAGCAGCTTCAGTT+TGG 0.372538 1.1:-42188749 MS.gene070601:CDS
CTGGAGCTTCGATGACGTTC+AGG 0.377509 1.1:-42188545 MS.gene070601:intron
CAATGACCTGAATTGGGTTC+TGG 0.383650 1.1:+42187841 None:intergenic
TGGAACATATGTTGCATGTT+TGG 0.388336 1.1:+42188028 None:intergenic
AGATTACTGATTTGTCTCTT+GGG 0.391228 1.1:-42188070 MS.gene070601:CDS
GGATCTGAAACGACTGCAAC+AGG 0.391313 1.1:+42188598 None:intergenic
AACCGACCAGAACCCAATTC+AGG 0.402601 1.1:-42187847 MS.gene070601:CDS
GAAAGAAGCTTATGGCTGTT+AGG 0.402629 1.1:-42187905 MS.gene070601:CDS
CAAACTGAAGCTGCTGAGAA+TGG 0.431599 1.1:+42188750 None:intergenic
TTGTTGATGCTGTCGTCAAC+AGG 0.441734 1.1:-42187821 MS.gene070601:intron
GCCATCTATCTTCTAACTAC+TGG 0.451088 1.1:-42185941 MS.gene070601:CDS
GAACTTATTAATGCAGCAAA+AGG 0.453667 1.1:-42185863 MS.gene070601:CDS
GAACAATGGAAAGAAGCTTA+TGG 0.462961 1.1:-42187913 MS.gene070601:CDS
AATTGTCTTAATATTTCTAA+AGG 0.465228 1.1:+42185904 None:intergenic
CGTGAAGATGCTACTCGTAT+TGG 0.468388 1.1:-42186025 MS.gene070601:CDS
TGAAGAGCTTGACTTCGATC+AGG 0.472581 1.1:+42188572 None:intergenic
GTTGCTAAGGCAAATCGTTA+AGG 0.480990 1.1:-42185677 None:intergenic
CAGCAAAAGGATCATCCAAC+AGG 0.484289 1.1:-42185850 MS.gene070601:intron
TATGTGATAAACCCTAATTT+TGG 0.490722 1.1:+42188784 None:intergenic
GCTACTCGTATTGGTTCTGC+TGG 0.495376 1.1:-42186016 MS.gene070601:CDS
GATTACTGATTTGTCTCTTG+GGG 0.496398 1.1:-42188069 MS.gene070601:CDS
AAGTCAAGCTCTTCAACCGC+TGG 0.503610 1.1:-42188564 MS.gene070601:CDS
CATCAACAATGACCTGAATT+GGG 0.506610 1.1:+42187835 None:intergenic
ACCAGTAGTTAGAAGATAGA+TGG 0.507365 1.1:+42185940 None:intergenic
TTGTCTCTTGGGGATTACAT+TGG 0.513322 1.1:-42188059 MS.gene070601:CDS
TGAAATTGAAAGAGTTGCTA+AGG 0.514135 1.1:-42185690 MS.gene070601:CDS
GGCTTGATTCACACGACGAA+GGG 0.519901 1.1:+42185961 None:intergenic
TGCTGGAGTTGTAAGAAGAC+AGG 0.532743 1.1:-42185999 MS.gene070601:CDS
AACCGTGATTGAGGTGGATG+CGG 0.535990 1.1:+42188723 None:intergenic
ACATATGTTCCACACACTGC+TGG 0.537649 1.1:-42188017 MS.gene070601:CDS
TTAGTGAGCCTCTCAACAAT+GGG 0.543323 1.1:+42187957 None:intergenic
TAGGATCATCAAGCATGCTA+TGG 0.558540 1.1:-42187886 MS.gene070601:CDS
CTAACTCTCTCATGATGCAT+GGG 0.561374 1.1:-42187938 MS.gene070601:CDS
GTTAGTGAGCCTCTCAACAA+TGG 0.562680 1.1:+42187956 None:intergenic
ACTAACTCTCTCATGATGCA+TGG 0.563337 1.1:-42187939 MS.gene070601:CDS
ATGATGCATGGGAGGAACAA+TGG 0.566550 1.1:-42187927 MS.gene070601:CDS
AAATGAACGAACCGTGATTG+AGG 0.567407 1.1:+42188714 None:intergenic
AGTTGTAAGAAGACAGGCTG+TGG 0.574582 1.1:-42185993 MS.gene070601:CDS
TGCCGCATCCACCTCAATCA+CGG 0.580034 1.1:-42188725 MS.gene070601:intron
CTCAGTGTCCCATTGTTGAG+AGG 0.591866 1.1:-42187965 MS.gene070601:CDS
TTCTTCAATGACATCAGCCA+TGG 0.596830 1.1:+42188621 None:intergenic
GACCTGAATTGGGTTCTGGT+CGG 0.606242 1.1:+42187845 None:intergenic
GAAGCTGCTGAGAATGGAGA+AGG 0.631702 1.1:+42188756 None:intergenic
GAGTATCTACCAGCAGTGTG+TGG 0.639793 1.1:+42188008 None:intergenic
TGAACGAACCGTGATTGAGG+TGG 0.645612 1.1:+42188717 None:intergenic
ACTCTCTCATGATGCATGGG+AGG 0.648954 1.1:-42187935 MS.gene070601:CDS
GAACGTCATCGAAGCTCCAG+CGG 0.655762 1.1:+42188548 None:intergenic
TGCTGAGAATGGAGAAGGTG+TGG 0.656611 1.1:+42188761 None:intergenic
TGGCTTGATTCACACGACGA+AGG 0.656812 1.1:+42185960 None:intergenic
GCTTGATTCACACGACGAAG+GGG 0.665666 1.1:+42185962 None:intergenic
ATACGAGTAGCATCTTCACG+AGG 0.785565 1.1:+42186028 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAATTCTATTTATTA+AGG + chr1.1:42188155-42188174 None:intergenic 10.0%
!! AATTTAAACAAAAAATTAAC+TGG + chr1.1:42186888-42186907 None:intergenic 10.0%
!! TTAGAAATTAATAAGAAATA+TGG - chr1.1:42187589-42187608 MS.gene070601:intron 10.0%
!!! TTCTTTTTTTAAATTTTTTC+TGG - chr1.1:42187133-42187152 MS.gene070601:intron 10.0%
!! ATATTAAAAAAACAATAAGC+TGG + chr1.1:42187261-42187280 None:intergenic 15.0%
!! TAAATTCTAATTTGACATAT+TGG - chr1.1:42186902-42186921 MS.gene070601:intron 15.0%
!!! AATTGTCTTAATATTTCTAA+AGG + chr1.1:42188575-42188594 None:intergenic 15.0%
!!! TAATATTTCTATGTTTTTGA+TGG - chr1.1:42187039-42187058 MS.gene070601:intron 15.0%
!!! TTTTAATTAGTTTCATGTTT+AGG - chr1.1:42185983-42186002 MS.gene070601:CDS 15.0%
!! AAAAAATTAACTGGAATGTT+AGG + chr1.1:42186879-42186898 None:intergenic 20.0%
!! AAAAATGTAGTGATTAATGT+TGG - chr1.1:42186362-42186381 MS.gene070601:intron 20.0%
!! AAAAGGTAGTAGTATATTAA+TGG + chr1.1:42188374-42188393 None:intergenic 20.0%
!! AATTGAAAATAAAAATGAGC+TGG + chr1.1:42187889-42187908 None:intergenic 20.0%
!! ATTGAAAATAAAAATGAGCT+GGG + chr1.1:42187888-42187907 None:intergenic 20.0%
!! CAAGAGATGAAAAAAAATTA+TGG + chr1.1:42188692-42188711 None:intergenic 20.0%
!! GTATTTGAAAGGAAAAAAAT+TGG + chr1.1:42187733-42187752 None:intergenic 20.0%
!! GTTATCATAAATAAACACTT+TGG - chr1.1:42187013-42187032 MS.gene070601:intron 20.0%
!! TCATAAGTCAAAGAATTAAA+AGG + chr1.1:42188724-42188743 None:intergenic 20.0%
!!! AAATTTTTTCTGGTTTGATA+TGG - chr1.1:42187143-42187162 MS.gene070601:intron 20.0%
!!! ATGAATAATTTGTTTCCTAT+TGG - chr1.1:42187807-42187826 MS.gene070601:intron 20.0%
!!! ATGAATATTTGTTTTCCTAT+TGG - chr1.1:42187473-42187492 MS.gene070601:intron 20.0%
!!! TTTGTTGAAATTTTTGTAGT+TGG - chr1.1:42186072-42186091 MS.gene070601:intron 20.0%
!!! TTTTATTTTCTGGTTTGATA+TGG - chr1.1:42186771-42186790 MS.gene070601:intron 20.0%
!!! TTTTGTTATTCCAGATTATT+TGG - chr1.1:42186199-42186218 MS.gene070601:intron 20.0%
! AAAAAAAGAACAACCTAATC+AGG + chr1.1:42187123-42187142 None:intergenic 25.0%
! ATCAGATCCAAATTCAAAAA+AGG + chr1.1:42188391-42188410 None:intergenic 25.0%
! ATGAATATTTGTTTCCCTAT+TGG - chr1.1:42187177-42187196 MS.gene070601:intron 25.0%
! ATTTGTGTATTACTTGTGAT+TGG - chr1.1:42188213-42188232 MS.gene070601:intron 25.0%
! CATTACTAACGAAACATAAA+GGG + chr1.1:42186944-42186963 None:intergenic 25.0%
! CTTTACTAATGAAACATATG+AGG + chr1.1:42187329-42187348 None:intergenic 25.0%
! TAAAACAAATTGCATCATTC+TGG + chr1.1:42187211-42187230 None:intergenic 25.0%
! TAATTATTGTGATCCTGATT+AGG - chr1.1:42187107-42187126 MS.gene070601:intron 25.0%
! TCATTACTAACGAAACATAA+AGG + chr1.1:42186945-42186964 None:intergenic 25.0%
! TCTCTTATAAGTAACACAAA+AGG + chr1.1:42187640-42187659 None:intergenic 25.0%
! TTCATGAGTTATGATTATCT+TGG - chr1.1:42187979-42187998 MS.gene070601:CDS 25.0%
! TTCATTAGTAAAGACTGTTA+AGG - chr1.1:42187336-42187355 MS.gene070601:intron 25.0%
!! TATGTGATAAACCCTAATTT+TGG + chr1.1:42185695-42185714 None:intergenic 25.0%
!!! ACTACTACCTTTTTTGAATT+TGG - chr1.1:42188381-42188400 MS.gene070601:intron 25.0%
!!! ATGAATTTTTGTTTCCCTAT+TGG - chr1.1:42186805-42186824 MS.gene070601:intron 25.0%
AATACAAATTGCCATCATTC+TGG + chr1.1:42187507-42187526 None:intergenic 30.0%
AATGGCATATTTAAGCAACA+AGG + chr1.1:42188245-42188264 None:intergenic 30.0%
ACAAGAAACACCAAATAATC+TGG + chr1.1:42186212-42186231 None:intergenic 30.0%
ATATTAACCCTTTAGACGAT+GGG + chr1.1:42188293-42188312 None:intergenic 30.0%
ATGATTCACACGTATTTGAA+AGG + chr1.1:42187744-42187763 None:intergenic 30.0%
GAAACTGCGATAATAAGAAT+CGG - chr1.1:42188044-42188063 MS.gene070601:CDS 30.0%
GAACTTATTAATGCAGCAAA+AGG - chr1.1:42188613-42188632 MS.gene070601:CDS 30.0%
GTTAATATGGACTTGCAATT+AGG - chr1.1:42188305-42188324 MS.gene070601:intron 30.0%
TAGTGTTATGATTTACTTGC+TGG - chr1.1:42187763-42187782 MS.gene070601:intron 30.0%
TGAAATTGAAAGAGTTGCTA+AGG - chr1.1:42188786-42188805 MS.gene070601:CDS 30.0%
TTATTTACCCATCGTCTAAA+GGG - chr1.1:42188283-42188302 MS.gene070601:intron 30.0%
TTCGTTAGTAATGATTGTTG+AGG - chr1.1:42186951-42186970 MS.gene070601:intron 30.0%
! ATGATTGGTTATTTCCCTAT+TGG - chr1.1:42188078-42188097 MS.gene070601:intron 30.0%
! ATTTGAAAAAGCATACCTGT+TGG + chr1.1:42188644-42188663 None:intergenic 30.0%
! TATGAATCGTTGATTGTTGA+TGG - chr1.1:42186678-42186697 MS.gene070601:intron 30.0%
!! AGATTACTGATTTGTCTCTT+GGG - chr1.1:42186406-42186425 MS.gene070601:intron 30.0%
!!! TATTTTCTGGTTTGATATGG+AGG - chr1.1:42186774-42186793 MS.gene070601:intron 30.0%
AAAAAATGGCCTAGAATGTC+AGG + chr1.1:42187549-42187568 None:intergenic 35.0%
AAACGAACAATGAGAAACAG+TGG + chr1.1:42185825-42185844 None:intergenic 35.0%
AAGCTGGAATGATATGAGAA+TGG + chr1.1:42187245-42187264 None:intergenic 35.0%
AATGAGCTGGGAAATAAGAA+TGG + chr1.1:42187876-42187895 None:intergenic 35.0%
ACCAGTAGTTAGAAGATAGA+TGG + chr1.1:42188539-42188558 None:intergenic 35.0%
AGAAACAGTGGATACAGAAA+AGG + chr1.1:42185813-42185832 None:intergenic 35.0%
ATACATAAGTGCCATCATCA+AGG + chr1.1:42188112-42188131 None:intergenic 35.0%
ATCAAGGCAATCAAACCAAT+AGG + chr1.1:42188096-42188115 None:intergenic 35.0%
ATGCCATTGTTTACTTTCTG+TGG - chr1.1:42188257-42188276 MS.gene070601:intron 35.0%
CAACCACAGAAAGTAAACAA+TGG + chr1.1:42188263-42188282 None:intergenic 35.0%
CAAGTAATACACAAATGACG+AGG + chr1.1:42188209-42188228 None:intergenic 35.0%
CATATTAACCCTTTAGACGA+TGG + chr1.1:42188294-42188313 None:intergenic 35.0%
CATCAACAATGACCTGAATT+GGG + chr1.1:42186644-42186663 None:intergenic 35.0%
CATCGTCTAAAGGGTTAATA+TGG - chr1.1:42188292-42188311 MS.gene070601:intron 35.0%
GAACAATGGAAAGAAGCTTA+TGG - chr1.1:42186563-42186582 MS.gene070601:intron 35.0%
GAACCAATGCACCAAAATTA+GGG - chr1.1:42185681-42185700 MS.gene070601:CDS 35.0%
GTTATTTACCCATCGTCTAA+AGG - chr1.1:42188282-42188301 MS.gene070601:intron 35.0%
TAACTGGAATGTTAGGAGAA+TGG + chr1.1:42186872-42186891 None:intergenic 35.0%
TCAAGGCAATCAAACCAATA+GGG + chr1.1:42188095-42188114 None:intergenic 35.0%
TGAACCAATGCACCAAAATT+AGG - chr1.1:42185680-42185699 MS.gene070601:CDS 35.0%
TGGAACATATGTTGCATGTT+TGG + chr1.1:42186451-42186470 None:intergenic 35.0%
TGTTTGTGTATTTGTCGTGA+TGG - chr1.1:42187429-42187448 MS.gene070601:intron 35.0%
!! AAACCCTAATTTTGGTGCAT+TGG + chr1.1:42185687-42185706 None:intergenic 35.0%
!! CAGATTACTGATTTGTCTCT+TGG - chr1.1:42186405-42186424 MS.gene070601:intron 35.0%
!! GATTACTGATTTGTCTCTTG+GGG - chr1.1:42186407-42186426 MS.gene070601:intron 35.0%
!! TCTATGTTTTTGATGGCTGT+AGG - chr1.1:42187046-42187065 MS.gene070601:intron 35.0%
!! TTCTGGTTTGATATGGTGAA+TGG - chr1.1:42187150-42187169 MS.gene070601:intron 35.0%
AAATGAACGAACCGTGATTG+AGG + chr1.1:42185765-42185784 None:intergenic 40.0%
AATACAAGCTGCCATCATTC+TGG + chr1.1:42187841-42187860 None:intergenic 40.0%
ACTAACTCTCTCATGATGCA+TGG - chr1.1:42186537-42186556 MS.gene070601:intron 40.0%
ACTCTTGCAGTCAAACCAAT+AGG + chr1.1:42186823-42186842 None:intergenic 40.0%
ATTCTGGCAGTCAAACCAAT+AGG + chr1.1:42187195-42187214 None:intergenic 40.0%
CATACACAAGACAGATCTCA+CGG + chr1.1:42187087-42187106 None:intergenic 40.0%
CGAAGATTCGAAGAATGTGA+AGG + chr1.1:42185788-42185807 None:intergenic 40.0%
CTAACTCTCTCATGATGCAT+GGG - chr1.1:42186538-42186557 MS.gene070601:intron 40.0%
CTCTTGCAGTCAAACCAATA+GGG + chr1.1:42186822-42186841 None:intergenic 40.0%
GAAAGAAGCTTATGGCTGTT+AGG - chr1.1:42186571-42186590 MS.gene070601:intron 40.0%
GCATCAACAATGACCTGAAT+TGG + chr1.1:42186645-42186664 None:intergenic 40.0%
GCCATCTATCTTCTAACTAC+TGG - chr1.1:42188535-42188554 MS.gene070601:intron 40.0%
TAGGATCATCAAGCATGCTA+TGG - chr1.1:42186590-42186609 MS.gene070601:intron 40.0%
TCGGAGAATGACATGATGAT+TGG - chr1.1:42188063-42188082 MS.gene070601:CDS 40.0%
TGATGGCTTAGAATGGAGAA+TGG - chr1.1:42187446-42187465 MS.gene070601:intron 40.0%
TGGTTTGATTGCCTTGATGA+TGG - chr1.1:42188098-42188117 MS.gene070601:intron 40.0%
TTAGTGAGCCTCTCAACAAT+GGG + chr1.1:42186522-42186541 None:intergenic 40.0%
TTCTGGCAGTCAAACCAATA+GGG + chr1.1:42187194-42187213 None:intergenic 40.0%
TTCTTCAATGACATCAGCCA+TGG + chr1.1:42185858-42185877 None:intergenic 40.0%
TTGTCTCTTGGGGATTACAT+TGG - chr1.1:42186417-42186436 MS.gene070601:intron 40.0%
TTTGTCGTGATGGCTTAGAA+TGG - chr1.1:42187439-42187458 MS.gene070601:intron 40.0%
!! TACTTGCTGGCTTGATTTGA+AGG - chr1.1:42187776-42187795 MS.gene070601:intron 40.0%
!! TTCTGGTTTGATATGGAGGA+TGG - chr1.1:42186778-42186797 MS.gene070601:intron 40.0%
ACATATGTTCCACACACTGC+TGG - chr1.1:42186459-42186478 MS.gene070601:intron 45.0%
AGCTTGACTTCGATCAGGTT+TGG + chr1.1:42185902-42185921 None:intergenic 45.0%
AGTTGTAAGAAGACAGGCTG+TGG - chr1.1:42188483-42188502 MS.gene070601:intron 45.0%
ATACGAGTAGCATCTTCACG+AGG + chr1.1:42188451-42188470 None:intergenic 45.0%
ATGATGCATGGGAGGAACAA+TGG - chr1.1:42186549-42186568 MS.gene070601:intron 45.0%
ATTCTGGCGGTCAAACCAAT+AGG + chr1.1:42187825-42187844 None:intergenic 45.0%
CAAACTGAAGCTGCTGAGAA+TGG + chr1.1:42185729-42185748 None:intergenic 45.0%
CAATGACCTGAATTGGGTTC+TGG + chr1.1:42186638-42186657 None:intergenic 45.0%
CACTTGTGTCCTTTGTACAG+TGG - chr1.1:42188424-42188443 MS.gene070601:intron 45.0%
CAGCAAAAGGATCATCCAAC+AGG - chr1.1:42188626-42188645 MS.gene070601:intron 45.0%
CATTCTCAGCAGCTTCAGTT+TGG - chr1.1:42185727-42185746 MS.gene070601:intron 45.0%
CGTGAAGATGCTACTCGTAT+TGG - chr1.1:42188451-42188470 MS.gene070601:intron 45.0%
GACCATTCTCCTGACATTCT+AGG - chr1.1:42187537-42187556 MS.gene070601:intron 45.0%
GATACTCGAAGAAGCGATTC+AGG - chr1.1:42186484-42186503 MS.gene070601:intron 45.0%
GTTAGTGAGCCTCTCAACAA+TGG + chr1.1:42186523-42186542 None:intergenic 45.0%
TGAAGAGCTTGACTTCGATC+AGG + chr1.1:42185907-42185926 None:intergenic 45.0%
TGCTGGAGTTGTAAGAAGAC+AGG - chr1.1:42188477-42188496 MS.gene070601:intron 45.0%
TGGTTTGACTGCCAGAATGA+TGG - chr1.1:42187197-42187216 MS.gene070601:intron 45.0%
TTCGTTTCTCTATGCAGCCA+TGG - chr1.1:42185838-42185857 MS.gene070601:intron 45.0%
TTGTTGATGCTGTCGTCAAC+AGG - chr1.1:42186655-42186674 MS.gene070601:intron 45.0%
!! TGCTGGCTTGATTTGAAGGA+TGG - chr1.1:42187780-42187799 MS.gene070601:intron 45.0%
!! AAAAAATTATTTCAATTAAT+TGG - chr1.1:42186314-42186333 MS.gene070601:intron 5.0%
!!! TTTTATTAGATATAAAAAAA+TGG + chr1.1:42187563-42187582 None:intergenic 5.0%
!!! TTTTATTTTATTTTATTTTC+TGG - chr1.1:42186761-42186780 MS.gene070601:intron 5.0%
AACCGACCAGAACCCAATTC+AGG - chr1.1:42186629-42186648 MS.gene070601:intron 50.0%
AACCGTGATTGAGGTGGATG+CGG + chr1.1:42185756-42185775 None:intergenic 50.0%
AAGTCAAGCTCTTCAACCGC+TGG - chr1.1:42185912-42185931 MS.gene070601:CDS 50.0%
ACAAGCTGCCATCATTCTGG+CGG + chr1.1:42187838-42187857 None:intergenic 50.0%
ACTCTCTCATGATGCATGGG+AGG - chr1.1:42186541-42186560 MS.gene070601:intron 50.0%
CTCAGTGTCCCATTGTTGAG+AGG - chr1.1:42186511-42186530 MS.gene070601:intron 50.0%
GAAGCTGCTGAGAATGGAGA+AGG + chr1.1:42185723-42185742 None:intergenic 50.0%
GAGTATCTACCAGCAGTGTG+TGG + chr1.1:42186471-42186490 None:intergenic 50.0%
GCTTGATTCACACGACGAAG+GGG + chr1.1:42188517-42188536 None:intergenic 50.0%
GGCCTAGAATGTCAGGAGAA+TGG + chr1.1:42187542-42187561 None:intergenic 50.0%
GGCTTGATTCACACGACGAA+GGG + chr1.1:42188518-42188537 None:intergenic 50.0%
TCACGAGGACCACTGTACAA+AGG + chr1.1:42188436-42188455 None:intergenic 50.0%
TGAACGAACCGTGATTGAGG+TGG + chr1.1:42185762-42185781 None:intergenic 50.0%
TGCTGAGAATGGAGAAGGTG+TGG + chr1.1:42185718-42185737 None:intergenic 50.0%
TGGCTTGATTCACACGACGA+AGG + chr1.1:42188519-42188538 None:intergenic 50.0%
TGGTTTGACCGCCAGAATGA+TGG - chr1.1:42187827-42187846 MS.gene070601:CDS 50.0%
! GACCTGAATTGGGTTCTGGT+CGG + chr1.1:42186634-42186653 None:intergenic 50.0%
! GGATCTGAAACGACTGCAAC+AGG + chr1.1:42185881-42185900 None:intergenic 50.0%
!! GCTACTCGTATTGGTTCTGC+TGG - chr1.1:42188460-42188479 MS.gene070601:intron 50.0%
CTGGAGCTTCGATGACGTTC+AGG - chr1.1:42185931-42185950 MS.gene070601:CDS 55.0%
GAACGTCATCGAAGCTCCAG+CGG + chr1.1:42185931-42185950 None:intergenic 55.0%
TGCCGCATCCACCTCAATCA+CGG - chr1.1:42185751-42185770 MS.gene070601:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 42185679 42188819 42185679 ID=MS.gene070601
chr1.1 mRNA 42185679 42188819 42185679 ID=MS.gene070601.t1;Parent=MS.gene070601
chr1.1 exon 42188726 42188819 42188726 ID=MS.gene070601.t1.exon1;Parent=MS.gene070601.t1
chr1.1 CDS 42188726 42188819 42188726 ID=cds.MS.gene070601.t1;Parent=MS.gene070601.t1
chr1.1 exon 42188546 42188643 42188546 ID=MS.gene070601.t1.exon2;Parent=MS.gene070601.t1
chr1.1 CDS 42188546 42188643 42188546 ID=cds.MS.gene070601.t1;Parent=MS.gene070601.t1
chr1.1 exon 42187822 42188090 42187822 ID=MS.gene070601.t1.exon3;Parent=MS.gene070601.t1
chr1.1 CDS 42187822 42188090 42187822 ID=cds.MS.gene070601.t1;Parent=MS.gene070601.t1
chr1.1 exon 42185851 42186054 42185851 ID=MS.gene070601.t1.exon4;Parent=MS.gene070601.t1
chr1.1 CDS 42185851 42186054 42185851 ID=cds.MS.gene070601.t1;Parent=MS.gene070601.t1
chr1.1 exon 42185679 42185733 42185679 ID=MS.gene070601.t1.exon5;Parent=MS.gene070601.t1
chr1.1 CDS 42185679 42185733 42185679 ID=cds.MS.gene070601.t1;Parent=MS.gene070601.t1
Gene Sequence

>MS.gene070601

ATGAACCAATGCACCAAAATTAGGGTTTATCACATACCACACCTTCTCCATTCTCAGCAGCTTCAGTTTGGTTGCCGCATCCACCTCAATCACGGTTCGTTCATTTCCTTCACATTCTTCGAATCTTCGTTCCTTTTCTGTATCCACTGTTTCTCATTGTTCGTTTCTCTATGCAGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGGTAATTTTTTCACATTTCTTCAGATTTAGTTTTTAATTAGTTTCATGTTTAGGTTAATTCTTAATTAATTCTTAATTACTCTGTCTGAAATGTTGTAAAAATTTATGATTTTTTTGTTGTTTGTTGAAATTTTTGTAGTTGGTGTTTTAGTTTTCTGATGTATCAACTGAATTTATTTTTTATTTCAATTAATTGAATTTTTATTGTGTTTTAGTAATTTAAAAATGTTGTGATTAGTTTTGCAATTTTTGTTATTCCAGATTATTTGGTGTTTCTTGTTTTAGTTTTCTGATAGCTAATGAAAAGCAATGAATTTTCTCTAAAAAATATGTTTTAGTTTTCTGATGTATTATGCTGCAAAAAAAAATTATTTCAATTAATTGGTTTTTTTATTGTGTTTTAGTGATAAAAAAATGTAGTGATTAATGTTGGAATTTTGATTTTGATTATATCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAACATGCAACATATGTTCCACACACTGCTGGTAGATACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTAACCGACCAGAACCCAATTCAGGTCATTGTTGATGCTGTCGTCAACAGGTATGAATCGTTGATTGTTGATGGCTGTAGAAATTTGAGTTTGATATTGTAAAATTGTTGATGTTTTTCAATTATTGAAACAATTTTTATTTTATTTTATTTTCTGGTTTGATATGGAGGATGGAGTGATGAATTTTTGTTTCCCTATTGGTTTGACTGCAAGAGTGATGCAATTTTATTAGAACTATCTGACCATTCTCCTAACATTCCAGTTAATTTTTTGTTTAAATTCTAATTTGACATATTGGAACGTATGAAGATAAACCCTTTATGTTTCGTTAGTAATGATTGTTGAGGACATTGTAAAGAAACACTTTGAGTAAATTATGTGTGCAAGTTATCATAAATAAACACTTTGGAAATAATATTTCTATGTTTTTGATGGCTGTAGGAAATTTGAGTTGATACCGTGAGATCTGTCTTGTGTATGTAATTATTGTGATCCTGATTAGGTTGTTCTTTTTTTAAATTTTTTCTGGTTTGATATGGTGAATGGAATGATGAATATTTGTTTCCCTATTGGTTTGACTGCCAGAATGATGCAATTTGTTTTAAAACTATCTGACCATTCTCATATCATTCCAGCTTATTGTTTTTTTAATATCTAATTAGATTAGATATGTTTTTTATTATTTTTGATGAAGATATGCCTCATATGTTTCATTAGTAAAGACTGTTAAGGAGATTGAAAAGAAGCTGTTACTGAAATAAACATTTGAATTATTACTTGTAAATGATTTGAATTTGAATGATGTTTGTGTATTTGTCGTGATGGCTTAGAATGGAGAATGGAGTGATGAATATTTGTTTTCCTATTGGTTTGACTGCCAGAATGATGGCAATTTGTATTAGCTCTATCTGACCATTCTCCTGACATTCTAGGCCATTTTTTTATATCTAATAAAAAATTAATTAGAAATTAATAAGAAATATGGTTCTGTTTCAGCATGAAAACAACTTCCTTTTGTGTTACTTATAAGAGACAACACTATAAAAGATATTTATAAGAAATACTCAAGTAATTAAAGTTAAAGTTGTTGTAAACAAACTTTGCCAATTTTTTTCCTTTCAAATACGTGTGAATCATAGTGTTATGATTTACTTGCTGGCTTGATTTGAAGGATGGAATGATGAATAATTTGTTTCCTATTGGTTTGACCGCCAGAATGATGGCAGCTTGTATTAGCTCTATCTGACCATTCTTATTTCCCAGCTCATTTTTATTTTCAATTTATTACAAACTAATCACTTTGCAGAAGAAATGATATTGTTAGATAATCACAGCTTTTTGATATCTTACATTTCATGAGTTATGATTATCTTGGCTGTTTTGTTCGATTTTAAATCTACTTTCGTTTTTAAGCATAGAAACTGCGATAATAAGAATCGGAGAATGACATGATGATTGGTTATTTCCCTATTGGTTTGATTGCCTTGATGATGGCACTTATGTATTAGCTCTATCTGATCATTCTCCTTAATAAATAGAATTTTGATTGTTTTTATCTGTTTAATTGATTGATGAATTTCCTCGTCATTTGTGTATTACTTGTGATTGGTTGTTGCCTTGTTGCTTAAATATGCCATTGTTTACTTTCTGTGGTTGTTATTTACCCATCGTCTAAAGGGTTAATATGGACTTGCAATTAGGATGTGTGTTTTGTCAAGATTGCAATTTATGCTGTTTTCATGTTCCATTAATATACTACTACCTTTTTTGAATTTGGATCTGATTTATTTGTGTATGCACTTGTGTCCTTTGTACAGTGGTCCTCGTGAAGATGCTACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCACGTGAAGCTGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGGTATGCTTTTTCAAATTTTATCTGTGTACACATGCAGTCTTCCATAATTTTTTTTCATCTCTTGTGTTTTAGTCCTTTTAATTCTTTGACTTATGATAAATACATTATCTCTTTCAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA
Protein sequence

>MS.gene070601.t1

MNQCTKIRVYHIPHLLHSQQLQFGCRIHLNHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR