Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23038.t1 | XP_013450311.1 | 98.1 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.60E-105 | 392.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23038.t1 | O65731 | 93.3 | 195 | 13 | 0 | 13 | 207 | 3 | 197 | 3.3e-96 | 352.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23038.t1 | I3SKT5 | 98.1 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.1e-105 | 392.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23038 | MS.gene034626 | PPI |
| MS.gene25236 | MS.gene23038 | PPI |
| MS.gene23038 | MS.gene070600 | PPI |
| MS.gene070601 | MS.gene23038 | PPI |
| MS.gene46489 | MS.gene23038 | PPI |
| MS.gene25639 | MS.gene23038 | PPI |
| MS.gene070600 | MS.gene23038 | PPI |
| MS.gene23038 | MS.gene39207 | PPI |
| MS.gene23038 | MS.gene007033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23038.t1 | MTR_7g107380 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.67e-150 | 416 |
| MS.gene23038.t1 | MTR_1g054310 | 94.737 | 209 | 7 | 3 | 1 | 207 | 33 | 239 | 8.99e-141 | 392 |
| MS.gene23038.t1 | MTR_0515s0010 | 90.789 | 76 | 7 | 0 | 46 | 121 | 5 | 80 | 5.87e-47 | 149 |
| MS.gene23038.t1 | MTR_0306s0010 | 90.789 | 76 | 7 | 0 | 46 | 121 | 5 | 80 | 5.87e-47 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23038.t1 | AT2G37270 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.04e-132 | 369 |
| MS.gene23038.t1 | AT2G37270 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.04e-132 | 369 |
| MS.gene23038.t1 | AT3G11940 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.30e-130 | 365 |
| MS.gene23038.t1 | AT3G11940 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.30e-130 | 365 |
| MS.gene23038.t1 | ATCG01240 | 34.532 | 139 | 78 | 5 | 71 | 207 | 22 | 149 | 9.93e-11 | 58.2 |
| MS.gene23038.t1 | ATCG00900 | 34.532 | 139 | 78 | 5 | 71 | 207 | 22 | 149 | 9.93e-11 | 58.2 |
Find 60 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTATGCGATCAAGAAAA+AGG | 0.316264 | 7.2:+7070310 | MS.gene23038:intron |
| TCCTCTTCGTCGGGTTAATC+AGG | 0.327028 | 7.2:+7070074 | MS.gene23038:CDS |
| GAGCTTGACTTCGTTTAGAT+TGG | 0.348914 | 7.2:-7067078 | None:intergenic |
| CGATAACTTGAATCGGGTTC+TGG | 0.350343 | 7.2:-7067761 | None:intergenic |
| ACCAGTTGTTAGAAGATATA+TGG | 0.352278 | 7.2:-7070097 | None:intergenic |
| AGAGAAGATGCAACCAGAAT+TGG | 0.353281 | 7.2:+7070012 | MS.gene23038:CDS |
| ATGGAGCTTCGACGACGTTC+AGG | 0.358685 | 7.2:+7067109 | MS.gene23038:CDS |
| GTGCCCGTGAAGCTGCATTT+AGG | 0.361118 | 7.2:+7070118 | MS.gene23038:CDS |
| TTGGATCTGCTGGAGTTGTT+AGG | 0.369348 | 7.2:+7070031 | MS.gene23038:CDS |
| AGGAACATATGTTGCATGTT+TGG | 0.372138 | 7.2:-7067574 | None:intergenic |
| GCCATATATCTTCTAACAAC+TGG | 0.404354 | 7.2:+7070096 | MS.gene23038:CDS |
| GGTACTCAAAGAAGCGCTTC+AGG | 0.411900 | 7.2:+7067610 | MS.gene23038:CDS |
| AGCTTGACTTCGTTTAGATT+GGG | 0.412691 | 7.2:-7067077 | None:intergenic |
| GAAAGAAACTCATGGCTGTT+AGG | 0.417495 | 7.2:+7067697 | MS.gene23038:CDS |
| CAGATTACCGATCTGTCTCT+TGG | 0.434208 | 7.2:+7067528 | MS.gene23038:intron |
| AGATTACCGATCTGTCTCTT+GGG | 0.440013 | 7.2:+7067529 | MS.gene23038:intron |
| TCGTTGATGCTGTCGTCAAC+AGG | 0.441734 | 7.2:+7067781 | MS.gene23038:CDS |
| GCAACCAGAATTGGATCTGC+TGG | 0.442717 | 7.2:+7070021 | MS.gene23038:CDS |
| TGGATATCTCTCCTCTTCGT+CGG | 0.449849 | 7.2:+7070064 | MS.gene23038:CDS |
| GCATCAACGATAACTTGAAT+CGG | 0.455711 | 7.2:-7067768 | None:intergenic |
| TGCTGGAGTTGTTAGGAGGC+AGG | 0.469034 | 7.2:+7070038 | MS.gene23038:CDS |
| TGATGCTTAACGATTGGCCT+TGG | 0.471931 | 7.2:-7070351 | None:intergenic |
| AGATTGGGATCAACTTCGAC+TGG | 0.475242 | 7.2:-7067062 | None:intergenic |
| CTGCCAAGGGTTCATCCAAC+AGG | 0.475684 | 7.2:+7070187 | MS.gene23038:CDS |
| ATTCTGGTTGCATCTTCTCT+AGG | 0.476377 | 7.2:-7070009 | None:intergenic |
| TGTTCCTAAATGCAGCTTCA+CGG | 0.488373 | 7.2:-7070122 | None:intergenic |
| TAAGACAATTGCTGAATGCT+TGG | 0.490857 | 7.2:+7070146 | MS.gene23038:CDS |
| CTGTCTCTTGGGGATTACAT+TGG | 0.493111 | 7.2:+7067540 | MS.gene23038:CDS |
| AACTCCAGCAGATCCAATTC+TGG | 0.495047 | 7.2:-7070025 | None:intergenic |
| TCCAAATGATGCTTAACGAT+TGG | 0.503018 | 7.2:-7070357 | None:intergenic |
| GGATATCTCTCCTCTTCGTC+GGG | 0.512011 | 7.2:+7070065 | MS.gene23038:CDS |
| GTTCCTAAATGCAGCTTCAC+GGG | 0.512374 | 7.2:-7070121 | None:intergenic |
| AGTTGTTAGGAGGCAGGCTG+TGG | 0.516790 | 7.2:+7070044 | MS.gene23038:CDS |
| ACATATGTTCCTCACACTGC+TGG | 0.521105 | 7.2:+7067585 | MS.gene23038:CDS |
| GGGGATTACATTGGAGCAAG+AGG | 0.537561 | 7.2:+7067549 | MS.gene23038:CDS |
| GAACGTCGTCGAAGCTCCAT+TGG | 0.540472 | 7.2:-7067106 | None:intergenic |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 7.2:-7067645 | None:intergenic |
| TGAGATTGAGAGAGTTGCCA+AGG | 0.553654 | 7.2:+7070334 | MS.gene23038:CDS |
| ATACCTGTTGGATGAACCCT+TGG | 0.559348 | 7.2:-7070190 | None:intergenic |
| GATCTGCTGGAGTTGTTAGG+AGG | 0.561323 | 7.2:+7070034 | MS.gene23038:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 7.2:-7067646 | None:intergenic |
| CATCAACGATAACTTGAATC+GGG | 0.564821 | 7.2:-7067767 | None:intergenic |
| TGAACTCATTAACGCTGCCA+AGG | 0.567714 | 7.2:+7070173 | MS.gene23038:CDS |
| AAGTCAAGCTCTTCAACCAA+TGG | 0.580728 | 7.2:+7067090 | MS.gene23038:CDS |
| GGCAGCGTTAATGAGTTCAT+CGG | 0.587813 | 7.2:-7070169 | None:intergenic |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 7.2:+7067637 | MS.gene23038:CDS |
| GATTGGGATCAACTTCGACT+GGG | 0.607523 | 7.2:-7067061 | None:intergenic |
| GATTACCGATCTGTCTCTTG+GGG | 0.611070 | 7.2:+7067530 | MS.gene23038:intron |
| GTAATCCCCAAGAGACAGAT+CGG | 0.613626 | 7.2:-7067535 | None:intergenic |
| GAACTCATTAACGCTGCCAA+GGG | 0.617992 | 7.2:+7070174 | MS.gene23038:CDS |
| TAGGATCATTAAGCATGCCA+TGG | 0.620948 | 7.2:+7067716 | MS.gene23038:CDS |
| GCCTGATTAACCCGACGAAG+AGG | 0.622409 | 7.2:-7070075 | None:intergenic |
| AGCGACGGTTTCATCAGCCA+TGG | 0.634868 | 7.2:-7067036 | None:intergenic |
| TAGCAAGTGAATGATCTCCA+TGG | 0.641966 | 7.2:-7067733 | None:intergenic |
| ATGTTCCTCACACTGCTGGT+AGG | 0.649707 | 7.2:+7067589 | MS.gene23038:CDS |
| AAACAACGGAAAGAAACTCA+TGG | 0.660227 | 7.2:+7067689 | MS.gene23038:CDS |
| ATGATGCACGGTAGAAACAA+CGG | 0.667166 | 7.2:+7067675 | MS.gene23038:CDS |
| ACTAACTCTCTCATGATGCA+CGG | 0.667607 | 7.2:+7067663 | MS.gene23038:CDS |
| AACTTCGACTGGGATAGCGA+CGG | 0.675722 | 7.2:-7067051 | None:intergenic |
| GAGTACCTACCAGCAGTGTG+AGG | 0.691601 | 7.2:-7067594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTGAATTATTATTAAT+TGG | + | chr7.2:7068576-7068595 | MS.gene23038:intron | 10.0% |
| !!! | AATACTTTTTTGAATATTTA+AGG | + | chr7.2:7069624-7069643 | MS.gene23038:intron | 10.0% |
| !!! | AATTATATTATTTTATGTAG+TGG | + | chr7.2:7069985-7070004 | MS.gene23038:intron | 10.0% |
| !!! | ATACTTTTTTGAATATTTAA+GGG | + | chr7.2:7069625-7069644 | MS.gene23038:intron | 10.0% |
| !!! | TTTCAATAAATATTTTATCT+TGG | + | chr7.2:7069081-7069100 | MS.gene23038:intron | 10.0% |
| !! | AATTGTAATTACTAATTACA+TGG | + | chr7.2:7068103-7068122 | MS.gene23038:intron | 15.0% |
| !! | TAAAATTAAAAAACCCATTA+AGG | - | chr7.2:7067435-7067454 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAGATTGAATAA+TGG | - | chr7.2:7070220-7070239 | None:intergenic | 15.0% |
| !!! | ATAAATCAACTTGAATATTT+TGG | + | chr7.2:7068164-7068183 | MS.gene23038:intron | 15.0% |
| !!! | GCTATTTTCATAATTTATAT+TGG | + | chr7.2:7067298-7067317 | MS.gene23038:intron | 15.0% |
| !!! | GTTTTTAAATTGTTAAAACT+GGG | + | chr7.2:7068611-7068630 | MS.gene23038:intron | 15.0% |
| !!! | TGTTTTTAAATTGTTAAAAC+TGG | + | chr7.2:7068610-7068629 | MS.gene23038:intron | 15.0% |
| !! | AAATAAAGTGACAAATGATA+AGG | - | chr7.2:7068071-7068090 | None:intergenic | 20.0% |
| !! | AAATATCCTAAAACTAAAAC+TGG | - | chr7.2:7069951-7069970 | None:intergenic | 20.0% |
| !! | AATAATATGAAACAGATCAA+TGG | - | chr7.2:7067915-7067934 | None:intergenic | 20.0% |
| !! | AGTCAATATATATCAATCAT+AGG | - | chr7.2:7067838-7067857 | None:intergenic | 20.0% |
| !! | ATGATTTATTATTTCCCTAT+TGG | + | chr7.2:7069248-7069267 | MS.gene23038:intron | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | - | chr7.2:7069045-7069064 | None:intergenic | 20.0% |
| !! | GTATAAGTGATCAAATATAT+AGG | + | chr7.2:7068753-7068772 | MS.gene23038:intron | 20.0% |
| !! | GTCAATATATATCAATCATA+GGG | - | chr7.2:7067837-7067856 | None:intergenic | 20.0% |
| !! | TCACTTATACATAACAAATA+AGG | - | chr7.2:7068743-7068762 | None:intergenic | 20.0% |
| !! | TGATTTATTATTTCCCTATT+GGG | + | chr7.2:7069249-7069268 | MS.gene23038:intron | 20.0% |
| !! | TGTCATATTGTAATCAAATT+TGG | + | chr7.2:7069050-7069069 | MS.gene23038:intron | 20.0% |
| !! | TTATATAACAATGAGTAAGT+AGG | - | chr7.2:7068290-7068309 | None:intergenic | 20.0% |
| !! | TTTATAGCATTATAACTACA+TGG | - | chr7.2:7068801-7068820 | None:intergenic | 20.0% |
| !! | TTTCATAATTTATATTGGAG+AGG | + | chr7.2:7067303-7067322 | MS.gene23038:intron | 20.0% |
| !!! | AAATTTGAAATCTTTTCTTG+TGG | + | chr7.2:7069460-7069479 | MS.gene23038:intron | 20.0% |
| !!! | ATGATTTATTATTTTCCCAT+TGG | + | chr7.2:7069541-7069560 | MS.gene23038:intron | 20.0% |
| !!! | ATGCTATAAATATTTTGTGA+TGG | + | chr7.2:7068811-7068830 | MS.gene23038:intron | 20.0% |
| !!! | ATTGTTTGTTTTTTTTCTTC+TGG | + | chr7.2:7069421-7069440 | MS.gene23038:intron | 20.0% |
| !!! | TATAACTGAAAAAACTTGTT+CGG | - | chr7.2:7068129-7068148 | None:intergenic | 20.0% |
| !!! | TATCATTTGTCACTTTATTT+TGG | + | chr7.2:7068071-7068090 | MS.gene23038:intron | 20.0% |
| !!! | TTGAAATTGAATTTTTGATG+CGG | + | chr7.2:7067934-7067953 | MS.gene23038:intron | 20.0% |
| ! | AAATGCATTATTACTGTTGA+GGG | - | chr7.2:7068469-7068488 | None:intergenic | 25.0% |
| ! | AATCTAAATAGGTCCTTAAT+GGG | + | chr7.2:7067419-7067438 | MS.gene23038:intron | 25.0% |
| ! | ACAAATTATGACATGTTTGT+TGG | - | chr7.2:7067354-7067373 | None:intergenic | 25.0% |
| ! | AGAAAACAAATTCAGTACAT+TGG | - | chr7.2:7070243-7070262 | None:intergenic | 25.0% |
| ! | AGTAATCAATTAATCATGCA+TGG | + | chr7.2:7069105-7069124 | MS.gene23038:intron | 25.0% |
| ! | CAAATTATGACATGTTTGTT+GGG | - | chr7.2:7067353-7067372 | None:intergenic | 25.0% |
| ! | GATGATTTATTGTTTCCTAT+TGG | + | chr7.2:7068666-7068685 | MS.gene23038:intron | 25.0% |
| ! | TAAATCATCATTTCATTCTC+CGG | - | chr7.2:7068655-7068674 | None:intergenic | 25.0% |
| ! | TATTAACAATTAACTGTGCA+TGG | + | chr7.2:7069820-7069839 | MS.gene23038:intron | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | + | chr7.2:7067408-7067427 | MS.gene23038:intron | 25.0% |
| ! | TGATTTATACTTGATAGAGA+AGG | + | chr7.2:7068856-7068875 | MS.gene23038:intron | 25.0% |
| ! | TTAATTCAAAGCAAAAACTG+AGG | + | chr7.2:7069906-7069925 | MS.gene23038:intron | 25.0% |
| ! | TTGTTTATTCTCACTTTGTT+TGG | + | chr7.2:7068532-7068551 | MS.gene23038:intron | 25.0% |
| ! | TTTGACAATGCATGTTTAAA+AGG | + | chr7.2:7068211-7068230 | MS.gene23038:intron | 25.0% |
| !! | ATTTTCATAAAACAAAGTCC+AGG | - | chr7.2:7068442-7068461 | None:intergenic | 25.0% |
| !! | CTTTAAAGATTGAATAATGG+TGG | - | chr7.2:7070217-7070236 | None:intergenic | 25.0% |
| !! | GTAATTTTTACTTGTACGAA+AGG | + | chr7.2:7069150-7069169 | MS.gene23038:intron | 25.0% |
| !!! | ACTATTTTAGCTGTTAAGAT+TGG | + | chr7.2:7068912-7068931 | MS.gene23038:intron | 25.0% |
| !!! | CTATTTTAGCTGTTAAGATT+GGG | + | chr7.2:7068913-7068932 | MS.gene23038:intron | 25.0% |
| !!! | GATGATTTTTTGTTTCCTAT+TGG | + | chr7.2:7068968-7068987 | MS.gene23038:intron | 25.0% |
| !!! | TATTTTAGCTGTTAAGATTG+GGG | + | chr7.2:7068914-7068933 | MS.gene23038:intron | 25.0% |
| AATACAAAATGCCATAATCC+AGG | - | chr7.2:7069575-7069594 | None:intergenic | 30.0% | |
| AATCTTGCATCATTACTACA+AGG | - | chr7.2:7069379-7069398 | None:intergenic | 30.0% | |
| ACCAGTTGTTAGAAGATATA+TGG | - | chr7.2:7070100-7070119 | None:intergenic | 30.0% | |
| ATCCTAAAACTAAAACTGGT+TGG | - | chr7.2:7069947-7069966 | None:intergenic | 30.0% | |
| ATCTTGCATCATTACTACAA+GGG | - | chr7.2:7069378-7069397 | None:intergenic | 30.0% | |
| CAAATGCATTATTACTGTTG+AGG | - | chr7.2:7068470-7068489 | None:intergenic | 30.0% | |
| CAATCTAAATAGGTCCTTAA+TGG | + | chr7.2:7067418-7067437 | MS.gene23038:intron | 30.0% | |
| CATTAAGGACCTATTTAGAT+TGG | - | chr7.2:7067420-7067439 | None:intergenic | 30.0% | |
| CGAGAAACAAATTGCAAATA+AGG | + | chr7.2:7069866-7069885 | MS.gene23038:intron | 30.0% | |
| CTGCTTAATATGTCTTGATT+TGG | + | chr7.2:7067960-7067979 | MS.gene23038:intron | 30.0% | |
| GGGAAAATAACAAAATGCAA+AGG | - | chr7.2:7067817-7067836 | None:intergenic | 30.0% | |
| TACAAAAAATGCCATCATTC+AGG | - | chr7.2:7068027-7068046 | None:intergenic | 30.0% | |
| TATACTTGATAGAGAAGGAT+AGG | + | chr7.2:7068861-7068880 | MS.gene23038:intron | 30.0% | |
| TCAGATAGAGCTAATACAAA+AGG | - | chr7.2:7068041-7068060 | None:intergenic | 30.0% | |
| TCCTAAAACTAAAACTGGTT+GGG | - | chr7.2:7069946-7069965 | None:intergenic | 30.0% | |
| TCGTAGAATCTGAATCTAAT+AGG | + | chr7.2:7067184-7067203 | MS.gene23038:intron | 30.0% | |
| ! | GCTTATTTGAGTTTATCTAC+CGG | - | chr7.2:7067398-7067417 | None:intergenic | 30.0% |
| !! | ATATGTCTTGATTTGGAGAA+TGG | + | chr7.2:7067967-7067986 | MS.gene23038:intron | 30.0% |
| !! | GATGGTATTTGTTTTCCTAT+TGG | + | chr7.2:7067993-7068012 | MS.gene23038:intron | 30.0% |
| !! | GTACTGAATTTGTTTTCTCT+TGG | + | chr7.2:7070245-7070264 | MS.gene23038:intron | 30.0% |
| !! | TTGTTTCCTATTGGTTTGAT+TGG | + | chr7.2:7068675-7068694 | MS.gene23038:intron | 30.0% |
| !!! | ATTTTAGCTGTTAAGATTGG+GGG | + | chr7.2:7068915-7068934 | MS.gene23038:intron | 30.0% |
| !!! | TATTTTCAAGTAACTCATGC+CGG | + | chr7.2:7067376-7067395 | MS.gene23038:intron | 30.0% |
| AAACAACGGAAAGAAACTCA+TGG | + | chr7.2:7067689-7067708 | MS.gene23038:CDS | 35.0% | |
| AACAAGTTGTTCATCCAAAC+AGG | - | chr7.2:7067211-7067230 | None:intergenic | 35.0% | |
| AATAATGGTGGTATACCTGT+TGG | - | chr7.2:7070205-7070224 | None:intergenic | 35.0% | |
| AATCCTACCCAAATTACACA+CGG | - | chr7.2:7069685-7069704 | None:intergenic | 35.0% | |
| ACAAGTTGTTCATCCAAACA+GGG | - | chr7.2:7067210-7067229 | None:intergenic | 35.0% | |
| AGCTTGACTTCGTTTAGATT+GGG | - | chr7.2:7067080-7067099 | None:intergenic | 35.0% | |
| AGGAACATATGTTGCATGTT+TGG | - | chr7.2:7067577-7067596 | None:intergenic | 35.0% | |
| ATACAAAAATGCCATCATGC+AGG | - | chr7.2:7068399-7068418 | None:intergenic | 35.0% | |
| ATCTAGCCAATCAAACCAAT+AGG | - | chr7.2:7068986-7069005 | None:intergenic | 35.0% | |
| ATTCAGGCATTCAAACCAAT+AGG | - | chr7.2:7068011-7068030 | None:intergenic | 35.0% | |
| CATCAACGATAACTTGAATC+GGG | - | chr7.2:7067770-7067789 | None:intergenic | 35.0% | |
| GCATCAACGATAACTTGAAT+CGG | - | chr7.2:7067771-7067790 | None:intergenic | 35.0% | |
| GCCATATATCTTCTAACAAC+TGG | + | chr7.2:7070096-7070115 | MS.gene23038:CDS | 35.0% | |
| GTGACAAATGATAAGGAGAA+TGG | - | chr7.2:7068064-7068083 | None:intergenic | 35.0% | |
| TAAAACTGGGAGCTGTTTAT+TGG | + | chr7.2:7068624-7068643 | MS.gene23038:intron | 35.0% | |
| TAAGACAATTGCTGAATGCT+TGG | + | chr7.2:7070146-7070165 | MS.gene23038:CDS | 35.0% | |
| TCTCAGCACATAACATTGAA+AGG | - | chr7.2:7069789-7069808 | None:intergenic | 35.0% | |
| TCTTGCATCATTACTACAAG+GGG | - | chr7.2:7069377-7069396 | None:intergenic | 35.0% | |
| TGTTAGCAAAGAACCAAACA+AGG | - | chr7.2:7070277-7070296 | None:intergenic | 35.0% | |
| TTGATTGACTGTTTCCCTAT+TGG | + | chr7.2:7068365-7068384 | MS.gene23038:intron | 35.0% | |
| ! | CTCTTGGATTTTTCCTTGTT+TGG | + | chr7.2:7070261-7070280 | MS.gene23038:intron | 35.0% |
| ! | GAAATCTTTTCTTGTGGTAG+AGG | + | chr7.2:7069466-7069485 | MS.gene23038:intron | 35.0% |
| ! | TGATTTGGAGAATGGAATGA+TGG | + | chr7.2:7067975-7067994 | MS.gene23038:intron | 35.0% |
| !! | TAGGTGGGTTGGTTATTAAT+TGG | + | chr7.2:7068880-7068899 | MS.gene23038:intron | 35.0% |
| !!! | TACAACTAGCTTTTGATTGC+TGG | + | chr7.2:7069208-7069227 | MS.gene23038:intron | 35.0% |
| !!! | TCCCAACCAGTTTTAGTTTT+AGG | + | chr7.2:7069942-7069961 | MS.gene23038:intron | 35.0% |
| AAGTCAAGCTCTTCAACCAA+TGG | + | chr7.2:7067090-7067109 | MS.gene23038:CDS | 40.0% | |
| AATACAAAAGGCCATCATCC+TGG | - | chr7.2:7069282-7069301 | None:intergenic | 40.0% | |
| AATCCAGGCAATCAAACCAA+TGG | - | chr7.2:7069560-7069579 | None:intergenic | 40.0% | |
| AATTACACACGGCATCATCT+AGG | - | chr7.2:7069674-7069693 | None:intergenic | 40.0% | |
| ACCTACTTACTCATCCGAAT+CGG | + | chr7.2:7068330-7068349 | MS.gene23038:intron | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | + | chr7.2:7067663-7067682 | MS.gene23038:CDS | 40.0% | |
| ACTTGATAGAGAAGGATAGG+TGG | + | chr7.2:7068864-7068883 | MS.gene23038:intron | 40.0% | |
| AGAGAAGATGCAACCAGAAT+TGG | + | chr7.2:7070012-7070031 | MS.gene23038:CDS | 40.0% | |
| AGATGATGCCGTGTGTAATT+TGG | + | chr7.2:7069674-7069693 | MS.gene23038:intron | 40.0% | |
| AGATTACCGATCTGTCTCTT+GGG | + | chr7.2:7067529-7067548 | MS.gene23038:intron | 40.0% | |
| ATACAAAAACGCCATCATCC+AGG | - | chr7.2:7068700-7068719 | None:intergenic | 40.0% | |
| ATCCAGGCAATCAAACCAAT+AGG | - | chr7.2:7068684-7068703 | None:intergenic | 40.0% | |
| ATCCAGGCAATCAAACCAAT+GGG | - | chr7.2:7068684-7068703 | None:intergenic | 40.0% | |
| ATGATGCACGGTAGAAACAA+CGG | + | chr7.2:7067675-7067694 | MS.gene23038:CDS | 40.0% | |
| ATGCAGGCAATCAAACCAAT+AGG | - | chr7.2:7068383-7068402 | None:intergenic | 40.0% | |
| ATTACACACGGCATCATCTA+GGG | - | chr7.2:7069673-7069692 | None:intergenic | 40.0% | |
| CAGCTATGCGATCAAGAAAA+AGG | + | chr7.2:7070310-7070329 | MS.gene23038:intron | 40.0% | |
| CTTGATAGAGAAGGATAGGT+GGG | + | chr7.2:7068865-7068884 | MS.gene23038:intron | 40.0% | |
| GAAAGAAACTCATGGCTGTT+AGG | + | chr7.2:7067697-7067716 | MS.gene23038:CDS | 40.0% | |
| GAGCTTGACTTCGTTTAGAT+TGG | - | chr7.2:7067081-7067100 | None:intergenic | 40.0% | |
| GATGATGCCGTGTGTAATTT+GGG | + | chr7.2:7069675-7069694 | MS.gene23038:intron | 40.0% | |
| TAGCAAGTGAATGATCTCCA+TGG | - | chr7.2:7067736-7067755 | None:intergenic | 40.0% | |
| TAGGATCATTAAGCATGCCA+TGG | + | chr7.2:7067716-7067735 | MS.gene23038:CDS | 40.0% | |
| TCAAAGCAAAAACTGAGGCT+TGG | + | chr7.2:7069911-7069930 | MS.gene23038:intron | 40.0% | |
| TGAATCTAATAGGCCCTGTT+TGG | + | chr7.2:7067194-7067213 | MS.gene23038:intron | 40.0% | |
| TGCAGGCAATCAAACCAATA+GGG | - | chr7.2:7068382-7068401 | None:intergenic | 40.0% | |
| TGGTTTGAATGCCTGAATGA+TGG | + | chr7.2:7068013-7068032 | MS.gene23038:intron | 40.0% | |
| TGGTTTGATTGCCTGGATTA+TGG | + | chr7.2:7069561-7069580 | MS.gene23038:intron | 40.0% | |
| TGTTCCTAAATGCAGCTTCA+CGG | - | chr7.2:7070125-7070144 | None:intergenic | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | chr7.2:7067648-7067667 | None:intergenic | 40.0% | |
| ! | AACTTTTCATCCTCCCGATT+CGG | - | chr7.2:7068347-7068366 | None:intergenic | 40.0% |
| ! | ATTCTGGTTGCATCTTCTCT+AGG | - | chr7.2:7070012-7070031 | None:intergenic | 40.0% |
| ! | GAGCTGTTTATTGGTTGAAC+TGG | + | chr7.2:7068633-7068652 | MS.gene23038:intron | 40.0% |
| ! | TGGTTTGATTGGCTAGATGA+TGG | + | chr7.2:7068988-7069007 | MS.gene23038:intron | 40.0% |
| !! | TAGCTTTTGATTGCTGGAAC+CGG | + | chr7.2:7069214-7069233 | MS.gene23038:intron | 40.0% |
| !! | TTCCTATTGGTTTGATTGCC+TGG | + | chr7.2:7068679-7068698 | MS.gene23038:intron | 40.0% |
| AACTCCAGCAGATCCAATTC+TGG | - | chr7.2:7070028-7070047 | None:intergenic | 45.0% | |
| ACATATGTTCCTCACACTGC+TGG | + | chr7.2:7067585-7067604 | MS.gene23038:CDS | 45.0% | |
| AGATTGGGATCAACTTCGAC+TGG | - | chr7.2:7067065-7067084 | None:intergenic | 45.0% | |
| ATACCTGTTGGATGAACCCT+TGG | - | chr7.2:7070193-7070212 | None:intergenic | 45.0% | |
| ATAGAGAAGGATAGGTGGGT+TGG | + | chr7.2:7068869-7068888 | MS.gene23038:intron | 45.0% | |
| ATCCTGGCTATCAACCCAAT+AGG | - | chr7.2:7069266-7069285 | None:intergenic | 45.0% | |
| ATGCCGTGTGTAATTTGGGT+AGG | + | chr7.2:7069679-7069698 | MS.gene23038:intron | 45.0% | |
| CAAGAGACAGATCGGTAATC+TGG | - | chr7.2:7067530-7067549 | None:intergenic | 45.0% | |
| CAGATTACCGATCTGTCTCT+TGG | + | chr7.2:7067528-7067547 | MS.gene23038:intron | 45.0% | |
| CCTACTTACTCATCCGAATC+GGG | + | chr7.2:7068331-7068350 | MS.gene23038:intron | 45.0% | |
| CGATAACTTGAATCGGGTTC+TGG | - | chr7.2:7067764-7067783 | None:intergenic | 45.0% | |
| CTGTCTCTTGGGGATTACAT+TGG | + | chr7.2:7067540-7067559 | MS.gene23038:CDS | 45.0% | |
| GAACTCATTAACGCTGCCAA+GGG | + | chr7.2:7070174-7070193 | MS.gene23038:CDS | 45.0% | |
| GATTACCGATCTGTCTCTTG+GGG | + | chr7.2:7067530-7067549 | MS.gene23038:intron | 45.0% | |
| GATTGGGATCAACTTCGACT+GGG | - | chr7.2:7067064-7067083 | None:intergenic | 45.0% | |
| GCTCTATCTGATCATTCTCC+TGG | + | chr7.2:7068421-7068440 | MS.gene23038:intron | 45.0% | |
| GGCAGCGTTAATGAGTTCAT+CGG | - | chr7.2:7070172-7070191 | None:intergenic | 45.0% | |
| GTAATCCCCAAGAGACAGAT+CGG | - | chr7.2:7067538-7067557 | None:intergenic | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | chr7.2:7067649-7067668 | None:intergenic | 45.0% | |
| GTTCCTAAATGCAGCTTCAC+GGG | - | chr7.2:7070124-7070143 | None:intergenic | 45.0% | |
| TAAGATTGGGGGCTGTTGAT+TGG | + | chr7.2:7068926-7068945 | MS.gene23038:intron | 45.0% | |
| TCCTGGCTATCAACCCAATA+GGG | - | chr7.2:7069265-7069284 | None:intergenic | 45.0% | |
| TGAACTCATTAACGCTGCCA+AGG | + | chr7.2:7070173-7070192 | MS.gene23038:CDS | 45.0% | |
| TGAGATTGAGAGAGTTGCCA+AGG | + | chr7.2:7070334-7070353 | MS.gene23038:CDS | 45.0% | |
| TGGATATCTCTCCTCTTCGT+CGG | + | chr7.2:7070064-7070083 | MS.gene23038:CDS | 45.0% | |
| TGGTTTGATTGCCTGCATGA+TGG | + | chr7.2:7068385-7068404 | MS.gene23038:intron | 45.0% | |
| TGGTTTGATTGCCTGGATGA+TGG | + | chr7.2:7068686-7068705 | MS.gene23038:intron | 45.0% | |
| TGTACGAAAGGAAAGCAACC+TGG | + | chr7.2:7069162-7069181 | MS.gene23038:intron | 45.0% | |
| TTGGATCTGCTGGAGTTGTT+AGG | + | chr7.2:7070031-7070050 | MS.gene23038:CDS | 45.0% | |
| !! | TTCCCATTGGTTTGATTGCC+TGG | + | chr7.2:7069554-7069573 | MS.gene23038:intron | 45.0% |
| AACTTCGACTGGGATAGCGA+CGG | - | chr7.2:7067054-7067073 | None:intergenic | 50.0% | |
| ACTTACTCATCCGAATCGGG+AGG | + | chr7.2:7068334-7068353 | MS.gene23038:intron | 50.0% | |
| ATGTTCCTCACACTGCTGGT+AGG | + | chr7.2:7067589-7067608 | MS.gene23038:CDS | 50.0% | |
| CTCAGTGTCCCATTGTTGAG+AGG | + | chr7.2:7067637-7067656 | MS.gene23038:CDS | 50.0% | |
| GATCTGCTGGAGTTGTTAGG+AGG | + | chr7.2:7070034-7070053 | MS.gene23038:CDS | 50.0% | |
| GCAACCAGAATTGGATCTGC+TGG | + | chr7.2:7070021-7070040 | MS.gene23038:CDS | 50.0% | |
| GGATATCTCTCCTCTTCGTC+GGG | + | chr7.2:7070065-7070084 | MS.gene23038:CDS | 50.0% | |
| GGGGATTACATTGGAGCAAG+AGG | + | chr7.2:7067549-7067568 | MS.gene23038:CDS | 50.0% | |
| TCCTCTTCGTCGGGTTAATC+AGG | + | chr7.2:7070074-7070093 | MS.gene23038:CDS | 50.0% | |
| TCGTTGATGCTGTCGTCAAC+AGG | + | chr7.2:7067781-7067800 | MS.gene23038:CDS | 50.0% | |
| ! | ATTGGGGGCTGTTGATTGGT+TGG | + | chr7.2:7068930-7068949 | MS.gene23038:intron | 50.0% |
| !! | CCCGATTCGGATGAGTAAGT+AGG | - | chr7.2:7068334-7068353 | None:intergenic | 50.0% |
| !! | GGTACTCAAAGAAGCGCTTC+AGG | + | chr7.2:7067610-7067629 | MS.gene23038:CDS | 50.0% |
| !! | TCCCTATTGGGTTGATAGCC+AGG | + | chr7.2:7069261-7069280 | MS.gene23038:intron | 50.0% |
| !! | TGGGTTGATAGCCAGGATGA+TGG | + | chr7.2:7069268-7069287 | MS.gene23038:intron | 50.0% |
| ACAACTTGCAGCGTGCATCC+AGG | - | chr7.2:7069183-7069202 | None:intergenic | 55.0% | |
| AGTTGTTAGGAGGCAGGCTG+TGG | + | chr7.2:7070044-7070063 | MS.gene23038:CDS | 55.0% | |
| ATGGAGCTTCGACGACGTTC+AGG | + | chr7.2:7067109-7067128 | MS.gene23038:CDS | 55.0% | |
| CTGCCAAGGGTTCATCCAAC+AGG | + | chr7.2:7070187-7070206 | MS.gene23038:CDS | 55.0% | |
| GAACGTCGTCGAAGCTCCAT+TGG | - | chr7.2:7067109-7067128 | None:intergenic | 55.0% | |
| GAGTACCTACCAGCAGTGTG+AGG | - | chr7.2:7067597-7067616 | None:intergenic | 55.0% | |
| GCCTGATTAACCCGACGAAG+AGG | - | chr7.2:7070078-7070097 | None:intergenic | 55.0% | |
| GTGCCCGTGAAGCTGCATTT+AGG | + | chr7.2:7070118-7070137 | MS.gene23038:CDS | 55.0% | |
| TGCTGGAGTTGTTAGGAGGC+AGG | + | chr7.2:7070038-7070057 | MS.gene23038:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7067038 | 7070367 | 7067038 | ID=MS.gene23038 |
| chr7.2 | mRNA | 7067038 | 7070367 | 7067038 | ID=MS.gene23038.t1;Parent=MS.gene23038 |
| chr7.2 | exon | 7067038 | 7067130 | 7067038 | ID=MS.gene23038.t1.exon1;Parent=MS.gene23038.t1 |
| chr7.2 | CDS | 7067038 | 7067130 | 7067038 | ID=cds.MS.gene23038.t1;Parent=MS.gene23038.t1 |
| chr7.2 | exon | 7067531 | 7067802 | 7067531 | ID=MS.gene23038.t1.exon2;Parent=MS.gene23038.t1 |
| chr7.2 | CDS | 7067531 | 7067802 | 7067531 | ID=cds.MS.gene23038.t1;Parent=MS.gene23038.t1 |
| chr7.2 | exon | 7070005 | 7070208 | 7070005 | ID=MS.gene23038.t1.exon3;Parent=MS.gene23038.t1 |
| chr7.2 | CDS | 7070005 | 7070208 | 7070005 | ID=cds.MS.gene23038.t1;Parent=MS.gene23038.t1 |
| chr7.2 | exon | 7070313 | 7070367 | 7070313 | ID=MS.gene23038.t1.exon4;Parent=MS.gene23038.t1 |
| chr7.2 | CDS | 7070313 | 7070367 | 7070313 | ID=cds.MS.gene23038.t1;Parent=MS.gene23038.t1 |
| Gene Sequence |
| Protein sequence |
