AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070600.t1 MTR_1g054310 98.326 239 4 0 1 239 1 239 2.15e-176 484
MS.gene070600.t1 MTR_7g107380 97.000 200 4 1 40 239 9 206 1.01e-141 395
MS.gene070600.t1 MTR_0515s0010 89.744 78 8 0 76 153 3 80 6.95e-47 150
MS.gene070600.t1 MTR_0306s0010 89.744 78 8 0 76 153 3 80 6.95e-47 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070600.t1 AT2G37270 92.105 190 14 1 51 239 18 207 4.09e-129 363
MS.gene070600.t1 AT2G37270 92.105 190 14 1 51 239 18 207 4.09e-129 363
MS.gene070600.t1 AT3G11940 90.000 190 18 1 51 239 18 207 2.91e-127 358
MS.gene070600.t1 AT3G11940 90.000 190 18 1 51 239 18 207 2.91e-127 358

Find 57 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCAATGCACCAAAATT+AGG 0.162365 1.1:-42201393 MS.gene070600:CDS
GCATCAACAATGACCTGAAT+TGG 0.291343 1.1:+42200431 None:intergenic
CAGATTACTGATTTGTCTCT+TGG 0.294356 1.1:-42200668 MS.gene070600:CDS
GAACCAATGCACCAAAATTA+GGG 0.331625 1.1:-42201392 MS.gene070600:CDS
GATACTCGAAGAAGCGATTC+AGG 0.345165 1.1:-42200589 MS.gene070600:CDS
AGCTTGACTTCGATCAGGTT+TGG 0.359219 1.1:+42201174 None:intergenic
CATTCTCAGCAGCTTCAGTT+TGG 0.372538 1.1:-42201346 MS.gene070600:CDS
CTGGAGCTTCGATGACGTTC+AGG 0.377509 1.1:-42201142 MS.gene070600:intron
CAATGACCTGAATTGGGTTC+TGG 0.383650 1.1:+42200438 None:intergenic
TGGAACATATGTTGCATGTT+TGG 0.388336 1.1:+42200625 None:intergenic
AGATTACTGATTTGTCTCTT+GGG 0.391228 1.1:-42200667 MS.gene070600:CDS
GGATCTGAAACGACTGCAAC+AGG 0.391313 1.1:+42201195 None:intergenic
AACCGACCAGAACCCAATTC+AGG 0.402601 1.1:-42200444 MS.gene070600:CDS
GAAAGAAGCTTATGGCTGTT+AGG 0.402629 1.1:-42200502 MS.gene070600:CDS
CAAACTGAAGCTGCTGAGAA+TGG 0.431599 1.1:+42201347 None:intergenic
TTGTTGATGCTGTCGTCAAC+AGG 0.441734 1.1:-42200418 MS.gene070600:intron
GCCATCTATCTTCTAACTAC+TGG 0.451088 1.1:-42198538 MS.gene070600:CDS
GAACTTATTAATGCAGCAAA+AGG 0.453667 1.1:-42198460 MS.gene070600:CDS
GAACAATGGAAAGAAGCTTA+TGG 0.462961 1.1:-42200510 MS.gene070600:CDS
AATTGTCTTAATATTTCTAA+AGG 0.465228 1.1:+42198501 None:intergenic
CGTGAAGATGCTACTCGTAT+TGG 0.468388 1.1:-42198622 MS.gene070600:CDS
TGAAGAGCTTGACTTCGATC+AGG 0.472581 1.1:+42201169 None:intergenic
GTTGCTAAGGCAAATCGTTA+AGG 0.480990 1.1:-42198274 None:intergenic
CAGCAAAAGGATCATCCAAC+AGG 0.484289 1.1:-42198447 MS.gene070600:intron
TATGTGATAAACCCTAATTT+TGG 0.490722 1.1:+42201381 None:intergenic
GCTACTCGTATTGGTTCTGC+TGG 0.495376 1.1:-42198613 MS.gene070600:CDS
GATTACTGATTTGTCTCTTG+GGG 0.496398 1.1:-42200666 MS.gene070600:CDS
AAGTCAAGCTCTTCAACCGC+TGG 0.503610 1.1:-42201161 MS.gene070600:CDS
CATCAACAATGACCTGAATT+GGG 0.506610 1.1:+42200432 None:intergenic
ACCAGTAGTTAGAAGATAGA+TGG 0.507365 1.1:+42198537 None:intergenic
TTGTCTCTTGGGGATTACAT+TGG 0.513322 1.1:-42200656 MS.gene070600:CDS
TGAAATTGAAAGAGTTGCTA+AGG 0.514135 1.1:-42198287 MS.gene070600:CDS
GGCTTGATTCACACGACGAA+GGG 0.519901 1.1:+42198558 None:intergenic
TGCTGGAGTTGTAAGAAGAC+AGG 0.532743 1.1:-42198596 MS.gene070600:CDS
AACCGTGATTGAGGTGGATG+CGG 0.535990 1.1:+42201320 None:intergenic
ACATATGTTCCACACACTGC+TGG 0.537649 1.1:-42200614 MS.gene070600:CDS
TTAGTGAGCCTCTCAACAAT+GGG 0.543323 1.1:+42200554 None:intergenic
TAGGATCATCAAGCATGCTA+TGG 0.558540 1.1:-42200483 MS.gene070600:CDS
CTAACTCTCTCATGATGCAT+GGG 0.561374 1.1:-42200535 MS.gene070600:CDS
GTTAGTGAGCCTCTCAACAA+TGG 0.562680 1.1:+42200553 None:intergenic
ACTAACTCTCTCATGATGCA+TGG 0.563337 1.1:-42200536 MS.gene070600:CDS
ATGATGCATGGGAGGAACAA+TGG 0.566550 1.1:-42200524 MS.gene070600:CDS
AAATGAACGAACCGTGATTG+AGG 0.567407 1.1:+42201311 None:intergenic
AGTTGTAAGAAGACAGGCTG+TGG 0.574582 1.1:-42198590 MS.gene070600:CDS
TGCCGCATCCACCTCAATCA+CGG 0.580034 1.1:-42201322 MS.gene070600:intron
CTCAGTGTCCCATTGTTGAG+AGG 0.591866 1.1:-42200562 MS.gene070600:CDS
TTCTTCAATGACATCAGCCA+TGG 0.596830 1.1:+42201218 None:intergenic
GACCTGAATTGGGTTCTGGT+CGG 0.606242 1.1:+42200442 None:intergenic
GAAGCTGCTGAGAATGGAGA+AGG 0.631702 1.1:+42201353 None:intergenic
GAGTATCTACCAGCAGTGTG+TGG 0.639793 1.1:+42200605 None:intergenic
TGAACGAACCGTGATTGAGG+TGG 0.645612 1.1:+42201314 None:intergenic
ACTCTCTCATGATGCATGGG+AGG 0.648954 1.1:-42200532 MS.gene070600:CDS
GAACGTCATCGAAGCTCCAG+CGG 0.655762 1.1:+42201145 None:intergenic
TGCTGAGAATGGAGAAGGTG+TGG 0.656611 1.1:+42201358 None:intergenic
TGGCTTGATTCACACGACGA+AGG 0.656812 1.1:+42198557 None:intergenic
GCTTGATTCACACGACGAAG+GGG 0.665666 1.1:+42198559 None:intergenic
ATACGAGTAGCATCTTCACG+AGG 0.785565 1.1:+42198625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAATTCTATTTATTA+AGG + chr1.1:42200752-42200771 None:intergenic 10.0%
!! AATTTAAACAAAAAATTAAC+TGG + chr1.1:42199485-42199504 None:intergenic 10.0%
!! TTAGAAATTAATAAGAAATA+TGG - chr1.1:42200186-42200205 MS.gene070600:intron 10.0%
!!! TTCTTTTTTTAAATTTTTTC+TGG - chr1.1:42199730-42199749 MS.gene070600:intron 10.0%
!! ATATTAAAAAAACAATAAGC+TGG + chr1.1:42199858-42199877 None:intergenic 15.0%
!! TAAATTCTAATTTGACATAT+TGG - chr1.1:42199499-42199518 MS.gene070600:intron 15.0%
!!! AATTGTCTTAATATTTCTAA+AGG + chr1.1:42201172-42201191 None:intergenic 15.0%
!!! TAATATTTCTATGTTTTTGA+TGG - chr1.1:42199636-42199655 MS.gene070600:intron 15.0%
!!! TTTTAATTAGTTTCATGTTT+AGG - chr1.1:42198580-42198599 MS.gene070600:CDS 15.0%
!! AAAAAATTAACTGGAATGTT+AGG + chr1.1:42199476-42199495 None:intergenic 20.0%
!! AAAAATGTAGTGATTAATGT+TGG - chr1.1:42198959-42198978 MS.gene070600:intron 20.0%
!! AAAAGGTAGTAGTATATTAA+TGG + chr1.1:42200971-42200990 None:intergenic 20.0%
!! AATTGAAAATAAAAATGAGC+TGG + chr1.1:42200486-42200505 None:intergenic 20.0%
!! ATTGAAAATAAAAATGAGCT+GGG + chr1.1:42200485-42200504 None:intergenic 20.0%
!! CAAGAGATGAAAAAAAATTA+TGG + chr1.1:42201289-42201308 None:intergenic 20.0%
!! GTATTTGAAAGGAAAAAAAT+TGG + chr1.1:42200330-42200349 None:intergenic 20.0%
!! GTTATCATAAATAAACACTT+TGG - chr1.1:42199610-42199629 MS.gene070600:intron 20.0%
!! TCATAAGTCAAAGAATTAAA+AGG + chr1.1:42201321-42201340 None:intergenic 20.0%
!!! AAATTTTTTCTGGTTTGATA+TGG - chr1.1:42199740-42199759 MS.gene070600:intron 20.0%
!!! ATGAATAATTTGTTTCCTAT+TGG - chr1.1:42200404-42200423 MS.gene070600:intron 20.0%
!!! ATGAATATTTGTTTTCCTAT+TGG - chr1.1:42200070-42200089 MS.gene070600:intron 20.0%
!!! TTTGTTGAAATTTTTGTAGT+TGG - chr1.1:42198669-42198688 MS.gene070600:intron 20.0%
!!! TTTTATTTTCTGGTTTGATA+TGG - chr1.1:42199368-42199387 MS.gene070600:intron 20.0%
!!! TTTTGTTATTCCAGATTATT+TGG - chr1.1:42198796-42198815 MS.gene070600:intron 20.0%
! AAAAAAAGAACAACCTAATC+AGG + chr1.1:42199720-42199739 None:intergenic 25.0%
! ATCAGATCCAAATTCAAAAA+AGG + chr1.1:42200988-42201007 None:intergenic 25.0%
! ATGAATATTTGTTTCCCTAT+TGG - chr1.1:42199774-42199793 MS.gene070600:intron 25.0%
! ATTTGTGTATTACTTGTGAT+TGG - chr1.1:42200810-42200829 MS.gene070600:intron 25.0%
! CATTACTAACGAAACATAAA+GGG + chr1.1:42199541-42199560 None:intergenic 25.0%
! CTTTACTAATGAAACATATG+AGG + chr1.1:42199926-42199945 None:intergenic 25.0%
! TAAAACAAATTGCATCATTC+TGG + chr1.1:42199808-42199827 None:intergenic 25.0%
! TAATTATTGTGATCCTGATT+AGG - chr1.1:42199704-42199723 MS.gene070600:intron 25.0%
! TCATTACTAACGAAACATAA+AGG + chr1.1:42199542-42199561 None:intergenic 25.0%
! TCTCTTATAAGTAACACAAA+AGG + chr1.1:42200237-42200256 None:intergenic 25.0%
! TTCATGAGTTATGATTATCT+TGG - chr1.1:42200576-42200595 MS.gene070600:CDS 25.0%
! TTCATTAGTAAAGACTGTTA+AGG - chr1.1:42199933-42199952 MS.gene070600:intron 25.0%
!! TATGTGATAAACCCTAATTT+TGG + chr1.1:42198292-42198311 None:intergenic 25.0%
!!! ACTACTACCTTTTTTGAATT+TGG - chr1.1:42200978-42200997 MS.gene070600:intron 25.0%
!!! ATGAATTTTTGTTTCCCTAT+TGG - chr1.1:42199402-42199421 MS.gene070600:intron 25.0%
AATACAAATTGCCATCATTC+TGG + chr1.1:42200104-42200123 None:intergenic 30.0%
AATGGCATATTTAAGCAACA+AGG + chr1.1:42200842-42200861 None:intergenic 30.0%
ACAAGAAACACCAAATAATC+TGG + chr1.1:42198809-42198828 None:intergenic 30.0%
ATATTAACCCTTTAGACGAT+GGG + chr1.1:42200890-42200909 None:intergenic 30.0%
ATGATTCACACGTATTTGAA+AGG + chr1.1:42200341-42200360 None:intergenic 30.0%
GAAACTGCGATAATAAGAAT+CGG - chr1.1:42200641-42200660 MS.gene070600:CDS 30.0%
GAACTTATTAATGCAGCAAA+AGG - chr1.1:42201210-42201229 MS.gene070600:CDS 30.0%
GTTAATATGGACTTGCAATT+AGG - chr1.1:42200902-42200921 MS.gene070600:intron 30.0%
TAGTGTTATGATTTACTTGC+TGG - chr1.1:42200360-42200379 MS.gene070600:intron 30.0%
TGAAATTGAAAGAGTTGCTA+AGG - chr1.1:42201383-42201402 MS.gene070600:CDS 30.0%
TTATTTACCCATCGTCTAAA+GGG - chr1.1:42200880-42200899 MS.gene070600:intron 30.0%
TTCGTTAGTAATGATTGTTG+AGG - chr1.1:42199548-42199567 MS.gene070600:intron 30.0%
! ATGATTGGTTATTTCCCTAT+TGG - chr1.1:42200675-42200694 MS.gene070600:intron 30.0%
! ATTTGAAAAAGCATACCTGT+TGG + chr1.1:42201241-42201260 None:intergenic 30.0%
! TATGAATCGTTGATTGTTGA+TGG - chr1.1:42199275-42199294 MS.gene070600:intron 30.0%
!! AGATTACTGATTTGTCTCTT+GGG - chr1.1:42199003-42199022 MS.gene070600:intron 30.0%
!!! TATTTTCTGGTTTGATATGG+AGG - chr1.1:42199371-42199390 MS.gene070600:intron 30.0%
AAAAAATGGCCTAGAATGTC+AGG + chr1.1:42200146-42200165 None:intergenic 35.0%
AAACGAACAATGAGAAACAG+TGG + chr1.1:42198422-42198441 None:intergenic 35.0%
AAGCTGGAATGATATGAGAA+TGG + chr1.1:42199842-42199861 None:intergenic 35.0%
AATGAGCTGGGAAATAAGAA+TGG + chr1.1:42200473-42200492 None:intergenic 35.0%
ACCAGTAGTTAGAAGATAGA+TGG + chr1.1:42201136-42201155 None:intergenic 35.0%
AGAAACAGTGGATACAGAAA+AGG + chr1.1:42198410-42198429 None:intergenic 35.0%
ATACATAAGTGCCATCATCA+AGG + chr1.1:42200709-42200728 None:intergenic 35.0%
ATCAAGGCAATCAAACCAAT+AGG + chr1.1:42200693-42200712 None:intergenic 35.0%
ATGCCATTGTTTACTTTCTG+TGG - chr1.1:42200854-42200873 MS.gene070600:intron 35.0%
CAACCACAGAAAGTAAACAA+TGG + chr1.1:42200860-42200879 None:intergenic 35.0%
CAAGTAATACACAAATGACG+AGG + chr1.1:42200806-42200825 None:intergenic 35.0%
CATATTAACCCTTTAGACGA+TGG + chr1.1:42200891-42200910 None:intergenic 35.0%
CATCAACAATGACCTGAATT+GGG + chr1.1:42199241-42199260 None:intergenic 35.0%
CATCGTCTAAAGGGTTAATA+TGG - chr1.1:42200889-42200908 MS.gene070600:intron 35.0%
GAACAATGGAAAGAAGCTTA+TGG - chr1.1:42199160-42199179 MS.gene070600:intron 35.0%
GAACCAATGCACCAAAATTA+GGG - chr1.1:42198278-42198297 MS.gene070600:CDS 35.0%
GTTATTTACCCATCGTCTAA+AGG - chr1.1:42200879-42200898 MS.gene070600:intron 35.0%
TAACTGGAATGTTAGGAGAA+TGG + chr1.1:42199469-42199488 None:intergenic 35.0%
TCAAGGCAATCAAACCAATA+GGG + chr1.1:42200692-42200711 None:intergenic 35.0%
TGAACCAATGCACCAAAATT+AGG - chr1.1:42198277-42198296 MS.gene070600:CDS 35.0%
TGGAACATATGTTGCATGTT+TGG + chr1.1:42199048-42199067 None:intergenic 35.0%
TGTTTGTGTATTTGTCGTGA+TGG - chr1.1:42200026-42200045 MS.gene070600:intron 35.0%
!! AAACCCTAATTTTGGTGCAT+TGG + chr1.1:42198284-42198303 None:intergenic 35.0%
!! CAGATTACTGATTTGTCTCT+TGG - chr1.1:42199002-42199021 MS.gene070600:intron 35.0%
!! GATTACTGATTTGTCTCTTG+GGG - chr1.1:42199004-42199023 MS.gene070600:intron 35.0%
!! TCTATGTTTTTGATGGCTGT+AGG - chr1.1:42199643-42199662 MS.gene070600:intron 35.0%
!! TTCTGGTTTGATATGGTGAA+TGG - chr1.1:42199747-42199766 MS.gene070600:intron 35.0%
AAATGAACGAACCGTGATTG+AGG + chr1.1:42198362-42198381 None:intergenic 40.0%
AATACAAGCTGCCATCATTC+TGG + chr1.1:42200438-42200457 None:intergenic 40.0%
ACTAACTCTCTCATGATGCA+TGG - chr1.1:42199134-42199153 MS.gene070600:intron 40.0%
ACTCTTGCAGTCAAACCAAT+AGG + chr1.1:42199420-42199439 None:intergenic 40.0%
ATTCTGGCAGTCAAACCAAT+AGG + chr1.1:42199792-42199811 None:intergenic 40.0%
CATACACAAGACAGATCTCA+CGG + chr1.1:42199684-42199703 None:intergenic 40.0%
CGAAGATTCGAAGAATGTGA+AGG + chr1.1:42198385-42198404 None:intergenic 40.0%
CTAACTCTCTCATGATGCAT+GGG - chr1.1:42199135-42199154 MS.gene070600:intron 40.0%
CTCTTGCAGTCAAACCAATA+GGG + chr1.1:42199419-42199438 None:intergenic 40.0%
GAAAGAAGCTTATGGCTGTT+AGG - chr1.1:42199168-42199187 MS.gene070600:intron 40.0%
GCATCAACAATGACCTGAAT+TGG + chr1.1:42199242-42199261 None:intergenic 40.0%
GCCATCTATCTTCTAACTAC+TGG - chr1.1:42201132-42201151 MS.gene070600:intron 40.0%
TAGGATCATCAAGCATGCTA+TGG - chr1.1:42199187-42199206 MS.gene070600:intron 40.0%
TCGGAGAATGACATGATGAT+TGG - chr1.1:42200660-42200679 MS.gene070600:CDS 40.0%
TGATGGCTTAGAATGGAGAA+TGG - chr1.1:42200043-42200062 MS.gene070600:intron 40.0%
TGGTTTGATTGCCTTGATGA+TGG - chr1.1:42200695-42200714 MS.gene070600:intron 40.0%
TTAGTGAGCCTCTCAACAAT+GGG + chr1.1:42199119-42199138 None:intergenic 40.0%
TTCTGGCAGTCAAACCAATA+GGG + chr1.1:42199791-42199810 None:intergenic 40.0%
TTCTTCAATGACATCAGCCA+TGG + chr1.1:42198455-42198474 None:intergenic 40.0%
TTGTCTCTTGGGGATTACAT+TGG - chr1.1:42199014-42199033 MS.gene070600:intron 40.0%
TTTGTCGTGATGGCTTAGAA+TGG - chr1.1:42200036-42200055 MS.gene070600:intron 40.0%
!! TACTTGCTGGCTTGATTTGA+AGG - chr1.1:42200373-42200392 MS.gene070600:intron 40.0%
!! TTCTGGTTTGATATGGAGGA+TGG - chr1.1:42199375-42199394 MS.gene070600:intron 40.0%
ACATATGTTCCACACACTGC+TGG - chr1.1:42199056-42199075 MS.gene070600:intron 45.0%
AGCTTGACTTCGATCAGGTT+TGG + chr1.1:42198499-42198518 None:intergenic 45.0%
AGTTGTAAGAAGACAGGCTG+TGG - chr1.1:42201080-42201099 MS.gene070600:intron 45.0%
ATACGAGTAGCATCTTCACG+AGG + chr1.1:42201048-42201067 None:intergenic 45.0%
ATGATGCATGGGAGGAACAA+TGG - chr1.1:42199146-42199165 MS.gene070600:intron 45.0%
ATTCTGGCGGTCAAACCAAT+AGG + chr1.1:42200422-42200441 None:intergenic 45.0%
CAAACTGAAGCTGCTGAGAA+TGG + chr1.1:42198326-42198345 None:intergenic 45.0%
CAATGACCTGAATTGGGTTC+TGG + chr1.1:42199235-42199254 None:intergenic 45.0%
CACTTGTGTCCTTTGTACAG+TGG - chr1.1:42201021-42201040 MS.gene070600:intron 45.0%
CAGCAAAAGGATCATCCAAC+AGG - chr1.1:42201223-42201242 MS.gene070600:intron 45.0%
CATTCTCAGCAGCTTCAGTT+TGG - chr1.1:42198324-42198343 MS.gene070600:intron 45.0%
CGTGAAGATGCTACTCGTAT+TGG - chr1.1:42201048-42201067 MS.gene070600:intron 45.0%
GACCATTCTCCTGACATTCT+AGG - chr1.1:42200134-42200153 MS.gene070600:intron 45.0%
GATACTCGAAGAAGCGATTC+AGG - chr1.1:42199081-42199100 MS.gene070600:intron 45.0%
GTTAGTGAGCCTCTCAACAA+TGG + chr1.1:42199120-42199139 None:intergenic 45.0%
TGAAGAGCTTGACTTCGATC+AGG + chr1.1:42198504-42198523 None:intergenic 45.0%
TGCTGGAGTTGTAAGAAGAC+AGG - chr1.1:42201074-42201093 MS.gene070600:intron 45.0%
TGGTTTGACTGCCAGAATGA+TGG - chr1.1:42199794-42199813 MS.gene070600:intron 45.0%
TTCGTTTCTCTATGCAGCCA+TGG - chr1.1:42198435-42198454 MS.gene070600:intron 45.0%
TTGTTGATGCTGTCGTCAAC+AGG - chr1.1:42199252-42199271 MS.gene070600:intron 45.0%
!! TGCTGGCTTGATTTGAAGGA+TGG - chr1.1:42200377-42200396 MS.gene070600:intron 45.0%
!! AAAAAATTATTTCAATTAAT+TGG - chr1.1:42198911-42198930 MS.gene070600:intron 5.0%
!!! TTTTATTAGATATAAAAAAA+TGG + chr1.1:42200160-42200179 None:intergenic 5.0%
!!! TTTTATTTTATTTTATTTTC+TGG - chr1.1:42199358-42199377 MS.gene070600:intron 5.0%
AACCGACCAGAACCCAATTC+AGG - chr1.1:42199226-42199245 MS.gene070600:intron 50.0%
AACCGTGATTGAGGTGGATG+CGG + chr1.1:42198353-42198372 None:intergenic 50.0%
AAGTCAAGCTCTTCAACCGC+TGG - chr1.1:42198509-42198528 MS.gene070600:CDS 50.0%
ACAAGCTGCCATCATTCTGG+CGG + chr1.1:42200435-42200454 None:intergenic 50.0%
ACTCTCTCATGATGCATGGG+AGG - chr1.1:42199138-42199157 MS.gene070600:intron 50.0%
CTCAGTGTCCCATTGTTGAG+AGG - chr1.1:42199108-42199127 MS.gene070600:intron 50.0%
GAAGCTGCTGAGAATGGAGA+AGG + chr1.1:42198320-42198339 None:intergenic 50.0%
GAGTATCTACCAGCAGTGTG+TGG + chr1.1:42199068-42199087 None:intergenic 50.0%
GCTTGATTCACACGACGAAG+GGG + chr1.1:42201114-42201133 None:intergenic 50.0%
GGCCTAGAATGTCAGGAGAA+TGG + chr1.1:42200139-42200158 None:intergenic 50.0%
GGCTTGATTCACACGACGAA+GGG + chr1.1:42201115-42201134 None:intergenic 50.0%
TCACGAGGACCACTGTACAA+AGG + chr1.1:42201033-42201052 None:intergenic 50.0%
TGAACGAACCGTGATTGAGG+TGG + chr1.1:42198359-42198378 None:intergenic 50.0%
TGCTGAGAATGGAGAAGGTG+TGG + chr1.1:42198315-42198334 None:intergenic 50.0%
TGGCTTGATTCACACGACGA+AGG + chr1.1:42201116-42201135 None:intergenic 50.0%
TGGTTTGACCGCCAGAATGA+TGG - chr1.1:42200424-42200443 MS.gene070600:CDS 50.0%
! GACCTGAATTGGGTTCTGGT+CGG + chr1.1:42199231-42199250 None:intergenic 50.0%
! GGATCTGAAACGACTGCAAC+AGG + chr1.1:42198478-42198497 None:intergenic 50.0%
!! GCTACTCGTATTGGTTCTGC+TGG - chr1.1:42201057-42201076 MS.gene070600:intron 50.0%
CTGGAGCTTCGATGACGTTC+AGG - chr1.1:42198528-42198547 MS.gene070600:CDS 55.0%
GAACGTCATCGAAGCTCCAG+CGG + chr1.1:42198528-42198547 None:intergenic 55.0%
TGCCGCATCCACCTCAATCA+CGG - chr1.1:42198348-42198367 MS.gene070600:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 42198276 42201416 42198276 ID=MS.gene070600
chr1.1 mRNA 42198276 42201416 42198276 ID=MS.gene070600.t1;Parent=MS.gene070600
chr1.1 exon 42201323 42201416 42201323 ID=MS.gene070600.t1.exon1;Parent=MS.gene070600.t1
chr1.1 CDS 42201323 42201416 42201323 ID=cds.MS.gene070600.t1;Parent=MS.gene070600.t1
chr1.1 exon 42201143 42201240 42201143 ID=MS.gene070600.t1.exon2;Parent=MS.gene070600.t1
chr1.1 CDS 42201143 42201240 42201143 ID=cds.MS.gene070600.t1;Parent=MS.gene070600.t1
chr1.1 exon 42200419 42200687 42200419 ID=MS.gene070600.t1.exon3;Parent=MS.gene070600.t1
chr1.1 CDS 42200419 42200687 42200419 ID=cds.MS.gene070600.t1;Parent=MS.gene070600.t1
chr1.1 exon 42198448 42198651 42198448 ID=MS.gene070600.t1.exon4;Parent=MS.gene070600.t1
chr1.1 CDS 42198448 42198651 42198448 ID=cds.MS.gene070600.t1;Parent=MS.gene070600.t1
chr1.1 exon 42198276 42198330 42198276 ID=MS.gene070600.t1.exon5;Parent=MS.gene070600.t1
chr1.1 CDS 42198276 42198330 42198276 ID=cds.MS.gene070600.t1;Parent=MS.gene070600.t1
Gene Sequence

>MS.gene070600

ATGAACCAATGCACCAAAATTAGGGTTTATCACATACCACACCTTCTCCATTCTCAGCAGCTTCAGTTTGGTTGCCGCATCCACCTCAATCACGGTTCGTTCATTTCCTTCACATTCTTCGAATCTTCGTTCCTTTTCTGTATCCACTGTTTCTCATTGTTCGTTTCTCTATGCAGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGGTAATTTTTTCACATTTCTTCAGATTTAGTTTTTAATTAGTTTCATGTTTAGGTTAATTCTTAATTAATTCTTAATTACTCTGTCTGAAATGTTGTAAAAATTTATGATTTTTTTGTTGTTTGTTGAAATTTTTGTAGTTGGTGTTTTAGTTTTCTGATGTATCAACTGAATTTATTTTTTATTTCAATTAATTGAATTTTTATTGTGTTTTAGTAATTTAAAAATGTTGTGATTAGTTTTGCAATTTTTGTTATTCCAGATTATTTGGTGTTTCTTGTTTTAGTTTTCTGATAGCTAATGAAAAGCAATGAATTTTCTCTAAAAAATATGTTTTAGTTTTCTGATGTATTATGCTGCAAAAAAAAATTATTTCAATTAATTGGTTTTTTTATTGTGTTTTAGTGATAAAAAAATGTAGTGATTAATGTTGGAATTTTGATTTTGATTATATCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAACATGCAACATATGTTCCACACACTGCTGGTAGATACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTAACCGACCAGAACCCAATTCAGGTCATTGTTGATGCTGTCGTCAACAGGTATGAATCGTTGATTGTTGATGGCTGTAGAAATTTGAGTTTGATATTGTAAAATTGTTGATGTTTTTCAATTATTGAAACAATTTTTATTTTATTTTATTTTCTGGTTTGATATGGAGGATGGAGTGATGAATTTTTGTTTCCCTATTGGTTTGACTGCAAGAGTGATGCAATTTTATTAGAACTATCTGACCATTCTCCTAACATTCCAGTTAATTTTTTGTTTAAATTCTAATTTGACATATTGGAACGTATGAAGATAAACCCTTTATGTTTCGTTAGTAATGATTGTTGAGGACATTGTAAAGAAACACTTTGAGTAAATTATGTGTGCAAGTTATCATAAATAAACACTTTGGAAATAATATTTCTATGTTTTTGATGGCTGTAGGAAATTTGAGTTGATACCGTGAGATCTGTCTTGTGTATGTAATTATTGTGATCCTGATTAGGTTGTTCTTTTTTTAAATTTTTTCTGGTTTGATATGGTGAATGGAATGATGAATATTTGTTTCCCTATTGGTTTGACTGCCAGAATGATGCAATTTGTTTTAAAACTATCTGACCATTCTCATATCATTCCAGCTTATTGTTTTTTTAATATCTAATTAGATTAGATATGTTTTTTATTATTTTTGATGAAGATATGCCTCATATGTTTCATTAGTAAAGACTGTTAAGGAGATTGAAAAGAAGCTGTTACTGAAATAAACATTTGAATTATTACTTGTAAATGATTTGAATTTGAATGATGTTTGTGTATTTGTCGTGATGGCTTAGAATGGAGAATGGAGTGATGAATATTTGTTTTCCTATTGGTTTGACTGCCAGAATGATGGCAATTTGTATTAGCTCTATCTGACCATTCTCCTGACATTCTAGGCCATTTTTTTATATCTAATAAAAAATTAATTAGAAATTAATAAGAAATATGGTTCTGTTTCAGCATGAAAACAACTTCCTTTTGTGTTACTTATAAGAGACAACACTATAAAAGATATTTATAAGAAATACTCAAGTAATTAAAGTTAAAGTTGTTGTAAACAAACTTTGCCAATTTTTTTCCTTTCAAATACGTGTGAATCATAGTGTTATGATTTACTTGCTGGCTTGATTTGAAGGATGGAATGATGAATAATTTGTTTCCTATTGGTTTGACCGCCAGAATGATGGCAGCTTGTATTAGCTCTATCTGACCATTCTTATTTCCCAGCTCATTTTTATTTTCAATTTATTACAAACTAATCACTTTGCAGAAGAAATGATATTGTTAGATAATCACAGCTTTTTGATATCTTACATTTCATGAGTTATGATTATCTTGGCTGTTTTGTTCGATTTTAAATCTACTTTCGTTTTTAAGCATAGAAACTGCGATAATAAGAATCGGAGAATGACATGATGATTGGTTATTTCCCTATTGGTTTGATTGCCTTGATGATGGCACTTATGTATTAGCTCTATCTGATCATTCTCCTTAATAAATAGAATTTTGATTGTTTTTATCTGTTTAATTGATTGATGAATTTCCTCGTCATTTGTGTATTACTTGTGATTGGTTGTTGCCTTGTTGCTTAAATATGCCATTGTTTACTTTCTGTGGTTGTTATTTACCCATCGTCTAAAGGGTTAATATGGACTTGCAATTAGGATGTGTGTTTTGTCAAGATTGCAATTTATGCTGTTTTCATGTTCCATTAATATACTACTACCTTTTTTGAATTTGGATCTGATTTATTTGTGTATGCACTTGTGTCCTTTGTACAGTGGTCCTCGTGAAGATGCTACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCACGTGAAGCTGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGGTATGCTTTTTCAAATTTTATCTGTGTACACATGCAGTCTTCCATAATTTTTTTTCATCTCTTGTGTTTTAGTCCTTTTAATTCTTTGACTTATGATAAATACATTATCTCTTTCAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA
Protein sequence

>MS.gene070600.t1

MNQCTKIRVYHIPHLLHSQQLQFGCRIHLNHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR