Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39207.t1 | XP_013467694.1 | 100 | 207 | 0 | 0 | 1 | 207 | 33 | 239 | 2.60E-108 | 401.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39207.t1 | O65731 | 94.4 | 196 | 10 | 1 | 13 | 207 | 2 | 197 | 5.2e-97 | 355.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39207.t1 | A0A072VJE7 | 100.0 | 207 | 0 | 0 | 1 | 207 | 33 | 239 | 1.9e-108 | 401.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene39207 | 0.835282 | 1.84E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene39207 | 0.850171 | 2.02E-60 | -1.69E-46 |
| MS.gene049873 | MS.gene39207 | 0.814606 | 1.41E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene39207 | 0.821912 | 3.14E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene39207 | 0.823418 | 1.40E-53 | -1.69E-46 |
| MS.gene050916 | MS.gene39207 | 0.811182 | 7.96E-51 | -1.69E-46 |
| MS.gene051330 | MS.gene39207 | 0.847363 | 1.21E-59 | -1.69E-46 |
| MS.gene051687 | MS.gene39207 | 0.818655 | 1.75E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene39207 | 0.84755 | 1.08E-59 | -1.69E-46 |
| MS.gene051746 | MS.gene39207 | 0.846255 | 2.44E-59 | -1.69E-46 |
| MS.gene051748 | MS.gene39207 | 0.830175 | 3.40E-55 | -1.69E-46 |
| MS.gene051903 | MS.gene39207 | 0.864109 | 1.54E-64 | -1.69E-46 |
| MS.gene052947 | MS.gene39207 | 0.890047 | 1.40E-73 | -1.69E-46 |
| MS.gene053294 | MS.gene39207 | 0.834626 | 2.69E-56 | -1.69E-46 |
| MS.gene05365 | MS.gene39207 | 0.816344 | 5.80E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene39207 | 0.850878 | 1.28E-60 | -1.69E-46 |
| MS.gene055580 | MS.gene39207 | -0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene39207 | 0.802363 | 5.81E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene39207 | 0.876721 | 1.12E-68 | -1.69E-46 |
| MS.gene056043 | MS.gene39207 | -0.809586 | 1.76E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene39207 | 0.842873 | 1.98E-58 | -1.69E-46 |
| MS.gene056091 | MS.gene39207 | 0.889104 | 3.26E-73 | -1.69E-46 |
| MS.gene056215 | MS.gene39207 | 0.808727 | 2.69E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene39207 | 0.80275 | 4.84E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene39207 | 0.848223 | 7.03E-60 | -1.69E-46 |
| MS.gene05689 | MS.gene39207 | 0.821995 | 3.00E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene39207 | 0.801977 | 6.98E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene39207 | 0.829263 | 5.68E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene39207 | 0.824185 | 9.26E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene39207 | 0.807235 | 5.58E-50 | -1.69E-46 |
| MS.gene058908 | MS.gene39207 | 0.809421 | 1.91E-50 | -1.69E-46 |
| MS.gene058911 | MS.gene39207 | 0.814436 | 1.54E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene39207 | 0.81737 | 3.42E-52 | -1.69E-46 |
| MS.gene05953 | MS.gene39207 | 0.816744 | 4.72E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene39207 | 0.843466 | 1.38E-58 | -1.69E-46 |
| MS.gene059935 | MS.gene39207 | 0.81583 | 7.56E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene39207 | 0.90814 | 2.37E-81 | -1.69E-46 |
| MS.gene060429 | MS.gene39207 | 0.867534 | 1.28E-65 | -1.69E-46 |
| MS.gene060586 | MS.gene39207 | 0.808748 | 2.66E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene39207 | 0.803182 | 3.94E-49 | -1.69E-46 |
| MS.gene060917 | MS.gene39207 | 0.834356 | 3.14E-56 | -1.69E-46 |
| MS.gene061266 | MS.gene39207 | 0.811765 | 5.94E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25236 | MS.gene39207 | PPI |
| MS.gene070601 | MS.gene39207 | PPI |
| MS.gene39207 | MS.gene034626 | PPI |
| MS.gene46489 | MS.gene39207 | PPI |
| MS.gene25639 | MS.gene39207 | PPI |
| MS.gene070600 | MS.gene39207 | PPI |
| MS.gene23038 | MS.gene39207 | PPI |
| MS.gene39207 | MS.gene007033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39207.t1 | MTR_1g054310 | 100.000 | 207 | 0 | 0 | 1 | 207 | 33 | 239 | 1.59e-153 | 425 |
| MS.gene39207.t1 | MTR_7g107380 | 97.000 | 200 | 4 | 1 | 8 | 207 | 9 | 206 | 9.02e-143 | 396 |
| MS.gene39207.t1 | MTR_0515s0010 | 89.744 | 78 | 8 | 0 | 44 | 121 | 3 | 80 | 6.14e-48 | 152 |
| MS.gene39207.t1 | MTR_0306s0010 | 89.744 | 78 | 8 | 0 | 44 | 121 | 3 | 80 | 6.14e-48 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39207.t1 | AT2G37270 | 92.105 | 190 | 14 | 1 | 19 | 207 | 18 | 207 | 3.24e-130 | 365 |
| MS.gene39207.t1 | AT2G37270 | 92.105 | 190 | 14 | 1 | 19 | 207 | 18 | 207 | 3.24e-130 | 365 |
| MS.gene39207.t1 | AT3G11940 | 90.000 | 190 | 18 | 1 | 19 | 207 | 18 | 207 | 2.90e-128 | 360 |
| MS.gene39207.t1 | AT3G11940 | 90.000 | 190 | 18 | 1 | 19 | 207 | 18 | 207 | 2.90e-128 | 360 |
| MS.gene39207.t1 | ATCG01240 | 34.532 | 139 | 78 | 5 | 71 | 207 | 22 | 149 | 9.63e-11 | 58.5 |
| MS.gene39207.t1 | ATCG00900 | 34.532 | 139 | 78 | 5 | 71 | 207 | 22 | 149 | 9.63e-11 | 58.5 |
Find 47 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCAACAATGACCTGAAT+TGG | 0.291343 | 1.2:-42975356 | None:intergenic |
| CAGATTACTGATTTGTCTCT+TGG | 0.294356 | 1.2:+42975119 | MS.gene39207:intron |
| GATACTCGAAGAAGCGATTC+AGG | 0.345165 | 1.2:+42975198 | MS.gene39207:CDS |
| AGCTTGACTTCGATCAGGTT+TGG | 0.359219 | 1.2:-42974713 | None:intergenic |
| CTGGAGCTTCGATGACGTTC+AGG | 0.377509 | 1.2:+42974745 | MS.gene39207:CDS |
| CAATGACCTGAATTGGGTTC+TGG | 0.383650 | 1.2:-42975349 | None:intergenic |
| GGATCTGAAACGACCGCAAC+AGG | 0.386815 | 1.2:-42974692 | None:intergenic |
| AGATTACTGATTTGTCTCTT+GGG | 0.391228 | 1.2:+42975120 | MS.gene39207:intron |
| AACCGACCAGAACCCAATTC+AGG | 0.402601 | 1.2:+42975343 | MS.gene39207:CDS |
| GAAAGAAGCTTATGGCTGTT+AGG | 0.402629 | 1.2:+42975285 | MS.gene39207:CDS |
| AATTGTCTTAATATTTCTAA+AGG | 0.421513 | 1.2:-42977435 | None:intergenic |
| CGTGAAGATGCAACTCGTAT+TGG | 0.440985 | 1.2:+42977314 | MS.gene39207:CDS |
| TTGTTGATGCTGTCGTCAAC+AGG | 0.441734 | 1.2:+42975369 | MS.gene39207:CDS |
| GCCATCTATCTTCTAACTAC+TGG | 0.451088 | 1.2:+42977398 | MS.gene39207:CDS |
| GAACTTATTAATGCAGCAAA+AGG | 0.453667 | 1.2:+42977476 | MS.gene39207:CDS |
| GAACAATGGAAAGAAGCTTA+TGG | 0.462961 | 1.2:+42975277 | MS.gene39207:CDS |
| ACCAGTAGTTAGAAGATAGA+TGG | 0.466476 | 1.2:-42977399 | None:intergenic |
| TGAAGAGCTTGACTTCGATC+AGG | 0.472581 | 1.2:-42974718 | None:intergenic |
| TGGAACATATGTTGCATGCT+TGG | 0.475316 | 1.2:-42975162 | None:intergenic |
| GTTGCTAAGGCAAATCGTTA+AGG | 0.480990 | 1.2:+42977658 | MS.gene39207:CDS |
| GCAACTCGTATTGGTTCTGC+TGG | 0.481223 | 1.2:+42977323 | MS.gene39207:CDS |
| CAGCAAAAGGATCATCCAAC+AGG | 0.484289 | 1.2:+42977489 | MS.gene39207:CDS |
| GATTACTGATTTGTCTCTTG+GGG | 0.496398 | 1.2:+42975121 | MS.gene39207:intron |
| AAGTCAAGCTCTTCAACCGC+TGG | 0.503610 | 1.2:+42974726 | MS.gene39207:CDS |
| CATCAACAATGACCTGAATT+GGG | 0.506610 | 1.2:-42975355 | None:intergenic |
| TTGTCTCTTGGGGATTACAT+TGG | 0.513322 | 1.2:+42975131 | MS.gene39207:CDS |
| TGAAATTGAAAGAGTTGCTA+AGG | 0.514135 | 1.2:+42977645 | MS.gene39207:CDS |
| GGCTTGATTCACACGACGAA+GGG | 0.519901 | 1.2:-42977378 | None:intergenic |
| TGCTGGAGTTGTAAGAAGAC+AGG | 0.532743 | 1.2:+42977340 | MS.gene39207:CDS |
| ACATATGTTCCACACACTGC+TGG | 0.537649 | 1.2:+42975173 | MS.gene39207:CDS |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 1.2:-42975233 | None:intergenic |
| ATGATGCACGGGAGGAACAA+TGG | 0.550501 | 1.2:+42975263 | MS.gene39207:CDS |
| TAGGATCATCAAGCATGCTA+TGG | 0.558540 | 1.2:+42975304 | MS.gene39207:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 1.2:-42975234 | None:intergenic |
| AGTTGTAAGAAGACAGGCTG+TGG | 0.574582 | 1.2:+42977346 | MS.gene39207:CDS |
| CTAACTCTCTCATGATGCAC+GGG | 0.577473 | 1.2:+42975252 | MS.gene39207:CDS |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 1.2:+42975225 | MS.gene39207:CDS |
| TTCTTCAATGACATCAGCCA+TGG | 0.596830 | 1.2:-42974669 | None:intergenic |
| GACCTGAATTGGGTTCTGGT+CGG | 0.606242 | 1.2:-42975345 | None:intergenic |
| ACTAACTCTCTCATGATGCA+CGG | 0.612268 | 1.2:+42975251 | MS.gene39207:CDS |
| GAGTATCTACCAGCAGTGTG+TGG | 0.639793 | 1.2:-42975182 | None:intergenic |
| GAACGTCATCGAAGCTCCAG+CGG | 0.655762 | 1.2:-42974742 | None:intergenic |
| TGGCTTGATTCACACGACGA+AGG | 0.656812 | 1.2:-42977379 | None:intergenic |
| ACTCTCTCATGATGCACGGG+AGG | 0.663172 | 1.2:+42975255 | MS.gene39207:CDS |
| GCTTGATTCACACGACGAAG+GGG | 0.665666 | 1.2:-42977377 | None:intergenic |
| TGTCATTGAAGAACCTGTTG+CGG | 0.691240 | 1.2:+42974679 | MS.gene39207:CDS |
| ATACGAGTTGCATCTTCACG+AGG | 0.709806 | 1.2:-42977311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATGAAACAGTAATATT+TGG | - | chr1.2:42977237-42977256 | None:intergenic | 15.0% |
| !! | AATTGAAAATAAAAATGAAC+TGG | - | chr1.2:42976647-42976666 | None:intergenic | 15.0% |
| !! | AGATATTAAAAACAATTAAC+TGG | - | chr1.2:42975602-42975621 | None:intergenic | 15.0% |
| !! | ATTGAAAATAAAAATGAACT+GGG | - | chr1.2:42976646-42976665 | None:intergenic | 15.0% |
| !! | GTTATAATAAATAAACACTT+TGG | + | chr1.2:42975671-42975690 | MS.gene39207:intron | 15.0% |
| !! | TAATATCTTATTAGATATTG+TGG | + | chr1.2:42975614-42975633 | MS.gene39207:intron | 15.0% |
| !!! | AATTGTCTTAATATTTCTAA+AGG | - | chr1.2:42977438-42977457 | None:intergenic | 15.0% |
| !!! | GTTTTTTTAGTTCAATTAAT+TGG | + | chr1.2:42974893-42974912 | MS.gene39207:intron | 15.0% |
| !!! | TAATATTAACTTTATTTAGC+TGG | - | chr1.2:42976433-42976452 | None:intergenic | 15.0% |
| !! | AAAAATGTAGTGATTAATGT+TGG | + | chr1.2:42975076-42975095 | MS.gene39207:intron | 20.0% |
| !! | AATCATAATTTCATTCATTG+AGG | - | chr1.2:42976957-42976976 | None:intergenic | 20.0% |
| !! | AGTAATATTTGATTCATAAC+AGG | - | chr1.2:42977188-42977207 | None:intergenic | 20.0% |
| !! | CATAAATAAACAATTGCAAT+TGG | + | chr1.2:42976007-42976026 | MS.gene39207:intron | 20.0% |
| !! | TAGAAATCAATCAGAAATAT+GGG | + | chr1.2:42976289-42976308 | MS.gene39207:intron | 20.0% |
| !! | TTAGAAATCAATCAGAAATA+TGG | + | chr1.2:42976288-42976307 | MS.gene39207:intron | 20.0% |
| !! | TTCAATTTATAACAAGACTT+TGG | + | chr1.2:42976660-42976679 | MS.gene39207:intron | 20.0% |
| !!! | ATGAATAATTTGTTTCCTAT+TGG | + | chr1.2:42976562-42976581 | MS.gene39207:intron | 20.0% |
| !!! | ATGAATATTTGTTTTCCTAT+TGG | + | chr1.2:42976183-42976202 | MS.gene39207:intron | 20.0% |
| !!! | CTGTTTCATAATTTTGAATT+TGG | + | chr1.2:42977244-42977263 | MS.gene39207:intron | 20.0% |
| !!! | TTCTGTTTTTAGATTTTTTC+TGG | + | chr1.2:42975789-42975808 | MS.gene39207:intron | 20.0% |
| !!! | TTTTATTTTCTGGTTTGATA+TGG | + | chr1.2:42975485-42975504 | MS.gene39207:intron | 20.0% |
| ! | AAACAATTAACTGGAATGAT+AGG | - | chr1.2:42975593-42975612 | None:intergenic | 25.0% |
| ! | ATCAAAACTCATGAAATGTA+AGG | - | chr1.2:42976776-42976795 | None:intergenic | 25.0% |
| ! | ATGAATATTTGTTTCCCTAT+TGG | + | chr1.2:42975833-42975852 | MS.gene39207:intron | 25.0% |
| ! | ATTCTCGTGTATTTATTGTT+TGG | + | chr1.2:42976139-42976158 | MS.gene39207:intron | 25.0% |
| ! | ATTTGATGTTAAACCTACTT+TGG | + | chr1.2:42976812-42976831 | MS.gene39207:intron | 25.0% |
| ! | CACAAGATGAAAAAAATTCA+TGG | - | chr1.2:42977555-42977574 | None:intergenic | 25.0% |
| ! | TAAAACAAATTGCATCATTC+TGG | - | chr1.2:42975867-42975886 | None:intergenic | 25.0% |
| ! | TAGTTATTGTGATTGTGATT+AGG | + | chr1.2:42975763-42975782 | MS.gene39207:intron | 25.0% |
| ! | TGATATGTAAATAACAACCT+CGG | - | chr1.2:42977072-42977091 | None:intergenic | 25.0% |
| ! | TGTTTAACTGTTGCAATTTA+TGG | + | chr1.2:42977112-42977131 | MS.gene39207:intron | 25.0% |
| ! | TTCTGTGATATCAGATTATT+TGG | + | chr1.2:42974969-42974988 | MS.gene39207:intron | 25.0% |
| !!! | AATTTGGATCTGATTTGTTT+TGG | + | chr1.2:42977260-42977279 | MS.gene39207:intron | 25.0% |
| !!! | AGATTTTTTCTGGTTTGATA+TGG | + | chr1.2:42975799-42975818 | MS.gene39207:intron | 25.0% |
| !!! | ATGAATTTTTGTTTCCCTAT+TGG | + | chr1.2:42975519-42975538 | MS.gene39207:intron | 25.0% |
| !!! | GATGTTTTTATGTACTTGTT+TGG | + | chr1.2:42976510-42976529 | MS.gene39207:intron | 25.0% |
| !!! | GGATATTTTTTTTGTGTTTC+TGG | + | chr1.2:42974914-42974933 | MS.gene39207:intron | 25.0% |
| AATACAAAATGCCATCATTC+TGG | - | chr1.2:42976217-42976236 | None:intergenic | 30.0% | |
| AATACAATTTGCCATCATTC+TGG | - | chr1.2:42976596-42976615 | None:intergenic | 30.0% | |
| ATTTCTATGTCTTTGTCTGT+TGG | + | chr1.2:42975701-42975720 | MS.gene39207:intron | 30.0% | |
| CAACCACTTACAGTAATATT+TGG | - | chr1.2:42977016-42977035 | None:intergenic | 30.0% | |
| CTATGCTTAAAAACCAAAGT+AGG | - | chr1.2:42976828-42976847 | None:intergenic | 30.0% | |
| GAACTTATTAATGCAGCAAA+AGG | + | chr1.2:42977476-42977495 | MS.gene39207:CDS | 30.0% | |
| GACACATAAAAGTTCATTAC+TGG | - | chr1.2:42975917-42975936 | None:intergenic | 30.0% | |
| TAAAAATGAACTGGGAGATA+AGG | - | chr1.2:42976638-42976657 | None:intergenic | 30.0% | |
| TGAAATTGAAAGAGTTGCTA+AGG | + | chr1.2:42977645-42977664 | MS.gene39207:CDS | 30.0% | |
| TTACTGGAATGATATGAGAA+TGG | - | chr1.2:42975901-42975920 | None:intergenic | 30.0% | |
| TTAGATACAAACAAATGACC+TGG | - | chr1.2:42976268-42976287 | None:intergenic | 30.0% | |
| ! | ACAGTTAAACACAACACTTT+TGG | - | chr1.2:42977103-42977122 | None:intergenic | 30.0% |
| ! | ATGATTGGTTATTTCCCTAT+TGG | + | chr1.2:42976880-42976899 | MS.gene39207:intron | 30.0% |
| ! | ATTTGTAAAAGCATACCTGT+TGG | - | chr1.2:42977507-42977526 | None:intergenic | 30.0% |
| ! | CAGTTAAACACAACACTTTT+GGG | - | chr1.2:42977102-42977121 | None:intergenic | 30.0% |
| ! | TATGAATCGTTGATTGTTGA+TGG | + | chr1.2:42975392-42975411 | MS.gene39207:intron | 30.0% |
| !! | AGATTACTGATTTGTCTCTT+GGG | + | chr1.2:42975120-42975139 | MS.gene39207:intron | 30.0% |
| !! | ATTTATTGTTTGGCTTGGAA+TGG | + | chr1.2:42976149-42976168 | MS.gene39207:intron | 30.0% |
| !!! | TATTTTCTGGTTTGATATGG+AGG | + | chr1.2:42975488-42975507 | MS.gene39207:intron | 30.0% |
| AACAAATGACCTGGAATGTT+AGG | - | chr1.2:42976259-42976278 | None:intergenic | 35.0% | |
| ACCAGTAGTTAGAAGATAGA+TGG | - | chr1.2:42977402-42977421 | None:intergenic | 35.0% | |
| AGAACAGTGACAATTGTAGT+TGG | + | chr1.2:42976846-42976865 | MS.gene39207:intron | 35.0% | |
| ATACATAAATGCCATCATCC+AGG | - | chr1.2:42976914-42976933 | None:intergenic | 35.0% | |
| ATGACTAGTAATGACTGTTG+AGG | + | chr1.2:42975944-42975963 | MS.gene39207:intron | 35.0% | |
| CATCAACAATGACCTGAATT+GGG | - | chr1.2:42975358-42975377 | None:intergenic | 35.0% | |
| CGTGTATTTATTGTTTGGCT+TGG | + | chr1.2:42976144-42976163 | MS.gene39207:intron | 35.0% | |
| GAACAATGGAAAGAAGCTTA+TGG | + | chr1.2:42975277-42975296 | MS.gene39207:CDS | 35.0% | |
| GACATGTCAAGAAAAGCAAA+AGG | - | chr1.2:42977166-42977185 | None:intergenic | 35.0% | |
| GCACCAAATATTACTGTAAG+TGG | + | chr1.2:42977010-42977029 | MS.gene39207:intron | 35.0% | |
| TAACTGGAATGATAGGAGAA+TGG | - | chr1.2:42975586-42975605 | None:intergenic | 35.0% | |
| TTGGAGAATGACATGATGAT+TGG | + | chr1.2:42976865-42976884 | MS.gene39207:intron | 35.0% | |
| !! | CAGATTACTGATTTGTCTCT+TGG | + | chr1.2:42975119-42975138 | MS.gene39207:intron | 35.0% |
| !! | GATTACTGATTTGTCTCTTG+GGG | + | chr1.2:42975121-42975140 | MS.gene39207:intron | 35.0% |
| !! | GTGTTTGTGTACTTTTTGTC+TGG | + | chr1.2:42976068-42976087 | MS.gene39207:intron | 35.0% |
| !! | TGTGTACTTTTTGTCTGGTT+TGG | + | chr1.2:42976073-42976092 | MS.gene39207:intron | 35.0% |
| !! | TTCTGGTTTGATATGGAGAA+TGG | + | chr1.2:42975806-42975825 | MS.gene39207:intron | 35.0% |
| !!! | ACTTTTTGTCTGGTTTGGAA+TGG | + | chr1.2:42976078-42976097 | MS.gene39207:intron | 35.0% |
| AAATGAACTGGGAGATAAGG+TGG | - | chr1.2:42976635-42976654 | None:intergenic | 40.0% | |
| ACAATTTGCCATCATTCTGG+CGG | - | chr1.2:42976593-42976612 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | + | chr1.2:42975251-42975270 | MS.gene39207:CDS | 40.0% | |
| ACTCTTGCAGTCAAACCAAT+AGG | - | chr1.2:42975537-42975556 | None:intergenic | 40.0% | |
| ATCCAGGCAATCAATCCAAT+AGG | - | chr1.2:42976898-42976917 | None:intergenic | 40.0% | |
| ATTCTGGCAGTCAAACCAAT+AGG | - | chr1.2:42975851-42975870 | None:intergenic | 40.0% | |
| CCAACAACATCTTCTGCAAA+GGG | - | chr1.2:42976732-42976751 | None:intergenic | 40.0% | |
| CTCTTGCAGTCAAACCAATA+GGG | - | chr1.2:42975536-42975555 | None:intergenic | 40.0% | |
| GAAAGAAGCTTATGGCTGTT+AGG | + | chr1.2:42975285-42975304 | MS.gene39207:CDS | 40.0% | |
| GCATCAACAATGACCTGAAT+TGG | - | chr1.2:42975359-42975378 | None:intergenic | 40.0% | |
| GCCATCTATCTTCTAACTAC+TGG | + | chr1.2:42977398-42977417 | MS.gene39207:CDS | 40.0% | |
| TAGGATCATCAAGCATGCTA+TGG | + | chr1.2:42975304-42975323 | MS.gene39207:CDS | 40.0% | |
| TATGTACTTGTTTGGCACTC+TGG | + | chr1.2:42976518-42976537 | MS.gene39207:intron | 40.0% | |
| TCCAACAACATCTTCTGCAA+AGG | - | chr1.2:42976733-42976752 | None:intergenic | 40.0% | |
| TCCAGGCAATCAATCCAATA+GGG | - | chr1.2:42976897-42976916 | None:intergenic | 40.0% | |
| TGGAACATATGTTGCATGCT+TGG | - | chr1.2:42975165-42975184 | None:intergenic | 40.0% | |
| TGTCATTGAAGAACCTGTTG+CGG | + | chr1.2:42974679-42974698 | MS.gene39207:CDS | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | chr1.2:42975236-42975255 | None:intergenic | 40.0% | |
| TTCTGGCAGTCAAACCAATA+GGG | - | chr1.2:42975850-42975869 | None:intergenic | 40.0% | |
| TTGTCTCTTGGGGATTACAT+TGG | + | chr1.2:42975131-42975150 | MS.gene39207:CDS | 40.0% | |
| !! | CGCTTGTGTCATTTGTATAG+TGG | + | chr1.2:42977287-42977306 | MS.gene39207:intron | 40.0% |
| !! | TATTGTTTGGCTTGGAATGG+AGG | + | chr1.2:42976152-42976171 | MS.gene39207:intron | 40.0% |
| !! | TTCTGGTTTGATATGGAGGA+TGG | + | chr1.2:42975492-42975511 | MS.gene39207:intron | 40.0% |
| !!! | TTTTGTCTGGTTTGGAATGG+TGG | + | chr1.2:42976081-42976100 | MS.gene39207:intron | 40.0% |
| ACATATGTTCCACACACTGC+TGG | + | chr1.2:42975173-42975192 | MS.gene39207:CDS | 45.0% | |
| AGCTTGACTTCGATCAGGTT+TGG | - | chr1.2:42974716-42974735 | None:intergenic | 45.0% | |
| AGTTGTAAGAAGACAGGCTG+TGG | + | chr1.2:42977346-42977365 | MS.gene39207:CDS | 45.0% | |
| ATACGAGTTGCATCTTCACG+AGG | - | chr1.2:42977314-42977333 | None:intergenic | 45.0% | |
| ATGGAAGACTGCATGTGTAC+AGG | - | chr1.2:42977536-42977555 | None:intergenic | 45.0% | |
| ATTCTGGCGGTCAAACCAAT+AGG | - | chr1.2:42976580-42976599 | None:intergenic | 45.0% | |
| CAATGACCTGAATTGGGTTC+TGG | - | chr1.2:42975352-42975371 | None:intergenic | 45.0% | |
| CAGCAAAAGGATCATCCAAC+AGG | + | chr1.2:42977489-42977508 | MS.gene39207:CDS | 45.0% | |
| CCCTTTGCAGAAGATGTTGT+TGG | + | chr1.2:42976729-42976748 | MS.gene39207:intron | 45.0% | |
| CGGAAAATACACAGCTAGCA+TGG | - | chr1.2:42977052-42977071 | None:intergenic | 45.0% | |
| CGTGAAGATGCAACTCGTAT+TGG | + | chr1.2:42977314-42977333 | MS.gene39207:CDS | 45.0% | |
| CTAACTCTCTCATGATGCAC+GGG | + | chr1.2:42975252-42975271 | MS.gene39207:CDS | 45.0% | |
| GACCATTCTCCTAACATTCC+AGG | + | chr1.2:42976247-42976266 | MS.gene39207:intron | 45.0% | |
| GACCTGGAATGTTAGGAGAA+TGG | - | chr1.2:42976252-42976271 | None:intergenic | 45.0% | |
| GATACTCGAAGAAGCGATTC+AGG | + | chr1.2:42975198-42975217 | MS.gene39207:CDS | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | chr1.2:42975237-42975256 | None:intergenic | 45.0% | |
| TCCCTATTGGATTGATTGCC+TGG | + | chr1.2:42976893-42976912 | MS.gene39207:intron | 45.0% | |
| TGAAGAGCTTGACTTCGATC+AGG | - | chr1.2:42974721-42974740 | None:intergenic | 45.0% | |
| TGCTGGAGTTGTAAGAAGAC+AGG | + | chr1.2:42977340-42977359 | MS.gene39207:CDS | 45.0% | |
| TGGATTGATTGCCTGGATGA+TGG | + | chr1.2:42976900-42976919 | MS.gene39207:intron | 45.0% | |
| TGGTTTGACTGCCAGAATGA+TGG | + | chr1.2:42975853-42975872 | MS.gene39207:intron | 45.0% | |
| TTGTTGATGCTGTCGTCAAC+AGG | + | chr1.2:42975369-42975388 | MS.gene39207:CDS | 45.0% | |
| ! | TGCTAGCTGTGTATTTTCCG+AGG | + | chr1.2:42977052-42977071 | MS.gene39207:intron | 45.0% |
| !! | CTCTGGCTTGATTTGTAGGA+TGG | + | chr1.2:42976535-42976554 | MS.gene39207:intron | 45.0% |
| !!! | TTTTTTTTACATAAATTAAT+TGG | + | chr1.2:42975029-42975048 | MS.gene39207:intron | 5.0% |
| !!! | TTTTTTTTTATTTTATTTTC+TGG | + | chr1.2:42975475-42975494 | MS.gene39207:intron | 5.0% |
| AACCGACCAGAACCCAATTC+AGG | + | chr1.2:42975343-42975362 | MS.gene39207:CDS | 50.0% | |
| AAGTCAAGCTCTTCAACCGC+TGG | + | chr1.2:42974726-42974745 | MS.gene39207:CDS | 50.0% | |
| ATGATGCACGGGAGGAACAA+TGG | + | chr1.2:42975263-42975282 | MS.gene39207:CDS | 50.0% | |
| CTCAGTGTCCCATTGTTGAG+AGG | + | chr1.2:42975225-42975244 | MS.gene39207:CDS | 50.0% | |
| GAACTGGGAGATAAGGTGGA+TGG | - | chr1.2:42976631-42976650 | None:intergenic | 50.0% | |
| GAGTATCTACCAGCAGTGTG+TGG | - | chr1.2:42975185-42975204 | None:intergenic | 50.0% | |
| GCTTGATTCACACGACGAAG+GGG | - | chr1.2:42977380-42977399 | None:intergenic | 50.0% | |
| GGCTTGATTCACACGACGAA+GGG | - | chr1.2:42977381-42977400 | None:intergenic | 50.0% | |
| TGGCTTGATTCACACGACGA+AGG | - | chr1.2:42977382-42977401 | None:intergenic | 50.0% | |
| TGGTTTGACCGCCAGAATGA+TGG | + | chr1.2:42976582-42976601 | MS.gene39207:intron | 50.0% | |
| ! | GACCTGAATTGGGTTCTGGT+CGG | - | chr1.2:42975348-42975367 | None:intergenic | 50.0% |
| !! | GCAACTCGTATTGGTTCTGC+TGG | + | chr1.2:42977323-42977342 | MS.gene39207:CDS | 50.0% |
| !! | GGCACTCTGGCTTGATTTGT+AGG | + | chr1.2:42976531-42976550 | MS.gene39207:intron | 50.0% |
| !! | GTTTGGCTTGGAATGGAGGA+TGG | + | chr1.2:42976156-42976175 | MS.gene39207:intron | 50.0% |
| ACTCTCTCATGATGCACGGG+AGG | + | chr1.2:42975255-42975274 | MS.gene39207:CDS | 55.0% | |
| CTGGAGCTTCGATGACGTTC+AGG | + | chr1.2:42974745-42974764 | MS.gene39207:CDS | 55.0% | |
| GAACGTCATCGAAGCTCCAG+CGG | - | chr1.2:42974745-42974764 | None:intergenic | 55.0% | |
| ! | GGATCTGAAACGACCGCAAC+AGG | - | chr1.2:42974695-42974714 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 42974671 | 42977678 | 42974671 | ID=MS.gene39207 |
| chr1.2 | mRNA | 42974671 | 42977678 | 42974671 | ID=MS.gene39207.t1;Parent=MS.gene39207 |
| chr1.2 | exon | 42974671 | 42974766 | 42974671 | ID=MS.gene39207.t1.exon1;Parent=MS.gene39207.t1 |
| chr1.2 | CDS | 42974671 | 42974766 | 42974671 | ID=cds.MS.gene39207.t1;Parent=MS.gene39207.t1 |
| chr1.2 | exon | 42975122 | 42975390 | 42975122 | ID=MS.gene39207.t1.exon2;Parent=MS.gene39207.t1 |
| chr1.2 | CDS | 42975122 | 42975390 | 42975122 | ID=cds.MS.gene39207.t1;Parent=MS.gene39207.t1 |
| chr1.2 | exon | 42977307 | 42977510 | 42977307 | ID=MS.gene39207.t1.exon3;Parent=MS.gene39207.t1 |
| chr1.2 | CDS | 42977307 | 42977510 | 42977307 | ID=cds.MS.gene39207.t1;Parent=MS.gene39207.t1 |
| chr1.2 | exon | 42977624 | 42977678 | 42977624 | ID=MS.gene39207.t1.exon4;Parent=MS.gene39207.t1 |
| chr1.2 | CDS | 42977624 | 42977678 | 42977624 | ID=cds.MS.gene39207.t1;Parent=MS.gene39207.t1 |
| Gene Sequence |
| Protein sequence |
