AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46489

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46489.t1 MTR_1g054310 98.326 239 4 0 1 239 1 239 2.15e-176 484
MS.gene46489.t1 MTR_7g107380 97.000 200 4 1 40 239 9 206 1.01e-141 395
MS.gene46489.t1 MTR_0515s0010 89.744 78 8 0 76 153 3 80 6.95e-47 150
MS.gene46489.t1 MTR_0306s0010 89.744 78 8 0 76 153 3 80 6.95e-47 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46489.t1 AT2G37270 92.105 190 14 1 51 239 18 207 4.09e-129 363
MS.gene46489.t1 AT2G37270 92.105 190 14 1 51 239 18 207 4.09e-129 363
MS.gene46489.t1 AT3G11940 90.000 190 18 1 51 239 18 207 2.91e-127 358
MS.gene46489.t1 AT3G11940 90.000 190 18 1 51 239 18 207 2.91e-127 358

Find 57 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCAATGCACCAAAATT+AGG 0.162365 1.1:+42169060 MS.gene46489:CDS
GCATCAACAATGACCTGAAT+TGG 0.291343 1.1:-42170021 None:intergenic
CAGATTACTGATTTGTCTCT+TGG 0.294356 1.1:+42169784 MS.gene46489:intron
GAACCAATGCACCAAAATTA+GGG 0.331625 1.1:+42169061 MS.gene46489:CDS
GATACTCGAAGAAGCGATTC+AGG 0.345165 1.1:+42169863 MS.gene46489:CDS
AGCTTGACTTCGATCAGGTT+TGG 0.359219 1.1:-42169279 None:intergenic
CATTCTCAGCAGCTTCAGTT+TGG 0.372538 1.1:+42169107 MS.gene46489:CDS
CTGGAGCTTCGATGACGTTC+AGG 0.377509 1.1:+42169311 MS.gene46489:CDS
CAATGACCTGAATTGGGTTC+TGG 0.383650 1.1:-42170014 None:intergenic
TGGAACATATGTTGCATGTT+TGG 0.388336 1.1:-42169827 None:intergenic
AGATTACTGATTTGTCTCTT+GGG 0.391228 1.1:+42169785 MS.gene46489:intron
GGATCTGAAACGACTGCAAC+AGG 0.391313 1.1:-42169258 None:intergenic
AACCGACCAGAACCCAATTC+AGG 0.402601 1.1:+42170008 MS.gene46489:CDS
GAAAGAAGCTTATGGCTGTT+AGG 0.402629 1.1:+42169950 MS.gene46489:CDS
CAAACTGAAGCTGCTGAGAA+TGG 0.431599 1.1:-42169106 None:intergenic
TTGTTGATGCTGTCGTCAAC+AGG 0.441734 1.1:+42170034 MS.gene46489:CDS
GCCATCTATCTTCTAACTAC+TGG 0.451088 1.1:+42171914 MS.gene46489:CDS
GAACTTATTAATGCAGCAAA+AGG 0.453667 1.1:+42171992 MS.gene46489:CDS
GAACAATGGAAAGAAGCTTA+TGG 0.462961 1.1:+42169942 MS.gene46489:CDS
AATTGTCTTAATATTTCTAA+AGG 0.465228 1.1:-42171951 None:intergenic
CGTGAAGATGCTACTCGTAT+TGG 0.468388 1.1:+42171830 MS.gene46489:CDS
TGAAGAGCTTGACTTCGATC+AGG 0.472581 1.1:-42169284 None:intergenic
GTTGCTAAGGCAAATCGTTA+AGG 0.480990 1.1:+42172178 MS.gene46489:CDS
CAGCAAAAGGATCATCCAAC+AGG 0.484289 1.1:+42172005 MS.gene46489:CDS
TATGTGATAAACCCTAATTT+TGG 0.490722 1.1:-42169072 None:intergenic
GCTACTCGTATTGGTTCTGC+TGG 0.495376 1.1:+42171839 MS.gene46489:CDS
GATTACTGATTTGTCTCTTG+GGG 0.496398 1.1:+42169786 MS.gene46489:intron
AAGTCAAGCTCTTCAACCGC+TGG 0.503610 1.1:+42169292 MS.gene46489:CDS
CATCAACAATGACCTGAATT+GGG 0.506610 1.1:-42170020 None:intergenic
ACCAGTAGTTAGAAGATAGA+TGG 0.507365 1.1:-42171915 None:intergenic
TTGTCTCTTGGGGATTACAT+TGG 0.513322 1.1:+42169796 MS.gene46489:CDS
TGAAATTGAAAGAGTTGCTA+AGG 0.514135 1.1:+42172165 MS.gene46489:CDS
GGCTTGATTCACACGACGAA+GGG 0.519901 1.1:-42171894 None:intergenic
TGCTGGAGTTGTAAGAAGAC+AGG 0.532743 1.1:+42171856 MS.gene46489:CDS
AACCGTGATTGAGGTGGATG+CGG 0.535990 1.1:-42169133 None:intergenic
ACATATGTTCCACACACTGC+TGG 0.537649 1.1:+42169838 MS.gene46489:CDS
TTAGTGAGCCTCTCAACAAT+GGG 0.543323 1.1:-42169898 None:intergenic
TAGGATCATCAAGCATGCTA+TGG 0.558540 1.1:+42169969 MS.gene46489:CDS
CTAACTCTCTCATGATGCAT+GGG 0.561374 1.1:+42169917 MS.gene46489:CDS
GTTAGTGAGCCTCTCAACAA+TGG 0.562680 1.1:-42169899 None:intergenic
ACTAACTCTCTCATGATGCA+TGG 0.563337 1.1:+42169916 MS.gene46489:CDS
ATGATGCATGGGAGGAACAA+TGG 0.566550 1.1:+42169928 MS.gene46489:CDS
AAATGAACGAACCGTGATTG+AGG 0.567407 1.1:-42169142 None:intergenic
AGTTGTAAGAAGACAGGCTG+TGG 0.574582 1.1:+42171862 MS.gene46489:CDS
TGCCGCATCCACCTCAATCA+CGG 0.580034 1.1:+42169131 MS.gene46489:CDS
CTCAGTGTCCCATTGTTGAG+AGG 0.591866 1.1:+42169890 MS.gene46489:CDS
TTCTTCAATGACATCAGCCA+TGG 0.596830 1.1:-42169235 None:intergenic
GACCTGAATTGGGTTCTGGT+CGG 0.606242 1.1:-42170010 None:intergenic
GAAGCTGCTGAGAATGGAGA+AGG 0.631702 1.1:-42169100 None:intergenic
GAGTATCTACCAGCAGTGTG+TGG 0.639793 1.1:-42169847 None:intergenic
TGAACGAACCGTGATTGAGG+TGG 0.645612 1.1:-42169139 None:intergenic
ACTCTCTCATGATGCATGGG+AGG 0.648954 1.1:+42169920 MS.gene46489:CDS
GAACGTCATCGAAGCTCCAG+CGG 0.655762 1.1:-42169308 None:intergenic
TGCTGAGAATGGAGAAGGTG+TGG 0.656611 1.1:-42169095 None:intergenic
TGGCTTGATTCACACGACGA+AGG 0.656812 1.1:-42171895 None:intergenic
GCTTGATTCACACGACGAAG+GGG 0.665666 1.1:-42171893 None:intergenic
ATACGAGTAGCATCTTCACG+AGG 0.785565 1.1:-42171827 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAATTCTATTTATTA+AGG - chr1.1:42171534-42171553 None:intergenic 10.0%
!! AATTTAAACAAAAAATTAAC+TGG - chr1.1:42170267-42170286 None:intergenic 10.0%
!! TTAGAAATTAATAAGAAATA+TGG + chr1.1:42170968-42170987 MS.gene46489:intron 10.0%
!!! TTCTTTTTTTAAATTTTTTC+TGG + chr1.1:42170512-42170531 MS.gene46489:intron 10.0%
!! ATATTAAAAAAACAATAAGC+TGG - chr1.1:42170640-42170659 None:intergenic 15.0%
!! TAAATTCTAATTTGACATAT+TGG + chr1.1:42170281-42170300 MS.gene46489:intron 15.0%
!!! AATTGTCTTAATATTTCTAA+AGG - chr1.1:42171954-42171973 None:intergenic 15.0%
!!! TAATATTTCTATGTTTTTGA+TGG + chr1.1:42170418-42170437 MS.gene46489:intron 15.0%
!!! TTTTAATTAGTTTCATGTTT+AGG + chr1.1:42169363-42169382 MS.gene46489:intron 15.0%
!! AAAAAATTAACTGGAATGTT+AGG - chr1.1:42170258-42170277 None:intergenic 20.0%
!! AAAAATGTAGTGATTAATGT+TGG + chr1.1:42169741-42169760 MS.gene46489:intron 20.0%
!! AAAAGGTAGTAGTATATTAA+TGG - chr1.1:42171753-42171772 None:intergenic 20.0%
!! AATTGAAAATAAAAATGAGC+TGG - chr1.1:42171268-42171287 None:intergenic 20.0%
!! ATTGAAAATAAAAATGAGCT+GGG - chr1.1:42171267-42171286 None:intergenic 20.0%
!! CAAGAGATGAAAAAAAATTA+TGG - chr1.1:42172071-42172090 None:intergenic 20.0%
!! GTATTTGAAAGGAAAAAAAT+TGG - chr1.1:42171112-42171131 None:intergenic 20.0%
!! GTTATCATAAATAAACACTT+TGG + chr1.1:42170392-42170411 MS.gene46489:intron 20.0%
!! TCATAAGTCAAAGAATTAAA+AGG - chr1.1:42172103-42172122 None:intergenic 20.0%
!!! AAATTTTTTCTGGTTTGATA+TGG + chr1.1:42170522-42170541 MS.gene46489:intron 20.0%
!!! ATGAATAATTTGTTTCCTAT+TGG + chr1.1:42171186-42171205 MS.gene46489:intron 20.0%
!!! ATGAATATTTGTTTTCCTAT+TGG + chr1.1:42170852-42170871 MS.gene46489:intron 20.0%
!!! TTTGTTGAAATTTTTGTAGT+TGG + chr1.1:42169452-42169471 MS.gene46489:intron 20.0%
!!! TTTTATTTTCTGGTTTGATA+TGG + chr1.1:42170150-42170169 MS.gene46489:intron 20.0%
!!! TTTTGTTATTCCAGATTATT+TGG + chr1.1:42169579-42169598 MS.gene46489:intron 20.0%
! AAAAAAAGAACAACCTAATC+AGG - chr1.1:42170502-42170521 None:intergenic 25.0%
! ATCAGATCCAAATTCAAAAA+AGG - chr1.1:42171770-42171789 None:intergenic 25.0%
! ATGAATATTTGTTTCCCTAT+TGG + chr1.1:42170556-42170575 MS.gene46489:intron 25.0%
! ATTTGTGTATTACTTGTGAT+TGG + chr1.1:42171592-42171611 MS.gene46489:intron 25.0%
! CATTACTAACGAAACATAAA+GGG - chr1.1:42170323-42170342 None:intergenic 25.0%
! CTTTACTAATGAAACATATG+AGG - chr1.1:42170708-42170727 None:intergenic 25.0%
! TAAAACAAATTGCATCATTC+TGG - chr1.1:42170590-42170609 None:intergenic 25.0%
! TAATTATTGTGATCCTGATT+AGG + chr1.1:42170486-42170505 MS.gene46489:intron 25.0%
! TCATTACTAACGAAACATAA+AGG - chr1.1:42170324-42170343 None:intergenic 25.0%
! TCTCTTATAAGTAACACAAA+AGG - chr1.1:42171019-42171038 None:intergenic 25.0%
! TTCATGAGTTATGATTATCT+TGG + chr1.1:42171358-42171377 MS.gene46489:intron 25.0%
! TTCATTAGTAAAGACTGTTA+AGG + chr1.1:42170715-42170734 MS.gene46489:intron 25.0%
!! TATGTGATAAACCCTAATTT+TGG - chr1.1:42169075-42169094 None:intergenic 25.0%
!!! ACTACTACCTTTTTTGAATT+TGG + chr1.1:42171760-42171779 MS.gene46489:intron 25.0%
!!! ATGAATTTTTGTTTCCCTAT+TGG + chr1.1:42170184-42170203 MS.gene46489:intron 25.0%
AATACAAATTGCCATCATTC+TGG - chr1.1:42170886-42170905 None:intergenic 30.0%
AATGGCATATTTAAGCAACA+AGG - chr1.1:42171624-42171643 None:intergenic 30.0%
ACAAGAAACACCAAATAATC+TGG - chr1.1:42169592-42169611 None:intergenic 30.0%
ATATTAACCCTTTAGACGAT+GGG - chr1.1:42171672-42171691 None:intergenic 30.0%
ATGATTCACACGTATTTGAA+AGG - chr1.1:42171123-42171142 None:intergenic 30.0%
GAAACTGCGATAATAAGAAT+CGG + chr1.1:42171423-42171442 MS.gene46489:intron 30.0%
GAACTTATTAATGCAGCAAA+AGG + chr1.1:42171992-42172011 MS.gene46489:CDS 30.0%
GTTAATATGGACTTGCAATT+AGG + chr1.1:42171684-42171703 MS.gene46489:intron 30.0%
TAGTGTTATGATTTACTTGC+TGG + chr1.1:42171142-42171161 MS.gene46489:intron 30.0%
TGAAATTGAAAGAGTTGCTA+AGG + chr1.1:42172165-42172184 MS.gene46489:CDS 30.0%
TTATTTACCCATCGTCTAAA+GGG + chr1.1:42171662-42171681 MS.gene46489:intron 30.0%
TTCGTTAGTAATGATTGTTG+AGG + chr1.1:42170330-42170349 MS.gene46489:intron 30.0%
! ATGATTGGTTATTTCCCTAT+TGG + chr1.1:42171457-42171476 MS.gene46489:intron 30.0%
! ATTTGAAAAAGCATACCTGT+TGG - chr1.1:42172023-42172042 None:intergenic 30.0%
! TATGAATCGTTGATTGTTGA+TGG + chr1.1:42170057-42170076 MS.gene46489:intron 30.0%
!! AGATTACTGATTTGTCTCTT+GGG + chr1.1:42169785-42169804 MS.gene46489:intron 30.0%
!!! TATTTTCTGGTTTGATATGG+AGG + chr1.1:42170153-42170172 MS.gene46489:intron 30.0%
AAAAAATGGCCTAGAATGTC+AGG - chr1.1:42170928-42170947 None:intergenic 35.0%
AAACGAACAATGAGAAACAG+TGG - chr1.1:42169205-42169224 None:intergenic 35.0%
AAGCTGGAATGATATGAGAA+TGG - chr1.1:42170624-42170643 None:intergenic 35.0%
AATGAGCTGGGAAATAAGAA+TGG - chr1.1:42171255-42171274 None:intergenic 35.0%
ACCAGTAGTTAGAAGATAGA+TGG - chr1.1:42171918-42171937 None:intergenic 35.0%
AGAAACAGTGGATACAGAAA+AGG - chr1.1:42169193-42169212 None:intergenic 35.0%
ATACATAAGTGCCATCATCA+AGG - chr1.1:42171491-42171510 None:intergenic 35.0%
ATCAAGGCAATCAAACCAAT+AGG - chr1.1:42171475-42171494 None:intergenic 35.0%
ATGCCATTGTTTACTTTCTG+TGG + chr1.1:42171636-42171655 MS.gene46489:intron 35.0%
CAACCACAGAAAGTAAACAA+TGG - chr1.1:42171642-42171661 None:intergenic 35.0%
CAAGTAATACACAAATGACG+AGG - chr1.1:42171588-42171607 None:intergenic 35.0%
CATATTAACCCTTTAGACGA+TGG - chr1.1:42171673-42171692 None:intergenic 35.0%
CATCAACAATGACCTGAATT+GGG - chr1.1:42170023-42170042 None:intergenic 35.0%
CATCGTCTAAAGGGTTAATA+TGG + chr1.1:42171671-42171690 MS.gene46489:intron 35.0%
GAACAATGGAAAGAAGCTTA+TGG + chr1.1:42169942-42169961 MS.gene46489:CDS 35.0%
GAACCAATGCACCAAAATTA+GGG + chr1.1:42169061-42169080 MS.gene46489:CDS 35.0%
GTTATTTACCCATCGTCTAA+AGG + chr1.1:42171661-42171680 MS.gene46489:intron 35.0%
TAACTGGAATGTTAGGAGAA+TGG - chr1.1:42170251-42170270 None:intergenic 35.0%
TCAAGGCAATCAAACCAATA+GGG - chr1.1:42171474-42171493 None:intergenic 35.0%
TGAACCAATGCACCAAAATT+AGG + chr1.1:42169060-42169079 MS.gene46489:CDS 35.0%
TGGAACATATGTTGCATGTT+TGG - chr1.1:42169830-42169849 None:intergenic 35.0%
TGTTTGTGTATTTGTCGTGA+TGG + chr1.1:42170808-42170827 MS.gene46489:intron 35.0%
!! AAACCCTAATTTTGGTGCAT+TGG - chr1.1:42169067-42169086 None:intergenic 35.0%
!! CAGATTACTGATTTGTCTCT+TGG + chr1.1:42169784-42169803 MS.gene46489:intron 35.0%
!! GATTACTGATTTGTCTCTTG+GGG + chr1.1:42169786-42169805 MS.gene46489:intron 35.0%
!! TCTATGTTTTTGATGGCTGT+AGG + chr1.1:42170425-42170444 MS.gene46489:intron 35.0%
!! TTCTGGTTTGATATGGTGAA+TGG + chr1.1:42170529-42170548 MS.gene46489:intron 35.0%
AAATGAACGAACCGTGATTG+AGG - chr1.1:42169145-42169164 None:intergenic 40.0%
AATACAAGCTGCCATCATTC+TGG - chr1.1:42171220-42171239 None:intergenic 40.0%
ACTAACTCTCTCATGATGCA+TGG + chr1.1:42169916-42169935 MS.gene46489:CDS 40.0%
ACTCTTGCAGTCAAACCAAT+AGG - chr1.1:42170202-42170221 None:intergenic 40.0%
ATTCTGGCAGTCAAACCAAT+AGG - chr1.1:42170574-42170593 None:intergenic 40.0%
CATACACAAGACAGATCTCA+CGG - chr1.1:42170466-42170485 None:intergenic 40.0%
CGAAGATTCGAAGAATGTGA+AGG - chr1.1:42169168-42169187 None:intergenic 40.0%
CTAACTCTCTCATGATGCAT+GGG + chr1.1:42169917-42169936 MS.gene46489:CDS 40.0%
CTCTTGCAGTCAAACCAATA+GGG - chr1.1:42170201-42170220 None:intergenic 40.0%
GAAAGAAGCTTATGGCTGTT+AGG + chr1.1:42169950-42169969 MS.gene46489:CDS 40.0%
GCATCAACAATGACCTGAAT+TGG - chr1.1:42170024-42170043 None:intergenic 40.0%
GCCATCTATCTTCTAACTAC+TGG + chr1.1:42171914-42171933 MS.gene46489:CDS 40.0%
TAGGATCATCAAGCATGCTA+TGG + chr1.1:42169969-42169988 MS.gene46489:CDS 40.0%
TCGGAGAATGACATGATGAT+TGG + chr1.1:42171442-42171461 MS.gene46489:intron 40.0%
TGATGGCTTAGAATGGAGAA+TGG + chr1.1:42170825-42170844 MS.gene46489:intron 40.0%
TGGTTTGATTGCCTTGATGA+TGG + chr1.1:42171477-42171496 MS.gene46489:intron 40.0%
TTAGTGAGCCTCTCAACAAT+GGG - chr1.1:42169901-42169920 None:intergenic 40.0%
TTCTGGCAGTCAAACCAATA+GGG - chr1.1:42170573-42170592 None:intergenic 40.0%
TTCTTCAATGACATCAGCCA+TGG - chr1.1:42169238-42169257 None:intergenic 40.0%
TTGTCTCTTGGGGATTACAT+TGG + chr1.1:42169796-42169815 MS.gene46489:CDS 40.0%
TTTGTCGTGATGGCTTAGAA+TGG + chr1.1:42170818-42170837 MS.gene46489:intron 40.0%
!! TACTTGCTGGCTTGATTTGA+AGG + chr1.1:42171155-42171174 MS.gene46489:intron 40.0%
!! TTCTGGTTTGATATGGAGGA+TGG + chr1.1:42170157-42170176 MS.gene46489:intron 40.0%
ACATATGTTCCACACACTGC+TGG + chr1.1:42169838-42169857 MS.gene46489:CDS 45.0%
AGCTTGACTTCGATCAGGTT+TGG - chr1.1:42169282-42169301 None:intergenic 45.0%
AGTTGTAAGAAGACAGGCTG+TGG + chr1.1:42171862-42171881 MS.gene46489:CDS 45.0%
ATACGAGTAGCATCTTCACG+AGG - chr1.1:42171830-42171849 None:intergenic 45.0%
ATGATGCATGGGAGGAACAA+TGG + chr1.1:42169928-42169947 MS.gene46489:CDS 45.0%
ATTCTGGCGGTCAAACCAAT+AGG - chr1.1:42171204-42171223 None:intergenic 45.0%
CAAACTGAAGCTGCTGAGAA+TGG - chr1.1:42169109-42169128 None:intergenic 45.0%
CAATGACCTGAATTGGGTTC+TGG - chr1.1:42170017-42170036 None:intergenic 45.0%
CACTTGTGTCCTTTGTACAG+TGG + chr1.1:42171803-42171822 MS.gene46489:intron 45.0%
CAGCAAAAGGATCATCCAAC+AGG + chr1.1:42172005-42172024 MS.gene46489:CDS 45.0%
CATTCTCAGCAGCTTCAGTT+TGG + chr1.1:42169107-42169126 MS.gene46489:CDS 45.0%
CGTGAAGATGCTACTCGTAT+TGG + chr1.1:42171830-42171849 MS.gene46489:CDS 45.0%
GACCATTCTCCTGACATTCT+AGG + chr1.1:42170916-42170935 MS.gene46489:intron 45.0%
GATACTCGAAGAAGCGATTC+AGG + chr1.1:42169863-42169882 MS.gene46489:CDS 45.0%
GTTAGTGAGCCTCTCAACAA+TGG - chr1.1:42169902-42169921 None:intergenic 45.0%
TGAAGAGCTTGACTTCGATC+AGG - chr1.1:42169287-42169306 None:intergenic 45.0%
TGCTGGAGTTGTAAGAAGAC+AGG + chr1.1:42171856-42171875 MS.gene46489:CDS 45.0%
TGGTTTGACTGCCAGAATGA+TGG + chr1.1:42170576-42170595 MS.gene46489:intron 45.0%
TTCGTTTCTCTATGCAGCCA+TGG + chr1.1:42169218-42169237 MS.gene46489:intron 45.0%
TTGTTGATGCTGTCGTCAAC+AGG + chr1.1:42170034-42170053 MS.gene46489:CDS 45.0%
!! TGCTGGCTTGATTTGAAGGA+TGG + chr1.1:42171159-42171178 MS.gene46489:intron 45.0%
!! AAAAAATTATTTCAATTAAT+TGG + chr1.1:42169693-42169712 MS.gene46489:intron 5.0%
!!! TTTTATTAGATATAAAAAAA+TGG - chr1.1:42170942-42170961 None:intergenic 5.0%
!!! TTTTTTTTTATTTTATTTTC+TGG + chr1.1:42170140-42170159 MS.gene46489:intron 5.0%
AACCGACCAGAACCCAATTC+AGG + chr1.1:42170008-42170027 MS.gene46489:CDS 50.0%
AACCGTGATTGAGGTGGATG+CGG - chr1.1:42169136-42169155 None:intergenic 50.0%
AAGTCAAGCTCTTCAACCGC+TGG + chr1.1:42169292-42169311 MS.gene46489:CDS 50.0%
ACAAGCTGCCATCATTCTGG+CGG - chr1.1:42171217-42171236 None:intergenic 50.0%
ACTCTCTCATGATGCATGGG+AGG + chr1.1:42169920-42169939 MS.gene46489:CDS 50.0%
CTCAGTGTCCCATTGTTGAG+AGG + chr1.1:42169890-42169909 MS.gene46489:CDS 50.0%
GAAGCTGCTGAGAATGGAGA+AGG - chr1.1:42169103-42169122 None:intergenic 50.0%
GAGTATCTACCAGCAGTGTG+TGG - chr1.1:42169850-42169869 None:intergenic 50.0%
GCTTGATTCACACGACGAAG+GGG - chr1.1:42171896-42171915 None:intergenic 50.0%
GGCCTAGAATGTCAGGAGAA+TGG - chr1.1:42170921-42170940 None:intergenic 50.0%
GGCTTGATTCACACGACGAA+GGG - chr1.1:42171897-42171916 None:intergenic 50.0%
TCACGAGGACCACTGTACAA+AGG - chr1.1:42171815-42171834 None:intergenic 50.0%
TGAACGAACCGTGATTGAGG+TGG - chr1.1:42169142-42169161 None:intergenic 50.0%
TGCTGAGAATGGAGAAGGTG+TGG - chr1.1:42169098-42169117 None:intergenic 50.0%
TGGCTTGATTCACACGACGA+AGG - chr1.1:42171898-42171917 None:intergenic 50.0%
TGGTTTGACCGCCAGAATGA+TGG + chr1.1:42171206-42171225 MS.gene46489:intron 50.0%
! GACCTGAATTGGGTTCTGGT+CGG - chr1.1:42170013-42170032 None:intergenic 50.0%
! GGATCTGAAACGACTGCAAC+AGG - chr1.1:42169261-42169280 None:intergenic 50.0%
!! GCTACTCGTATTGGTTCTGC+TGG + chr1.1:42171839-42171858 MS.gene46489:CDS 50.0%
CTGGAGCTTCGATGACGTTC+AGG + chr1.1:42169311-42169330 MS.gene46489:CDS 55.0%
GAACGTCATCGAAGCTCCAG+CGG - chr1.1:42169311-42169330 None:intergenic 55.0%
TGCCGCATCCACCTCAATCA+CGG + chr1.1:42169131-42169150 MS.gene46489:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 42169059 42172198 42169059 ID=MS.gene46489
chr1.1 mRNA 42169059 42172198 42169059 ID=MS.gene46489.t1;Parent=MS.gene46489
chr1.1 exon 42169059 42169152 42169059 ID=MS.gene46489.t1.exon1;Parent=MS.gene46489.t1
chr1.1 CDS 42169059 42169152 42169059 ID=cds.MS.gene46489.t1;Parent=MS.gene46489.t1
chr1.1 exon 42169235 42169332 42169235 ID=MS.gene46489.t1.exon2;Parent=MS.gene46489.t1
chr1.1 CDS 42169235 42169332 42169235 ID=cds.MS.gene46489.t1;Parent=MS.gene46489.t1
chr1.1 exon 42169787 42170055 42169787 ID=MS.gene46489.t1.exon3;Parent=MS.gene46489.t1
chr1.1 CDS 42169787 42170055 42169787 ID=cds.MS.gene46489.t1;Parent=MS.gene46489.t1
chr1.1 exon 42171823 42172026 42171823 ID=MS.gene46489.t1.exon4;Parent=MS.gene46489.t1
chr1.1 CDS 42171823 42172026 42171823 ID=cds.MS.gene46489.t1;Parent=MS.gene46489.t1
chr1.1 exon 42172144 42172198 42172144 ID=MS.gene46489.t1.exon5;Parent=MS.gene46489.t1
chr1.1 CDS 42172144 42172198 42172144 ID=cds.MS.gene46489.t1;Parent=MS.gene46489.t1
Gene Sequence

>MS.gene46489

ATGAACCAATGCACCAAAATTAGGGTTTATCACATACCACACCTTCTCCATTCTCAGCAGCTTCAGTTTGGTTGCCGCATCCACCTCAATCACGGTTCGTTCATTTCCTTCACATTCTTCGAATCTTCGTTCCTTTTCTGTATCCACTGTTTCTCATTGTTCGTTTCTCTATGCAGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGGTAATTTTTTCACATTTCTTCAGATTTAGTTTTTAATTAGTTTCATGTTTAGGTTAATTCTTAATTAATTCTTAATTACTCTGTCTGAAATGTTGTAAAAATTTATGATTTTTTTGTTGTTTGTTGAAATTTTTGTAGTTGGTGTTTTAGTTTTCTGATGTATCAACTGAATTTATTTTTTATTTCAATTAATTGAATTTTTATTGTGTTTTAGTAATTTAAAAATGTTGTGATTAGTTTTGCAATTTTTGTTATTCCAGATTATTTGGTGTTTCTTGTTTTAGTTTTCTGATAGCTAATGAAAAGCAATGAATTTTCTCTAAAAATATGTTTTAGTTTTCTGATGTATTATGCTGCAAAAAAAAATTATTTCAATTAATTGGTTTTTTTATTGTGTTTTAGTGATAAAAAAATGTAGTGATTAATGTTGGAATTTTGATTTTGATTATATCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAACATGCAACATATGTTCCACACACTGCTGGTAGATACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTAACCGACCAGAACCCAATTCAGGTCATTGTTGATGCTGTCGTCAACAGGTATGAATCGTTGATTGTTGATGGCTGTAGAAATTTGAGTTTGATATTGTAAAATTGTTGATGTTTTTCAATTATTGAAACAATTTTTTTTTTATTTTATTTTCTGGTTTGATATGGAGGATGGAGTGATGAATTTTTGTTTCCCTATTGGTTTGACTGCAAGAGTGATGCAATTTTATTAGAACTATCTGACCATTCTCCTAACATTCCAGTTAATTTTTTGTTTAAATTCTAATTTGACATATTGGAACGTATGAAGATAAACCCTTTATGTTTCGTTAGTAATGATTGTTGAGGACATTGTAAAGAAACACTTTGAGTAAATTATGTGTGCAAGTTATCATAAATAAACACTTTGGAAATAATATTTCTATGTTTTTGATGGCTGTAGGAAATTTGAGTTGATACCGTGAGATCTGTCTTGTGTATGTAATTATTGTGATCCTGATTAGGTTGTTCTTTTTTTAAATTTTTTCTGGTTTGATATGGTGAATGGAATGATGAATATTTGTTTCCCTATTGGTTTGACTGCCAGAATGATGCAATTTGTTTTAAAACTATCTGACCATTCTCATATCATTCCAGCTTATTGTTTTTTTAATATCTAATTAGATTAGATATGTTTTTTATTATTTTTGATGAAGATATGCCTCATATGTTTCATTAGTAAAGACTGTTAAGGAGATTGAAAAGAAGCTGTTACTGAAATAAACATTTGAATTATTACTTGTAAATGATTTGAATTTGAATGATGTTTGTGTATTTGTCGTGATGGCTTAGAATGGAGAATGGAGTGATGAATATTTGTTTTCCTATTGGTTTGACTGCCAGAATGATGGCAATTTGTATTAGCTCTATCTGACCATTCTCCTGACATTCTAGGCCATTTTTTTATATCTAATAAAAAATTAATTAGAAATTAATAAGAAATATGGTTCTGTTTCAGCATGAAAACAACTTCCTTTTGTGTTACTTATAAGAGACAACACTATAAAAGATATTTATAAGAAATACTCAAGTAATTAAAGTTAAAGTTGTTGTAAACAAACTTTGCCAATTTTTTTCCTTTCAAATACGTGTGAATCATAGTGTTATGATTTACTTGCTGGCTTGATTTGAAGGATGGAATGATGAATAATTTGTTTCCTATTGGTTTGACCGCCAGAATGATGGCAGCTTGTATTAGCTCTATCTGACCATTCTTATTTCCCAGCTCATTTTTATTTTCAATTTATTACAAACTAATCACTTTGCAGAAGAAATGATATTGTTAGATAATCACAGCTTTTTGATATCTTACATTTCATGAGTTATGATTATCTTGGCTGTTTTGTTCGATTTTAAATCTACTTTCGTTTTTAAGCATAGAAACTGCGATAATAAGAATCGGAGAATGACATGATGATTGGTTATTTCCCTATTGGTTTGATTGCCTTGATGATGGCACTTATGTATTAGCTCTATCTGATCATTCTCCTTAATAAATAGAATTTTGATTGTTTTTATCTGTTTAATTGATTGATGAATTTCCTCGTCATTTGTGTATTACTTGTGATTGGTTGTTGCCTTGTTGCTTAAATATGCCATTGTTTACTTTCTGTGGTTGTTATTTACCCATCGTCTAAAGGGTTAATATGGACTTGCAATTAGGATGTGTGTTTTGTCAAGATTGCAATTTATGCTGTTTTCATGTTCCATTAATATACTACTACCTTTTTTGAATTTGGATCTGATTTATTTGTGTATGCACTTGTGTCCTTTGTACAGTGGTCCTCGTGAAGATGCTACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCACGTGAAGCTGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGGTATGCTTTTTCAAATTTTATCTGTGTACACATGCAGTCTTCCATAATTTTTTTTCATCTCTTGTGTTTTAGTCCTTTTAATTCTTTGACTTATGATAAATACATTATCTCTTTCAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA
Protein sequence

>MS.gene46489.t1

MNQCTKIRVYHIPHLLHSQQLQFGCRIHLNHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR