Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25236.t1 | XP_013450311.1 | 98.1 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.60E-105 | 392.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25236.t1 | O65731 | 93.3 | 195 | 13 | 0 | 13 | 207 | 3 | 197 | 3.3e-96 | 352.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25236.t1 | I3SKT5 | 98.1 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.1e-105 | 392.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene25236 | 0.862489 | 4.89E-64 | -1.69E-46 |
| MS.gene049387 | MS.gene25236 | 0.852547 | 4.30E-61 | -1.69E-46 |
| MS.gene050134 | MS.gene25236 | 0.883012 | 6.43E-71 | -1.69E-46 |
| MS.gene050791 | MS.gene25236 | 0.843064 | 1.76E-58 | -1.69E-46 |
| MS.gene051925 | MS.gene25236 | 0.871826 | 5.08E-67 | -1.69E-46 |
| MS.gene051927 | MS.gene25236 | 0.856714 | 2.67E-62 | -1.69E-46 |
| MS.gene051984 | MS.gene25236 | 0.833626 | 4.79E-56 | -1.69E-46 |
| MS.gene052209 | MS.gene25236 | 0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene052664 | MS.gene25236 | 0.840949 | 6.39E-58 | -1.69E-46 |
| MS.gene052666 | MS.gene25236 | 0.830048 | 3.66E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene25236 | 0.858822 | 6.33E-63 | -1.69E-46 |
| MS.gene054624 | MS.gene25236 | 0.858573 | 7.51E-63 | -1.69E-46 |
| MS.gene054662 | MS.gene25236 | 0.825992 | 3.46E-54 | -1.69E-46 |
| MS.gene057272 | MS.gene25236 | 0.880522 | 5.12E-70 | -1.69E-46 |
| MS.gene057321 | MS.gene25236 | 0.843509 | 1.34E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene25236 | 0.821617 | 3.67E-53 | -1.69E-46 |
| MS.gene057643 | MS.gene25236 | 0.84284 | 2.02E-58 | -1.69E-46 |
| MS.gene058994 | MS.gene25236 | 0.810341 | 1.21E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene25236 | 0.878661 | 2.34E-69 | -1.69E-46 |
| MS.gene060483 | MS.gene25236 | 0.852099 | 5.76E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25236 | MS.gene39207 | PPI |
| MS.gene25236 | MS.gene070600 | PPI |
| MS.gene25236 | MS.gene007033 | PPI |
| MS.gene25236 | MS.gene23038 | PPI |
| MS.gene25236 | MS.gene034626 | PPI |
| MS.gene070601 | MS.gene25236 | PPI |
| MS.gene46489 | MS.gene25236 | PPI |
| MS.gene25639 | MS.gene25236 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25236.t1 | MTR_7g107380 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.67e-150 | 416 |
| MS.gene25236.t1 | MTR_1g054310 | 94.737 | 209 | 7 | 3 | 1 | 207 | 33 | 239 | 8.99e-141 | 392 |
| MS.gene25236.t1 | MTR_0515s0010 | 90.789 | 76 | 7 | 0 | 46 | 121 | 5 | 80 | 5.87e-47 | 149 |
| MS.gene25236.t1 | MTR_0306s0010 | 90.789 | 76 | 7 | 0 | 46 | 121 | 5 | 80 | 5.87e-47 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25236.t1 | AT2G37270 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.04e-132 | 369 |
| MS.gene25236.t1 | AT2G37270 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.04e-132 | 369 |
| MS.gene25236.t1 | AT3G11940 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.30e-130 | 365 |
| MS.gene25236.t1 | AT3G11940 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.30e-130 | 365 |
| MS.gene25236.t1 | ATCG01240 | 34.532 | 139 | 78 | 5 | 71 | 207 | 22 | 149 | 9.93e-11 | 58.2 |
| MS.gene25236.t1 | ATCG00900 | 34.532 | 139 | 78 | 5 | 71 | 207 | 22 | 149 | 9.93e-11 | 58.2 |
Find 0 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTGAATTATTATTAAT+TGG | + | 51725:14168-14187 | MS.gene25236:intron | 10.0% |
| !!! | AATACTTTTTTGAATATTTA+AGG | + | 51725:15503-15522 | MS.gene25236:intron | 10.0% |
| !!! | AATTATATTATTTTATGTAG+TGG | + | 51725:15869-15888 | MS.gene25236:intron | 10.0% |
| !!! | ATACTTTTTTGAATATTTAA+GGG | + | 51725:15504-15523 | MS.gene25236:intron | 10.0% |
| !!! | TTTCAATAAATATTTTATCT+TGG | + | 51725:14756-14775 | MS.gene25236:intron | 10.0% |
| !! | AATTTATCTGTTTACATATA+GGG | - | 51725:14935-14954 | MS.gene25236:intergenic | 15.0% |
| !! | TAAAATAAAAAAACCCATTA+AGG | - | 51725:13134-13153 | MS.gene25236:intergenic | 15.0% |
| !! | TAATTTATCTGTTTACATAT+AGG | - | 51725:14936-14955 | MS.gene25236:intergenic | 15.0% |
| !!! | AAACTTTAAAGATTGAATAA+TGG | - | 51725:16104-16123 | MS.gene25236:intergenic | 15.0% |
| !!! | ATAAATCAACTTGAATTTTT+TGG | + | 51725:13807-13826 | MS.gene25236:intron | 15.0% |
| !!! | GCTATTTTCATAATTTATAT+TGG | + | 51725:12980-12999 | MS.gene25236:intron | 15.0% |
| !!! | GTTTTTAAATTGTTAAAACT+GGG | + | 51725:14203-14222 | MS.gene25236:intron | 15.0% |
| !!! | TGTTTTTAAATTGTTAAAAC+TGG | + | 51725:14202-14221 | MS.gene25236:intron | 15.0% |
| !! | AATAATATGAAACAGATCAA+TGG | - | 51725:13608-13627 | MS.gene25236:intergenic | 20.0% |
| !! | AGTCAATATATATCAATCAT+AGG | - | 51725:13531-13550 | MS.gene25236:intergenic | 20.0% |
| !! | ATGATTTATTATTTCCCTAT+TGG | + | 51725:14918-14937 | MS.gene25236:intron | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | - | 51725:14720-14739 | MS.gene25236:intergenic | 20.0% |
| !! | GTATAAGTGATCAAATATAT+AGG | + | 51725:14345-14364 | MS.gene25236:intron | 20.0% |
| !! | GTCAATATATATCAATCATA+GGG | - | 51725:13530-13549 | MS.gene25236:intergenic | 20.0% |
| !! | TATTAACAATTAACTGTGTA+TGG | + | 51725:15704-15723 | MS.gene25236:intron | 20.0% |
| !! | TCACTTATACATAACAAATA+AGG | - | 51725:14335-14354 | MS.gene25236:intergenic | 20.0% |
| !! | TGTCATATTGTAATCAAATT+TGG | + | 51725:14725-14744 | MS.gene25236:intron | 20.0% |
| !! | TTTATAGCATTATAACTACA+TGG | - | 51725:14393-14412 | MS.gene25236:intergenic | 20.0% |
| !!! | ATGATTATTTGTTTTCCTAT+TGG | + | 51725:13687-13706 | MS.gene25236:intron | 20.0% |
| !!! | ATGCTATAAATATTTTGTGA+TGG | + | 51725:14403-14422 | MS.gene25236:intron | 20.0% |
| !!! | ATTTTAATAAAACAAAGTCC+AGG | - | 51725:14033-14052 | MS.gene25236:intergenic | 20.0% |
| !!! | TGTTTTGTGATCAAATATAT+AGG | + | 51725:14428-14447 | MS.gene25236:intron | 20.0% |
| !!! | TTGAAATTGAATTTTTGATG+CGG | + | 51725:13627-13646 | MS.gene25236:intron | 20.0% |
| ! | AATCTAAATAGGTCCTTAAT+GGG | + | 51725:13118-13137 | MS.gene25236:intron | 25.0% |
| ! | ACATATCCTAAAACTAAAAC+TGG | - | 51725:15835-15854 | MS.gene25236:intergenic | 25.0% |
| ! | AGAAAACAAATTCAGTACAT+TGG | - | 51725:16127-16146 | MS.gene25236:intergenic | 25.0% |
| ! | AGTAATCAATTAATCATGCA+TGG | + | 51725:14780-14799 | MS.gene25236:intron | 25.0% |
| ! | ATTAAAGTAGTAAAGTGTGA+AGG | + | 51725:14969-14988 | MS.gene25236:intron | 25.0% |
| ! | ATTGAAAGGAGAAAATGAAA+TGG | - | 51725:15659-15678 | MS.gene25236:intergenic | 25.0% |
| ! | CGAGAAACAAATTGTAAATA+AGG | + | 51725:15750-15769 | MS.gene25236:intron | 25.0% |
| ! | GAAAAAAGTGACAAATGATA+AGG | - | 51725:13765-13784 | MS.gene25236:intergenic | 25.0% |
| ! | GATGATTTATTGTTTCCTAT+TGG | + | 51725:14258-14277 | MS.gene25236:intron | 25.0% |
| ! | TAAATCATCATTTCATTCTC+CGG | - | 51725:14247-14266 | MS.gene25236:intergenic | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | + | 51725:13107-13126 | MS.gene25236:intron | 25.0% |
| ! | TGATTAATACTTGATAGAGA+AGG | + | 51725:14531-14550 | MS.gene25236:intron | 25.0% |
| ! | TTAATTCAAAGCAAAAACTG+AGG | + | 51725:15790-15809 | MS.gene25236:intron | 25.0% |
| ! | TTGTTTATTCTCACTTTGTT+TGG | + | 51725:14124-14143 | MS.gene25236:intron | 25.0% |
| !! | CTTTAAAGATTGAATAATGG+TGG | - | 51725:16101-16120 | MS.gene25236:intergenic | 25.0% |
| !! | GTAATTTTTACTTGTACGAA+AGG | + | 51725:14825-14844 | MS.gene25236:intron | 25.0% |
| !!! | AAGTTTGAAATCTTTTCTTG+TGG | + | 51725:15339-15358 | MS.gene25236:intron | 25.0% |
| !!! | AATTGTTTGTTTTTTTCCTC+TGG | + | 51725:15300-15319 | MS.gene25236:intron | 25.0% |
| !!! | ACTATTTTAGCTGTTAAGAT+TGG | + | 51725:14587-14606 | MS.gene25236:intron | 25.0% |
| !!! | CTATTTTAGCTGTTAAGATT+GGG | + | 51725:14588-14607 | MS.gene25236:intron | 25.0% |
| !!! | GATGATTTTTTGTTTCCTAT+TGG | + | 51725:14643-14662 | MS.gene25236:intron | 25.0% |
| !!! | TATTTTAGCTGTTAAGATTG+GGG | + | 51725:14589-14608 | MS.gene25236:intron | 25.0% |
| !!! | TATTTTCAAGTAACTCATGT+CGG | + | 51725:13075-13094 | MS.gene25236:intron | 25.0% |
| !!! | TTAAGAATTTTGACAATGCA+TGG | + | 51725:13846-13865 | MS.gene25236:intron | 25.0% |
| AATACTTGATAGAGAAGGAT+AGG | + | 51725:14536-14555 | MS.gene25236:intron | 30.0% | |
| AATCTTGCATCATTACTACA+AGG | - | 51725:15275-15294 | MS.gene25236:intergenic | 30.0% | |
| ACAGCCATAGTTATCAATAT+TGG | + | 51725:15144-15163 | MS.gene25236:intron | 30.0% | |
| ACATGCATTATTACTGTTGA+GGG | - | 51725:14060-14079 | MS.gene25236:intergenic | 30.0% | |
| ACCAGTTGTTAGAAGATATA+TGG | - | 51725:15984-16003 | MS.gene25236:intergenic | 30.0% | |
| ATACAAAAACGTCATCATCT+AGG | - | 51725:14292-14311 | MS.gene25236:intergenic | 30.0% | |
| ATCCTAAAACTAAAACTGGT+TGG | - | 51725:15831-15850 | MS.gene25236:intergenic | 30.0% | |
| ATCTTGCATCATTACTACAA+GGG | - | 51725:15274-15293 | MS.gene25236:intergenic | 30.0% | |
| ATTCAGGTATTCAAACCAAT+AGG | - | 51725:13705-13724 | MS.gene25236:intergenic | 30.0% | |
| CAATCTAAATAGGTCCTTAA+TGG | + | 51725:13117-13136 | MS.gene25236:intron | 30.0% | |
| CAGCCATAGTTATCAATATT+GGG | + | 51725:15145-15164 | MS.gene25236:intron | 30.0% | |
| CATTAAGGACCTATTTAGAT+TGG | - | 51725:13119-13138 | MS.gene25236:intergenic | 30.0% | |
| CTGCTTAATATGTCTTGATT+TGG | + | 51725:13653-13672 | MS.gene25236:intron | 30.0% | |
| GCATCAACTATAACTTGAAT+TGG | - | 51725:13464-13483 | MS.gene25236:intergenic | 30.0% | |
| GGGAAAATAACAAAATGCAA+AGG | - | 51725:13510-13529 | MS.gene25236:intergenic | 30.0% | |
| TACAAAAAATGCCATCATTC+AGG | - | 51725:13721-13740 | MS.gene25236:intergenic | 30.0% | |
| TCAGATAGAGCTAATACAAA+AGG | - | 51725:13735-13754 | MS.gene25236:intergenic | 30.0% | |
| TCCTAAAACTAAAACTGGTT+GGG | - | 51725:15830-15849 | MS.gene25236:intergenic | 30.0% | |
| TTGATTTACTGTTTCCCTAT+TGG | + | 51725:13956-13975 | MS.gene25236:intron | 30.0% | |
| ! | CAACCCAATATTGATAACTA+TGG | - | 51725:15151-15170 | MS.gene25236:intergenic | 30.0% |
| !! | GTACTGAATTTGTTTTCTCT+TGG | + | 51725:16129-16148 | MS.gene25236:intron | 30.0% |
| !! | TTGTTTCCTATTGGTTTGAT+TGG | + | 51725:14267-14286 | MS.gene25236:intron | 30.0% |
| !!! | ATTTTAGCTGTTAAGATTGG+GGG | + | 51725:14590-14609 | MS.gene25236:intron | 30.0% |
| AAACAACGGAAAGAAACTCA+TGG | + | 51725:13382-13401 | MS.gene25236:CDS | 35.0% | |
| AACAAGTTGTTCATCCAAAC+AGG | - | 51725:12894-12913 | MS.gene25236:intergenic | 35.0% | |
| AATAATGGTGGTATACCTGT+TGG | - | 51725:16089-16108 | MS.gene25236:intergenic | 35.0% | |
| AATACAAAATGCCATCATCC+AGG | - | 51725:15454-15473 | MS.gene25236:intergenic | 35.0% | |
| AATCCTACCCAAATTACACA+CGG | - | 51725:15564-15583 | MS.gene25236:intergenic | 35.0% | |
| AATTGTCACAGCTTAAGCTT+TGG | + | 51725:15114-15133 | MS.gene25236:intron | 35.0% | |
| ACAAGTTGTTCATCCAAACA+GGG | - | 51725:12893-12912 | MS.gene25236:intergenic | 35.0% | |
| AGCTTGACTTCGTTTAGATT+GGG | - | 51725:12722-12741 | MS.gene25236:intergenic | 35.0% | |
| AGGAACATATGTTGCATGTT+TGG | - | 51725:13270-13289 | MS.gene25236:intergenic | 35.0% | |
| ATACAAAAATGCCATCATGC+AGG | - | 51725:13990-14009 | MS.gene25236:intergenic | 35.0% | |
| ATCTAGCCAATCAAACCAAT+AGG | - | 51725:14661-14680 | MS.gene25236:intergenic | 35.0% | |
| ATCTAGGCAATCAAACCAAT+AGG | - | 51725:14276-14295 | MS.gene25236:intergenic | 35.0% | |
| CACATGCATTATTACTGTTG+AGG | - | 51725:14061-14080 | MS.gene25236:intergenic | 35.0% | |
| CTATAGAAATAAGCCCTGTT+TGG | + | 51725:12877-12896 | MS.gene25236:intron | 35.0% | |
| GCCATATATCTTCTAACAAC+TGG | + | 51725:15980-15999 | MS.gene25236:CDS | 35.0% | |
| GTGACAAATGATAAGGAGAA+TGG | - | 51725:13758-13777 | MS.gene25236:intergenic | 35.0% | |
| TAAGACAATTGCTGAATGCT+TGG | + | 51725:16030-16049 | MS.gene25236:CDS | 35.0% | |
| TAAGCAATAAACATCACCAG+AGG | - | 51725:15319-15338 | MS.gene25236:intergenic | 35.0% | |
| TCTCAGCACATAACATTGAA+AGG | - | 51725:15673-15692 | MS.gene25236:intergenic | 35.0% | |
| TCTTGCATCATTACTACAAG+GGG | - | 51725:15273-15292 | MS.gene25236:intergenic | 35.0% | |
| TGGTTTGAATACCTGAATGA+TGG | + | 51725:13707-13726 | MS.gene25236:intron | 35.0% | |
| TGTTAGCAAAGAACCAAACA+AGG | - | 51725:16161-16180 | MS.gene25236:intergenic | 35.0% | |
| ! | CTCTTGGATTTTTCCTTGTT+TGG | + | 51725:16145-16164 | MS.gene25236:intron | 35.0% |
| ! | GAAATCTTTTCTTGTGGTAG+AGG | + | 51725:15345-15364 | MS.gene25236:intron | 35.0% |
| !! | CAAACAGGGCTTATTTCTAT+AGG | - | 51725:12879-12898 | MS.gene25236:intergenic | 35.0% |
| !! | TAGGTGGGTTGGTTATTAAT+TGG | + | 51725:14555-14574 | MS.gene25236:intron | 35.0% |
| !!! | TACAACTAGCTTTTGATTGC+TGG | + | 51725:14878-14897 | MS.gene25236:intron | 35.0% |
| !!! | TCCCAACCAGTTTTAGTTTT+AGG | + | 51725:15826-15845 | MS.gene25236:intron | 35.0% |
| AAGTCAAGCTCTTCAACCAA+TGG | + | 51725:12732-12751 | MS.gene25236:CDS | 40.0% | |
| AATACAAAAGGCCATCATCC+TGG | - | 51725:15178-15197 | MS.gene25236:intergenic | 40.0% | |
| AATTACACACGGCATCATCT+AGG | - | 51725:15553-15572 | MS.gene25236:intergenic | 40.0% | |
| ACCTACTTACTCATCCGAAT+CGG | + | 51725:13921-13940 | MS.gene25236:intron | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | + | 51725:13356-13375 | MS.gene25236:CDS | 40.0% | |
| ACTTGATAGAGAAGGATAGG+TGG | + | 51725:14539-14558 | MS.gene25236:intron | 40.0% | |
| AGAGAAGATGCAACCAGAAT+TGG | + | 51725:15896-15915 | MS.gene25236:CDS | 40.0% | |
| AGATGATGCCGTGTGTAATT+TGG | + | 51725:15553-15572 | MS.gene25236:intron | 40.0% | |
| AGATTACCGATCTGTCTCTT+GGG | + | 51725:13222-13241 | MS.gene25236:intron | 40.0% | |
| ATCCAGGCAATCAAACCAAT+AGG | - | 51725:15438-15457 | MS.gene25236:intergenic | 40.0% | |
| ATGCAGGCAATCAAACCAAT+AGG | - | 51725:13974-13993 | MS.gene25236:intergenic | 40.0% | |
| ATTACACACGGCATCATCTA+GGG | - | 51725:15552-15571 | MS.gene25236:intergenic | 40.0% | |
| CAGCTATGCGATCAAGAAAA+AGG | + | 51725:16194-16213 | MS.gene25236:intron | 40.0% | |
| CTTGATAGAGAAGGATAGGT+GGG | + | 51725:14540-14559 | MS.gene25236:intron | 40.0% | |
| GAAAGAAACTCATGGCTGTT+AGG | + | 51725:13390-13409 | MS.gene25236:CDS | 40.0% | |
| GAGCTTGACTTCGTTTAGAT+TGG | - | 51725:12723-12742 | MS.gene25236:intergenic | 40.0% | |
| GATGATGCCGTGTGTAATTT+GGG | + | 51725:15554-15573 | MS.gene25236:intron | 40.0% | |
| TAGCAAGTGAATGATCTCCA+TGG | - | 51725:13429-13448 | MS.gene25236:intergenic | 40.0% | |
| TAGGATCATTAAGCATGCCA+TGG | + | 51725:13409-13428 | MS.gene25236:CDS | 40.0% | |
| TCAAAGCAAAAACTGAGGCT+TGG | + | 51725:15795-15814 | MS.gene25236:intron | 40.0% | |
| TCCAGGCAATCAAACCAATA+GGG | - | 51725:15437-15456 | MS.gene25236:intergenic | 40.0% | |
| TGCAGGCAATCAAACCAATA+GGG | - | 51725:13973-13992 | MS.gene25236:intergenic | 40.0% | |
| TGTTCCTAAATGCAGCTTCA+CGG | - | 51725:16009-16028 | MS.gene25236:intergenic | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | 51725:13341-13360 | MS.gene25236:intergenic | 40.0% | |
| ! | AACTTTTCATCCTCCCGATT+CGG | - | 51725:13938-13957 | MS.gene25236:intergenic | 40.0% |
| ! | ATTCTGGTTGCATCTTCTCT+AGG | - | 51725:15896-15915 | MS.gene25236:intergenic | 40.0% |
| ! | GAGCTGTTGATTGTTTGAAC+TGG | + | 51725:14225-14244 | MS.gene25236:intron | 40.0% |
| ! | TGGTTTGATTGGCTAGATGA+TGG | + | 51725:14663-14682 | MS.gene25236:intron | 40.0% |
| !! | TAGCTTTTGATTGCTGGAAC+CGG | + | 51725:14884-14903 | MS.gene25236:intron | 40.0% |
| !! | TCAATATTGGGTTGATAGCC+AGG | + | 51725:15157-15176 | MS.gene25236:intron | 40.0% |
| AACTCCAGCAGATCCAATTC+TGG | - | 51725:15912-15931 | MS.gene25236:intergenic | 45.0% | |
| ACATATGTTCCTCACACTGC+TGG | + | 51725:13278-13297 | MS.gene25236:CDS | 45.0% | |
| AGATTGGGATCAACTTCGAC+TGG | - | 51725:12707-12726 | MS.gene25236:intergenic | 45.0% | |
| ATACCTGTTGGATGAACCCT+TGG | - | 51725:16077-16096 | MS.gene25236:intergenic | 45.0% | |
| ATAGAGAAGGATAGGTGGGT+TGG | + | 51725:14544-14563 | MS.gene25236:intron | 45.0% | |
| ATGATGCACGGCAGAAACAA+CGG | + | 51725:13368-13387 | MS.gene25236:CDS | 45.0% | |
| ATGCCGTGTGTAATTTGGGT+AGG | + | 51725:15558-15577 | MS.gene25236:intron | 45.0% | |
| CAAGAGACAGATCGGTAATC+TGG | - | 51725:13223-13242 | MS.gene25236:intergenic | 45.0% | |
| CAGATTACCGATCTGTCTCT+TGG | + | 51725:13221-13240 | MS.gene25236:intron | 45.0% | |
| CCTACTTACTCATCCGAATC+GGG | + | 51725:13922-13941 | MS.gene25236:intron | 45.0% | |
| CTGTCTCTTGGGGATTACAT+TGG | + | 51725:13233-13252 | MS.gene25236:CDS | 45.0% | |
| GAACTCATTAACGCTGCCAA+GGG | + | 51725:16058-16077 | MS.gene25236:CDS | 45.0% | |
| GATTACCGATCTGTCTCTTG+GGG | + | 51725:13223-13242 | MS.gene25236:intron | 45.0% | |
| GATTGGGATCAACTTCGACT+GGG | - | 51725:12706-12725 | MS.gene25236:intergenic | 45.0% | |
| GCTCTATCTGATCATTCTCC+TGG | + | 51725:14012-14031 | MS.gene25236:intron | 45.0% | |
| GTAATCCCCAAGAGACAGAT+CGG | - | 51725:13231-13250 | MS.gene25236:intergenic | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | 51725:13342-13361 | MS.gene25236:intergenic | 45.0% | |
| GTTCCTAAATGCAGCTTCAC+GGG | - | 51725:16008-16027 | MS.gene25236:intergenic | 45.0% | |
| TAAGATTGGGGGCTGTTGAT+TGG | + | 51725:14601-14620 | MS.gene25236:intron | 45.0% | |
| TGAACTCATTAACGCTGCCA+AGG | + | 51725:16057-16076 | MS.gene25236:CDS | 45.0% | |
| TGAGATTGAGAGAGTTGCCA+AGG | + | 51725:16218-16237 | MS.gene25236:CDS | 45.0% | |
| TGGATATCTCTCCTCTTCGT+CGG | + | 51725:15948-15967 | MS.gene25236:CDS | 45.0% | |
| TGGTTTGATTGCCTGCATGA+TGG | + | 51725:13976-13995 | MS.gene25236:intron | 45.0% | |
| TGGTTTGATTGCCTGGATGA+TGG | + | 51725:15440-15459 | MS.gene25236:intron | 45.0% | |
| TTGGATCTGCTGGAGTTGTT+AGG | + | 51725:15915-15934 | MS.gene25236:CDS | 45.0% | |
| ! | TAGTTGATGCTGTCGTCAAC+AGG | + | 51725:13474-13493 | MS.gene25236:CDS | 45.0% |
| !! | TCCCTATTGGTTTGATTGCC+TGG | + | 51725:13969-13988 | MS.gene25236:intron | 45.0% |
| AACTTCGACTGGGATAGCGA+CGG | - | 51725:12696-12715 | MS.gene25236:intergenic | 50.0% | |
| ACTTACTCATCCGAATCGGG+AGG | + | 51725:13925-13944 | MS.gene25236:intron | 50.0% | |
| ATGTTCCTCACACTGCTGGT+AGG | + | 51725:13282-13301 | MS.gene25236:CDS | 50.0% | |
| CTCAGTGTCCCATTGTTGAG+AGG | + | 51725:13330-13349 | MS.gene25236:CDS | 50.0% | |
| GATCTGCTGGAGTTGTTAGG+AGG | + | 51725:15918-15937 | MS.gene25236:CDS | 50.0% | |
| GCAACCAGAATTGGATCTGC+TGG | + | 51725:15905-15924 | MS.gene25236:CDS | 50.0% | |
| GGATATCTCTCCTCTTCGTC+GGG | + | 51725:15949-15968 | MS.gene25236:CDS | 50.0% | |
| GGGGATTACATTGGAGCAAG+AGG | + | 51725:13242-13261 | MS.gene25236:CDS | 50.0% | |
| TCCTCTTCGTCGGGTTAATC+AGG | + | 51725:15958-15977 | MS.gene25236:CDS | 50.0% | |
| ! | ATTGGGGGCTGTTGATTGGT+TGG | + | 51725:14605-14624 | MS.gene25236:intron | 50.0% |
| !! | CCCGATTCGGATGAGTAAGT+AGG | - | 51725:13925-13944 | MS.gene25236:intergenic | 50.0% |
| !! | GGTACTCAAAGAAGCGCTTC+AGG | + | 51725:13303-13322 | MS.gene25236:CDS | 50.0% |
| !! | TGGGTTGATAGCCAGGATGA+TGG | + | 51725:15164-15183 | MS.gene25236:intron | 50.0% |
| AGTTGTTAGGAGGCAGGCTG+TGG | + | 51725:15928-15947 | MS.gene25236:CDS | 55.0% | |
| ATGGAGCTTCGACGACGTTC+AGG | + | 51725:12751-12770 | MS.gene25236:CDS | 55.0% | |
| CTGCCAAGGGTTCATCCAAC+AGG | + | 51725:16071-16090 | MS.gene25236:CDS | 55.0% | |
| GAACGTCGTCGAAGCTCCAT+TGG | - | 51725:12751-12770 | MS.gene25236:intergenic | 55.0% | |
| GAGTACCTACCAGCAGTGTG+AGG | - | 51725:13290-13309 | MS.gene25236:intergenic | 55.0% | |
| GCCTGATTAACCCGACGAAG+AGG | - | 51725:15962-15981 | MS.gene25236:intergenic | 55.0% | |
| GTGCCCGTGAAGCTGCATTT+AGG | + | 51725:16002-16021 | MS.gene25236:CDS | 55.0% | |
| TGCTGGAGTTGTTAGGAGGC+AGG | + | 51725:15922-15941 | MS.gene25236:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51725 | gene | 12680 | 16251 | 12680 | ID=MS.gene25236 |
| 51725 | mRNA | 12680 | 16251 | 12680 | ID=MS.gene25236.t1;Parent=MS.gene25236 |
| 51725 | exon | 12680 | 12772 | 12680 | ID=MS.gene25236.t1.exon1;Parent=MS.gene25236.t1 |
| 51725 | CDS | 12680 | 12772 | 12680 | ID=cds.MS.gene25236.t1;Parent=MS.gene25236.t1 |
| 51725 | exon | 13224 | 13495 | 13224 | ID=MS.gene25236.t1.exon2;Parent=MS.gene25236.t1 |
| 51725 | CDS | 13224 | 13495 | 13224 | ID=cds.MS.gene25236.t1;Parent=MS.gene25236.t1 |
| 51725 | exon | 15889 | 16092 | 15889 | ID=MS.gene25236.t1.exon3;Parent=MS.gene25236.t1 |
| 51725 | CDS | 15889 | 16092 | 15889 | ID=cds.MS.gene25236.t1;Parent=MS.gene25236.t1 |
| 51725 | exon | 16197 | 16251 | 16197 | ID=MS.gene25236.t1.exon4;Parent=MS.gene25236.t1 |
| 51725 | CDS | 16197 | 16251 | 16197 | ID=cds.MS.gene25236.t1;Parent=MS.gene25236.t1 |
| Gene Sequence |
| Protein sequence |
