AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034626

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034626.t1 MTR_1g054310 98.745 239 3 0 1 239 1 239 7.32e-178 488
MS.gene034626.t1 MTR_7g107380 96.500 200 5 1 40 239 9 206 7.70e-141 393
MS.gene034626.t1 MTR_0515s0010 88.462 78 9 0 76 153 3 80 7.36e-46 148
MS.gene034626.t1 MTR_0306s0010 88.462 78 9 0 76 153 3 80 7.36e-46 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034626.t1 AT2G37270 91.579 190 15 1 51 239 18 207 2.78e-128 361
MS.gene034626.t1 AT2G37270 91.579 190 15 1 51 239 18 207 2.78e-128 361
MS.gene034626.t1 AT3G11940 89.474 190 19 1 51 239 18 207 3.82e-126 356
MS.gene034626.t1 AT3G11940 89.474 190 19 1 51 239 18 207 3.82e-126 356

Find 55 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCAATGCACCAAAATT+AGG 0.162365 1.3:+39585979 MS.gene034626:CDS
GCATCAACAATGACCTGAAT+TGG 0.291343 1.3:-39586884 None:intergenic
CAGATTACTGATTTGTCTCT+TGG 0.315758 1.3:+39586647 MS.gene034626:intron
GATACTCGAAGAAGCGATTC+AGG 0.331607 1.3:+39586726 MS.gene034626:CDS
GAACCAATGCACCAAAATTA+GGG 0.331625 1.3:+39585980 MS.gene034626:CDS
AGCTTGACTTCGATCAGGTT+TGG 0.359219 1.3:-39586198 None:intergenic
CATTCTCAGCAGCTTCAGTT+TGG 0.372538 1.3:+39586026 MS.gene034626:CDS
CTGGAGCTTCGATGACGTTC+AGG 0.377509 1.3:+39586230 MS.gene034626:CDS
CAATGACCTGAATTGGGTTC+TGG 0.383650 1.3:-39586877 None:intergenic
GGATCTGAAACGACTGCAAC+AGG 0.391313 1.3:-39586177 None:intergenic
AACTGACCAGAACCCAATTC+AGG 0.407467 1.3:+39586871 MS.gene034626:CDS
AGATTACTGATTTGTCTCTT+GGG 0.409836 1.3:+39586648 MS.gene034626:intron
AATTGTCTTAATATTTCTAA+AGG 0.421513 1.3:-39588945 None:intergenic
CAAACTGAAGCTGCTGAGAA+TGG 0.431599 1.3:-39586025 None:intergenic
CGTGAAGATGCAACTCGTAT+TGG 0.440985 1.3:+39588824 MS.gene034626:CDS
TTGTTGATGCTGTCGTCAAC+AGG 0.441734 1.3:+39586897 MS.gene034626:CDS
GCCATCTATCTTCTAACTAC+TGG 0.451088 1.3:+39588908 MS.gene034626:CDS
GAACTTATTAATGCAGCAAA+AGG 0.453667 1.3:+39588986 MS.gene034626:CDS
TATGTGATAAACCCTAATTT+TGG 0.461034 1.3:-39585991 None:intergenic
GAACAATGGAAAGAAGCTTA+TGG 0.462961 1.3:+39586805 MS.gene034626:CDS
ACCAGTAGTTAGAAGATAGA+TGG 0.466476 1.3:-39588909 None:intergenic
ACATATGTTCCACACACTGC+TGG 0.470002 1.3:+39586701 MS.gene034626:CDS
TGAAGAGCTTGACTTCGATC+AGG 0.472581 1.3:-39586203 None:intergenic
TGGAACATATGTTGCATGCT+TGG 0.475316 1.3:-39586690 None:intergenic
GTTGCTAAGGCAAATCGTTA+AGG 0.480990 1.3:+39589168 MS.gene034626:CDS
GCAACTCGTATTGGTTCTGC+TGG 0.481223 1.3:+39588833 MS.gene034626:CDS
CAGCAAAAGGATCATCCAAC+AGG 0.484289 1.3:+39588999 MS.gene034626:CDS
AAGTCAAGCTCTTCAACCGC+TGG 0.503610 1.3:+39586211 MS.gene034626:CDS
CATCAACAATGACCTGAATT+GGG 0.506610 1.3:-39586883 None:intergenic
TGCTGAGAATGGAGAAGGTA+TGG 0.510821 1.3:-39586014 None:intergenic
TTGTCTCTTGGGGATTACAT+TGG 0.513322 1.3:+39586659 MS.gene034626:CDS
TGAAATTGAAAGAGTTGCTA+AGG 0.514135 1.3:+39589155 MS.gene034626:CDS
GATTACTGATTTGTCTCTTG+GGG 0.515005 1.3:+39586649 MS.gene034626:intron
GGCTTGATTCACACGACGAA+GGG 0.519901 1.3:-39588888 None:intergenic
TGCTGGAGTTGTAAGAAGAC+AGG 0.532743 1.3:+39588850 MS.gene034626:CDS
TTAGTGAGCCTCTCAACAAT+GGG 0.543323 1.3:-39586761 None:intergenic
TACGATCATCAAGCATGCTA+TGG 0.547047 1.3:+39586832 MS.gene034626:CDS
CTAACTCTCTCATGATGCAT+GGG 0.561374 1.3:+39586780 MS.gene034626:CDS
GTTAGTGAGCCTCTCAACAA+TGG 0.562680 1.3:-39586762 None:intergenic
ACTAACTCTCTCATGATGCA+TGG 0.563337 1.3:+39586779 MS.gene034626:CDS
AACCGTGATTGTGGTGGATG+CGG 0.564962 1.3:-39586052 None:intergenic
ATGATGCATGGGAGGAACAA+TGG 0.566550 1.3:+39586791 MS.gene034626:CDS
AGTTGTAAGAAGACAGGCTG+TGG 0.574582 1.3:+39588856 MS.gene034626:CDS
CTCAGTGTCCCATTGTTGAG+AGG 0.591866 1.3:+39586753 MS.gene034626:CDS
TTCTTCAATGACATCAGCCA+TGG 0.596830 1.3:-39586154 None:intergenic
TGCCGCATCCACCACAATCA+CGG 0.605390 1.3:+39586050 MS.gene034626:CDS
GAGTATCTTCCAGCAGTGTG+TGG 0.612438 1.3:-39586710 None:intergenic
GAAGCTGCTGAGAATGGAGA+AGG 0.628653 1.3:-39586019 None:intergenic
ACTCTCTCATGATGCATGGG+AGG 0.648954 1.3:+39586783 MS.gene034626:CDS
TGAACGAACCGTGATTGTGG+TGG 0.652757 1.3:-39586058 None:intergenic
AAATGAACGAACCGTGATTG+TGG 0.654236 1.3:-39586061 None:intergenic
GAACGTCATCGAAGCTCCAG+CGG 0.655762 1.3:-39586227 None:intergenic
TGGCTTGATTCACACGACGA+AGG 0.656812 1.3:-39588889 None:intergenic
GCTTGATTCACACGACGAAG+GGG 0.665666 1.3:-39588887 None:intergenic
ATACGAGTTGCATCTTCACG+AGG 0.709806 1.3:-39588821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTGTGAAATTT+TGG + chr1.3:39586502-39586521 MS.gene034626:intron 10.0%
!!! ATTTTTTTCTTTCAATTAAT+TGG + chr1.3:39586562-39586581 MS.gene034626:intron 10.0%
!!! TCAATTTTTATTTTATTTTC+TGG + chr1.3:39586986-39587005 MS.gene034626:intron 10.0%
!! AATTATGAAACAGTAATATT+TGG - chr1.3:39588747-39588766 None:intergenic 15.0%
!! AATTGAAAATAAAAATGAAC+TGG - chr1.3:39588157-39588176 None:intergenic 15.0%
!! AGATATTAAAAACAATTAAC+TGG - chr1.3:39587113-39587132 None:intergenic 15.0%
!! ATTGAAAATAAAAATGAACT+GGG - chr1.3:39588156-39588175 None:intergenic 15.0%
!! GTTATAATAAATAAACACTT+TGG + chr1.3:39587182-39587201 MS.gene034626:intron 15.0%
!! TAATATCTTATTAGATATTG+TGG + chr1.3:39587125-39587144 MS.gene034626:intron 15.0%
!!! AATTGTCTTAATATTTCTAA+AGG - chr1.3:39588948-39588967 None:intergenic 15.0%
!!! TAATATTAACTTTATTTAGC+TGG - chr1.3:39587944-39587963 None:intergenic 15.0%
!! AATCATAATTTCATTCATTG+AGG - chr1.3:39588467-39588486 None:intergenic 20.0%
!! AGTAATATTTGATTCATAAC+AGG - chr1.3:39588698-39588717 None:intergenic 20.0%
!! CATAAATAAACAATTGCAAT+TGG + chr1.3:39587518-39587537 MS.gene034626:intron 20.0%
!! TAGAAATCAATCAGAAATAT+GGG + chr1.3:39587800-39587819 MS.gene034626:intron 20.0%
!! TTAGAAATCAATCAGAAATA+TGG + chr1.3:39587799-39587818 MS.gene034626:intron 20.0%
!! TTCAATTTATAACAAGACTT+TGG + chr1.3:39588170-39588189 MS.gene034626:intron 20.0%
!!! AATTGGATTTTATTGTGTTT+TGG + chr1.3:39586423-39586442 MS.gene034626:intron 20.0%
!!! ATGAATAATTTGTATCCTAT+TGG + chr1.3:39588072-39588091 MS.gene034626:intron 20.0%
!!! ATGAATATTTGTTTTCCTAT+TGG + chr1.3:39587694-39587713 MS.gene034626:intron 20.0%
!!! CTGTTTCATAATTTTGAATT+TGG + chr1.3:39588754-39588773 MS.gene034626:intron 20.0%
!!! GTGTTTTTTGTTAATAATGT+TGG + chr1.3:39586604-39586623 MS.gene034626:intron 20.0%
!!! TTCTGTTTTTAGATTTTTTC+TGG + chr1.3:39587300-39587319 MS.gene034626:intron 20.0%
!!! TTTTATTTTCTGGTTTGATA+TGG + chr1.3:39586996-39587015 MS.gene034626:intron 20.0%
! AAACAATTAACTGGAATGAT+AGG - chr1.3:39587104-39587123 None:intergenic 25.0%
! ATCAAAACTCATGAAATGTA+AGG - chr1.3:39588286-39588305 None:intergenic 25.0%
! ATGAATATTTGTTTCCCTAT+TGG + chr1.3:39587344-39587363 MS.gene034626:intron 25.0%
! ATTCTCGTGTATTTATTGTT+TGG + chr1.3:39587650-39587669 MS.gene034626:intron 25.0%
! ATTTGATGTTAAACCTACTT+TGG + chr1.3:39588322-39588341 MS.gene034626:intron 25.0%
! GAAACTTAAAAGTTCATTAC+TGG - chr1.3:39587428-39587447 None:intergenic 25.0%
! TAAAACAAATTGCATCATTC+TGG - chr1.3:39587378-39587397 None:intergenic 25.0%
! TAGTTATTGTGATTGTGATT+AGG + chr1.3:39587274-39587293 MS.gene034626:intron 25.0%
! TGATATGTAAATAACAACCT+CGG - chr1.3:39588582-39588601 None:intergenic 25.0%
! TGTTTAACTGTTGCAATTTA+TGG + chr1.3:39588622-39588641 MS.gene034626:intron 25.0%
!! TATGTGATAAACCCTAATTT+TGG - chr1.3:39585994-39586013 None:intergenic 25.0%
!!! AATTTGGATCTGATTTGTTT+TGG + chr1.3:39588770-39588789 MS.gene034626:intron 25.0%
!!! AGATTTTTTCTGGTTTGATA+CGG + chr1.3:39587310-39587329 MS.gene034626:intron 25.0%
!!! ATGAATTTTTGTTTCCCTAT+TGG + chr1.3:39587030-39587049 MS.gene034626:intron 25.0%
!!! GATGTTTTTATGTACTTGTT+TGG + chr1.3:39588020-39588039 MS.gene034626:intron 25.0%
AAACGAAGAATGAGAAACAA+TGG - chr1.3:39586124-39586143 None:intergenic 30.0%
AATACAAAATGCCATCATTC+TGG - chr1.3:39587728-39587747 None:intergenic 30.0%
AATACAATTTGCCATCATTC+TGG - chr1.3:39588106-39588125 None:intergenic 30.0%
AGAAACAATGGATACAGAAA+AGG - chr1.3:39586112-39586131 None:intergenic 30.0%
ATTTCTATGTCTTTGTCTGT+TGG + chr1.3:39587212-39587231 MS.gene034626:intron 30.0%
CAACCACTTACAGTAATATT+TGG - chr1.3:39588526-39588545 None:intergenic 30.0%
CACGAGATGAAAAATATTCA+TGG - chr1.3:39589065-39589084 None:intergenic 30.0%
CTATGCTTAAAAACCAAAGT+AGG - chr1.3:39588338-39588357 None:intergenic 30.0%
GAACTTATTAATGCAGCAAA+AGG + chr1.3:39588986-39589005 MS.gene034626:CDS 30.0%
TAAAAATGAACTGGGAGATA+AGG - chr1.3:39588148-39588167 None:intergenic 30.0%
TGAAATTGAAAGAGTTGCTA+AGG + chr1.3:39589155-39589174 MS.gene034626:CDS 30.0%
TTACTGGAATGATATGAGAA+TGG - chr1.3:39587412-39587431 None:intergenic 30.0%
TTAGATACAAACAAATGACC+TGG - chr1.3:39587779-39587798 None:intergenic 30.0%
! ACAGTTAAACACAACACTTT+TGG - chr1.3:39588613-39588632 None:intergenic 30.0%
! ATGATTGGTTATTTCCCTAT+TGG + chr1.3:39588390-39588409 MS.gene034626:intron 30.0%
! ATTTGTAAAAGCATACCTGT+TGG - chr1.3:39589017-39589036 None:intergenic 30.0%
! CAAATTTTATACCTGTACAC+AGG + chr1.3:39589032-39589051 MS.gene034626:intron 30.0%
! CAGTTAAACACAACACTTTT+GGG - chr1.3:39588612-39588631 None:intergenic 30.0%
! TATGAATCGTTGATTGTTGA+TGG + chr1.3:39586920-39586939 MS.gene034626:intron 30.0%
!! AGATTACTGATTTGTCTCTT+GGG + chr1.3:39586648-39586667 MS.gene034626:intron 30.0%
!! ATTTATTGTTTGGCTTGGAA+TGG + chr1.3:39587660-39587679 MS.gene034626:intron 30.0%
!!! TATTTTCTGGTTTGATATGG+AGG + chr1.3:39586999-39587018 MS.gene034626:intron 30.0%
AACAAATGACCTGGAATGTT+AGG - chr1.3:39587770-39587789 None:intergenic 35.0%
ACCAGTAGTTAGAAGATAGA+TGG - chr1.3:39588912-39588931 None:intergenic 35.0%
AGAACAGTGACAATTGTAGT+TGG + chr1.3:39588356-39588375 MS.gene034626:intron 35.0%
ATACATAAATGCCATCATCC+AGG - chr1.3:39588424-39588443 None:intergenic 35.0%
ATGACTAGTAATGACTGTTG+AGG + chr1.3:39587455-39587474 MS.gene034626:intron 35.0%
CAAGAGACAAATCAGTAATC+TGG - chr1.3:39586649-39586668 None:intergenic 35.0%
CATCAACAATGACCTGAATT+GGG - chr1.3:39586886-39586905 None:intergenic 35.0%
CGTGTATTTATTGTTTGGCT+TGG + chr1.3:39587655-39587674 MS.gene034626:intron 35.0%
GAACAATGGAAAGAAGCTTA+TGG + chr1.3:39586805-39586824 MS.gene034626:CDS 35.0%
GAACCAATGCACCAAAATTA+GGG + chr1.3:39585980-39585999 MS.gene034626:CDS 35.0%
GACATGTCAAGAAAAGCAAA+AGG - chr1.3:39588676-39588695 None:intergenic 35.0%
GCACCAAATATTACTGTAAG+TGG + chr1.3:39588520-39588539 MS.gene034626:intron 35.0%
TAACTGGAATGATAGGAGAA+TGG - chr1.3:39587097-39587116 None:intergenic 35.0%
TGAACCAATGCACCAAAATT+AGG + chr1.3:39585979-39585998 MS.gene034626:CDS 35.0%
TTGGAGAATGACATGATGAT+TGG + chr1.3:39588375-39588394 MS.gene034626:intron 35.0%
!! AAACCCTAATTTTGGTGCAT+TGG - chr1.3:39585986-39586005 None:intergenic 35.0%
!! CAGATTACTGATTTGTCTCT+TGG + chr1.3:39586647-39586666 MS.gene034626:intron 35.0%
!! GATTACTGATTTGTCTCTTG+GGG + chr1.3:39586649-39586668 MS.gene034626:intron 35.0%
!! GTGTTTGTGTACTTTTTGTC+TGG + chr1.3:39587579-39587598 MS.gene034626:intron 35.0%
!! TGTGTACTTTTTGTCTGGTT+TGG + chr1.3:39587584-39587603 MS.gene034626:intron 35.0%
!!! ACTTTTTGTCTGGTTTGGAA+TGG + chr1.3:39587589-39587608 MS.gene034626:intron 35.0%
AAATGAACGAACCGTGATTG+TGG - chr1.3:39586064-39586083 None:intergenic 40.0%
AAATGAACTGGGAGATAAGG+TGG - chr1.3:39588145-39588164 None:intergenic 40.0%
ACAATTTGCCATCATTCTGG+CGG - chr1.3:39588103-39588122 None:intergenic 40.0%
ACTAACTCTCTCATGATGCA+TGG + chr1.3:39586779-39586798 MS.gene034626:CDS 40.0%
ACTCTTGCAGTCAAACCAAT+AGG - chr1.3:39587048-39587067 None:intergenic 40.0%
ATCCAGGCAATCAATCCAAT+AGG - chr1.3:39588408-39588427 None:intergenic 40.0%
ATTCTGGCAGTCAAACCAAT+AGG - chr1.3:39587362-39587381 None:intergenic 40.0%
CCAACAACATCTTCTGCAAA+GGG - chr1.3:39588242-39588261 None:intergenic 40.0%
CGAAGATTCGAAGAATCTGA+AGG - chr1.3:39586087-39586106 None:intergenic 40.0%
CTAACTCTCTCATGATGCAT+GGG + chr1.3:39586780-39586799 MS.gene034626:CDS 40.0%
CTCTTGCAGTCAAACCAATA+GGG - chr1.3:39587047-39587066 None:intergenic 40.0%
GCATCAACAATGACCTGAAT+TGG - chr1.3:39586887-39586906 None:intergenic 40.0%
GCCATCTATCTTCTAACTAC+TGG + chr1.3:39588908-39588927 MS.gene034626:CDS 40.0%
TACGATCATCAAGCATGCTA+TGG + chr1.3:39586832-39586851 MS.gene034626:CDS 40.0%
TATGTACTTGTTTGGCACTC+TGG + chr1.3:39588028-39588047 MS.gene034626:intron 40.0%
TCCAACAACATCTTCTGCAA+AGG - chr1.3:39588243-39588262 None:intergenic 40.0%
TCCAGGCAATCAATCCAATA+GGG - chr1.3:39588407-39588426 None:intergenic 40.0%
TGGAACATATGTTGCATGCT+TGG - chr1.3:39586693-39586712 None:intergenic 40.0%
TTAGTGAGCCTCTCAACAAT+GGG - chr1.3:39586764-39586783 None:intergenic 40.0%
TTCTGGCAGTCAAACCAATA+GGG - chr1.3:39587361-39587380 None:intergenic 40.0%
TTCTTCAATGACATCAGCCA+TGG - chr1.3:39586157-39586176 None:intergenic 40.0%
TTGTCTCTTGGGGATTACAT+TGG + chr1.3:39586659-39586678 MS.gene034626:CDS 40.0%
!! CGCTTGTGTCATTTGTATAG+TGG + chr1.3:39588797-39588816 MS.gene034626:intron 40.0%
!! TATTGTTTGGCTTGGAATGG+AGG + chr1.3:39587663-39587682 MS.gene034626:intron 40.0%
!! TTCTGGTTTGATACGGAGAA+TGG + chr1.3:39587317-39587336 MS.gene034626:intron 40.0%
!! TTCTGGTTTGATATGGAGGA+TGG + chr1.3:39587003-39587022 MS.gene034626:intron 40.0%
!!! TTTTGTCTGGTTTGGAATGG+TGG + chr1.3:39587592-39587611 MS.gene034626:intron 40.0%
AACTGACCAGAACCCAATTC+AGG + chr1.3:39586871-39586890 MS.gene034626:CDS 45.0%
ACATATGTTCCACACACTGC+TGG + chr1.3:39586701-39586720 MS.gene034626:CDS 45.0%
AGCTTGACTTCGATCAGGTT+TGG - chr1.3:39586201-39586220 None:intergenic 45.0%
AGTTGTAAGAAGACAGGCTG+TGG + chr1.3:39588856-39588875 MS.gene034626:CDS 45.0%
ATACGAGTTGCATCTTCACG+AGG - chr1.3:39588824-39588843 None:intergenic 45.0%
ATGATGCATGGGAGGAACAA+TGG + chr1.3:39586791-39586810 MS.gene034626:CDS 45.0%
ATTCTGGCGGTCAAACCAAT+AGG - chr1.3:39588090-39588109 None:intergenic 45.0%
CAAACTGAAGCTGCTGAGAA+TGG - chr1.3:39586028-39586047 None:intergenic 45.0%
CAATGACCTGAATTGGGTTC+TGG - chr1.3:39586880-39586899 None:intergenic 45.0%
CAGCAAAAGGATCATCCAAC+AGG + chr1.3:39588999-39589018 MS.gene034626:CDS 45.0%
CATTCTCAGCAGCTTCAGTT+TGG + chr1.3:39586026-39586045 MS.gene034626:CDS 45.0%
CCCTTTGCAGAAGATGTTGT+TGG + chr1.3:39588239-39588258 MS.gene034626:intron 45.0%
CGGAAAATACACAGCTAGCA+TGG - chr1.3:39588562-39588581 None:intergenic 45.0%
CGTGAAGATGCAACTCGTAT+TGG + chr1.3:39588824-39588843 MS.gene034626:CDS 45.0%
GACCATTCTCCTAACATTCC+AGG + chr1.3:39587758-39587777 MS.gene034626:intron 45.0%
GACCTGGAATGTTAGGAGAA+TGG - chr1.3:39587763-39587782 None:intergenic 45.0%
GATACTCGAAGAAGCGATTC+AGG + chr1.3:39586726-39586745 MS.gene034626:CDS 45.0%
GTTAGTGAGCCTCTCAACAA+TGG - chr1.3:39586765-39586784 None:intergenic 45.0%
TCCCTATTGGATTGATTGCC+TGG + chr1.3:39588403-39588422 MS.gene034626:intron 45.0%
TGAAGAGCTTGACTTCGATC+AGG - chr1.3:39586206-39586225 None:intergenic 45.0%
TGCTGAGAATGGAGAAGGTA+TGG - chr1.3:39586017-39586036 None:intergenic 45.0%
TGCTGGAGTTGTAAGAAGAC+AGG + chr1.3:39588850-39588869 MS.gene034626:CDS 45.0%
TGGATTGATTGCCTGGATGA+TGG + chr1.3:39588410-39588429 MS.gene034626:intron 45.0%
TGGTTTGACTGCCAGAATGA+TGG + chr1.3:39587364-39587383 MS.gene034626:intron 45.0%
TTCGTTTCTCTATGCAGCCA+TGG + chr1.3:39586137-39586156 MS.gene034626:intron 45.0%
TTGTTGATGCTGTCGTCAAC+AGG + chr1.3:39586897-39586916 MS.gene034626:CDS 45.0%
! TGCTAGCTGTGTATTTTCCG+AGG + chr1.3:39588562-39588581 MS.gene034626:intron 45.0%
!! CTCTGGCTTGATTTGTAGGA+TGG + chr1.3:39588045-39588064 MS.gene034626:intron 45.0%
!!! TTTTTTTTATTTCAATTAAT+TGG + chr1.3:39586406-39586425 MS.gene034626:intron 5.0%
AAGTCAAGCTCTTCAACCGC+TGG + chr1.3:39586211-39586230 MS.gene034626:CDS 50.0%
ACTCTCTCATGATGCATGGG+AGG + chr1.3:39586783-39586802 MS.gene034626:CDS 50.0%
ATGGAAGACTGCCTGTGTAC+AGG - chr1.3:39589046-39589065 None:intergenic 50.0%
CTCAGTGTCCCATTGTTGAG+AGG + chr1.3:39586753-39586772 MS.gene034626:CDS 50.0%
GAACTGGGAGATAAGGTGGA+TGG - chr1.3:39588141-39588160 None:intergenic 50.0%
GAAGCTGCTGAGAATGGAGA+AGG - chr1.3:39586022-39586041 None:intergenic 50.0%
GAGTATCTTCCAGCAGTGTG+TGG - chr1.3:39586713-39586732 None:intergenic 50.0%
GCTTGATTCACACGACGAAG+GGG - chr1.3:39588890-39588909 None:intergenic 50.0%
GGCTTGATTCACACGACGAA+GGG - chr1.3:39588891-39588910 None:intergenic 50.0%
TGAACGAACCGTGATTGTGG+TGG - chr1.3:39586061-39586080 None:intergenic 50.0%
TGGCTTGATTCACACGACGA+AGG - chr1.3:39588892-39588911 None:intergenic 50.0%
TGGTTTGACCGCCAGAATGA+TGG + chr1.3:39588092-39588111 MS.gene034626:intron 50.0%
! GGATCTGAAACGACTGCAAC+AGG - chr1.3:39586180-39586199 None:intergenic 50.0%
!! AACCGTGATTGTGGTGGATG+CGG - chr1.3:39586055-39586074 None:intergenic 50.0%
!! GCAACTCGTATTGGTTCTGC+TGG + chr1.3:39588833-39588852 MS.gene034626:CDS 50.0%
!! GGCACTCTGGCTTGATTTGT+AGG + chr1.3:39588041-39588060 MS.gene034626:intron 50.0%
!! GTTTGGCTTGGAATGGAGGA+TGG + chr1.3:39587667-39587686 MS.gene034626:intron 50.0%
CTGGAGCTTCGATGACGTTC+AGG + chr1.3:39586230-39586249 MS.gene034626:CDS 55.0%
GAACGTCATCGAAGCTCCAG+CGG - chr1.3:39586230-39586249 None:intergenic 55.0%
TGCCGCATCCACCACAATCA+CGG + chr1.3:39586050-39586069 MS.gene034626:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 39585978 39589188 39585978 ID=MS.gene034626
chr1.3 mRNA 39585978 39589188 39585978 ID=MS.gene034626.t1;Parent=MS.gene034626
chr1.3 exon 39585978 39586071 39585978 ID=MS.gene034626.t1.exon1;Parent=MS.gene034626.t1
chr1.3 CDS 39585978 39586071 39585978 ID=cds.MS.gene034626.t1;Parent=MS.gene034626.t1
chr1.3 exon 39586154 39586251 39586154 ID=MS.gene034626.t1.exon2;Parent=MS.gene034626.t1
chr1.3 CDS 39586154 39586251 39586154 ID=cds.MS.gene034626.t1;Parent=MS.gene034626.t1
chr1.3 exon 39586650 39586918 39586650 ID=MS.gene034626.t1.exon3;Parent=MS.gene034626.t1
chr1.3 CDS 39586650 39586918 39586650 ID=cds.MS.gene034626.t1;Parent=MS.gene034626.t1
chr1.3 exon 39588817 39589020 39588817 ID=MS.gene034626.t1.exon4;Parent=MS.gene034626.t1
chr1.3 CDS 39588817 39589020 39588817 ID=cds.MS.gene034626.t1;Parent=MS.gene034626.t1
chr1.3 exon 39589134 39589188 39589134 ID=MS.gene034626.t1.exon5;Parent=MS.gene034626.t1
chr1.3 CDS 39589134 39589188 39589134 ID=cds.MS.gene034626.t1;Parent=MS.gene034626.t1
Gene Sequence

>MS.gene034626

ATGAACCAATGCACCAAAATTAGGGTTTATCACATACCATACCTTCTCCATTCTCAGCAGCTTCAGTTTGGTTGCCGCATCCACCACAATCACGGTTCGTTCATTTCCTTCAGATTCTTCGAATCTTCGTACCTTTTCTGTATCCATTGTTTCTCATTCTTCGTTTCTCTATGCAGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGGTAATTTTTTCACATTTCTTCAATTTCATCTCAGATTTCGTTTTTTAATTACTTTTGAACAATCTATTAGTTTAAATTAATACTTAATTACTCTGTTTGAAATGTGTAATAATTTCTGTTTTTTTGTTTGTTGAAATTTTGATATACTGCAATATTTTTTTTATTTCAATTAATTGGATTTTATTGTGTTTTGGTAATTAAAAAAATGTTGTGATTAGTTTAAACTAATACTACTTAATTAGTTTACTGCAATTTTTTTTTGTGAAATTTTGGTTGTGCTGTTTTAGCTATATGAAATTAGTTTACTGCAATTTTTTTCTTTCAATTAATTGGTTTTTGTGTTAGTTATATTGTGTTTTTTGTTAATAATGTTGGAATTTTGATTTTGATTGTACCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAGCATGCAACATATGTTCCACACACTGCTGGAAGATACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCTGTTACGATCATCAAGCATGCTATGGAGATTATTCATTTGTTAACTGACCAGAACCCAATTCAGGTCATTGTTGATGCTGTCGTCAACAGGTATGAATCGTTGATTGTTGATGGCTGTAGAAATTTGAGTTTGATATTGTAAAATTGTTGATGTTTTTCAATTTTTATTTTATTTTCTGGTTTGATATGGAGGATGGAGTGATGAATTTTTGTTTCCCTATTGGTTTGACTGCAAGAGTGATGCAATTTTATTAGAACTATCTGACCATTCTCCTATCATTCCAGTTAATTGTTTTTAATATCTTATTAGATATTGTGGTTTCTTATGAAGATAAACACATAATTAAGTGCAAGTTATAATAAATAAACACTTTGGAAATACTATTTCTATGTCTTTGTCTGTTGGAAATTTGAGTTTGATATTGTGAGATTTGTCTTATGTATGTAGTTATTGTGATTGTGATTAGGTTGTTCTGTTTTTAGATTTTTTCTGGTTTGATACGGAGAATGGAATGATGAATATTTGTTTCCCTATTGGTTTGACTGCCAGAATGATGCAATTTGTTTTAGAACTATCTGACCATTCTCATATCATTCCAGTAATGAACTTTTAAGTTTCACTAGTGATGACTAGTAATGACTGTTGAGGAGATTGAAAAGAAACACTTCAGTAATTAAGTATAAGTTAACATAAATAAACAATTGCAATTGGTCTTTTCATACTATAGTGTAAATGATTTTAATTTAATTGTGTTTGTGTACTTTTTGTCTGGTTTGGAATGGTGGATATCAAAAGTGTAAATGATTTTAATTCAATTGACATTCTCGTGTATTTATTGTTTGGCTTGGAATGGAGGATGGAGTGATGAATATTTGTTTTCCTATTGGTTTGACTGCCAGAATGATGGCATTTTGTATTAGCTCTATCTGACCATTCTCCTAACATTCCAGGTCATTTGTTTGTATCTAATTAGAAATCAATCAGAAATATGGGTTTTAACATGAAAATGACTGACTTGTCATGTTTCTAAATTAGTCAGCATTATCAAAGATATTGAAAAGAAAGACTTAGCTAAATAAAGTTAATGTTGTAAACGATATTAAAAAGAAAGCCAGCTAAATAAAGTTAATATTACGAATAAACTTTTGCAATTTTCTTATCAAGCAAGTGTGAATGATTTGAATTTGTATGATGTTTTTATGTACTTGTTTGGCACTCTGGCTTGATTTGTAGGATGGAGTGATGAATAATTTGTATCCTATTGGTTTGACCGCCAGAATGATGGCAAATTGTATTAGCTCTATCTGACCATCCACCTTATCTCCCAGTTCATTTTTATTTTCAATTTATAACAAGACTTTGGTGCTCTGTTTTTGTTTTTGCTTTTTTTTTTCTTTCAAAAAATAGAACCCTTTGCAGAAGATGTTGTTGGATCATAACATCTTTTGTGATGCCTTACATTTCATGAGTTTTGATTTTTTGTGCTCTTTTGATTTGATGTTAAACCTACTTTGGTTTTTAAGCATAGAACAGTGACAATTGTAGTTGGAGAATGACATGATGATTGGTTATTTCCCTATTGGATTGATTGCCTGGATGATGGCATTTATGTATTAGCTCTATCTGATCATTCTCCTCAATGAATGAAATTATGATTGTTTTTGTCTATTTAATTAATCAACGACATTCTGCACCAAATATTACTGTAAGTGGTTGTTTCTTAAATATGCCATGCTAGCTGTGTATTTTCCGAGGTTGTTATTTACATATCACAATGTACCCAAAAGTGTTGTGTTTAACTGTTGCAATTTATGGTCAGTTCATGTTTCATAAGAATATGCTACCTTTTGCTTTTCTTGACATGTCCTGTTATGAATCAAATATTACTGTTTTCTTGACATGCTCTGTTATGAACCAAATATTACTGTTTCATAATTTTGAATTTGGATCTGATTTGTTTTGGTATGCGCTTGTGTCATTTGTATAGTGGTCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCGCGTGAAGCAGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGGTATGCTTTTACAAATTTTATACCTGTACACAGGCAGTCTTCCATGAATATTTTTCATCTCGTGTTTTAGTCTTTTTAATTCTGTTAATGATAAATTCTATTATCTCTTTCAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA
Protein sequence

>MS.gene034626.t1

MNQCTKIRVYHIPYLLHSQQLQFGCRIHHNHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVTIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR