Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007330.t1 | RHN48604.1 | 97.6 | 296 | 7 | 0 | 1 | 296 | 73 | 368 | 1.90E-173 | 618.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007330.t1 | Q9LF92 | 69.2 | 299 | 88 | 3 | 1 | 296 | 1 | 298 | 4.9e-125 | 448.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007330.t1 | A0A072U2Z8 | 97.6 | 296 | 7 | 0 | 1 | 296 | 1 | 296 | 1.4e-173 | 618.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007330 | MS.gene033388 | PPI |
| MS.gene007330 | MS.gene011426 | PPI |
| MS.gene007330 | MS.gene72988 | PPI |
| MS.gene015544 | MS.gene007330 | PPI |
| MS.gene007330 | MS.gene20125 | PPI |
| MS.gene007330 | MS.gene072814 | PPI |
| MS.gene22617 | MS.gene007330 | PPI |
| MS.gene007330 | MS.gene015546 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007330.t1 | MTR_7g103380 | 97.635 | 296 | 7 | 0 | 1 | 296 | 1 | 296 | 0.0 | 605 |
| MS.gene007330.t1 | MTR_5g010800 | 54.983 | 291 | 116 | 4 | 1 | 290 | 1 | 277 | 2.61e-112 | 326 |
| MS.gene007330.t1 | MTR_4g102770 | 57.143 | 273 | 105 | 2 | 19 | 290 | 19 | 280 | 1.78e-109 | 319 |
| MS.gene007330.t1 | MTR_1g101390 | 52.685 | 298 | 121 | 2 | 1 | 289 | 1 | 287 | 4.83e-109 | 318 |
| MS.gene007330.t1 | MTR_0002s0020 | 53.767 | 292 | 116 | 3 | 1 | 284 | 1 | 281 | 7.30e-108 | 315 |
| MS.gene007330.t1 | MTR_0113s0040 | 47.260 | 292 | 140 | 2 | 1 | 289 | 1 | 281 | 4.69e-98 | 290 |
| MS.gene007330.t1 | MTR_7g112560 | 31.618 | 272 | 157 | 8 | 22 | 283 | 4 | 256 | 9.67e-34 | 124 |
| MS.gene007330.t1 | MTR_4g023570 | 31.086 | 267 | 153 | 7 | 22 | 287 | 4 | 240 | 2.25e-32 | 120 |
| MS.gene007330.t1 | MTR_1g079370 | 26.354 | 277 | 176 | 6 | 19 | 283 | 4 | 264 | 3.00e-30 | 115 |
| MS.gene007330.t1 | MTR_1g100597 | 26.241 | 282 | 173 | 6 | 21 | 283 | 6 | 271 | 9.62e-29 | 111 |
| MS.gene007330.t1 | MTR_1g079260 | 26.481 | 287 | 176 | 6 | 18 | 285 | 3 | 273 | 1.99e-28 | 110 |
| MS.gene007330.t1 | MTR_1g083580 | 25.862 | 290 | 175 | 8 | 18 | 283 | 7 | 280 | 4.09e-27 | 107 |
| MS.gene007330.t1 | MTR_1g079180 | 25.818 | 275 | 176 | 7 | 21 | 283 | 6 | 264 | 5.64e-27 | 106 |
| MS.gene007330.t1 | MTR_1g079200 | 26.715 | 277 | 170 | 11 | 21 | 283 | 6 | 263 | 2.59e-26 | 104 |
| MS.gene007330.t1 | MTR_1g079460 | 24.727 | 275 | 184 | 6 | 21 | 285 | 6 | 267 | 4.70e-26 | 103 |
| MS.gene007330.t1 | MTR_1g079140 | 37.762 | 143 | 86 | 2 | 21 | 160 | 15 | 157 | 1.07e-25 | 103 |
| MS.gene007330.t1 | MTR_1g079380 | 26.715 | 277 | 175 | 7 | 19 | 283 | 4 | 264 | 2.29e-25 | 102 |
| MS.gene007330.t1 | MTR_7g112550 | 24.742 | 291 | 180 | 7 | 18 | 283 | 6 | 282 | 1.08e-24 | 100 |
| MS.gene007330.t1 | MTR_1g079230 | 24.823 | 282 | 178 | 6 | 21 | 283 | 6 | 272 | 8.11e-24 | 98.2 |
| MS.gene007330.t1 | MTR_1g100613 | 26.971 | 241 | 140 | 5 | 35 | 253 | 5 | 231 | 1.99e-23 | 96.7 |
| MS.gene007330.t1 | MTR_3g452600 | 25.182 | 274 | 179 | 5 | 19 | 283 | 10 | 266 | 4.88e-22 | 93.2 |
| MS.gene007330.t1 | MTR_1g079850 | 24.490 | 294 | 176 | 8 | 21 | 285 | 6 | 282 | 5.84e-21 | 90.5 |
| MS.gene007330.t1 | MTR_1g079400 | 32.414 | 145 | 95 | 2 | 22 | 163 | 15 | 159 | 5.13e-20 | 87.8 |
| MS.gene007330.t1 | MTR_1g079410 | 31.757 | 148 | 92 | 3 | 22 | 163 | 11 | 155 | 2.09e-19 | 86.3 |
| MS.gene007330.t1 | MTR_3g450990 | 24.286 | 280 | 190 | 7 | 19 | 283 | 10 | 282 | 2.62e-17 | 80.5 |
| MS.gene007330.t1 | MTR_1g079250 | 25.965 | 285 | 180 | 8 | 21 | 285 | 6 | 279 | 5.25e-16 | 77.0 |
| MS.gene007330.t1 | MTR_7g096300 | 24.830 | 294 | 179 | 7 | 21 | 290 | 6 | 281 | 5.25e-15 | 75.5 |
| MS.gene007330.t1 | MTR_2g079100 | 23.466 | 277 | 176 | 8 | 18 | 281 | 8 | 261 | 1.48e-14 | 72.4 |
| MS.gene007330.t1 | MTR_1g079350 | 24.514 | 257 | 158 | 8 | 18 | 253 | 3 | 244 | 8.57e-14 | 70.5 |
| MS.gene007330.t1 | MTR_3g006850 | 22.685 | 216 | 141 | 5 | 21 | 223 | 19 | 221 | 8.02e-13 | 68.2 |
| MS.gene007330.t1 | MTR_1g078470 | 26.667 | 180 | 101 | 6 | 115 | 283 | 24 | 183 | 1.02e-11 | 63.2 |
| MS.gene007330.t1 | MTR_1g079350 | 30.882 | 136 | 84 | 5 | 18 | 146 | 3 | 135 | 3.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007330.t1 | AT3G53000 | 69.231 | 299 | 88 | 3 | 1 | 296 | 1 | 298 | 3.43e-155 | 435 |
| MS.gene007330.t1 | AT3G61060 | 56.554 | 267 | 106 | 1 | 19 | 285 | 25 | 281 | 2.96e-110 | 321 |
| MS.gene007330.t1 | AT3G61060 | 56.716 | 268 | 105 | 2 | 19 | 285 | 25 | 282 | 5.77e-109 | 318 |
| MS.gene007330.t1 | AT1G12710 | 52.475 | 303 | 114 | 5 | 1 | 289 | 1 | 287 | 1.34e-106 | 312 |
| MS.gene007330.t1 | AT1G63090 | 51.916 | 287 | 125 | 3 | 4 | 289 | 11 | 285 | 3.43e-98 | 290 |
| MS.gene007330.t1 | AT1G12710 | 46.087 | 345 | 114 | 6 | 1 | 289 | 1 | 329 | 4.26e-98 | 292 |
| MS.gene007330.t1 | AT5G52120 | 45.455 | 297 | 136 | 3 | 8 | 289 | 1 | 286 | 1.66e-90 | 271 |
| MS.gene007330.t1 | AT2G02360 | 26.667 | 270 | 176 | 7 | 23 | 286 | 18 | 271 | 1.16e-27 | 108 |
| MS.gene007330.t1 | AT2G02340 | 27.425 | 299 | 178 | 10 | 9 | 287 | 26 | 305 | 6.00e-27 | 107 |
| MS.gene007330.t1 | AT2G02240 | 26.599 | 297 | 180 | 9 | 5 | 285 | 44 | 318 | 2.92e-26 | 105 |
| MS.gene007330.t1 | AT2G02230 | 36.424 | 151 | 88 | 3 | 14 | 162 | 27 | 171 | 8.08e-26 | 105 |
| MS.gene007330.t1 | AT1G09155 | 26.846 | 298 | 177 | 10 | 22 | 291 | 3 | 287 | 4.53e-25 | 102 |
| MS.gene007330.t1 | AT1G80110 | 23.810 | 273 | 182 | 5 | 19 | 283 | 1 | 255 | 2.28e-23 | 96.7 |
| MS.gene007330.t1 | AT2G02250 | 34.395 | 157 | 96 | 4 | 10 | 163 | 36 | 188 | 5.17e-23 | 96.7 |
| MS.gene007330.t1 | AT5G24560 | 32.143 | 140 | 91 | 1 | 21 | 160 | 5 | 140 | 3.63e-22 | 92.0 |
| MS.gene007330.t1 | AT2G02350 | 30.464 | 151 | 100 | 3 | 10 | 159 | 15 | 161 | 6.14e-22 | 93.6 |
| MS.gene007330.t1 | AT2G02310 | 25.714 | 280 | 176 | 9 | 21 | 287 | 47 | 307 | 5.04e-21 | 91.3 |
| MS.gene007330.t1 | AT1G56240 | 25.170 | 294 | 179 | 7 | 22 | 287 | 4 | 284 | 1.95e-20 | 89.4 |
| MS.gene007330.t1 | AT1G56250 | 25.172 | 290 | 176 | 7 | 22 | 283 | 4 | 280 | 6.84e-20 | 87.8 |
| MS.gene007330.t1 | AT2G02320 | 24.579 | 297 | 188 | 10 | 4 | 285 | 25 | 300 | 6.49e-19 | 85.5 |
| MS.gene007330.t1 | AT2G02300 | 33.117 | 154 | 96 | 4 | 11 | 163 | 28 | 175 | 5.49e-17 | 79.7 |
| MS.gene007330.t1 | AT4G19840 | 30.603 | 232 | 124 | 11 | 62 | 285 | 44 | 246 | 1.18e-12 | 67.0 |
Find 74 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGCGAAAATATCTTTCT+TGG | 0.244190 | 7.4:+7880418 | None:intergenic |
| GCGAAAGGTTTGTCTATTAC+TGG | 0.248170 | 7.4:-7880224 | MS.gene007330:CDS |
| CTGCTTCCGCTGATTCCGTT+TGG | 0.279164 | 7.4:-7880514 | MS.gene007330:CDS |
| TGCTTCCGCTGATTCCGTTT+GGG | 0.281862 | 7.4:-7880513 | MS.gene007330:CDS |
| CTAACTATCAACATCTTCTA+AGG | 0.282361 | 7.4:-7880475 | MS.gene007330:CDS |
| TTCCGACAGCGTAGTTCTTC+GGG | 0.292375 | 7.4:+7880446 | None:intergenic |
| TAGCATATTTGCAGCAAATA+TGG | 0.292809 | 7.4:-7878425 | MS.gene007330:CDS |
| TTGTGGCTTGATAGGGTTAC+TGG | 0.305604 | 7.4:-7880269 | MS.gene007330:CDS |
| ATAATTATACTCTCTCCTTT+AGG | 0.320102 | 7.4:-7878359 | MS.gene007330:CDS |
| GGTGCTTCGTTGTCGAATCT+TGG | 0.327372 | 7.4:-7880665 | MS.gene007330:CDS |
| ATTCCGACAGCGTAGTTCTT+CGG | 0.334823 | 7.4:+7880445 | None:intergenic |
| TTTGATCCCAACCATGGGTT+TGG | 0.336939 | 7.4:+7878283 | None:intergenic |
| TACGCGCCGACCGAGTCTTT+TGG | 0.340105 | 7.4:+7878317 | None:intergenic |
| TAGGATTTGCATGTCAATTT+CGG | 0.348575 | 7.4:-7880246 | MS.gene007330:CDS |
| GCAATCATAAGCGTGGATAT+TGG | 0.361605 | 7.4:-7878170 | MS.gene007330:CDS |
| CAATCATAAGCGTGGATATT+GGG | 0.364455 | 7.4:-7878169 | MS.gene007330:CDS |
| TGCAGCAATTGTGGCTTGAT+AGG | 0.373892 | 7.4:-7880277 | MS.gene007330:intron |
| ACCGTTTGATGATGGTAATA+AGG | 0.383826 | 7.4:-7880381 | MS.gene007330:intron |
| TGTACAGTCAATCTGTTTCA+TGG | 0.389000 | 7.4:+7878083 | None:intergenic |
| GAATTGATGATCGGAGATAC+TGG | 0.406343 | 7.4:-7880202 | MS.gene007330:CDS |
| AGAAGATGTTGATAGTTAGA+AGG | 0.406652 | 7.4:+7880479 | None:intergenic |
| TCAGGGATGTCGCCGAGACT+TGG | 0.421026 | 7.4:+7880620 | None:intergenic |
| GGGTTCCTACTGAAGAATCT+AGG | 0.427818 | 7.4:-7880175 | MS.gene007330:intron |
| GTATAATTATCAGCAGGAAA+TGG | 0.451382 | 7.4:+7878372 | None:intergenic |
| GCGAGCTAAGTTACAAATCT+CGG | 0.453621 | 7.4:+7880559 | None:intergenic |
| GTAGGTGAGTTTATTGTGAC+TGG | 0.455214 | 7.4:-7878135 | MS.gene007330:CDS |
| GCTGTCAACTTCAGATGGTC+AGG | 0.460205 | 7.4:-7878244 | MS.gene007330:CDS |
| ATGATCGGAGATACTGGACT+TGG | 0.466267 | 7.4:-7880196 | MS.gene007330:CDS |
| CTCTCCTTTAGGCTTCACCT+TGG | 0.478658 | 7.4:-7878348 | MS.gene007330:CDS |
| AGCATCATCTGAGTGCTGCT+TGG | 0.485935 | 7.4:-7878220 | MS.gene007330:CDS |
| GCAGCAATTGTGGCTTGATA+GGG | 0.487718 | 7.4:-7880276 | MS.gene007330:intron |
| GTTGACAGCTTAAATATGAC+TGG | 0.492659 | 7.4:+7878258 | None:intergenic |
| TTACCATCATCAAACGGTAA+AGG | 0.493520 | 7.4:+7880386 | None:intergenic |
| TGGAGCGATGGTTGAACCGT+TGG | 0.500130 | 7.4:+7880640 | None:intergenic |
| AAACCTTTACCGTTTGATGA+TGG | 0.507236 | 7.4:-7880389 | MS.gene007330:CDS |
| TGCATGTCAATTTCGGCGAA+AGG | 0.507247 | 7.4:-7880239 | MS.gene007330:CDS |
| CTATGACCAAACCCATGGTT+GGG | 0.510948 | 7.4:-7878289 | MS.gene007330:CDS |
| CGAGCTAAGTTACAAATCTC+GGG | 0.515282 | 7.4:+7880560 | None:intergenic |
| TCAACCATCGCTCCAAGTCT+CGG | 0.520611 | 7.4:-7880632 | MS.gene007330:CDS |
| ATTGACTGTACACATTCAAA+AGG | 0.523702 | 7.4:-7878072 | MS.gene007330:CDS |
| TTGAGAGACCGCAAGGGAGG+CGG | 0.525474 | 7.4:-7878009 | MS.gene007330:CDS |
| ATATGGTGGTTTGAAGTGGA+TGG | 0.529067 | 7.4:-7878408 | MS.gene007330:CDS |
| TATGGTGGTTTGAAGTGGAT+GGG | 0.530496 | 7.4:-7878407 | MS.gene007330:CDS |
| GAGAGAGTATAATTATCAGC+AGG | 0.530526 | 7.4:+7878366 | None:intergenic |
| TCGTCCAAGGTGAAGCCTAA+AGG | 0.536499 | 7.4:+7878344 | None:intergenic |
| TTGCGGTCTCTCAACTCGCT+AGG | 0.541840 | 7.4:+7878018 | None:intergenic |
| TATTGGGTAGATTACAAGGT+AGG | 0.543853 | 7.4:-7878153 | MS.gene007330:CDS |
| ACCTTATTACCATCATCAAA+CGG | 0.548291 | 7.4:+7880380 | None:intergenic |
| TTGTCGAATCTTGGATCCAA+CGG | 0.552308 | 7.4:-7880656 | MS.gene007330:CDS |
| GCTATGACCAAACCCATGGT+TGG | 0.552394 | 7.4:-7878290 | MS.gene007330:CDS |
| TTTAAGCTGTCAACTTCAGA+TGG | 0.554061 | 7.4:-7878249 | MS.gene007330:CDS |
| CTATTACTGGAATTGATGAT+CGG | 0.557562 | 7.4:-7880211 | MS.gene007330:CDS |
| TGGATATTGGGTAGATTACA+AGG | 0.571903 | 7.4:-7878157 | MS.gene007330:CDS |
| CATATTTGCAGCAAATATGG+TGG | 0.572697 | 7.4:-7878422 | MS.gene007330:CDS |
| GGCTTGATAGGGTTACTGGT+AGG | 0.574069 | 7.4:-7880265 | MS.gene007330:CDS |
| GCAAATATGGTGGTTTGAAG+TGG | 0.575682 | 7.4:-7878412 | MS.gene007330:CDS |
| TAGCGAGTTGAGAGACCGCA+AGG | 0.584165 | 7.4:-7878016 | MS.gene007330:CDS |
| ATGGTGGTTTGAAGTGGATG+GGG | 0.588532 | 7.4:-7878406 | MS.gene007330:CDS |
| GTCGCCGAGACTTGGAGCGA+TGG | 0.591097 | 7.4:+7880628 | None:intergenic |
| TGTAACCTAGATTCTTCAGT+AGG | 0.600640 | 7.4:+7880170 | None:intergenic |
| AGGTAACTTAGATTCCCAAA+CGG | 0.601089 | 7.4:+7880499 | None:intergenic |
| ACTGTCCACGATGATACATA+CGG | 0.613314 | 7.4:-7878192 | MS.gene007330:CDS |
| GAGTTGAGAGACCGCAAGGG+AGG | 0.616169 | 7.4:-7878012 | MS.gene007330:CDS |
| TGCAGCTATGACCAAACCCA+TGG | 0.624730 | 7.4:-7878294 | MS.gene007330:CDS |
| GTGGTTTGAAGTGGATGGGG+AGG | 0.629340 | 7.4:-7878403 | MS.gene007330:CDS |
| TGCCCGAAGAACTACGCTGT+CGG | 0.632314 | 7.4:-7880448 | MS.gene007330:CDS |
| GACTGTACACATTCAAAAGG+TGG | 0.636157 | 7.4:-7878069 | MS.gene007330:CDS |
| TGATCGGAGATACTGGACTT+GGG | 0.644140 | 7.4:-7880195 | MS.gene007330:CDS |
| AGCGAGTTGAGAGACCGCAA+GGG | 0.651355 | 7.4:-7878015 | MS.gene007330:CDS |
| AGATTCCCAAACGGAATCAG+CGG | 0.656920 | 7.4:+7880508 | None:intergenic |
| ACATACGGCAATCATAAGCG+TGG | 0.659891 | 7.4:-7878177 | MS.gene007330:CDS |
| GATTGCCGTATGTATCATCG+TGG | 0.696598 | 7.4:+7878187 | None:intergenic |
| GCTAAGTTACAAATCTCGGG+AGG | 0.700399 | 7.4:+7880563 | None:intergenic |
| TAAATACAGAATCTACACAA+AGG | 0.700993 | 7.4:+7878046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGATGGAAATATTAT+TGG | - | chr7.4:7878767-7878786 | MS.gene007330:intron | 15.0% |
| !! | TGTAATTAAAAACAAGTATT+GGG | + | chr7.4:7878616-7878635 | None:intergenic | 15.0% |
| !! | TTGTAATTAAAAACAAGTAT+TGG | + | chr7.4:7878617-7878636 | None:intergenic | 15.0% |
| !! | TTTCATAAGTTAAATTAAGA+TGG | - | chr7.4:7878755-7878774 | MS.gene007330:intron | 15.0% |
| !!! | AAAAAATATGTTGACTTTTA+AGG | - | chr7.4:7879192-7879211 | MS.gene007330:intron | 15.0% |
| !!! | TTGTAAACTTAATTTTCAAT+GGG | - | chr7.4:7879390-7879409 | MS.gene007330:intron | 15.0% |
| !! | AATTCAATTGAACTGTTAAT+TGG | - | chr7.4:7879478-7879497 | MS.gene007330:intron | 20.0% |
| !! | ATTACAAGACTTGAAATATT+TGG | + | chr7.4:7878908-7878927 | None:intergenic | 20.0% |
| !! | ATTCAATTGAACTGTTAATT+GGG | - | chr7.4:7879479-7879498 | MS.gene007330:intron | 20.0% |
| !! | GTTTATTGTTTCAAATCATT+CGG | - | chr7.4:7878333-7878352 | MS.gene007330:CDS | 20.0% |
| !! | TTAATAAAACATCAACATGT+AGG | - | chr7.4:7879992-7880011 | MS.gene007330:intron | 20.0% |
| !! | TTTCTATTATCATTCATTTC+AGG | - | chr7.4:7880206-7880225 | MS.gene007330:CDS | 20.0% |
| !!! | GTTGTAAACTTAATTTTCAA+TGG | - | chr7.4:7879389-7879408 | MS.gene007330:intron | 20.0% |
| !!! | TTAAATTCTTTTAATCCAAG+AGG | - | chr7.4:7879065-7879084 | MS.gene007330:intron | 20.0% |
| !!! | TTTTTATTGATGATGGAATT+AGG | - | chr7.4:7878360-7878379 | MS.gene007330:CDS | 20.0% |
| ! | ACTCTTGAATATAGTCTTTA+TGG | - | chr7.4:7879115-7879134 | MS.gene007330:intron | 25.0% |
| ! | ACTTGAAATATTTGGATCTT+AGG | + | chr7.4:7878900-7878919 | None:intergenic | 25.0% |
| ! | AGTTTATTTACAGTTTAGCT+AGG | + | chr7.4:7878864-7878883 | None:intergenic | 25.0% |
| ! | ATAATTATACTCTCTCCTTT+AGG | - | chr7.4:7880305-7880324 | MS.gene007330:intron | 25.0% |
| ! | GATAGACAAATTATTGTAAG+AGG | - | chr7.4:7879863-7879882 | MS.gene007330:intron | 25.0% |
| ! | TAAATACAGAATCTACACAA+AGG | + | chr7.4:7880621-7880640 | None:intergenic | 25.0% |
| ! | TTGAATATAGTCTTTATGGT+TGG | - | chr7.4:7879119-7879138 | MS.gene007330:intron | 25.0% |
| !!! | ATTGGAATAGTTTTACGAAT+GGG | + | chr7.4:7880073-7880092 | None:intergenic | 25.0% |
| !!! | CGGTTTATTTTTATTGATGA+TGG | - | chr7.4:7878353-7878372 | MS.gene007330:CDS | 25.0% |
| !!! | CTTTTTCTCACATTTAAAGT+TGG | - | chr7.4:7878575-7878594 | MS.gene007330:intron | 25.0% |
| !!! | TAATTTTTGAGAGCATGTTT+GGG | - | chr7.4:7878640-7878659 | MS.gene007330:intron | 25.0% |
| !!! | TGCTTGTAATTTTGAGAAAA+GGG | - | chr7.4:7879019-7879038 | MS.gene007330:intron | 25.0% |
| !!! | TTGCTTGTAATTTTGAGAAA+AGG | - | chr7.4:7879018-7879037 | MS.gene007330:intron | 25.0% |
| AAAACATCAACATGTAGGTT+TGG | - | chr7.4:7879997-7880016 | MS.gene007330:intron | 30.0% | |
| AACAGCGAAAATATCTTTCT+TGG | + | chr7.4:7878249-7878268 | None:intergenic | 30.0% | |
| ACAACAAAACACATAGAATC+AGG | + | chr7.4:7879344-7879363 | None:intergenic | 30.0% | |
| ACCTTATTACCATCATCAAA+CGG | + | chr7.4:7878287-7878306 | None:intergenic | 30.0% | |
| ATAGCTTATAAGCAGTAGAT+TGG | + | chr7.4:7880091-7880110 | None:intergenic | 30.0% | |
| ATTAACCTGTGTTACACTAT+AGG | + | chr7.4:7879910-7879929 | None:intergenic | 30.0% | |
| ATTATAATTGAGCCTCCTAA+AGG | - | chr7.4:7879656-7879675 | MS.gene007330:intron | 30.0% | |
| ATTGACTGTACACATTCAAA+AGG | - | chr7.4:7880592-7880611 | MS.gene007330:CDS | 30.0% | |
| CAACAAAACACATAGAATCA+GGG | + | chr7.4:7879343-7879362 | None:intergenic | 30.0% | |
| CAACTCTTCTTGAAATTGAA+TGG | + | chr7.4:7879225-7879244 | None:intergenic | 30.0% | |
| CTAACTATCAACATCTTCTA+AGG | - | chr7.4:7878189-7878208 | MS.gene007330:CDS | 30.0% | |
| GGGAAATTGGATTATTACTT+TGG | - | chr7.4:7879040-7879059 | MS.gene007330:intron | 30.0% | |
| GTATAATTATCAGCAGGAAA+TGG | + | chr7.4:7880295-7880314 | None:intergenic | 30.0% | |
| TAGCATATTTGCAGCAAATA+TGG | - | chr7.4:7880239-7880258 | MS.gene007330:CDS | 30.0% | |
| TAGGATTTGCATGTCAATTT+CGG | - | chr7.4:7878418-7878437 | MS.gene007330:CDS | 30.0% | |
| ! | AACATCTTGTTATCAATGCT+AGG | - | chr7.4:7879722-7879741 | MS.gene007330:intron | 30.0% |
| ! | ACATCTTGTTATCAATGCTA+GGG | - | chr7.4:7879723-7879742 | MS.gene007330:intron | 30.0% |
| ! | CTATTACTGGAATTGATGAT+CGG | - | chr7.4:7878453-7878472 | MS.gene007330:intron | 30.0% |
| ! | CTTAATAGTGCTACTATTAC+TGG | + | chr7.4:7880126-7880145 | None:intergenic | 30.0% |
| ! | TATTTCTCTGGTTCAAACAT+AGG | - | chr7.4:7879266-7879285 | MS.gene007330:intron | 30.0% |
| !! | AATAGTTTTACGAATGGGAA+TGG | + | chr7.4:7880068-7880087 | None:intergenic | 30.0% |
| !! | AGAAGATGTTGATAGTTAGA+AGG | + | chr7.4:7878188-7878207 | None:intergenic | 30.0% |
| !! | ATAGTTTTACGAATGGGAAT+GGG | + | chr7.4:7880067-7880086 | None:intergenic | 30.0% |
| !! | ATTTTGAGAAAAGGGGAAAT+TGG | - | chr7.4:7879027-7879046 | MS.gene007330:intron | 30.0% |
| !! | GAGAATCTAACTTTTGTTGT+AGG | + | chr7.4:7880562-7880581 | None:intergenic | 30.0% |
| !! | GATTGGAATAGTTTTACGAA+TGG | + | chr7.4:7880074-7880093 | None:intergenic | 30.0% |
| !! | GCTTGTAATTTTGAGAAAAG+GGG | - | chr7.4:7879020-7879039 | MS.gene007330:intron | 30.0% |
| !! | GTAATTTTTGAGAGCATGTT+TGG | - | chr7.4:7878639-7878658 | MS.gene007330:intron | 30.0% |
| !! | TTGATGATGGTAATAAGGTA+GGG | - | chr7.4:7878288-7878307 | MS.gene007330:CDS | 30.0% |
| !! | TTTGATGATGGTAATAAGGT+AGG | - | chr7.4:7878287-7878306 | MS.gene007330:CDS | 30.0% |
| AAACCTTTACCGTTTGATGA+TGG | - | chr7.4:7878275-7878294 | MS.gene007330:CDS | 35.0% | |
| AAACTGCATCTATAGTGAGA+AGG | + | chr7.4:7879612-7879631 | None:intergenic | 35.0% | |
| AGGTAACTTAGATTCCCAAA+CGG | + | chr7.4:7878168-7878187 | None:intergenic | 35.0% | |
| CAATCATAAGCGTGGATATT+GGG | - | chr7.4:7880495-7880514 | MS.gene007330:CDS | 35.0% | |
| CAATGGGAATGTTAAATTGC+TGG | - | chr7.4:7879406-7879425 | MS.gene007330:intron | 35.0% | |
| CAGGTTAATCTCACAGAAAA+AGG | - | chr7.4:7879956-7879975 | MS.gene007330:intron | 35.0% | |
| CATATTTGCAGCAAATATGG+TGG | - | chr7.4:7880242-7880261 | MS.gene007330:CDS | 35.0% | |
| GGAATTGTTGAGACTATAAC+AGG | + | chr7.4:7878965-7878984 | None:intergenic | 35.0% | |
| GGCAGTGTAGTTTCTAATAT+TGG | + | chr7.4:7879591-7879610 | None:intergenic | 35.0% | |
| GTTGACAGCTTAAATATGAC+TGG | + | chr7.4:7880409-7880428 | None:intergenic | 35.0% | |
| TAGTCTCAACAATTCCTGAT+TGG | - | chr7.4:7878969-7878988 | MS.gene007330:intron | 35.0% | |
| TATTGGGTAGATTACAAGGT+AGG | - | chr7.4:7880511-7880530 | MS.gene007330:CDS | 35.0% | |
| TGGATATTGGGTAGATTACA+AGG | - | chr7.4:7880507-7880526 | MS.gene007330:CDS | 35.0% | |
| TGTAACCTAGATTCTTCAGT+AGG | + | chr7.4:7878497-7878516 | None:intergenic | 35.0% | |
| TGTACAGTCAATCTGTTTCA+TGG | + | chr7.4:7880584-7880603 | None:intergenic | 35.0% | |
| TTACCATCATCAAACGGTAA+AGG | + | chr7.4:7878281-7878300 | None:intergenic | 35.0% | |
| TTTAAGCTGTCAACTTCAGA+TGG | - | chr7.4:7880415-7880434 | MS.gene007330:CDS | 35.0% | |
| TTTAATCCAAGAGGATTGCT+AGG | - | chr7.4:7879074-7879093 | MS.gene007330:intron | 35.0% | |
| TTTGGATCTTAGGATGCATT+AGG | + | chr7.4:7878890-7878909 | None:intergenic | 35.0% | |
| ! | GAGAGAGTATAATTATCAGC+AGG | + | chr7.4:7880301-7880320 | None:intergenic | 35.0% |
| ! | TTAGGTTTTTGCAGCAATTG+TGG | - | chr7.4:7878378-7878397 | MS.gene007330:CDS | 35.0% |
| !! | ACCGTTTGATGATGGTAATA+AGG | - | chr7.4:7878283-7878302 | MS.gene007330:CDS | 35.0% |
| ACAAACCAAGCAAACCAATC+AGG | + | chr7.4:7878986-7879005 | None:intergenic | 40.0% | |
| ACTGTCCACGATGATACATA+CGG | - | chr7.4:7880472-7880491 | MS.gene007330:CDS | 40.0% | |
| CGAAGTTTAGCAGAACTTGT+TGG | - | chr7.4:7879818-7879837 | MS.gene007330:intron | 40.0% | |
| CGAGCTAAGTTACAAATCTC+GGG | + | chr7.4:7878107-7878126 | None:intergenic | 40.0% | |
| CTGCTCTGCGTAGTTTATTA+TGG | - | chr7.4:7880020-7880039 | MS.gene007330:intron | 40.0% | |
| GACTGTACACATTCAAAAGG+TGG | - | chr7.4:7880595-7880614 | MS.gene007330:CDS | 40.0% | |
| GCAAATATGGTGGTTTGAAG+TGG | - | chr7.4:7880252-7880271 | MS.gene007330:CDS | 40.0% | |
| GCAATCATAAGCGTGGATAT+TGG | - | chr7.4:7880494-7880513 | MS.gene007330:CDS | 40.0% | |
| GCGAAAGGTTTGTCTATTAC+TGG | - | chr7.4:7878440-7878459 | MS.gene007330:intron | 40.0% | |
| GCGAGCTAAGTTACAAATCT+CGG | + | chr7.4:7878108-7878127 | None:intergenic | 40.0% | |
| GGAGGCTCAATTATAATTGC+CGG | + | chr7.4:7879653-7879672 | None:intergenic | 40.0% | |
| GTAGGTGAGTTTATTGTGAC+TGG | - | chr7.4:7880529-7880548 | MS.gene007330:CDS | 40.0% | |
| TGCAACATTTCACTGATGAC+CGG | - | chr7.4:7879631-7879650 | MS.gene007330:intron | 40.0% | |
| TGGGAATGGGAATGGAAATT+TGG | + | chr7.4:7880054-7880073 | None:intergenic | 40.0% | |
| TTGTCGAATCTTGGATCCAA+CGG | - | chr7.4:7878008-7878027 | MS.gene007330:CDS | 40.0% | |
| TTTACGAATGGGAATGGGAA+TGG | + | chr7.4:7880062-7880081 | None:intergenic | 40.0% | |
| ! | ATATGGTGGTTTGAAGTGGA+TGG | - | chr7.4:7880256-7880275 | MS.gene007330:CDS | 40.0% |
| ! | GAATTGATGATCGGAGATAC+TGG | - | chr7.4:7878462-7878481 | MS.gene007330:intron | 40.0% |
| ! | GGACGATTTTCCAAAAGACT+CGG | - | chr7.4:7880337-7880356 | MS.gene007330:intron | 40.0% |
| ! | TATGGTGGTTTGAAGTGGAT+GGG | - | chr7.4:7880257-7880276 | MS.gene007330:CDS | 40.0% |
| !! | CAATTCCTGATTGGTTTGCT+TGG | - | chr7.4:7878978-7878997 | MS.gene007330:intron | 40.0% |
| !! | GATTTTCCAAAAGACTCGGT+CGG | - | chr7.4:7880341-7880360 | MS.gene007330:intron | 40.0% |
| !! | GCGACTTGCTAATATTTCTC+TGG | - | chr7.4:7879254-7879273 | MS.gene007330:intron | 40.0% |
| !! | GTCTTTTGGAAAATCGTCCA+AGG | + | chr7.4:7880336-7880355 | None:intergenic | 40.0% |
| !!! | TTTGCGACTTTTGGTGTCAT+AGG | - | chr7.4:7879687-7879706 | MS.gene007330:intron | 40.0% |
| ACATACGGCAATCATAAGCG+TGG | - | chr7.4:7880487-7880506 | MS.gene007330:CDS | 45.0% | |
| AGATTCCCAAACGGAATCAG+CGG | + | chr7.4:7878159-7878178 | None:intergenic | 45.0% | |
| ATGATCGGAGATACTGGACT+TGG | - | chr7.4:7878468-7878487 | MS.gene007330:intron | 45.0% | |
| ATTCCGACAGCGTAGTTCTT+CGG | + | chr7.4:7878222-7878241 | None:intergenic | 45.0% | |
| CTATGACCAAACCCATGGTT+GGG | - | chr7.4:7880375-7880394 | MS.gene007330:intron | 45.0% | |
| GATTGCCGTATGTATCATCG+TGG | + | chr7.4:7880480-7880499 | None:intergenic | 45.0% | |
| GCAGCAATTGTGGCTTGATA+GGG | - | chr7.4:7878388-7878407 | MS.gene007330:CDS | 45.0% | |
| GCTAAGTTACAAATCTCGGG+AGG | + | chr7.4:7878104-7878123 | None:intergenic | 45.0% | |
| GGGTTCCTACTGAAGAATCT+AGG | - | chr7.4:7878489-7878508 | MS.gene007330:intron | 45.0% | |
| TCGAGAACTCGTGAAGACTT+CGG | + | chr7.4:7879801-7879820 | None:intergenic | 45.0% | |
| TGATCGGAGATACTGGACTT+GGG | - | chr7.4:7878469-7878488 | MS.gene007330:intron | 45.0% | |
| TGCAGCAATTGTGGCTTGAT+AGG | - | chr7.4:7878387-7878406 | MS.gene007330:CDS | 45.0% | |
| TGCAGCCTATAGTGTAACAC+AGG | - | chr7.4:7879902-7879921 | MS.gene007330:intron | 45.0% | |
| TGCATGTCAATTTCGGCGAA+AGG | - | chr7.4:7878425-7878444 | MS.gene007330:CDS | 45.0% | |
| TGTGTTCCTAGCAATCCTCT+TGG | + | chr7.4:7879083-7879102 | None:intergenic | 45.0% | |
| TTGTGGCTTGATAGGGTTAC+TGG | - | chr7.4:7878395-7878414 | MS.gene007330:CDS | 45.0% | |
| TTTGATCCCAACCATGGGTT+TGG | + | chr7.4:7880384-7880403 | None:intergenic | 45.0% | |
| ! | ACACGAGCAACACAGTTTTC+AGG | + | chr7.4:7878065-7878084 | None:intergenic | 45.0% |
| ! | ATGGTGGTTTGAAGTGGATG+GGG | - | chr7.4:7880258-7880277 | MS.gene007330:CDS | 45.0% |
| ! | CACGAGCAACACAGTTTTCA+GGG | + | chr7.4:7878064-7878083 | None:intergenic | 45.0% |
| ! | GTGCTTCTCTTTGCGACTTT+TGG | - | chr7.4:7879678-7879697 | MS.gene007330:intron | 45.0% |
| ! | TGGCTTTTGATCCCAACCAT+GGG | + | chr7.4:7880389-7880408 | None:intergenic | 45.0% |
| ! | TTGAGAGCATGTTTGGGCTT+TGG | - | chr7.4:7878646-7878665 | MS.gene007330:intron | 45.0% |
| !! | CAAAGAGAAGCACCTTTAGG+AGG | + | chr7.4:7879671-7879690 | None:intergenic | 45.0% |
| !! | TCGCAAAGAGAAGCACCTTT+AGG | + | chr7.4:7879674-7879693 | None:intergenic | 45.0% |
| CGAGAACTCGTGAAGACTTC+GGG | + | chr7.4:7879800-7879819 | None:intergenic | 50.0% | |
| CTCTCCTTTAGGCTTCACCT+TGG | - | chr7.4:7880316-7880335 | MS.gene007330:intron | 50.0% | |
| GCTATGACCAAACCCATGGT+TGG | - | chr7.4:7880374-7880393 | MS.gene007330:intron | 50.0% | |
| GCTGTCAACTTCAGATGGTC+AGG | - | chr7.4:7880420-7880439 | MS.gene007330:CDS | 50.0% | |
| GGCTTGATAGGGTTACTGGT+AGG | - | chr7.4:7878399-7878418 | MS.gene007330:CDS | 50.0% | |
| GGTGCTTCGTTGTCGAATCT+TGG | - | chr7.4:7877999-7878018 | MS.gene007330:CDS | 50.0% | |
| TCAAAAAACCGCCTCCCTTG+CGG | + | chr7.4:7880666-7880685 | None:intergenic | 50.0% | |
| TCAACCATCGCTCCAAGTCT+CGG | - | chr7.4:7878032-7878051 | MS.gene007330:CDS | 50.0% | |
| TCGTCCAAGGTGAAGCCTAA+AGG | + | chr7.4:7880323-7880342 | None:intergenic | 50.0% | |
| TGCAGCTATGACCAAACCCA+TGG | - | chr7.4:7880370-7880389 | MS.gene007330:intron | 50.0% | |
| TTCCGACAGCGTAGTTCTTC+GGG | + | chr7.4:7878221-7878240 | None:intergenic | 50.0% | |
| ! | AGCATCATCTGAGTGCTGCT+TGG | - | chr7.4:7880444-7880463 | MS.gene007330:CDS | 50.0% |
| ! | CGCTTAAATCGCGCTTTTCG+CGG | - | chr7.4:7878125-7878144 | MS.gene007330:CDS | 50.0% |
| !! | CTGGCTTTTGATCCCAACCA+TGG | + | chr7.4:7880390-7880409 | None:intergenic | 50.0% |
| !! | TGCTTCCGCTGATTCCGTTT+GGG | - | chr7.4:7878151-7878170 | MS.gene007330:CDS | 50.0% |
| TGCCCGAAGAACTACGCTGT+CGG | - | chr7.4:7878216-7878235 | MS.gene007330:CDS | 55.0% | |
| TGGAGCGATGGTTGAACCGT+TGG | + | chr7.4:7878027-7878046 | None:intergenic | 55.0% | |
| TTGCGGTCTCTCAACTCGCT+AGG | + | chr7.4:7880649-7880668 | None:intergenic | 55.0% | |
| ! | AGCGAGTTGAGAGACCGCAA+GGG | - | chr7.4:7880649-7880668 | MS.gene007330:CDS | 55.0% |
| ! | GTGGTTTGAAGTGGATGGGG+AGG | - | chr7.4:7880261-7880280 | MS.gene007330:CDS | 55.0% |
| ! | TAGCGAGTTGAGAGACCGCA+AGG | - | chr7.4:7880648-7880667 | MS.gene007330:CDS | 55.0% |
| !! | CTGCTTCCGCTGATTCCGTT+TGG | - | chr7.4:7878150-7878169 | MS.gene007330:CDS | 55.0% |
| GAGTTGAGAGACCGCAAGGG+AGG | - | chr7.4:7880652-7880671 | MS.gene007330:CDS | 60.0% | |
| TCAGGGATGTCGCCGAGACT+TGG | + | chr7.4:7878047-7878066 | None:intergenic | 60.0% | |
| TTGAGAGACCGCAAGGGAGG+CGG | - | chr7.4:7880655-7880674 | MS.gene007330:CDS | 60.0% | |
| !! | TACGCGCCGACCGAGTCTTT+TGG | + | chr7.4:7880350-7880369 | None:intergenic | 60.0% |
| GTCGCCGAGACTTGGAGCGA+TGG | + | chr7.4:7878039-7878058 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 7877996 | 7880690 | 7877996 | ID=MS.gene007330 |
| chr7.4 | mRNA | 7877996 | 7880690 | 7877996 | ID=MS.gene007330.t1;Parent=MS.gene007330 |
| chr7.4 | exon | 7880382 | 7880690 | 7880382 | ID=MS.gene007330.t1.exon1;Parent=MS.gene007330.t1 |
| chr7.4 | CDS | 7880382 | 7880690 | 7880382 | ID=cds.MS.gene007330.t1;Parent=MS.gene007330.t1 |
| chr7.4 | exon | 7880176 | 7880294 | 7880176 | ID=MS.gene007330.t1.exon2;Parent=MS.gene007330.t1 |
| chr7.4 | CDS | 7880176 | 7880294 | 7880176 | ID=cds.MS.gene007330.t1;Parent=MS.gene007330.t1 |
| chr7.4 | exon | 7877996 | 7878458 | 7877996 | ID=MS.gene007330.t1.exon3;Parent=MS.gene007330.t1 |
| chr7.4 | CDS | 7877996 | 7878458 | 7877996 | ID=cds.MS.gene007330.t1;Parent=MS.gene007330.t1 |
| Gene Sequence |
| Protein sequence |
