Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007614.t1 | RHN48604.1 | 98 | 296 | 6 | 0 | 1 | 296 | 73 | 368 | 1.50E-173 | 618.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007614.t1 | Q9LF92 | 69.6 | 299 | 87 | 3 | 1 | 296 | 1 | 298 | 3.8e-125 | 449.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007614.t1 | A0A072U2Z8 | 98.0 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 1.1e-173 | 618.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007614 | MS.gene72988 | PPI |
| MS.gene007614 | MS.gene033388 | PPI |
| MS.gene007614 | MS.gene011426 | PPI |
| MS.gene007614 | MS.gene015544 | PPI |
| MS.gene007614 | MS.gene20125 | PPI |
| MS.gene007614 | MS.gene015546 | PPI |
| MS.gene007614 | MS.gene072814 | PPI |
| MS.gene007614 | MS.gene22617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007614.t1 | MTR_7g103380 | 97.973 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 0.0 | 606 |
| MS.gene007614.t1 | MTR_5g010800 | 54.983 | 291 | 116 | 4 | 1 | 290 | 1 | 277 | 2.88e-112 | 326 |
| MS.gene007614.t1 | MTR_4g102770 | 57.509 | 273 | 104 | 2 | 19 | 290 | 19 | 280 | 1.19e-109 | 319 |
| MS.gene007614.t1 | MTR_1g101390 | 53.020 | 298 | 120 | 2 | 1 | 289 | 1 | 287 | 2.86e-109 | 318 |
| MS.gene007614.t1 | MTR_0002s0020 | 54.110 | 292 | 115 | 3 | 1 | 284 | 1 | 281 | 4.98e-108 | 315 |
| MS.gene007614.t1 | MTR_0113s0040 | 47.603 | 292 | 139 | 2 | 1 | 289 | 1 | 281 | 2.87e-98 | 290 |
| MS.gene007614.t1 | MTR_7g112560 | 31.250 | 272 | 158 | 8 | 22 | 283 | 4 | 256 | 1.86e-33 | 123 |
| MS.gene007614.t1 | MTR_4g023570 | 30.712 | 267 | 154 | 7 | 22 | 287 | 4 | 240 | 3.39e-32 | 119 |
| MS.gene007614.t1 | MTR_1g079370 | 26.354 | 277 | 176 | 6 | 19 | 283 | 4 | 264 | 2.62e-30 | 115 |
| MS.gene007614.t1 | MTR_1g100597 | 26.241 | 282 | 173 | 6 | 21 | 283 | 6 | 271 | 7.57e-29 | 111 |
| MS.gene007614.t1 | MTR_1g079260 | 26.481 | 287 | 176 | 6 | 18 | 285 | 3 | 273 | 1.60e-28 | 110 |
| MS.gene007614.t1 | MTR_1g083580 | 25.862 | 290 | 175 | 8 | 18 | 283 | 7 | 280 | 3.65e-27 | 107 |
| MS.gene007614.t1 | MTR_1g079180 | 25.818 | 275 | 176 | 7 | 21 | 283 | 6 | 264 | 5.08e-27 | 106 |
| MS.gene007614.t1 | MTR_1g079200 | 26.715 | 277 | 170 | 11 | 21 | 283 | 6 | 263 | 2.33e-26 | 104 |
| MS.gene007614.t1 | MTR_1g079460 | 24.727 | 275 | 184 | 6 | 21 | 285 | 6 | 267 | 4.28e-26 | 104 |
| MS.gene007614.t1 | MTR_1g079140 | 37.762 | 143 | 86 | 2 | 21 | 160 | 15 | 157 | 9.76e-26 | 104 |
| MS.gene007614.t1 | MTR_1g079380 | 26.715 | 277 | 175 | 7 | 19 | 283 | 4 | 264 | 1.98e-25 | 103 |
| MS.gene007614.t1 | MTR_7g112550 | 24.742 | 291 | 180 | 7 | 18 | 283 | 6 | 282 | 8.77e-25 | 101 |
| MS.gene007614.t1 | MTR_1g079230 | 24.823 | 282 | 178 | 6 | 21 | 283 | 6 | 272 | 6.81e-24 | 98.6 |
| MS.gene007614.t1 | MTR_1g100613 | 26.971 | 241 | 140 | 5 | 35 | 253 | 5 | 231 | 1.64e-23 | 96.7 |
| MS.gene007614.t1 | MTR_3g452600 | 25.182 | 274 | 179 | 5 | 19 | 283 | 10 | 266 | 4.78e-22 | 93.2 |
| MS.gene007614.t1 | MTR_1g079850 | 24.490 | 294 | 176 | 8 | 21 | 285 | 6 | 282 | 4.77e-21 | 90.9 |
| MS.gene007614.t1 | MTR_1g079400 | 32.414 | 145 | 95 | 2 | 22 | 163 | 15 | 159 | 4.41e-20 | 88.2 |
| MS.gene007614.t1 | MTR_1g079410 | 31.757 | 148 | 92 | 3 | 22 | 163 | 11 | 155 | 1.89e-19 | 86.3 |
| MS.gene007614.t1 | MTR_3g450990 | 24.286 | 280 | 190 | 7 | 19 | 283 | 10 | 282 | 2.13e-17 | 80.9 |
| MS.gene007614.t1 | MTR_1g079250 | 25.965 | 285 | 180 | 8 | 21 | 285 | 6 | 279 | 4.45e-16 | 77.4 |
| MS.gene007614.t1 | MTR_7g096300 | 24.830 | 294 | 179 | 7 | 21 | 290 | 6 | 281 | 4.65e-15 | 75.9 |
| MS.gene007614.t1 | MTR_2g079100 | 23.466 | 277 | 176 | 8 | 18 | 281 | 8 | 261 | 1.35e-14 | 72.8 |
| MS.gene007614.t1 | MTR_1g079350 | 24.514 | 257 | 158 | 8 | 18 | 253 | 3 | 244 | 8.40e-14 | 70.5 |
| MS.gene007614.t1 | MTR_3g006850 | 22.222 | 216 | 142 | 5 | 21 | 223 | 19 | 221 | 1.25e-12 | 67.4 |
| MS.gene007614.t1 | MTR_1g078470 | 26.667 | 180 | 101 | 6 | 115 | 283 | 24 | 183 | 1.02e-11 | 63.2 |
| MS.gene007614.t1 | MTR_1g079350 | 30.882 | 136 | 84 | 5 | 18 | 146 | 3 | 135 | 2.57e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007614.t1 | AT3G53000 | 69.565 | 299 | 87 | 3 | 1 | 296 | 1 | 298 | 1.51e-155 | 436 |
| MS.gene007614.t1 | AT3G61060 | 56.554 | 267 | 106 | 1 | 19 | 285 | 25 | 281 | 3.89e-110 | 321 |
| MS.gene007614.t1 | AT3G61060 | 56.716 | 268 | 105 | 2 | 19 | 285 | 25 | 282 | 5.77e-109 | 318 |
| MS.gene007614.t1 | AT1G12710 | 52.805 | 303 | 113 | 5 | 1 | 289 | 1 | 287 | 8.37e-107 | 312 |
| MS.gene007614.t1 | AT1G12710 | 46.377 | 345 | 113 | 6 | 1 | 289 | 1 | 329 | 2.44e-98 | 292 |
| MS.gene007614.t1 | AT1G63090 | 51.916 | 287 | 125 | 3 | 4 | 289 | 11 | 285 | 4.92e-98 | 290 |
| MS.gene007614.t1 | AT5G52120 | 45.791 | 297 | 135 | 3 | 8 | 289 | 1 | 286 | 1.18e-90 | 271 |
| MS.gene007614.t1 | AT2G02360 | 26.667 | 270 | 176 | 7 | 23 | 286 | 18 | 271 | 1.04e-27 | 108 |
| MS.gene007614.t1 | AT2G02340 | 27.425 | 299 | 178 | 10 | 9 | 287 | 26 | 305 | 4.64e-27 | 107 |
| MS.gene007614.t1 | AT2G02240 | 26.599 | 297 | 180 | 9 | 5 | 285 | 44 | 318 | 2.30e-26 | 106 |
| MS.gene007614.t1 | AT2G02230 | 36.424 | 151 | 88 | 3 | 14 | 162 | 27 | 171 | 7.52e-26 | 105 |
| MS.gene007614.t1 | AT1G09155 | 26.510 | 298 | 178 | 10 | 22 | 291 | 3 | 287 | 7.33e-25 | 101 |
| MS.gene007614.t1 | AT1G80110 | 23.810 | 273 | 182 | 5 | 19 | 283 | 1 | 255 | 2.06e-23 | 96.7 |
| MS.gene007614.t1 | AT2G02250 | 34.395 | 157 | 96 | 4 | 10 | 163 | 36 | 188 | 4.27e-23 | 97.1 |
| MS.gene007614.t1 | AT5G24560 | 32.143 | 140 | 91 | 1 | 21 | 160 | 5 | 140 | 3.04e-22 | 92.0 |
| MS.gene007614.t1 | AT2G02350 | 30.464 | 151 | 100 | 3 | 10 | 159 | 15 | 161 | 5.12e-22 | 94.0 |
| MS.gene007614.t1 | AT2G02310 | 25.714 | 280 | 176 | 9 | 21 | 287 | 47 | 307 | 4.47e-21 | 91.3 |
| MS.gene007614.t1 | AT1G56240 | 24.830 | 294 | 180 | 7 | 22 | 287 | 4 | 284 | 2.71e-20 | 89.0 |
| MS.gene007614.t1 | AT1G56250 | 24.828 | 290 | 177 | 7 | 22 | 283 | 4 | 280 | 9.72e-20 | 87.4 |
| MS.gene007614.t1 | AT2G02320 | 24.579 | 297 | 188 | 10 | 4 | 285 | 25 | 300 | 5.87e-19 | 85.5 |
| MS.gene007614.t1 | AT2G02300 | 33.117 | 154 | 96 | 4 | 11 | 163 | 28 | 175 | 4.46e-17 | 80.1 |
| MS.gene007614.t1 | AT4G19840 | 30.603 | 232 | 124 | 11 | 62 | 285 | 44 | 246 | 1.21e-12 | 66.6 |
Find 76 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGCGAAAATATCTTTCT+TGG | 0.244190 | 7.3:-10762301 | None:intergenic |
| GCGAAAGGTTTGTCTATTAC+TGG | 0.248170 | 7.3:+10762497 | MS.gene007614:CDS |
| CTGCTTCCGCTGATTCCGTT+TGG | 0.279164 | 7.3:+10762205 | MS.gene007614:CDS |
| TGCTTCCGCTGATTCCGTTT+GGG | 0.281862 | 7.3:+10762206 | MS.gene007614:CDS |
| CTAACTATCAACATCTTCTA+AGG | 0.282361 | 7.3:+10762244 | MS.gene007614:CDS |
| TTCCGACAGCGTAGTTCTTC+GGG | 0.292375 | 7.3:-10762273 | None:intergenic |
| TAGCATATTTGCAGCAAATA+TGG | 0.292809 | 7.3:+10764288 | MS.gene007614:CDS |
| TTGTGGCTTGATAGGGTTAC+TGG | 0.305604 | 7.3:+10762452 | MS.gene007614:CDS |
| ATAATTATACTCTCTCCTTT+AGG | 0.320102 | 7.3:+10764354 | MS.gene007614:CDS |
| GGTGCTTCGTTGTCGAATCT+TGG | 0.327372 | 7.3:+10762054 | MS.gene007614:CDS |
| ATTCCGACAGCGTAGTTCTT+CGG | 0.334823 | 7.3:-10762274 | None:intergenic |
| TACGCGCCGACCGAGTCTTT+TGG | 0.340105 | 7.3:-10764396 | None:intergenic |
| TAGGGTTTGCATGTCAATTT+CGG | 0.355678 | 7.3:+10762475 | MS.gene007614:CDS |
| GCAATCATAAGCGTGGATAT+TGG | 0.361605 | 7.3:+10764543 | MS.gene007614:CDS |
| CAATCATAAGCGTGGATATT+GGG | 0.364455 | 7.3:+10764544 | MS.gene007614:CDS |
| TGCAGCAATTGTGGCTTGAT+AGG | 0.373892 | 7.3:+10762444 | MS.gene007614:intron |
| ACCGTTTGATGATGGTAATA+AGG | 0.383826 | 7.3:+10762338 | MS.gene007614:CDS |
| TGTACAGTCAATCTGTTTCA+TGG | 0.389000 | 7.3:-10764630 | None:intergenic |
| TTTGATCCCAACCATGGGTC+TGG | 0.400313 | 7.3:-10764430 | None:intergenic |
| GAATTGATGATCGGAGATAC+TGG | 0.406343 | 7.3:+10762519 | MS.gene007614:CDS |
| AGAAGATGTTGATAGTTAGA+AGG | 0.406652 | 7.3:-10762240 | None:intergenic |
| TCAGGGATGTCGCCGAGACT+TGG | 0.421026 | 7.3:-10762099 | None:intergenic |
| GGGTTCCTACTGAAGAATCT+AGG | 0.427818 | 7.3:+10762546 | MS.gene007614:CDS |
| GCTTGATAGGGTTACTGGTA+GGG | 0.443412 | 7.3:+10762457 | MS.gene007614:CDS |
| GGCTTGATAGGGTTACTGGT+AGG | 0.446268 | 7.3:+10762456 | MS.gene007614:CDS |
| GTATAATTATCAGCAGGAAA+TGG | 0.451382 | 7.3:-10764341 | None:intergenic |
| GCGAGCTAAGTTACAAATCT+CGG | 0.453621 | 7.3:-10762160 | None:intergenic |
| GCTGTCAACTTCAGATGGTC+AGG | 0.460205 | 7.3:+10764469 | MS.gene007614:CDS |
| ATGATCGGAGATACTGGACT+TGG | 0.466267 | 7.3:+10762525 | MS.gene007614:CDS |
| CTCTCCTTTAGGCTTCACCT+TGG | 0.478658 | 7.3:+10764365 | MS.gene007614:CDS |
| GTGGGTGAGTTTATTGTGAC+TGG | 0.484846 | 7.3:+10764578 | MS.gene007614:CDS |
| AGCATCATCTGAGTGCTGCT+TGG | 0.485935 | 7.3:+10764493 | MS.gene007614:CDS |
| GCAGCAATTGTGGCTTGATA+GGG | 0.487718 | 7.3:+10762445 | MS.gene007614:intron |
| GTTGACAGCTTAAATATGAC+TGG | 0.492659 | 7.3:-10764455 | None:intergenic |
| TTACCATCATCAAACGGTAA+AGG | 0.493520 | 7.3:-10762333 | None:intergenic |
| TGGAGCGATGGTTGAACCGT+TGG | 0.500130 | 7.3:-10762079 | None:intergenic |
| TGCATGTCAATTTCGGCGAA+AGG | 0.505228 | 7.3:+10762482 | MS.gene007614:CDS |
| AAACCTTTACCGTTTGATGA+TGG | 0.507236 | 7.3:+10762330 | MS.gene007614:CDS |
| CGAGCTAAGTTACAAATCTC+GGG | 0.515282 | 7.3:-10762159 | None:intergenic |
| TCAACCATCGCTCCAAGTCT+CGG | 0.520611 | 7.3:+10762087 | MS.gene007614:CDS |
| ATTGACTGTACACATTCAAA+AGG | 0.523702 | 7.3:+10764641 | MS.gene007614:CDS |
| TTGAGAGACCGCAAGGGAGG+CGG | 0.525474 | 7.3:+10764704 | MS.gene007614:CDS |
| ATATGGTGGTTTGAAGTGGA+TGG | 0.529067 | 7.3:+10764305 | MS.gene007614:CDS |
| CTATGACCAGACCCATGGTT+GGG | 0.529358 | 7.3:+10764424 | MS.gene007614:CDS |
| TATGGTGGTTTGAAGTGGAT+GGG | 0.530496 | 7.3:+10764306 | MS.gene007614:CDS |
| GAGAGAGTATAATTATCAGC+AGG | 0.530526 | 7.3:-10764347 | None:intergenic |
| TCGTCCAAGGTGAAGCCTAA+AGG | 0.536499 | 7.3:-10764369 | None:intergenic |
| TTGCGGTCTCTCAACTCGCT+AGG | 0.541840 | 7.3:-10764695 | None:intergenic |
| ACCTTATTACCATCATCAAA+CGG | 0.548291 | 7.3:-10762339 | None:intergenic |
| TTGTCGAATCTTGGATCCAA+CGG | 0.552308 | 7.3:+10762063 | MS.gene007614:CDS |
| TTTAAGCTGTCAACTTCAGA+TGG | 0.554061 | 7.3:+10764464 | MS.gene007614:CDS |
| CTATTACTGGAATTGATGAT+CGG | 0.557562 | 7.3:+10762510 | MS.gene007614:CDS |
| TGGATATTGGGTAGATTACA+AGG | 0.565259 | 7.3:+10764556 | MS.gene007614:CDS |
| CATATTTGCAGCAAATATGG+TGG | 0.572697 | 7.3:+10764291 | MS.gene007614:CDS |
| GCAAATATGGTGGTTTGAAG+TGG | 0.575682 | 7.3:+10764301 | MS.gene007614:CDS |
| TATTGGGTAGATTACAAGGT+GGG | 0.580797 | 7.3:+10764560 | MS.gene007614:CDS |
| TAGCGAGTTGAGAGACCGCA+AGG | 0.584165 | 7.3:+10764697 | MS.gene007614:CDS |
| ATGGTGGTTTGAAGTGGATG+GGG | 0.588532 | 7.3:+10764307 | MS.gene007614:CDS |
| GTCGCCGAGACTTGGAGCGA+TGG | 0.591097 | 7.3:-10762091 | None:intergenic |
| TGTAACCTAGATTCTTCAGT+AGG | 0.600640 | 7.3:-10762551 | None:intergenic |
| AGGTAACTTAGATTCCCAAA+CGG | 0.601089 | 7.3:-10762220 | None:intergenic |
| TGCAGCTATGACCAGACCCA+TGG | 0.603310 | 7.3:+10764419 | MS.gene007614:CDS |
| GCTATGACCAGACCCATGGT+TGG | 0.608469 | 7.3:+10764423 | MS.gene007614:CDS |
| ACTGTCCACGATGATACATA+CGG | 0.613314 | 7.3:+10764521 | MS.gene007614:CDS |
| GAGTTGAGAGACCGCAAGGG+AGG | 0.616169 | 7.3:+10764701 | MS.gene007614:CDS |
| GTGGTTTGAAGTGGATGGGG+AGG | 0.629340 | 7.3:+10764310 | MS.gene007614:CDS |
| TGCCCGAAGAACTACGCTGT+CGG | 0.632314 | 7.3:+10762271 | MS.gene007614:CDS |
| GACTGTACACATTCAAAAGG+TGG | 0.636157 | 7.3:+10764644 | MS.gene007614:CDS |
| TGATCGGAGATACTGGACTT+GGG | 0.644140 | 7.3:+10762526 | MS.gene007614:CDS |
| AGCGAGTTGAGAGACCGCAA+GGG | 0.651355 | 7.3:+10764698 | MS.gene007614:CDS |
| AGATTCCCAAACGGAATCAG+CGG | 0.656920 | 7.3:-10762211 | None:intergenic |
| ACATACGGCAATCATAAGCG+TGG | 0.659891 | 7.3:+10764536 | MS.gene007614:CDS |
| GATTGCCGTATGTATCATCG+TGG | 0.696598 | 7.3:-10764526 | None:intergenic |
| GCTAAGTTACAAATCTCGGG+AGG | 0.700399 | 7.3:-10762156 | None:intergenic |
| TAAATACAGAATCTACACAA+AGG | 0.700993 | 7.3:-10764667 | None:intergenic |
| ATATTGGGTAGATTACAAGG+TGG | 0.766319 | 7.3:+10764559 | MS.gene007614:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGATGGAAATATTAT+TGG | + | chr7.3:10762821-10762840 | MS.gene007614:intron | 15.0% |
| !! | TGTAATTAAAAACAAGTATT+GGG | - | chr7.3:10762673-10762692 | None:intergenic | 15.0% |
| !! | TTGTAATTAAAAACAAGTAT+TGG | - | chr7.3:10762674-10762693 | None:intergenic | 15.0% |
| !! | TTTCATAAGTTAAATTAAGA+TGG | + | chr7.3:10762809-10762828 | MS.gene007614:intron | 15.0% |
| !!! | AAAAAATATGTTGACTTTTA+AGG | + | chr7.3:10763246-10763265 | MS.gene007614:intron | 15.0% |
| !!! | TTGTAAACTTAATTTTCAAT+GGG | + | chr7.3:10763444-10763463 | MS.gene007614:intron | 15.0% |
| !! | AATTCAATTGAACTGTTAAT+TGG | + | chr7.3:10763532-10763551 | MS.gene007614:intron | 20.0% |
| !! | ATTACAAGACTTGAAATATT+TGG | - | chr7.3:10762962-10762981 | None:intergenic | 20.0% |
| !! | ATTCAATTGAACTGTTAATT+GGG | + | chr7.3:10763533-10763552 | MS.gene007614:intron | 20.0% |
| !! | GTTTATTGTTTCAAATCATT+CGG | + | chr7.3:10762390-10762409 | MS.gene007614:intron | 20.0% |
| !! | TTAATAAAACATCAACATGT+AGG | + | chr7.3:10764047-10764066 | MS.gene007614:intron | 20.0% |
| !! | TTTCTATTATCATTCATTTC+AGG | + | chr7.3:10764255-10764274 | MS.gene007614:intron | 20.0% |
| !!! | GTTGTAAACTTAATTTTCAA+TGG | + | chr7.3:10763443-10763462 | MS.gene007614:intron | 20.0% |
| !!! | TTAAATTCTTTTAATCCAAG+AGG | + | chr7.3:10763119-10763138 | MS.gene007614:intron | 20.0% |
| !!! | TTTTTATTGATGATGGAATT+AGG | + | chr7.3:10762417-10762436 | MS.gene007614:intron | 20.0% |
| ! | ACTCTTGAATATAGTCTTTA+TGG | + | chr7.3:10763169-10763188 | MS.gene007614:intron | 25.0% |
| ! | ACTTGAAATATTTGGATCTT+AGG | - | chr7.3:10762954-10762973 | None:intergenic | 25.0% |
| ! | AGTTTATTTACAGTTTAGCT+AGG | - | chr7.3:10762918-10762937 | None:intergenic | 25.0% |
| ! | ATAATTATACTCTCTCCTTT+AGG | + | chr7.3:10764354-10764373 | MS.gene007614:CDS | 25.0% |
| ! | GATAGACAAATTATTGTAAG+AGG | + | chr7.3:10763917-10763936 | MS.gene007614:intron | 25.0% |
| ! | TAAATACAGAATCTACACAA+AGG | - | chr7.3:10764670-10764689 | None:intergenic | 25.0% |
| ! | TGGAAATTGGATTATTACTT+TGG | + | chr7.3:10763094-10763113 | MS.gene007614:intron | 25.0% |
| ! | TTGAATATAGTCTTTATGGT+TGG | + | chr7.3:10763173-10763192 | MS.gene007614:intron | 25.0% |
| !!! | ATTGGAATAGTTTTACGAAT+GGG | - | chr7.3:10764122-10764141 | None:intergenic | 25.0% |
| !!! | ATTTTGAGAAAAGTGGAAAT+TGG | + | chr7.3:10763081-10763100 | MS.gene007614:intron | 25.0% |
| !!! | CGGTTTATTTTTATTGATGA+TGG | + | chr7.3:10762410-10762429 | MS.gene007614:intron | 25.0% |
| !!! | CTTTTTCTCACATTTAAAGT+TGG | + | chr7.3:10762632-10762651 | MS.gene007614:intron | 25.0% |
| !!! | TAATTTTTGAGAGCATGTTT+GGG | + | chr7.3:10762697-10762716 | MS.gene007614:intron | 25.0% |
| AAAACATCAACATGTAGGTT+TGG | + | chr7.3:10764052-10764071 | MS.gene007614:intron | 30.0% | |
| AACAGCGAAAATATCTTTCT+TGG | - | chr7.3:10762304-10762323 | None:intergenic | 30.0% | |
| AAGCTGATTGAAACTTAGTT+CGG | + | chr7.3:10763483-10763502 | MS.gene007614:intron | 30.0% | |
| ACAACAAAACACATAGAATC+AGG | - | chr7.3:10763398-10763417 | None:intergenic | 30.0% | |
| ACCTTATTACCATCATCAAA+CGG | - | chr7.3:10762342-10762361 | None:intergenic | 30.0% | |
| ATAGCTTATAAGCAGTAGAT+TGG | - | chr7.3:10764140-10764159 | None:intergenic | 30.0% | |
| ATTAACCTGTGTTACACTAT+AGG | - | chr7.3:10763964-10763983 | None:intergenic | 30.0% | |
| ATTATAATTGAGCCTCCTAA+AGG | + | chr7.3:10763710-10763729 | MS.gene007614:intron | 30.0% | |
| ATTGACTGTACACATTCAAA+AGG | + | chr7.3:10764641-10764660 | MS.gene007614:CDS | 30.0% | |
| CAACAAAACACATAGAATCA+GGG | - | chr7.3:10763397-10763416 | None:intergenic | 30.0% | |
| CAACTCTTCTTGAAATTGAA+TGG | - | chr7.3:10763279-10763298 | None:intergenic | 30.0% | |
| CTAACTATCAACATCTTCTA+AGG | + | chr7.3:10762244-10762263 | MS.gene007614:CDS | 30.0% | |
| GTATAATTATCAGCAGGAAA+TGG | - | chr7.3:10764344-10764363 | None:intergenic | 30.0% | |
| TAGCATATTTGCAGCAAATA+TGG | + | chr7.3:10764288-10764307 | MS.gene007614:CDS | 30.0% | |
| ! | AACATCTTGTTATCAATGCT+AGG | + | chr7.3:10763776-10763795 | MS.gene007614:intron | 30.0% |
| ! | ACATCTTGTTATCAATGCTA+GGG | + | chr7.3:10763777-10763796 | MS.gene007614:intron | 30.0% |
| ! | CTATTACTGGAATTGATGAT+CGG | + | chr7.3:10762510-10762529 | MS.gene007614:CDS | 30.0% |
| ! | CTTAATAGTGCTACTATTAC+TGG | - | chr7.3:10764175-10764194 | None:intergenic | 30.0% |
| ! | TATTTCTCTGGTTCAAACAT+AGG | + | chr7.3:10763320-10763339 | MS.gene007614:intron | 30.0% |
| !! | AATAGTTTTACGAATGGGAA+TGG | - | chr7.3:10764117-10764136 | None:intergenic | 30.0% |
| !! | AGAAGATGTTGATAGTTAGA+AGG | - | chr7.3:10762243-10762262 | None:intergenic | 30.0% |
| !! | GAGAATCTAACTTTTGTTGT+AGG | - | chr7.3:10764611-10764630 | None:intergenic | 30.0% |
| !! | GATTGGAATAGTTTTACGAA+TGG | - | chr7.3:10764123-10764142 | None:intergenic | 30.0% |
| !! | GCTTGTAATTTTGAGAAAAG+TGG | + | chr7.3:10763074-10763093 | MS.gene007614:intron | 30.0% |
| !! | GTAATTTTTGAGAGCATGTT+TGG | + | chr7.3:10762696-10762715 | MS.gene007614:intron | 30.0% |
| !! | TTGATGATGGTAATAAGGTA+GGG | + | chr7.3:10762343-10762362 | MS.gene007614:intron | 30.0% |
| !! | TTTGATGATGGTAATAAGGT+AGG | + | chr7.3:10762342-10762361 | MS.gene007614:intron | 30.0% |
| AAACCTTTACCGTTTGATGA+TGG | + | chr7.3:10762330-10762349 | MS.gene007614:CDS | 35.0% | |
| AAACTGCATCTATAGTGAGA+AGG | - | chr7.3:10763666-10763685 | None:intergenic | 35.0% | |
| AGGTAACTTAGATTCCCAAA+CGG | - | chr7.3:10762223-10762242 | None:intergenic | 35.0% | |
| ATATTGGGTAGATTACAAGG+TGG | + | chr7.3:10764559-10764578 | MS.gene007614:CDS | 35.0% | |
| CAATCATAAGCGTGGATATT+GGG | + | chr7.3:10764544-10764563 | MS.gene007614:CDS | 35.0% | |
| CAATGGGAATGTTAAATTGC+TGG | + | chr7.3:10763460-10763479 | MS.gene007614:intron | 35.0% | |
| CAGGTTAATCTCACAGAAAA+AGG | + | chr7.3:10764010-10764029 | MS.gene007614:intron | 35.0% | |
| CATATTTGCAGCAAATATGG+TGG | + | chr7.3:10764291-10764310 | MS.gene007614:CDS | 35.0% | |
| GGAATTGTTGAGACTATAAC+AGG | - | chr7.3:10763019-10763038 | None:intergenic | 35.0% | |
| GGCAGTGTAGTTTCTAATAT+TGG | - | chr7.3:10763645-10763664 | None:intergenic | 35.0% | |
| GTTGACAGCTTAAATATGAC+TGG | - | chr7.3:10764458-10764477 | None:intergenic | 35.0% | |
| TACGAATGGGAATGGAAATT+TGG | - | chr7.3:10764109-10764128 | None:intergenic | 35.0% | |
| TAGGGTTTGCATGTCAATTT+CGG | + | chr7.3:10762475-10762494 | MS.gene007614:CDS | 35.0% | |
| TAGTCTCAACAATTCCTGAT+TGG | + | chr7.3:10763023-10763042 | MS.gene007614:intron | 35.0% | |
| TATTGGGTAGATTACAAGGT+GGG | + | chr7.3:10764560-10764579 | MS.gene007614:CDS | 35.0% | |
| TGGATATTGGGTAGATTACA+AGG | + | chr7.3:10764556-10764575 | MS.gene007614:CDS | 35.0% | |
| TGTAACCTAGATTCTTCAGT+AGG | - | chr7.3:10762554-10762573 | None:intergenic | 35.0% | |
| TGTACAGTCAATCTGTTTCA+TGG | - | chr7.3:10764633-10764652 | None:intergenic | 35.0% | |
| TTACCATCATCAAACGGTAA+AGG | - | chr7.3:10762336-10762355 | None:intergenic | 35.0% | |
| TTTAAGCTGTCAACTTCAGA+TGG | + | chr7.3:10764464-10764483 | MS.gene007614:CDS | 35.0% | |
| TTTAATCCAAGAGGATTGCT+AGG | + | chr7.3:10763128-10763147 | MS.gene007614:intron | 35.0% | |
| TTTGGATCTTAGGATGCATT+AGG | - | chr7.3:10762944-10762963 | None:intergenic | 35.0% | |
| ! | GAGAGAGTATAATTATCAGC+AGG | - | chr7.3:10764350-10764369 | None:intergenic | 35.0% |
| ! | TTAGGTTTTTGCAGCAATTG+TGG | + | chr7.3:10762435-10762454 | MS.gene007614:intron | 35.0% |
| !! | ACCGTTTGATGATGGTAATA+AGG | + | chr7.3:10762338-10762357 | MS.gene007614:CDS | 35.0% |
| ACAAACCAAGCAAACCAATC+AGG | - | chr7.3:10763040-10763059 | None:intergenic | 40.0% | |
| ACTGTCCACGATGATACATA+CGG | + | chr7.3:10764521-10764540 | MS.gene007614:CDS | 40.0% | |
| CGAAGTTTAGCAGAACTTGT+TGG | + | chr7.3:10763872-10763891 | MS.gene007614:intron | 40.0% | |
| CGAGCTAAGTTACAAATCTC+GGG | - | chr7.3:10762162-10762181 | None:intergenic | 40.0% | |
| CTGCTCTGCGTAGTTTATTA+TGG | + | chr7.3:10764075-10764094 | MS.gene007614:intron | 40.0% | |
| GACTGTACACATTCAAAAGG+TGG | + | chr7.3:10764644-10764663 | MS.gene007614:CDS | 40.0% | |
| GCAAATATGGTGGTTTGAAG+TGG | + | chr7.3:10764301-10764320 | MS.gene007614:CDS | 40.0% | |
| GCAATCATAAGCGTGGATAT+TGG | + | chr7.3:10764543-10764562 | MS.gene007614:CDS | 40.0% | |
| GCGAAAGGTTTGTCTATTAC+TGG | + | chr7.3:10762497-10762516 | MS.gene007614:CDS | 40.0% | |
| GCGAGCTAAGTTACAAATCT+CGG | - | chr7.3:10762163-10762182 | None:intergenic | 40.0% | |
| GGAGGCTCAATTATAATTGC+CGG | - | chr7.3:10763707-10763726 | None:intergenic | 40.0% | |
| TACAGCCTATAGTGTAACAC+AGG | + | chr7.3:10763991-10764010 | MS.gene007614:intron | 40.0% | |
| TTGTCGAATCTTGGATCCAA+CGG | + | chr7.3:10762063-10762082 | MS.gene007614:CDS | 40.0% | |
| ! | ATATGGTGGTTTGAAGTGGA+TGG | + | chr7.3:10764305-10764324 | MS.gene007614:CDS | 40.0% |
| ! | GAATTGATGATCGGAGATAC+TGG | + | chr7.3:10762519-10762538 | MS.gene007614:CDS | 40.0% |
| ! | GGACGATTTTCCAAAAGACT+CGG | + | chr7.3:10764386-10764405 | MS.gene007614:CDS | 40.0% |
| ! | TATGGTGGTTTGAAGTGGAT+GGG | + | chr7.3:10764306-10764325 | MS.gene007614:CDS | 40.0% |
| ! | TGCGACATTTTACTGATGAC+CGG | + | chr7.3:10763685-10763704 | MS.gene007614:intron | 40.0% |
| !! | CAATTCCTGATTGGTTTGCT+TGG | + | chr7.3:10763032-10763051 | MS.gene007614:intron | 40.0% |
| !! | GATTTTCCAAAAGACTCGGT+CGG | + | chr7.3:10764390-10764409 | MS.gene007614:CDS | 40.0% |
| !! | GCGACTTGCTAATATTTCTC+TGG | + | chr7.3:10763308-10763327 | MS.gene007614:intron | 40.0% |
| !! | GTCTTTTGGAAAATCGTCCA+AGG | - | chr7.3:10764385-10764404 | None:intergenic | 40.0% |
| !!! | TTTGCGACTTTTGGTGTCAT+AGG | + | chr7.3:10763741-10763760 | MS.gene007614:intron | 40.0% |
| ACATACGGCAATCATAAGCG+TGG | + | chr7.3:10764536-10764555 | MS.gene007614:CDS | 45.0% | |
| AGATTCCCAAACGGAATCAG+CGG | - | chr7.3:10762214-10762233 | None:intergenic | 45.0% | |
| ATGATCGGAGATACTGGACT+TGG | + | chr7.3:10762525-10762544 | MS.gene007614:CDS | 45.0% | |
| ATTCCGACAGCGTAGTTCTT+CGG | - | chr7.3:10762277-10762296 | None:intergenic | 45.0% | |
| GATTGCCGTATGTATCATCG+TGG | - | chr7.3:10764529-10764548 | None:intergenic | 45.0% | |
| GCAGCAATTGTGGCTTGATA+GGG | + | chr7.3:10762445-10762464 | MS.gene007614:intron | 45.0% | |
| GCTAAGTTACAAATCTCGGG+AGG | - | chr7.3:10762159-10762178 | None:intergenic | 45.0% | |
| GCTTGATAGGGTTACTGGTA+GGG | + | chr7.3:10762457-10762476 | MS.gene007614:CDS | 45.0% | |
| GGGTTCCTACTGAAGAATCT+AGG | + | chr7.3:10762546-10762565 | MS.gene007614:CDS | 45.0% | |
| GTGGGTGAGTTTATTGTGAC+TGG | + | chr7.3:10764578-10764597 | MS.gene007614:CDS | 45.0% | |
| TGATCGGAGATACTGGACTT+GGG | + | chr7.3:10762526-10762545 | MS.gene007614:CDS | 45.0% | |
| TGCAGCAATTGTGGCTTGAT+AGG | + | chr7.3:10762444-10762463 | MS.gene007614:intron | 45.0% | |
| TGCAGCCTATAGTGTAACAC+AGG | + | chr7.3:10763956-10763975 | MS.gene007614:intron | 45.0% | |
| TGCATGTCAATTTCGGCGAA+AGG | + | chr7.3:10762482-10762501 | MS.gene007614:CDS | 45.0% | |
| TGTGTTCCTAGCAATCCTCT+TGG | - | chr7.3:10763137-10763156 | None:intergenic | 45.0% | |
| TTGTGGCTTGATAGGGTTAC+TGG | + | chr7.3:10762452-10762471 | MS.gene007614:CDS | 45.0% | |
| ! | ACACGAGCAACACAGTTTTC+AGG | - | chr7.3:10762120-10762139 | None:intergenic | 45.0% |
| ! | ATGGTGGTTTGAAGTGGATG+GGG | + | chr7.3:10764307-10764326 | MS.gene007614:CDS | 45.0% |
| ! | CACGAGCAACACAGTTTTCA+GGG | - | chr7.3:10762119-10762138 | None:intergenic | 45.0% |
| ! | GTGCTTCTCTTTGCGACTTT+TGG | + | chr7.3:10763732-10763751 | MS.gene007614:intron | 45.0% |
| ! | TGGCTTTTGATCCCAACCAT+GGG | - | chr7.3:10764438-10764457 | None:intergenic | 45.0% |
| ! | TTGAGAGCATGTTTGGGCTT+TGG | + | chr7.3:10762703-10762722 | MS.gene007614:intron | 45.0% |
| !! | CAAAGAGAAGCACCTTTAGG+AGG | - | chr7.3:10763725-10763744 | None:intergenic | 45.0% |
| !! | TCGCAAAGAGAAGCACCTTT+AGG | - | chr7.3:10763728-10763747 | None:intergenic | 45.0% |
| CGAGAACTCGTGAAGACTTC+AGG | - | chr7.3:10763854-10763873 | None:intergenic | 50.0% | |
| CTATGACCAGACCCATGGTT+GGG | + | chr7.3:10764424-10764443 | MS.gene007614:CDS | 50.0% | |
| CTCTCCTTTAGGCTTCACCT+TGG | + | chr7.3:10764365-10764384 | MS.gene007614:CDS | 50.0% | |
| GCTGTCAACTTCAGATGGTC+AGG | + | chr7.3:10764469-10764488 | MS.gene007614:CDS | 50.0% | |
| GGCTTGATAGGGTTACTGGT+AGG | + | chr7.3:10762456-10762475 | MS.gene007614:CDS | 50.0% | |
| GGTGCTTCGTTGTCGAATCT+TGG | + | chr7.3:10762054-10762073 | MS.gene007614:CDS | 50.0% | |
| TCAAAAAACCGCCTCCCTTG+CGG | - | chr7.3:10764715-10764734 | None:intergenic | 50.0% | |
| TCAACCATCGCTCCAAGTCT+CGG | + | chr7.3:10762087-10762106 | MS.gene007614:CDS | 50.0% | |
| TCGTCCAAGGTGAAGCCTAA+AGG | - | chr7.3:10764372-10764391 | None:intergenic | 50.0% | |
| TTCCGACAGCGTAGTTCTTC+GGG | - | chr7.3:10762276-10762295 | None:intergenic | 50.0% | |
| TTTGATCCCAACCATGGGTC+TGG | - | chr7.3:10764433-10764452 | None:intergenic | 50.0% | |
| ! | AGCATCATCTGAGTGCTGCT+TGG | + | chr7.3:10764493-10764512 | MS.gene007614:CDS | 50.0% |
| ! | CGCTTAAATCGCGCTTTTCG+CGG | + | chr7.3:10762180-10762199 | MS.gene007614:CDS | 50.0% |
| !! | CTGGCTTTTGATCCCAACCA+TGG | - | chr7.3:10764439-10764458 | None:intergenic | 50.0% |
| !! | TGCTTCCGCTGATTCCGTTT+GGG | + | chr7.3:10762206-10762225 | MS.gene007614:CDS | 50.0% |
| GCTATGACCAGACCCATGGT+TGG | + | chr7.3:10764423-10764442 | MS.gene007614:CDS | 55.0% | |
| TGCAGCTATGACCAGACCCA+TGG | + | chr7.3:10764419-10764438 | MS.gene007614:CDS | 55.0% | |
| TGCCCGAAGAACTACGCTGT+CGG | + | chr7.3:10762271-10762290 | MS.gene007614:CDS | 55.0% | |
| TGGAGCGATGGTTGAACCGT+TGG | - | chr7.3:10762082-10762101 | None:intergenic | 55.0% | |
| TTGCGGTCTCTCAACTCGCT+AGG | - | chr7.3:10764698-10764717 | None:intergenic | 55.0% | |
| ! | AGCGAGTTGAGAGACCGCAA+GGG | + | chr7.3:10764698-10764717 | MS.gene007614:CDS | 55.0% |
| ! | GTGGTTTGAAGTGGATGGGG+AGG | + | chr7.3:10764310-10764329 | MS.gene007614:CDS | 55.0% |
| ! | TAGCGAGTTGAGAGACCGCA+AGG | + | chr7.3:10764697-10764716 | MS.gene007614:CDS | 55.0% |
| !! | CTGCTTCCGCTGATTCCGTT+TGG | + | chr7.3:10762205-10762224 | MS.gene007614:CDS | 55.0% |
| GAGTTGAGAGACCGCAAGGG+AGG | + | chr7.3:10764701-10764720 | MS.gene007614:CDS | 60.0% | |
| TCAGGGATGTCGCCGAGACT+TGG | - | chr7.3:10762102-10762121 | None:intergenic | 60.0% | |
| TTGAGAGACCGCAAGGGAGG+CGG | + | chr7.3:10764704-10764723 | MS.gene007614:CDS | 60.0% | |
| !! | TACGCGCCGACCGAGTCTTT+TGG | - | chr7.3:10764399-10764418 | None:intergenic | 60.0% |
| GTCGCCGAGACTTGGAGCGA+TGG | - | chr7.3:10762094-10762113 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 10762051 | 10764739 | 10762051 | ID=MS.gene007614 |
| chr7.3 | mRNA | 10762051 | 10764739 | 10762051 | ID=MS.gene007614.t1;Parent=MS.gene007614 |
| chr7.3 | exon | 10762051 | 10762359 | 10762051 | ID=MS.gene007614.t1.exon1;Parent=MS.gene007614.t1 |
| chr7.3 | CDS | 10762051 | 10762359 | 10762051 | ID=cds.MS.gene007614.t1;Parent=MS.gene007614.t1 |
| chr7.3 | exon | 10762449 | 10762567 | 10762449 | ID=MS.gene007614.t1.exon2;Parent=MS.gene007614.t1 |
| chr7.3 | CDS | 10762449 | 10762567 | 10762449 | ID=cds.MS.gene007614.t1;Parent=MS.gene007614.t1 |
| chr7.3 | exon | 10764277 | 10764739 | 10764277 | ID=MS.gene007614.t1.exon3;Parent=MS.gene007614.t1 |
| chr7.3 | CDS | 10764277 | 10764739 | 10764277 | ID=cds.MS.gene007614.t1;Parent=MS.gene007614.t1 |
| Gene Sequence |
| Protein sequence |
