Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008447.t1 | XP_013460480.1 | 93.7 | 270 | 16 | 1 | 1 | 270 | 1 | 269 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008447.t1 | P55871 | 74.1 | 270 | 68 | 2 | 1 | 268 | 1 | 270 | 1.1e-99 | 364.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008447.t1 | A0A072UZG4 | 93.7 | 270 | 16 | 1 | 1 | 270 | 1 | 269 | 8.1e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040581 | MS.gene008447 | PPI |
| MS.gene003452 | MS.gene008447 | PPI |
| MS.gene22877 | MS.gene008447 | PPI |
| MS.gene024538 | MS.gene008447 | PPI |
| MS.gene018560 | MS.gene008447 | PPI |
| MS.gene52139 | MS.gene008447 | PPI |
| MS.gene63721 | MS.gene008447 | PPI |
| MS.gene058030 | MS.gene008447 | PPI |
| MS.gene039110 | MS.gene008447 | PPI |
| MS.gene09852 | MS.gene008447 | PPI |
| MS.gene060216 | MS.gene008447 | PPI |
| MS.gene025997 | MS.gene008447 | PPI |
| MS.gene061898 | MS.gene008447 | PPI |
| MS.gene008447 | MS.gene050556 | PPI |
| MS.gene063366 | MS.gene008447 | PPI |
| MS.gene008447 | MS.gene64519 | PPI |
| MS.gene066163 | MS.gene008447 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008447.t1 | MTR_3g467620 | 98.148 | 270 | 4 | 1 | 1 | 270 | 1 | 269 | 0.0 | 540 |
| MS.gene008447.t1 | MTR_5g075530 | 83.942 | 274 | 39 | 3 | 1 | 269 | 49 | 322 | 4.67e-147 | 414 |
| MS.gene008447.t1 | MTR_5g075530 | 77.457 | 173 | 34 | 3 | 1 | 168 | 49 | 221 | 6.43e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008447.t1 | AT5G20920 | 75.000 | 268 | 62 | 5 | 1 | 265 | 1 | 266 | 2.26e-131 | 373 |
| MS.gene008447.t1 | AT5G20920 | 75.000 | 268 | 62 | 5 | 1 | 265 | 1 | 266 | 2.26e-131 | 373 |
| MS.gene008447.t1 | AT5G20920 | 75.000 | 268 | 61 | 6 | 1 | 265 | 1 | 265 | 4.99e-130 | 369 |
| MS.gene008447.t1 | AT3G07920 | 70.395 | 152 | 37 | 2 | 118 | 265 | 17 | 164 | 9.98e-71 | 215 |
| MS.gene008447.t1 | AT5G01940 | 57.042 | 142 | 56 | 3 | 114 | 254 | 72 | 209 | 6.17e-49 | 161 |
| MS.gene008447.t1 | AT5G01940 | 57.042 | 142 | 56 | 3 | 114 | 254 | 104 | 241 | 8.98e-49 | 162 |
| MS.gene008447.t1 | AT5G01940 | 53.846 | 156 | 63 | 4 | 114 | 262 | 72 | 225 | 9.80e-47 | 156 |
Find 59 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTCTTGCTTGCGGAAC+TGG | 0.130326 | 3.3:-56375384 | MS.gene008447:CDS |
| AAAATTCCTTCGAAGTTCTT+TGG | 0.281091 | 3.3:+56375305 | None:intergenic |
| CGTCGGTCTCCAGCAAGTTC+TGG | 0.286919 | 3.3:+56375831 | None:intergenic |
| TCCTTTGACAGTATTGTGTC+AGG | 0.386643 | 3.3:+56375150 | None:intergenic |
| CCTTGCAACCTCGTTACCCT+TGG | 0.397283 | 3.3:-56376469 | MS.gene008447:CDS |
| GAGAATAATCCAGAACTTGC+TGG | 0.427102 | 3.3:-56375840 | MS.gene008447:CDS |
| GATGAATATGTCATTTGCCT+TGG | 0.446437 | 3.3:-56375183 | MS.gene008447:CDS |
| GGGTTTGACAGTACTTTAGC+TGG | 0.446946 | 3.3:-56376835 | MS.gene008447:CDS |
| GCAACAAAACCAGCCTTGAT+AGG | 0.448200 | 3.3:+56374551 | None:intergenic |
| GTTCTTTCTCCGGTGTGAAA+AGG | 0.449900 | 3.3:-56375118 | MS.gene008447:intron |
| AAGAAAGCCATGACATGATC+TGG | 0.453989 | 3.3:+56375398 | None:intergenic |
| GGTACAAGTGGTTCTCTAGA+TGG | 0.461160 | 3.3:-56375362 | MS.gene008447:CDS |
| CTTGCAACCTCGTTACCCTT+GGG | 0.463993 | 3.3:-56376468 | MS.gene008447:CDS |
| CGTGTTGGCCGTAGGACTGC+GGG | 0.465591 | 3.3:-56374527 | MS.gene008447:CDS |
| TCTAGATGGACAGCAGAGAT+TGG | 0.466810 | 3.3:-56375348 | MS.gene008447:CDS |
| TATTGCTTGCAGTGTGGATC+AGG | 0.472397 | 3.3:-56374587 | MS.gene008447:intron |
| GCTTTCTTGCTTGCGGAACT+GGG | 0.492020 | 3.3:-56375383 | MS.gene008447:CDS |
| AAGATCAGTTGCACCTATCA+AGG | 0.492968 | 3.3:-56374564 | MS.gene008447:CDS |
| TGTCATGGCTTTCTTGCTTG+CGG | 0.497308 | 3.3:-56375390 | MS.gene008447:CDS |
| AGAACCGTTTGTTCTTTCTC+CGG | 0.497985 | 3.3:-56375128 | MS.gene008447:CDS |
| GTGCCCTCACGAAGCACTTG+TGG | 0.500600 | 3.3:+56375789 | None:intergenic |
| CACACCGGAGAAAGAACAAA+CGG | 0.501705 | 3.3:+56375124 | None:intergenic |
| TTGTTGCTCGTGTTGGCCGT+AGG | 0.510944 | 3.3:-56374535 | MS.gene008447:CDS |
| TCAGTTGCACCTATCAAGGC+TGG | 0.525265 | 3.3:-56374560 | MS.gene008447:CDS |
| ATGTCCCTCCCGCAGTCCTA+CGG | 0.525965 | 3.3:+56374519 | None:intergenic |
| GATCATGCTGAAGAGAATGA+AGG | 0.536109 | 3.3:-56376503 | MS.gene008447:CDS |
| AGAGATTGGTTGTGAAGGGA+AGG | 0.537518 | 3.3:-56375334 | MS.gene008447:CDS |
| ATCATGCTGAAGAGAATGAA+GGG | 0.539765 | 3.3:-56376502 | MS.gene008447:CDS |
| TCCTGACACAATACTGTCAA+AGG | 0.542246 | 3.3:-56375151 | MS.gene008447:CDS |
| CAGCAGAGATTGGTTGTGAA+GGG | 0.544525 | 3.3:-56375338 | MS.gene008447:CDS |
| TCATCAAGATCTACCACTGC+GGG | 0.548138 | 3.3:+56377041 | None:intergenic |
| ACCGACGGAGAACTGTTATG+AGG | 0.549889 | 3.3:-56375815 | MS.gene008447:CDS |
| TGAAGCACAGATTGATGTGA+AGG | 0.549994 | 3.3:-56377357 | MS.gene008447:CDS |
| CCCTCACGAAGCACTTGTGG+AGG | 0.572134 | 3.3:+56375792 | None:intergenic |
| ACAGATTGATGTGAAGGAAG+AGG | 0.574813 | 3.3:-56377351 | MS.gene008447:CDS |
| GAGAAGACAGAAAATCTGTC+GGG | 0.576064 | 3.3:-56376996 | MS.gene008447:intron |
| TCGTGTTGGCCGTAGGACTG+CGG | 0.579876 | 3.3:-56374528 | MS.gene008447:CDS |
| GCCTCCACAAGTGCTTCGTG+AGG | 0.584535 | 3.3:-56375793 | MS.gene008447:CDS |
| ACAGCAGAGATTGGTTGTGA+AGG | 0.584946 | 3.3:-56375339 | MS.gene008447:CDS |
| CTTGCGGAACTGGGTACAAG+TGG | 0.589169 | 3.3:-56375374 | MS.gene008447:CDS |
| CACGATCACTTCCTTCCCAA+GGG | 0.589285 | 3.3:+56376453 | None:intergenic |
| GCCTCATAACAGTTCTCCGT+CGG | 0.590654 | 3.3:+56375814 | None:intergenic |
| CAACCTCGTTACCCTTGGGA+AGG | 0.592495 | 3.3:-56376464 | MS.gene008447:CDS |
| TTTGCACCAAAGAACTTCGA+AGG | 0.593663 | 3.3:-56375311 | MS.gene008447:CDS |
| TCACGATCACTTCCTTCCCA+AGG | 0.596987 | 3.3:+56376452 | None:intergenic |
| AATCTGTGCTTCATCTGCCA+TGG | 0.597125 | 3.3:+56377367 | None:intergenic |
| CCAAGGGTAACGAGGTTGCA+AGG | 0.598454 | 3.3:+56376469 | None:intergenic |
| TGAGAAGACAGAAAATCTGT+CGG | 0.602216 | 3.3:-56376997 | MS.gene008447:CDS |
| TGATGATTCAGTAGACAAGT+TGG | 0.613548 | 3.3:-56377021 | MS.gene008447:CDS |
| CTTCCTTCCCAAGGGTAACG+AGG | 0.616919 | 3.3:+56376461 | None:intergenic |
| CCTCCACAAGTGCTTCGTGA+GGG | 0.624335 | 3.3:-56375792 | MS.gene008447:CDS |
| CAGAACTTGCTGGAGACCGA+CGG | 0.631347 | 3.3:-56375830 | MS.gene008447:CDS |
| TCATGCTGAAGAGAATGAAG+GGG | 0.642946 | 3.3:-56376501 | MS.gene008447:CDS |
| GTTGGCCGTAGGACTGCGGG+AGG | 0.652534 | 3.3:-56374524 | MS.gene008447:CDS |
| TCGGCAGCCAGATCATGTCA+TGG | 0.653346 | 3.3:-56375405 | MS.gene008447:CDS |
| TGATCGTGATTATCAATACG+AGG | 0.718816 | 3.3:-56376438 | MS.gene008447:CDS |
| ATCATCAAGATCTACCACTG+CGG | 0.727185 | 3.3:+56377040 | None:intergenic |
| TTGGCCGTAGGACTGCGGGA+GGG | 0.729821 | 3.3:-56374523 | MS.gene008447:CDS |
| TCGTGATTATCAATACGAGG+AGG | 0.739399 | 3.3:-56376435 | MS.gene008447:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATCATTGAAATTGTT+CGG | + | chr3.3:56377156-56377175 | None:intergenic | 15.0% |
| !! | CTAAAAAGAACAAAATATAT+AGG | + | chr3.3:56376680-56376699 | None:intergenic | 15.0% |
| !! | TATAAGAGAAACTATTAAAA+AGG | + | chr3.3:56376948-56376967 | None:intergenic | 15.0% |
| !! | TTAAATTAAAATACACTTTG+TGG | + | chr3.3:56376326-56376345 | None:intergenic | 15.0% |
| !!! | ATATTTTGGAATTTTTAACA+TGG | - | chr3.3:56375691-56375710 | MS.gene008447:intron | 15.0% |
| !!! | ATATTTTTATTGTTGATTGT+AGG | - | chr3.3:56375209-56375228 | MS.gene008447:intron | 15.0% |
| !!! | TATTTTATGCTATTAAGTTT+TGG | - | chr3.3:56374941-56374960 | MS.gene008447:intron | 15.0% |
| !! | AATTCTTAAGGGAAATTAAT+TGG | - | chr3.3:56375326-56375345 | MS.gene008447:CDS | 20.0% |
| !! | AGACATAAACAAAATGATAA+TGG | + | chr3.3:56376433-56376452 | None:intergenic | 20.0% |
| !! | GTAATTTATTATTCAGTTGT+TGG | - | chr3.3:56376170-56376189 | MS.gene008447:intron | 20.0% |
| !! | GTTATCAATTTCTTAATTTC+AGG | + | chr3.3:56376869-56376888 | None:intergenic | 20.0% |
| !! | TTAATTTCCCTTAAGAATTA+AGG | + | chr3.3:56375325-56375344 | None:intergenic | 20.0% |
| !!! | AACTGTTTTTGTGAATTTTA+TGG | - | chr3.3:56376122-56376141 | MS.gene008447:intron | 20.0% |
| !!! | ATCTTTTACTTTATGATGAT+GGG | - | chr3.3:56377253-56377272 | MS.gene008447:intron | 20.0% |
| !!! | CTTTATTTCCTTAAATTGTA+GGG | + | chr3.3:56377213-56377232 | None:intergenic | 20.0% |
| !!! | GATTTGAAATATTCAACTTA+AGG | + | chr3.3:56377044-56377063 | None:intergenic | 20.0% |
| !!! | GATTTTAATGCAATATAGAA+AGG | + | chr3.3:56376399-56376418 | None:intergenic | 20.0% |
| !!! | TATCTTTTACTTTATGATGA+TGG | - | chr3.3:56377252-56377271 | MS.gene008447:intron | 20.0% |
| !!! | TTTATGCTACTTTTCATATT+TGG | - | chr3.3:56375592-56375611 | MS.gene008447:intron | 20.0% |
| !!! | TTTTTCTTCTTCTTTTTAGT+AGG | + | chr3.3:56374817-56374836 | None:intergenic | 20.0% |
| ! | AATCTGCAATTAACAAATTC+AGG | + | chr3.3:56374782-56374801 | None:intergenic | 25.0% |
| ! | ACAATTTAAGGAAATAAAGC+AGG | - | chr3.3:56377214-56377233 | MS.gene008447:intron | 25.0% |
| ! | ATATAAACACATATTTGAGG+AGG | + | chr3.3:56375744-56375763 | None:intergenic | 25.0% |
| ! | ATATCATGCCTTAATTCTTA+AGG | - | chr3.3:56375314-56375333 | MS.gene008447:CDS | 25.0% |
| ! | ATTCAGTTGAGAAACATTTA+TGG | + | chr3.3:56375566-56375585 | None:intergenic | 25.0% |
| ! | CAATTTAAGGAAATAAAGCA+GGG | - | chr3.3:56377215-56377234 | MS.gene008447:intron | 25.0% |
| ! | GTGGTTATTTGAGAAAATTA+GGG | + | chr3.3:56376307-56376326 | None:intergenic | 25.0% |
| ! | TATAAATTGTGTTTGAGAGT+TGG | + | chr3.3:56375297-56375316 | None:intergenic | 25.0% |
| ! | TATCATGCCTTAATTCTTAA+GGG | - | chr3.3:56375315-56375334 | MS.gene008447:CDS | 25.0% |
| ! | TCCATATAAACACATATTTG+AGG | + | chr3.3:56375747-56375766 | None:intergenic | 25.0% |
| ! | TCCTCAAATATGTGTTTATA+TGG | - | chr3.3:56375743-56375762 | MS.gene008447:intron | 25.0% |
| ! | TGTGGTTATTTGAGAAAATT+AGG | + | chr3.3:56376308-56376327 | None:intergenic | 25.0% |
| !! | CAGTCTCTAAAAACAAATTA+CGG | + | chr3.3:56377179-56377198 | None:intergenic | 25.0% |
| !! | CTTTCATAAGCAATTTTTCA+TGG | + | chr3.3:56377075-56377094 | None:intergenic | 25.0% |
| !! | TACTTTTCATATTTGGATAG+TGG | - | chr3.3:56375599-56375618 | MS.gene008447:intron | 25.0% |
| !!! | AATTTGAAACATTTTCCTAC+AGG | + | chr3.3:56377010-56377029 | None:intergenic | 25.0% |
| !!! | AGGTAGTATTTGTTTAGTTT+TGG | - | chr3.3:56375943-56375962 | MS.gene008447:intron | 25.0% |
| !!! | ATTTTGGTAGTTTTATGCAT+TGG | - | chr3.3:56374579-56374598 | MS.gene008447:intron | 25.0% |
| !!! | GCTTTATTTCCTTAAATTGT+AGG | + | chr3.3:56377214-56377233 | None:intergenic | 25.0% |
| !!! | TAAGTTTGCACAATTGATTT+TGG | - | chr3.3:56374563-56374582 | MS.gene008447:CDS | 25.0% |
| !!! | TGTTTTTTGATAGAACACTA+TGG | + | chr3.3:56376896-56376915 | None:intergenic | 25.0% |
| !!! | TTCAAATCTCTTTGATTTGT+TGG | - | chr3.3:56374720-56374739 | MS.gene008447:intron | 25.0% |
| !!! | TTCTTTTTAGTAGGATCAAA+TGG | + | chr3.3:56374808-56374827 | None:intergenic | 25.0% |
| AAAATTCCTTCGAAGTTCTT+TGG | + | chr3.3:56376580-56376599 | None:intergenic | 30.0% | |
| AATTAGAATTGTTCAAGGAC+AGG | + | chr3.3:56375003-56375022 | None:intergenic | 30.0% | |
| AGGCTAATTAGAATTGTTCA+AGG | + | chr3.3:56375008-56375027 | None:intergenic | 30.0% | |
| ATATATCACGAAGCTATTGT+TGG | + | chr3.3:56375850-56375869 | None:intergenic | 30.0% | |
| ATATATCAGTAAGTATCTCG+TGG | - | chr3.3:56376606-56376625 | MS.gene008447:intron | 30.0% | |
| CAATAATTCAAATGACCTAC+AGG | + | chr3.3:56375095-56375114 | None:intergenic | 30.0% | |
| CACAGCCTATAAAACTAATA+TGG | + | chr3.3:56375652-56375671 | None:intergenic | 30.0% | |
| GCTACATGTATAATACATGT+AGG | - | chr3.3:56376192-56376211 | MS.gene008447:intron | 30.0% | |
| GTAGGTCATTTGAATTATTG+TGG | - | chr3.3:56375095-56375114 | MS.gene008447:intron | 30.0% | |
| GTTTCTCTTATAGTCTTTCT+AGG | - | chr3.3:56376956-56376975 | MS.gene008447:intron | 30.0% | |
| TAACAAATTCAGGCATTAGA+AGG | + | chr3.3:56374772-56374791 | None:intergenic | 30.0% | |
| TAACATCACCCTACAATTTA+AGG | - | chr3.3:56377202-56377221 | MS.gene008447:intron | 30.0% | |
| TGAGAAACATTTATGGAACT+AGG | + | chr3.3:56375559-56375578 | None:intergenic | 30.0% | |
| TTGAGTCGTTGTTGTATTAT+TGG | - | chr3.3:56375814-56375833 | MS.gene008447:CDS | 30.0% | |
| ! | AATCAACTTACGTTTTGCAA+AGG | + | chr3.3:56376149-56376168 | None:intergenic | 30.0% |
| ! | AATTTTACACCGCATTTCAA+GGG | + | chr3.3:56375513-56375532 | None:intergenic | 30.0% |
| ! | ATAGGTCAATTTTTACTCGA+AGG | + | chr3.3:56376662-56376681 | None:intergenic | 30.0% |
| ! | GCAATTTTTCATGGATCAAT+TGG | + | chr3.3:56377066-56377085 | None:intergenic | 30.0% |
| ! | GCATTTTCTTCTGTTATCAT+AGG | - | chr3.3:56375923-56375942 | MS.gene008447:intron | 30.0% |
| ! | GTGACTGGTTATAACTTATA+AGG | - | chr3.3:56374622-56374641 | MS.gene008447:intron | 30.0% |
| ! | TAATTTTACACCGCATTTCA+AGG | + | chr3.3:56375514-56375533 | None:intergenic | 30.0% |
| ! | TAGTGACTTGTATTCTTAGT+TGG | - | chr3.3:56374694-56374713 | MS.gene008447:intron | 30.0% |
| !! | AATGATAATGGAAGACAAGT+AGG | + | chr3.3:56376421-56376440 | None:intergenic | 30.0% |
| !! | AGTTTTATAGGCTGTGTTTT+GGG | - | chr3.3:56375656-56375675 | MS.gene008447:intron | 30.0% |
| !! | TACATGTAGGCATGTTTTTA+TGG | - | chr3.3:56376205-56376224 | MS.gene008447:intron | 30.0% |
| !!! | GTCTTTAATGTTATTTTCCG+AGG | - | chr3.3:56374963-56374982 | MS.gene008447:intron | 30.0% |
| !!! | TAGTTTTATAGGCTGTGTTT+TGG | - | chr3.3:56375655-56375674 | MS.gene008447:intron | 30.0% |
| !!! | TGTCGCCATATTAGTTTTAT+AGG | - | chr3.3:56375644-56375663 | MS.gene008447:intron | 30.0% |
| AACATTTATGGAACTAGGTG+AGG | + | chr3.3:56375554-56375573 | None:intergenic | 35.0% | |
| AATTTCAGGAACCAATTCAC+CGG | + | chr3.3:56376855-56376874 | None:intergenic | 35.0% | |
| ACATTTATGGAACTAGGTGA+GGG | + | chr3.3:56375553-56375572 | None:intergenic | 35.0% | |
| ATCATGCTGAAGAGAATGAA+GGG | - | chr3.3:56375380-56375399 | MS.gene008447:CDS | 35.0% | |
| ATGTATATCTCTGCAACCTA+CGG | - | chr3.3:56376816-56376835 | MS.gene008447:CDS | 35.0% | |
| CAATTGTGCAAACTTACATC+AGG | + | chr3.3:56374559-56374578 | None:intergenic | 35.0% | |
| CAGTCACATGAAACATGTAT+AGG | + | chr3.3:56374609-56374628 | None:intergenic | 35.0% | |
| CGTTGTTGTATTATTGGTGT+GGG | - | chr3.3:56375820-56375839 | MS.gene008447:CDS | 35.0% | |
| CTATACATGTTTCATGTGAC+TGG | - | chr3.3:56374607-56374626 | MS.gene008447:intron | 35.0% | |
| GATATACATAGAGAGGGAAT+AGG | + | chr3.3:56376805-56376824 | None:intergenic | 35.0% | |
| GTTGTTGTATTATTGGTGTG+GGG | - | chr3.3:56375821-56375840 | MS.gene008447:CDS | 35.0% | |
| TATATGGATTCTGCTCTCAA+GGG | - | chr3.3:56375759-56375778 | MS.gene008447:CDS | 35.0% | |
| TCGTTGTTGTATTATTGGTG+TGG | - | chr3.3:56375819-56375838 | MS.gene008447:CDS | 35.0% | |
| TCTCCAACTCATTAATCTCT+AGG | - | chr3.3:56376921-56376940 | MS.gene008447:intron | 35.0% | |
| TGAGAAGACAGAAAATCTGT+CGG | - | chr3.3:56374885-56374904 | MS.gene008447:intron | 35.0% | |
| TGATCGTGATTATCAATACG+AGG | - | chr3.3:56375444-56375463 | MS.gene008447:intron | 35.0% | |
| TGATGATTCAGTAGACAAGT+TGG | - | chr3.3:56374861-56374880 | MS.gene008447:intron | 35.0% | |
| TGATGCGAAAAATGACGATT+TGG | - | chr3.3:56375263-56375282 | MS.gene008447:intron | 35.0% | |
| TGCAGAGATATACATAGAGA+GGG | + | chr3.3:56376811-56376830 | None:intergenic | 35.0% | |
| TTATATGGATTCTGCTCTCA+AGG | - | chr3.3:56375758-56375777 | MS.gene008447:CDS | 35.0% | |
| TTCCTACAGGATATATGAGT+TGG | + | chr3.3:56376997-56377016 | None:intergenic | 35.0% | |
| TTGCAGAGATATACATAGAG+AGG | + | chr3.3:56376812-56376831 | None:intergenic | 35.0% | |
| TTTGATAGAACACTATGGCT+TGG | + | chr3.3:56376891-56376910 | None:intergenic | 35.0% | |
| ! | AAACCTAGACGCATTTTCTT+AGG | - | chr3.3:56376231-56376250 | MS.gene008447:intron | 35.0% |
| ! | AACAACATGAAAAGCACATC+AGG | - | chr3.3:56376347-56376366 | MS.gene008447:intron | 35.0% |
| ! | ATGTTTTTCTGTGCAGCTTT+TGG | - | chr3.3:56375996-56376015 | MS.gene008447:intron | 35.0% |
| ! | CGCATTTTCTTAGGTGATTT+TGG | - | chr3.3:56376240-56376259 | MS.gene008447:intron | 35.0% |
| ! | GAAATTTCACCTTTTCACAC+CGG | + | chr3.3:56376776-56376795 | None:intergenic | 35.0% |
| ! | GATGAATATGTCATTTGCCT+TGG | - | chr3.3:56376699-56376718 | MS.gene008447:intron | 35.0% |
| ! | TATTTGGATAGTGGTTCTTG+TGG | - | chr3.3:56375608-56375627 | MS.gene008447:intron | 35.0% |
| ! | TGTTTTTCTGTGCAGCTTTT+GGG | - | chr3.3:56375997-56376016 | MS.gene008447:intron | 35.0% |
| !! | CTTTTAACTGCAGTTTCTGA+GGG | - | chr3.3:56375026-56375045 | MS.gene008447:intron | 35.0% |
| !! | TCTCTACTTTTGCTCTTTGT+TGG | - | chr3.3:56375888-56375907 | MS.gene008447:intron | 35.0% |
| !! | TTTTAACTGCAGTTTCTGAG+GGG | - | chr3.3:56375027-56375046 | MS.gene008447:intron | 35.0% |
| AAGAAAGCCATGACATGATC+TGG | + | chr3.3:56376487-56376506 | None:intergenic | 40.0% | |
| AAGAAGAAGAAGAAGCCTGT+AGG | - | chr3.3:56375077-56375096 | MS.gene008447:intron | 40.0% | |
| AAGATCAGTTGCACCTATCA+AGG | - | chr3.3:56377318-56377337 | MS.gene008447:intron | 40.0% | |
| ACAGATTGATGTGAAGGAAG+AGG | - | chr3.3:56374531-56374550 | MS.gene008447:CDS | 40.0% | |
| AGAACCGTTTGTTCTTTCTC+CGG | - | chr3.3:56376754-56376773 | MS.gene008447:intron | 40.0% | |
| ATCATCAAGATCTACCACTG+CGG | + | chr3.3:56374845-56374864 | None:intergenic | 40.0% | |
| ATTCTCTTCAGCATGATCTG+AGG | + | chr3.3:56375377-56375396 | None:intergenic | 40.0% | |
| CCTCAGAAACTGCAGTTAAA+AGG | + | chr3.3:56375028-56375047 | None:intergenic | 40.0% | |
| CTCCAACTCATATATCCTGT+AGG | - | chr3.3:56376992-56377011 | MS.gene008447:intron | 40.0% | |
| GAGAAGACAGAAAATCTGTC+GGG | - | chr3.3:56374886-56374905 | MS.gene008447:intron | 40.0% | |
| GAGAATAATCCAGAACTTGC+TGG | - | chr3.3:56376042-56376061 | MS.gene008447:intron | 40.0% | |
| GATCATGCTGAAGAGAATGA+AGG | - | chr3.3:56375379-56375398 | MS.gene008447:CDS | 40.0% | |
| GGACCTAGAGATTAATGAGT+TGG | + | chr3.3:56376927-56376946 | None:intergenic | 40.0% | |
| TCACCTAAGAAAATGCGTCT+AGG | + | chr3.3:56376237-56376256 | None:intergenic | 40.0% | |
| TCATGCTGAAGAGAATGAAG+GGG | - | chr3.3:56375381-56375400 | MS.gene008447:CDS | 40.0% | |
| TCCTGACACAATACTGTCAA+AGG | - | chr3.3:56376731-56376750 | MS.gene008447:intron | 40.0% | |
| TCCTTTGACAGTATTGTGTC+AGG | + | chr3.3:56376735-56376754 | None:intergenic | 40.0% | |
| TCGTGATTATCAATACGAGG+AGG | - | chr3.3:56375447-56375466 | MS.gene008447:intron | 40.0% | |
| TGAAGCACAGATTGATGTGA+AGG | - | chr3.3:56374525-56374544 | MS.gene008447:CDS | 40.0% | |
| TTTGCACCAAAGAACTTCGA+AGG | - | chr3.3:56376571-56376590 | MS.gene008447:intron | 40.0% | |
| ! | GCGAAAAATGACGATTTGGA+TGG | - | chr3.3:56375267-56375286 | MS.gene008447:intron | 40.0% |
| ! | GTCTTGCTACCTTGTCTTTT+AGG | - | chr3.3:56376449-56376468 | MS.gene008447:CDS | 40.0% |
| ! | TATATGAGTTGGAGACCTAG+AGG | + | chr3.3:56376986-56377005 | None:intergenic | 40.0% |
| !! | CCTTTTAACTGCAGTTTCTG+AGG | - | chr3.3:56375025-56375044 | MS.gene008447:intron | 40.0% |
| !! | TTATAGGCTGTGTTTTGGGT+GGG | - | chr3.3:56375660-56375679 | MS.gene008447:intron | 40.0% |
| !! | TTTATAGGCTGTGTTTTGGG+TGG | - | chr3.3:56375659-56375678 | MS.gene008447:intron | 40.0% |
| !!! | CCTTGTCTTTTAGGATGCAT+CGG | - | chr3.3:56376458-56376477 | MS.gene008447:CDS | 40.0% |
| AGGCACAATAACAGATGCCT+CGG | + | chr3.3:56374983-56375002 | None:intergenic | 45.0% | |
| CACACCGGAGAAAGAACAAA+CGG | + | chr3.3:56376761-56376780 | None:intergenic | 45.0% | |
| CCGATGCATCCTAAAAGACA+AGG | + | chr3.3:56376461-56376480 | None:intergenic | 45.0% | |
| GCAACAAAACCAGCCTTGAT+AGG | + | chr3.3:56377334-56377353 | None:intergenic | 45.0% | |
| GGGTTTGACAGTACTTTAGC+TGG | - | chr3.3:56375047-56375066 | MS.gene008447:intron | 45.0% | |
| GGTACAAGTGGTTCTCTAGA+TGG | - | chr3.3:56376520-56376539 | MS.gene008447:intron | 45.0% | |
| GTAGTGTATTGCTTGCAGTG+TGG | - | chr3.3:56377289-56377308 | MS.gene008447:intron | 45.0% | |
| GTCTTTCTAGGTCTTCCTCT+AGG | - | chr3.3:56376968-56376987 | MS.gene008447:intron | 45.0% | |
| GTTCTTTCTCCGGTGTGAAA+AGG | - | chr3.3:56376764-56376783 | MS.gene008447:intron | 45.0% | |
| TATGCCTCTCCCTTGAAATG+CGG | - | chr3.3:56375501-56375520 | MS.gene008447:intron | 45.0% | |
| TATTGCTTGCAGTGTGGATC+AGG | - | chr3.3:56377295-56377314 | MS.gene008447:intron | 45.0% | |
| TCATCAAGATCTACCACTGC+GGG | + | chr3.3:56374844-56374863 | None:intergenic | 45.0% | |
| TCTAGATGGACAGCAGAGAT+TGG | - | chr3.3:56376534-56376553 | MS.gene008447:intron | 45.0% | |
| TGTCATGGCTTTCTTGCTTG+CGG | - | chr3.3:56376492-56376511 | MS.gene008447:CDS | 45.0% | |
| ! | ACAGCAGAGATTGGTTGTGA+AGG | - | chr3.3:56376543-56376562 | MS.gene008447:intron | 45.0% |
| ! | AGAGATTGGTTGTGAAGGGA+AGG | - | chr3.3:56376548-56376567 | MS.gene008447:intron | 45.0% |
| ! | CAGCAGAGATTGGTTGTGAA+GGG | - | chr3.3:56376544-56376563 | MS.gene008447:intron | 45.0% |
| ! | GGTGGGGTCTTTGCATATTT+TGG | - | chr3.3:56375677-56375696 | MS.gene008447:intron | 45.0% |
| ! | TGTCAGGACTTTTGCATCCA+AGG | + | chr3.3:56376719-56376738 | None:intergenic | 45.0% |
| !! | TATAGGCTGTGTTTTGGGTG+GGG | - | chr3.3:56375661-56375680 | MS.gene008447:intron | 45.0% |
| ACCGACGGAGAACTGTTATG+AGG | - | chr3.3:56376067-56376086 | MS.gene008447:intron | 50.0% | |
| CACGATCACTTCCTTCCCAA+GGG | + | chr3.3:56375432-56375451 | None:intergenic | 50.0% | |
| CTACGGAAATTGTAGAGCGC+CGG | - | chr3.3:56376833-56376852 | MS.gene008447:CDS | 50.0% | |
| CTTGCAACCTCGTTACCCTT+GGG | - | chr3.3:56375414-56375433 | MS.gene008447:CDS | 50.0% | |
| GAAGAAAAAGAAGCCCGCAG+TGG | - | chr3.3:56374828-56374847 | MS.gene008447:intron | 50.0% | |
| GCCTCATAACAGTTCTCCGT+CGG | + | chr3.3:56376071-56376090 | None:intergenic | 50.0% | |
| GCTTTCTTGCTTGCGGAACT+GGG | - | chr3.3:56376499-56376518 | MS.gene008447:CDS | 50.0% | |
| TACACCGCATTTCAAGGGAG+AGG | + | chr3.3:56375508-56375527 | None:intergenic | 50.0% | |
| TCACGATCACTTCCTTCCCA+AGG | + | chr3.3:56375433-56375452 | None:intergenic | 50.0% | |
| TCAGTTGCACCTATCAAGGC+TGG | - | chr3.3:56377322-56377341 | MS.gene008447:intron | 50.0% | |
| ! | TTCTGTGCAGCTTTTGGGCA+GGG | - | chr3.3:56376002-56376021 | MS.gene008447:intron | 50.0% |
| ! | TTTCTGTGCAGCTTTTGGGC+AGG | - | chr3.3:56376001-56376020 | MS.gene008447:intron | 50.0% |
| !! | ATTGTAGAGCGCCGGTGAAT+TGG | - | chr3.3:56376841-56376860 | MS.gene008447:CDS | 50.0% |
| !!! | GCTGGTTTTGTTGCTCGTGT+TGG | - | chr3.3:56377340-56377359 | MS.gene008447:intron | 50.0% |
| CAACCTCGTTACCCTTGGGA+AGG | - | chr3.3:56375418-56375437 | MS.gene008447:intron | 55.0% | |
| CCAAGGGTAACGAGGTTGCA+AGG | + | chr3.3:56375416-56375435 | None:intergenic | 55.0% | |
| CCTCCACAAGTGCTTCGTGA+GGG | - | chr3.3:56376090-56376109 | MS.gene008447:intron | 55.0% | |
| CCTTGCAACCTCGTTACCCT+TGG | - | chr3.3:56375413-56375432 | MS.gene008447:CDS | 55.0% | |
| CGGCGCTCTACAATTTCCGT+AGG | + | chr3.3:56376835-56376854 | None:intergenic | 55.0% | |
| CTTCCTTCCCAAGGGTAACG+AGG | + | chr3.3:56375424-56375443 | None:intergenic | 55.0% | |
| CTTGCGGAACTGGGTACAAG+TGG | - | chr3.3:56376508-56376527 | MS.gene008447:intron | 55.0% | |
| GGCTTTCTTGCTTGCGGAAC+TGG | - | chr3.3:56376498-56376517 | MS.gene008447:CDS | 55.0% | |
| TCGGCAGCCAGATCATGTCA+TGG | - | chr3.3:56376477-56376496 | MS.gene008447:CDS | 55.0% | |
| ! | TTGTTGCTCGTGTTGGCCGT+AGG | - | chr3.3:56377347-56377366 | MS.gene008447:CDS | 55.0% |
| !! | CAGAACTTGCTGGAGACCGA+CGG | - | chr3.3:56376052-56376071 | MS.gene008447:intron | 55.0% |
| ATGTCCCTCCCGCAGTCCTA+CGG | + | chr3.3:56377366-56377385 | None:intergenic | 60.0% | |
| CGTCGGTCTCCAGCAAGTTC+TGG | + | chr3.3:56376054-56376073 | None:intergenic | 60.0% | |
| GCCTCCACAAGTGCTTCGTG+AGG | - | chr3.3:56376089-56376108 | MS.gene008447:intron | 60.0% | |
| ! | CCCTCACGAAGCACTTGTGG+AGG | + | chr3.3:56376093-56376112 | None:intergenic | 60.0% |
| ! | GTGCCCTCACGAAGCACTTG+TGG | + | chr3.3:56376096-56376115 | None:intergenic | 60.0% |
| ! | TCGTGTTGGCCGTAGGACTG+CGG | - | chr3.3:56377354-56377373 | MS.gene008447:CDS | 60.0% |
| TTGGCCGTAGGACTGCGGGA+GGG | - | chr3.3:56377359-56377378 | MS.gene008447:CDS | 65.0% | |
| ! | CGTGTTGGCCGTAGGACTGC+GGG | - | chr3.3:56377355-56377374 | MS.gene008447:CDS | 65.0% |
| GTTGGCCGTAGGACTGCGGG+AGG | - | chr3.3:56377358-56377377 | MS.gene008447:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 56374517 | 56377387 | 56374517 | ID=MS.gene008447 |
| chr3.3 | mRNA | 56374517 | 56377387 | 56374517 | ID=MS.gene008447.t1;Parent=MS.gene008447 |
| chr3.3 | exon | 56377343 | 56377387 | 56377343 | ID=MS.gene008447.t1.exon1;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56377343 | 56377387 | 56377343 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56376997 | 56377105 | 56376997 | ID=MS.gene008447.t1.exon2;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56376997 | 56377105 | 56376997 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56376810 | 56376865 | 56376810 | ID=MS.gene008447.t1.exon3;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56376810 | 56376865 | 56376810 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56376616 | 56376673 | 56376616 | ID=MS.gene008447.t1.exon4;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56376616 | 56376673 | 56376616 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56376436 | 56376524 | 56376436 | ID=MS.gene008447.t1.exon5;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56376436 | 56376524 | 56376436 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56375747 | 56375892 | 56375747 | ID=MS.gene008447.t1.exon6;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56375747 | 56375892 | 56375747 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56375291 | 56375433 | 56375291 | ID=MS.gene008447.t1.exon7;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56375291 | 56375433 | 56375291 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56375119 | 56375204 | 56375119 | ID=MS.gene008447.t1.exon8;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56375119 | 56375204 | 56375119 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| chr3.3 | exon | 56374517 | 56374597 | 56374517 | ID=MS.gene008447.t1.exon9;Parent=MS.gene008447.t1 |
| chr3.3 | CDS | 56374517 | 56374597 | 56374517 | ID=cds.MS.gene008447.t1;Parent=MS.gene008447.t1 |
| Gene Sequence |
| Protein sequence |
