Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003452.t1 | CAA61298.1 | 95.9 | 267 | 10 | 1 | 353 | 619 | 370 | 635 | 1.50E-103 | 387.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003452.t1 | Q7XTT4 | 57.9 | 190 | 78 | 2 | 353 | 541 | 443 | 631 | 1.1e-54 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003452.t1 | Q40363 | 95.9 | 267 | 10 | 1 | 353 | 619 | 370 | 635 | 1.1e-103 | 387.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003452.t1 | MTR_4g074930 | 88.848 | 538 | 49 | 5 | 14 | 544 | 28 | 561 | 0.0 | 664 |
| MS.gene003452.t1 | MTR_4g074930 | 86.617 | 538 | 49 | 6 | 14 | 544 | 28 | 549 | 0.0 | 661 |
| MS.gene003452.t1 | MTR_4g074930 | 83.829 | 538 | 41 | 4 | 14 | 544 | 28 | 526 | 0.0 | 620 |
| MS.gene003452.t1 | MTR_4g074930 | 81.599 | 538 | 41 | 5 | 14 | 544 | 28 | 514 | 0.0 | 619 |
| MS.gene003452.t1 | MTR_1g036430 | 42.636 | 258 | 119 | 6 | 328 | 567 | 415 | 661 | 4.27e-41 | 159 |
| MS.gene003452.t1 | MTR_1g036430 | 49.306 | 144 | 68 | 4 | 335 | 474 | 269 | 411 | 8.60e-35 | 140 |
| MS.gene003452.t1 | MTR_3g050860 | 67.677 | 99 | 21 | 1 | 346 | 444 | 254 | 341 | 6.97e-36 | 139 |
| MS.gene003452.t1 | MTR_3g050860 | 48.696 | 115 | 21 | 5 | 14 | 126 | 159 | 237 | 2.06e-12 | 69.3 |
| MS.gene003452.t1 | MTR_3g050860 | 66.071 | 56 | 16 | 1 | 108 | 163 | 185 | 237 | 4.28e-11 | 65.5 |
| MS.gene003452.t1 | MTR_8g432580 | 88.000 | 75 | 9 | 0 | 18 | 92 | 52 | 126 | 5.44e-23 | 96.3 |
| MS.gene003452.t1 | MTR_4g094260 | 31.395 | 172 | 102 | 6 | 296 | 457 | 3 | 168 | 5.11e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003452.t1 | AT3G18610 | 50.333 | 300 | 130 | 12 | 325 | 619 | 320 | 605 | 1.74e-71 | 242 |
| MS.gene003452.t1 | AT3G18610 | 50.333 | 300 | 130 | 12 | 325 | 619 | 290 | 575 | 1.80e-71 | 241 |
| MS.gene003452.t1 | AT3G18610 | 50.333 | 300 | 130 | 12 | 325 | 619 | 350 | 635 | 1.88e-71 | 243 |
| MS.gene003452.t1 | AT1G45100 | 45.238 | 84 | 46 | 0 | 348 | 431 | 236 | 319 | 7.40e-12 | 68.6 |
Find 163 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACCAGATTCATAATCTTT+AGG | 0.228104 | 4.3:-32542882 | None:intergenic |
| AACCAGATTCATAATCTTTA+GGG | 0.230306 | 4.3:-32542881 | None:intergenic |
| CTGGTCTCATTTGGTGTAGC+TGG | 0.234972 | 4.3:-32542022 | None:intergenic |
| GCTAAATTGATGGAGCATTT+TGG | 0.237940 | 4.3:+32542825 | MS.gene003452:CDS |
| GATGGGGATGGAGTATTTAA+AGG | 0.245284 | 4.3:+32542238 | MS.gene003452:CDS |
| GAAGAATCATCTTTCTTTGC+AGG | 0.246216 | 4.3:-32540653 | None:intergenic |
| AGTAATTACCTATTATTATT+AGG | 0.251107 | 4.3:-32542496 | None:intergenic |
| TTTGGTGTAGCTGGGGTATT+AGG | 0.268355 | 4.3:-32542013 | None:intergenic |
| TTCACTAACCTCTTTCTTAG+AGG | 0.273370 | 4.3:-32541406 | None:intergenic |
| ATGGTTGATGCTGGCAAATC+TGG | 0.301012 | 4.3:+32541879 | MS.gene003452:CDS |
| CTGGCCTCTTCCACCACTTT+GGG | 0.301540 | 4.3:-32542626 | None:intergenic |
| GGTGGAAGAAGCGGTGGATT+TGG | 0.317426 | 4.3:+32543197 | MS.gene003452:CDS |
| CATTTACTCCTAATAATAAT+AGG | 0.329724 | 4.3:+32542488 | MS.gene003452:CDS |
| CCTCTGAAGTGGTCTCTGGC+TGG | 0.335134 | 4.3:-32540082 | None:intergenic |
| GAACTTGCAGCTTTCTTTGT+GGG | 0.341562 | 4.3:-32541084 | None:intergenic |
| AGAGGAGGAGGAGGTCGATT+TGG | 0.344817 | 4.3:+32543236 | MS.gene003452:CDS |
| TCAGATAAGAGCTAAATTGA+TGG | 0.346839 | 4.3:+32542815 | MS.gene003452:intron |
| ATTGAAAACACCTCAGAAAA+AGG | 0.347750 | 4.3:+32541738 | MS.gene003452:CDS |
| GAAGTATCATCTTTCTTTGC+GGG | 0.350810 | 4.3:-32540391 | None:intergenic |
| ATCCCTAAAGATTATGAATC+TGG | 0.352672 | 4.3:+32542879 | MS.gene003452:CDS |
| TGCCTATATCAAAGTCAAAA+TGG | 0.360378 | 4.3:-32539728 | None:intergenic |
| GATGGAGTATTTAAAGGCTT+TGG | 0.363032 | 4.3:+32542244 | MS.gene003452:CDS |
| TTAGCTGGGGTCTTCTTTGA+AGG | 0.364114 | 4.3:-32540038 | None:intergenic |
| TTAGGGATTGACACCCTTGT+AGG | 0.366397 | 4.3:-32542864 | None:intergenic |
| TTTGAGCCACTGGTCTCATT+TGG | 0.369919 | 4.3:-32542031 | None:intergenic |
| TGTTCACAGGTTTGCATACA+TGG | 0.371589 | 4.3:+32543016 | MS.gene003452:intron |
| ACCTTGACTATCTCTAGGTT+TGG | 0.378375 | 4.3:-32543123 | None:intergenic |
| CTCTGAAGTGGTCTCTGGCT+GGG | 0.379329 | 4.3:-32540081 | None:intergenic |
| AGGAGTGGTGGTGGTCGATT+TGG | 0.380127 | 4.3:+32543170 | MS.gene003452:CDS |
| AGGAGTGGTGGAAGAGGAGG+AGG | 0.384008 | 4.3:+32543224 | MS.gene003452:CDS |
| ATGCTAATAGCTTACACTTT+GGG | 0.402090 | 4.3:-32542296 | None:intergenic |
| ACTGGCCTCTTCCACCACTT+TGG | 0.404674 | 4.3:-32542627 | None:intergenic |
| GCTCAAAGACATTATTTGTT+GGG | 0.408855 | 4.3:+32542047 | MS.gene003452:CDS |
| GGAGGAGGAGGTCGATTTGG+TGG | 0.415408 | 4.3:+32543239 | MS.gene003452:CDS |
| GATTCCTCTGAAGTGGTCTC+TGG | 0.415465 | 4.3:-32540086 | None:intergenic |
| CCTAGAGATAGTCAAGGTTC+TGG | 0.420795 | 4.3:+32543128 | MS.gene003452:CDS |
| CACTTCTTCCTCATCGGAAG+AGG | 0.423585 | 4.3:-32540126 | None:intergenic |
| AGTGGTGGAAGAGGAGGAGG+AGG | 0.428067 | 4.3:+32543227 | MS.gene003452:CDS |
| TGGTCTCATTTGGTGTAGCT+GGG | 0.430539 | 4.3:-32542021 | None:intergenic |
| AGTCTCAAACAGTATTTGTC+AGG | 0.432245 | 4.3:+32542647 | MS.gene003452:CDS |
| GAGCACGATGCAACAGTTCT+TGG | 0.434082 | 4.3:-32542435 | None:intergenic |
| AGTGGTGGTGGTCGATTTGG+TGG | 0.436467 | 4.3:+32543173 | MS.gene003452:CDS |
| GAAGGAACAGCTTTAGCTGC+AGG | 0.441481 | 4.3:-32540614 | None:intergenic |
| CGCCAAGCAAAAGGCGTTGA+AGG | 0.441849 | 4.3:+32539815 | MS.gene003452:CDS |
| GAAAATTTCTTCCAAGGTTG+CGG | 0.442385 | 4.3:+32542187 | MS.gene003452:CDS |
| AACGTTTCACGTCGAAGGAC+AGG | 0.443778 | 4.3:-32542072 | None:intergenic |
| GGTAGGAGTGGTGGAAGAGG+AGG | 0.445688 | 4.3:+32543221 | MS.gene003452:CDS |
| GGAAGGGATAGTGGCGGTAG+AGG | 0.446801 | 4.3:+32543260 | MS.gene003452:CDS |
| GGTGGTCGATTTGGTGGAGG+TGG | 0.450277 | 4.3:+32543179 | MS.gene003452:CDS |
| CGATTTGGTGGAAGGGATAG+TGG | 0.450518 | 4.3:+32543251 | MS.gene003452:CDS |
| GGTGGTAGGAGTGGTGGAAG+AGG | 0.452249 | 4.3:+32543218 | MS.gene003452:CDS |
| GGTTCTGGTGGTAGAGGTGG+AGG | 0.454259 | 4.3:+32543143 | MS.gene003452:CDS |
| GAGGAGGTCGATTTGGTGGA+AGG | 0.455773 | 4.3:+32543243 | MS.gene003452:CDS |
| GGCTCAAAGACATTATTTGT+TGG | 0.457432 | 4.3:+32542046 | MS.gene003452:CDS |
| GGGGTCTTCTTTGAAGGAGC+AGG | 0.459580 | 4.3:-32540032 | None:intergenic |
| GACTTGATTTAGCTCGGGAG+AGG | 0.461620 | 4.3:+32542461 | MS.gene003452:CDS |
| TCTGGTGGTAGAGGTGGAGG+TGG | 0.461700 | 4.3:+32543146 | MS.gene003452:CDS |
| CTCTCCGACTTGATTTAGCT+CGG | 0.462101 | 4.3:+32542455 | MS.gene003452:CDS |
| ATCTTCATCGGATTCTTCAT+CGG | 0.463604 | 4.3:-32541121 | None:intergenic |
| GTGGTAGAGGTGGAGGTGGA+AGG | 0.463792 | 4.3:+32543150 | MS.gene003452:CDS |
| CACTTTCACTTCTTCCTCAT+CGG | 0.467568 | 4.3:-32540132 | None:intergenic |
| CAACAACCTCTCCGCAACCT+TGG | 0.467608 | 4.3:-32542198 | None:intergenic |
| CTTCATGAAAGTGAACTTGA+TGG | 0.468232 | 4.3:+32543077 | MS.gene003452:CDS |
| GGAGGTGGAAGGAGTGGTGG+TGG | 0.477011 | 4.3:+32543161 | MS.gene003452:CDS |
| AGAGGTGGTCGAGGAGGAAG+AGG | 0.478640 | 4.3:+32543278 | MS.gene003452:CDS |
| AGAGGTTGCCGCCAAGCAAA+AGG | 0.479123 | 4.3:+32539806 | MS.gene003452:CDS |
| TAAGAAAGAGGTTAGTGAAT+CGG | 0.481358 | 4.3:+32541410 | MS.gene003452:CDS |
| TTCAGAGAAAATTTCTTCCA+AGG | 0.486230 | 4.3:+32542181 | MS.gene003452:intron |
| TTAACTCACTTCATCTTCAT+CGG | 0.487222 | 4.3:-32541133 | None:intergenic |
| GTACTTGTGGGGAACCTACA+AGG | 0.489480 | 4.3:+32542850 | MS.gene003452:CDS |
| AGAGGTGGAGGTGGAAGGAG+TGG | 0.489917 | 4.3:+32543155 | MS.gene003452:CDS |
| TGTTGATGTACGTCTTGCTT+CGG | 0.495897 | 4.3:+32542216 | MS.gene003452:CDS |
| AGAACTTGCAGCTTTCTTTG+TGG | 0.496340 | 4.3:-32541085 | None:intergenic |
| AGAACTATCATCTTTCTTTG+CGG | 0.496659 | 4.3:-32540868 | None:intergenic |
| ATGTACGTCTTGCTTCGGAT+GGG | 0.500671 | 4.3:+32542221 | MS.gene003452:CDS |
| AGTCAAGGTTCTGGTGGTAG+AGG | 0.500732 | 4.3:+32543137 | MS.gene003452:CDS |
| CGTCTTGCTTCGGATGGGGA+TGG | 0.500867 | 4.3:+32542226 | MS.gene003452:CDS |
| AAATAATGTCTTTGAGCCAC+TGG | 0.502495 | 4.3:-32542041 | None:intergenic |
| CGAGGAGGAAGAGGTGGTCG+TGG | 0.503442 | 4.3:+32543287 | MS.gene003452:CDS |
| GATGGAACAGCTTTAGCTGC+GGG | 0.503596 | 4.3:-32540352 | None:intergenic |
| TAATAGGCACTTGAGATGAA+TGG | 0.505941 | 4.3:+32542412 | MS.gene003452:intron |
| AGAAGTATCATCTTTCTTTG+CGG | 0.506839 | 4.3:-32540392 | None:intergenic |
| ACCTCTTTCTTAGAGGCCAC+AGG | 0.507804 | 4.3:-32541399 | None:intergenic |
| CTCTGAGGAATCTGAGGATG+AGG | 0.511350 | 4.3:+32539872 | MS.gene003452:CDS |
| GAAGCGGTGGATTTGGTGGT+AGG | 0.512935 | 4.3:+32543204 | MS.gene003452:CDS |
| GGTGGAGGTGGAAGGAGTGG+TGG | 0.513178 | 4.3:+32543158 | MS.gene003452:CDS |
| ACTTGATTTAGCTCGGGAGA+GGG | 0.513360 | 4.3:+32542462 | MS.gene003452:CDS |
| GGATTTGGTGGTAGGAGTGG+TGG | 0.516006 | 4.3:+32543212 | MS.gene003452:CDS |
| GGTGGTGGTCGATTTGGTGG+AGG | 0.516852 | 4.3:+32543176 | MS.gene003452:CDS |
| TTACCTTCAGAAGCAAAGCT+TGG | 0.517885 | 4.3:-32543323 | None:intergenic |
| TCAGCCCAAAGTGGTGGAAG+AGG | 0.519792 | 4.3:+32542622 | MS.gene003452:CDS |
| AGAAGATTCAGATGAAGATG+AGG | 0.520261 | 4.3:+32540682 | MS.gene003452:CDS |
| GGAAGAAGCGGTGGATTTGG+TGG | 0.521554 | 4.3:+32543200 | MS.gene003452:CDS |
| AAACCAAGCTTTGCTTCTGA+AGG | 0.523386 | 4.3:+32543320 | MS.gene003452:CDS |
| GTCAGAACGTTTCACGTCGA+AGG | 0.526938 | 4.3:-32542077 | None:intergenic |
| ACAGCAGCAGGCTTAGACAC+AGG | 0.527887 | 4.3:-32541300 | None:intergenic |
| GGCGTTGAAGGTAGTCAAGA+AGG | 0.528027 | 4.3:+32539827 | MS.gene003452:CDS |
| TCTCCGACTTGATTTAGCTC+GGG | 0.533160 | 4.3:+32542456 | MS.gene003452:CDS |
| ATCTTCTGACGAAGAAGATA+AGG | 0.533278 | 4.3:+32540908 | MS.gene003452:CDS |
| AGGGATAGTGGCGGTAGAGG+TGG | 0.538819 | 4.3:+32543263 | MS.gene003452:CDS |
| TAAGAATCTTGGAGAGGATG+AGG | 0.539483 | 4.3:+32542678 | MS.gene003452:CDS |
| GGTGGATTTGGTGGTAGGAG+TGG | 0.540537 | 4.3:+32543209 | MS.gene003452:CDS |
| CCAGAACCTTGACTATCTCT+AGG | 0.540562 | 4.3:-32543128 | None:intergenic |
| AGTGGCGGTAGAGGTGGTCG+AGG | 0.540676 | 4.3:+32543269 | MS.gene003452:CDS |
| GATGTACGTCTTGCTTCGGA+TGG | 0.542059 | 4.3:+32542220 | MS.gene003452:CDS |
| CAAGGTTCTGGTGGTAGAGG+TGG | 0.544275 | 4.3:+32543140 | MS.gene003452:CDS |
| CTTTGATATAGGCAAGAGGC+AGG | 0.545783 | 4.3:+32539737 | MS.gene003452:CDS |
| GCAGGCTGAGGAAGAAGTCA+AGG | 0.547712 | 4.3:+32539755 | MS.gene003452:CDS |
| AGAGTCAGATTCCTCTGAAG+TGG | 0.548311 | 4.3:-32540093 | None:intergenic |
| ACAGATCAAGGACGTGGAGA+TGG | 0.552435 | 4.3:+32541860 | MS.gene003452:intron |
| AGGAGGTCGATTTGGTGGAA+GGG | 0.553576 | 4.3:+32543244 | MS.gene003452:CDS |
| ACCTGTGGCCTCTAAGAAAG+AGG | 0.554114 | 4.3:+32541398 | MS.gene003452:CDS |
| TATGAATCTGGTTATTCCAA+GGG | 0.555285 | 4.3:+32542891 | MS.gene003452:CDS |
| CTCCTCACTCTCGTCAGAGT+CGG | 0.559018 | 4.3:-32541698 | None:intergenic |
| TTATGAATCTGGTTATTCCA+AGG | 0.559573 | 4.3:+32542890 | MS.gene003452:CDS |
| AGATTCCTCAGAGGATTCCT+CGG | 0.560086 | 4.3:-32539862 | None:intergenic |
| TTCTTCATCGGATTCTTCAT+CGG | 0.560281 | 4.3:-32541109 | None:intergenic |
| AGTGAGTGCAAAGAAGCAAA+AGG | 0.568954 | 4.3:+32539779 | MS.gene003452:CDS |
| GTCTCAAACAGTATTTGTCA+GGG | 0.570865 | 4.3:+32542648 | MS.gene003452:CDS |
| TGTACGTCTTGCTTCGGATG+GGG | 0.571328 | 4.3:+32542222 | MS.gene003452:CDS |
| CGAGAGTGAGGAGGAGAGTG+AGG | 0.574779 | 4.3:+32541708 | MS.gene003452:CDS |
| TGGTTGATGCTGGCAAATCT+GGG | 0.576768 | 4.3:+32541880 | MS.gene003452:CDS |
| CTTGATTTAGCTCGGGAGAG+GGG | 0.578698 | 4.3:+32542463 | MS.gene003452:CDS |
| GGTGGAGGTGGAAGAAGCGG+TGG | 0.580780 | 4.3:+32543191 | MS.gene003452:CDS |
| TATAGGCAAGAGGCAGGCTG+AGG | 0.588543 | 4.3:+32539743 | MS.gene003452:CDS |
| AACTACTCAGCCCAAAGTGG+TGG | 0.591190 | 4.3:+32542616 | MS.gene003452:CDS |
| GGCGGTAGAGGTGGTCGAGG+AGG | 0.593185 | 4.3:+32543272 | MS.gene003452:CDS |
| TGACAAATACTGTTTGAGAC+TGG | 0.594261 | 4.3:-32542645 | None:intergenic |
| GGAATCCTCTGAGGAATCTG+AGG | 0.596711 | 4.3:+32539866 | MS.gene003452:CDS |
| TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 4.3:+32542270 | MS.gene003452:CDS |
| GGTCTCATTTGGTGTAGCTG+GGG | 0.600709 | 4.3:-32542020 | None:intergenic |
| AAAGAAGCAAAAGGTAGAAG+AGG | 0.600905 | 4.3:+32539788 | MS.gene003452:CDS |
| TTCCGACTCTGACGAGAGTG+AGG | 0.613333 | 4.3:+32541696 | MS.gene003452:CDS |
| TTTGGTGGAGGTGGAAGAAG+CGG | 0.617758 | 4.3:+32543188 | MS.gene003452:CDS |
| GACGTGGAGATGGTTGATGC+TGG | 0.618173 | 4.3:+32541870 | MS.gene003452:CDS |
| GTTGAAACAGATCAAGGACG+TGG | 0.624210 | 4.3:+32541854 | MS.gene003452:intron |
| GAAGGAGGAAAGTAGTTCCG+AGG | 0.625559 | 4.3:+32539845 | MS.gene003452:CDS |
| CCAGCCAGAGACCACTTCAG+AGG | 0.625597 | 4.3:+32540082 | MS.gene003452:CDS |
| AGAGATAGTCAAGGTTCTGG+TGG | 0.625604 | 4.3:+32543131 | MS.gene003452:CDS |
| GGTGGTCGAGGAGGAAGAGG+TGG | 0.627115 | 4.3:+32543281 | MS.gene003452:CDS |
| GAGTGATTCGTCTGATGACG+AGG | 0.627287 | 4.3:+32541434 | MS.gene003452:CDS |
| TGAATCTTCTGATGAAGACA+AGG | 0.628462 | 4.3:+32540438 | MS.gene003452:CDS |
| AAAACTGCCACCCTAGTCGT+CGG | 0.640972 | 4.3:-32543566 | None:intergenic |
| GGAGGAAGAGGTGGTCGTGG+AGG | 0.644972 | 4.3:+32543290 | MS.gene003452:CDS |
| TTGACTTTGATATAGGCAAG+AGG | 0.646540 | 4.3:+32539733 | MS.gene003452:CDS |
| CGACTCTGACGAGAGTGAGG+AGG | 0.647070 | 4.3:+32541699 | MS.gene003452:CDS |
| TCTCAAACAGTATTTGTCAG+GGG | 0.650987 | 4.3:+32542649 | MS.gene003452:CDS |
| ATGAATCTGGTTATTCCAAG+GGG | 0.651208 | 4.3:+32542892 | MS.gene003452:CDS |
| TGATGGTTATCAGTTGTCAG+TGG | 0.655450 | 4.3:+32543094 | MS.gene003452:CDS |
| TACTTGTGGGGAACCTACAA+GGG | 0.657423 | 4.3:+32542851 | MS.gene003452:CDS |
| TGACAGCTCCTCTTCCGATG+AGG | 0.667005 | 4.3:+32540118 | MS.gene003452:CDS |
| AGATGGAACAGCTTTAGCTG+CGG | 0.669599 | 4.3:-32540353 | None:intergenic |
| GCCAAACCTAGAGATAGTCA+AGG | 0.670318 | 4.3:+32543122 | MS.gene003452:CDS |
| TCTCCCGAGCTAAATCAAGT+CGG | 0.679997 | 4.3:-32542459 | None:intergenic |
| GTTGAAGGTAGTCAAGAAGG+AGG | 0.683060 | 4.3:+32539830 | MS.gene003452:CDS |
| CTCATCCTCAGATTCCTCAG+AGG | 0.686828 | 4.3:-32539871 | None:intergenic |
| TGATGAAGATAAGAAACCTG+TGG | 0.691109 | 4.3:+32541383 | MS.gene003452:CDS |
| GGATAAGATGAATATTGACA+AGG | 0.692392 | 4.3:+32541669 | MS.gene003452:intron |
| TTTCTTCCAAGGTTGCGGAG+AGG | 0.694587 | 4.3:+32542192 | MS.gene003452:CDS |
| AGTAACTACTCAGCCCAAAG+TGG | 0.695978 | 4.3:+32542613 | MS.gene003452:intron |
| TTTGGTGGAAGGGATAGTGG+CGG | 0.720960 | 4.3:+32543254 | MS.gene003452:CDS |
| TAGTTCCGAGGAATCCTCTG+AGG | 0.721411 | 4.3:+32539857 | MS.gene003452:CDS |
| GCTACACCAAATGAGACCAG+TGG | 0.725457 | 4.3:+32542025 | MS.gene003452:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAATGATATAAAATTA+AGG | - | chr4.3:32540746-32540765 | None:intergenic | 10.0% |
| !! | AGGAAAAAATATATATTTAA+TGG | - | chr4.3:32541020-32541039 | None:intergenic | 10.0% |
| !! | ATACAATGATATAAAATTAA+GGG | - | chr4.3:32540745-32540764 | None:intergenic | 10.0% |
| !! | GGAAAAAATATATATTTAAT+GGG | - | chr4.3:32541019-32541038 | None:intergenic | 10.0% |
| !! | GTATCAAAAAATATATTAAT+TGG | - | chr4.3:32543363-32543382 | None:intergenic | 10.0% |
| !! | TTTATATTTCATTTCAATAT+AGG | - | chr4.3:32541538-32541557 | None:intergenic | 10.0% |
| !!! | TTAAATATATATTTTTTCCT+TGG | + | chr4.3:32541020-32541039 | MS.gene003452:intron | 10.0% |
| !!! | TTTTGATTTTAATTTTAGTT+TGG | + | chr4.3:32541791-32541810 | MS.gene003452:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTAC+TGG | + | chr4.3:32541944-32541963 | MS.gene003452:intron | 10.0% |
| !! | AAAAAAAAGTGAATTATAGA+GGG | - | chr4.3:32540320-32540339 | None:intergenic | 15.0% |
| !! | AGTAATTACCTATTATTATT+AGG | - | chr4.3:32542499-32542518 | None:intergenic | 15.0% |
| !! | ATTGAAATGAAATATAAACA+TGG | + | chr4.3:32541540-32541559 | MS.gene003452:intron | 15.0% |
| !! | TAAAAAAAAGTGAATTATAG+AGG | - | chr4.3:32540321-32540340 | None:intergenic | 15.0% |
| !!! | ATGTTTAAGATATTAATCAA+AGG | - | chr4.3:32540205-32540224 | None:intergenic | 15.0% |
| !!! | TGTATTTACAATTTTTTGTT+TGG | + | chr4.3:32540760-32540779 | MS.gene003452:intron | 15.0% |
| !! | AAAATACATAACAGAATAAG+AGG | - | chr4.3:32542796-32542815 | None:intergenic | 20.0% |
| !! | AGATGTGACATTTAAATATA+TGG | - | chr4.3:32541187-32541206 | None:intergenic | 20.0% |
| !! | ATATCATGCTATAAACTAAA+GGG | - | chr4.3:32540501-32540520 | None:intergenic | 20.0% |
| !! | ATGAAATATAAACATGGTAA+TGG | + | chr4.3:32541546-32541565 | MS.gene003452:intron | 20.0% |
| !! | CATTTACTCCTAATAATAAT+AGG | + | chr4.3:32542488-32542507 | MS.gene003452:CDS | 20.0% |
| !! | TATATCATGCTATAAACTAA+AGG | - | chr4.3:32540502-32540521 | None:intergenic | 20.0% |
| !! | TGATAAACAAAACAAAAAGT+TGG | - | chr4.3:32540555-32540574 | None:intergenic | 20.0% |
| !! | TTGTTTGCATGTTTAATAAT+AGG | + | chr4.3:32542396-32542415 | MS.gene003452:intron | 20.0% |
| !!! | AATATTTTTTACTTCAGTTC+TGG | + | chr4.3:32543485-32543504 | MS.gene003452:intron | 20.0% |
| !!! | GTTTTAAAGAAAAGAACAAT+AGG | - | chr4.3:32540296-32540315 | None:intergenic | 20.0% |
| !!! | TATTGTGTTATTGATACAAT+GGG | + | chr4.3:32541629-32541648 | MS.gene003452:intron | 20.0% |
| !!! | TTATTGTGTTATTGATACAA+TGG | + | chr4.3:32541628-32541647 | MS.gene003452:intron | 20.0% |
| !!! | TTGTTCTAGCTATAAATTAA+AGG | - | chr4.3:32540525-32540544 | None:intergenic | 20.0% |
| ! | AAATCATACAACCATATGAA+AGG | - | chr4.3:32541160-32541179 | None:intergenic | 25.0% |
| ! | AACCAGATTCATAATCTTTA+GGG | - | chr4.3:32542884-32542903 | None:intergenic | 25.0% |
| ! | AAGCAGAAATAATAAACATG+AGG | - | chr4.3:32542749-32542768 | None:intergenic | 25.0% |
| ! | ACATTGTTAGAATGAATACA+TGG | + | chr4.3:32543453-32543472 | MS.gene003452:intron | 25.0% |
| ! | AGCAGAAATAATAAACATGA+GGG | - | chr4.3:32542748-32542767 | None:intergenic | 25.0% |
| ! | ATAAAACACATGAGTTATAG+AGG | - | chr4.3:32540584-32540603 | None:intergenic | 25.0% |
| ! | GAAGTAAAAAATATTGCAAG+CGG | - | chr4.3:32543480-32543499 | None:intergenic | 25.0% |
| ! | GTATTCATTCTAACAATGTA+TGG | - | chr4.3:32543452-32543471 | None:intergenic | 25.0% |
| ! | TAAAACACATGAGTTATAGA+GGG | - | chr4.3:32540583-32540602 | None:intergenic | 25.0% |
| ! | TAAATATACTTGTAGTAGCA+TGG | + | chr4.3:32541576-32541595 | MS.gene003452:intron | 25.0% |
| ! | TAACCAGATTCATAATCTTT+AGG | - | chr4.3:32542885-32542904 | None:intergenic | 25.0% |
| ! | TACTGCAATAACACAATAAA+TGG | - | chr4.3:32542597-32542616 | None:intergenic | 25.0% |
| ! | TTATATCATAAACACTGTGT+TGG | + | chr4.3:32540267-32540286 | MS.gene003452:intron | 25.0% |
| !! | ATGCTTTAATGCATTTTGAA+TGG | + | chr4.3:32539913-32539932 | MS.gene003452:intron | 25.0% |
| !! | GATACAGCTTTTCAATTAAA+AGG | + | chr4.3:32543378-32543397 | MS.gene003452:intron | 25.0% |
| !! | TATGTCATGTTAATTTTACG+TGG | + | chr4.3:32539985-32540004 | MS.gene003452:intron | 25.0% |
| !! | TCTATAACTCATGTGTTTTA+TGG | + | chr4.3:32540583-32540602 | MS.gene003452:intron | 25.0% |
| !!! | ACATTTTGAAGTTTATTGCA+TGG | + | chr4.3:32540467-32540486 | MS.gene003452:intron | 25.0% |
| AAAGCTGTTCCATCTAAAAA+TGG | + | chr4.3:32540361-32540380 | MS.gene003452:CDS | 30.0% | |
| AAATGGAATCAAAACATGTG+AGG | - | chr4.3:32542580-32542599 | None:intergenic | 30.0% | |
| AAGCTGTTCCATCTAAAAAT+GGG | + | chr4.3:32540362-32540381 | MS.gene003452:CDS | 30.0% | |
| ACTGGAGATAATTTAAGTCA+AGG | + | chr4.3:32541962-32541981 | MS.gene003452:intron | 30.0% | |
| AGAACTATCATCTTTCTTTG+CGG | - | chr4.3:32540871-32540890 | None:intergenic | 30.0% | |
| AGTGAGTTAAACCTTTCATA+TGG | + | chr4.3:32541146-32541165 | MS.gene003452:intron | 30.0% | |
| ATCCCTAAAGATTATGAATC+TGG | + | chr4.3:32542879-32542898 | MS.gene003452:CDS | 30.0% | |
| ATGCTAATAGCTTACACTTT+GGG | - | chr4.3:32542299-32542318 | None:intergenic | 30.0% | |
| ATTCATGTTGAAACAGATCA+AGG | + | chr4.3:32541848-32541867 | MS.gene003452:intron | 30.0% | |
| ATTGAAAACACCTCAGAAAA+AGG | + | chr4.3:32541738-32541757 | MS.gene003452:CDS | 30.0% | |
| GATCTGTTTCAACATGAATA+TGG | - | chr4.3:32541847-32541866 | None:intergenic | 30.0% | |
| GCTCAAAGACATTATTTGTT+GGG | + | chr4.3:32542047-32542066 | MS.gene003452:CDS | 30.0% | |
| GGATAAGATGAATATTGACA+AGG | + | chr4.3:32541669-32541688 | MS.gene003452:intron | 30.0% | |
| TAAGAAAGAGGTTAGTGAAT+CGG | + | chr4.3:32541410-32541429 | MS.gene003452:CDS | 30.0% | |
| TATGAATCTGGTTATTCCAA+GGG | + | chr4.3:32542891-32542910 | MS.gene003452:CDS | 30.0% | |
| TATGCTACCTTTCTACTAAA+GGG | + | chr4.3:32541206-32541225 | MS.gene003452:intron | 30.0% | |
| TCAGATAAGAGCTAAATTGA+TGG | + | chr4.3:32542815-32542834 | MS.gene003452:intron | 30.0% | |
| TGCCTATATCAAAGTCAAAA+TGG | - | chr4.3:32539731-32539750 | None:intergenic | 30.0% | |
| TTAACTCACTTCATCTTCAT+CGG | - | chr4.3:32541136-32541155 | None:intergenic | 30.0% | |
| TTACTTCATGTATTGTTCAC+AGG | + | chr4.3:32543003-32543022 | MS.gene003452:intron | 30.0% | |
| TTATGAATCTGGTTATTCCA+AGG | + | chr4.3:32542890-32542909 | MS.gene003452:CDS | 30.0% | |
| TTCAGAGAAAATTTCTTCCA+AGG | + | chr4.3:32542181-32542200 | MS.gene003452:intron | 30.0% | |
| ! | AAAGCTGTTCCTTCTAAAAA+TGG | + | chr4.3:32540623-32540642 | MS.gene003452:CDS | 30.0% |
| ! | AAAGTTTTCAATGCAGCATT+AGG | - | chr4.3:32542948-32542967 | None:intergenic | 30.0% |
| ! | AAGCTGTTCCTTCTAAAAAT+GGG | + | chr4.3:32540624-32540643 | MS.gene003452:CDS | 30.0% |
| ! | TTTCTCACTCATGTGATTTT+TGG | + | chr4.3:32542111-32542130 | MS.gene003452:intron | 30.0% |
| ! | TTTTGATAAGAATCTTGGAG+AGG | + | chr4.3:32542672-32542691 | MS.gene003452:CDS | 30.0% |
| !! | AAAGCTGTTTCTTCCAAAAA+TGG | + | chr4.3:32540837-32540856 | MS.gene003452:CDS | 30.0% |
| !! | AAGCTGTTTCTTCCAAAAAT+GGG | + | chr4.3:32540838-32540857 | MS.gene003452:CDS | 30.0% |
| !! | AGAAGTATCATCTTTCTTTG+CGG | - | chr4.3:32540395-32540414 | None:intergenic | 30.0% |
| !! | TTAAGGGTATTATCATCATG+CGG | - | chr4.3:32540729-32540748 | None:intergenic | 30.0% |
| !!! | ATGCTACTACATTTTTTGTG+AGG | - | chr4.3:32541512-32541531 | None:intergenic | 30.0% |
| !!! | GACCATTTTGACTTTGATAT+AGG | + | chr4.3:32539726-32539745 | MS.gene003452:CDS | 30.0% |
| !!! | TGAACTTTTTGCCATTTTCA+GGG | + | chr4.3:32543527-32543546 | MS.gene003452:intron | 30.0% |
| !!! | TTGAACTTTTTGCCATTTTC+AGG | + | chr4.3:32543526-32543545 | MS.gene003452:intron | 30.0% |
| !!! | TTTTTCTGAGGTGTTTTCAA+TGG | - | chr4.3:32541739-32541758 | None:intergenic | 30.0% |
| AAAGAAGCAAAAGGTAGAAG+AGG | + | chr4.3:32539788-32539807 | MS.gene003452:CDS | 35.0% | |
| AAATAATGTCTTTGAGCCAC+TGG | - | chr4.3:32542044-32542063 | None:intergenic | 35.0% | |
| AGAAGATTCAGATGAAGATG+AGG | + | chr4.3:32540682-32540701 | MS.gene003452:CDS | 35.0% | |
| AGTCTCAAACAGTATTTGTC+AGG | + | chr4.3:32542647-32542666 | MS.gene003452:CDS | 35.0% | |
| ATCTTCATCGGATTCTTCAT+CGG | - | chr4.3:32541124-32541143 | None:intergenic | 35.0% | |
| ATCTTCTGACGAAGAAGATA+AGG | + | chr4.3:32540908-32540927 | MS.gene003452:CDS | 35.0% | |
| ATGAATCTGGTTATTCCAAG+GGG | + | chr4.3:32542892-32542911 | MS.gene003452:CDS | 35.0% | |
| CTATGCTACCTTTCTACTAA+AGG | + | chr4.3:32541205-32541224 | MS.gene003452:intron | 35.0% | |
| CTTCATGAAAGTGAACTTGA+TGG | + | chr4.3:32543077-32543096 | MS.gene003452:CDS | 35.0% | |
| CTTCTAACCCTTTAGTAGAA+AGG | - | chr4.3:32541216-32541235 | None:intergenic | 35.0% | |
| GAAAATTTCTTCCAAGGTTG+CGG | + | chr4.3:32542187-32542206 | MS.gene003452:CDS | 35.0% | |
| GAAGAATCATCTTTCTTTGC+AGG | - | chr4.3:32540656-32540675 | None:intergenic | 35.0% | |
| GAATCAAAACATGTGAGGTA+TGG | - | chr4.3:32542553-32542572 | None:intergenic | 35.0% | |
| GATGCTAATAGCTTACACTT+TGG | - | chr4.3:32542300-32542319 | None:intergenic | 35.0% | |
| GATTCCAGAAACAAATCAGT+TGG | - | chr4.3:32542353-32542372 | None:intergenic | 35.0% | |
| GGCTCAAAGACATTATTTGT+TGG | + | chr4.3:32542046-32542065 | MS.gene003452:CDS | 35.0% | |
| GTATGGAATCAAAACATGTG+AGG | - | chr4.3:32542558-32542577 | None:intergenic | 35.0% | |
| GTCTCAAACAGTATTTGTCA+GGG | + | chr4.3:32542648-32542667 | MS.gene003452:CDS | 35.0% | |
| TAATAGGCACTTGAGATGAA+TGG | + | chr4.3:32542412-32542431 | MS.gene003452:intron | 35.0% | |
| TCTCAAACAGTATTTGTCAG+GGG | + | chr4.3:32542649-32542668 | MS.gene003452:CDS | 35.0% | |
| TGAATCTTCTGATGAAGACA+AGG | + | chr4.3:32540438-32540457 | MS.gene003452:CDS | 35.0% | |
| TGACGAAGAAGATAAGGTAT+TGG | + | chr4.3:32540914-32540933 | MS.gene003452:intron | 35.0% | |
| TGATGAAGATAAGAAACCTG+TGG | + | chr4.3:32541383-32541402 | MS.gene003452:CDS | 35.0% | |
| TTCACTAACCTCTTTCTTAG+AGG | - | chr4.3:32541409-32541428 | None:intergenic | 35.0% | |
| TTCAGATGAAGATGAGGTAT+TGG | + | chr4.3:32540688-32540707 | MS.gene003452:intron | 35.0% | |
| TTCTTCATCGGATTCTTCAT+CGG | - | chr4.3:32541112-32541131 | None:intergenic | 35.0% | |
| TTGACTTTGATATAGGCAAG+AGG | + | chr4.3:32539733-32539752 | MS.gene003452:CDS | 35.0% | |
| ! | CATAACAGAATAAGAGGTGT+TGG | - | chr4.3:32542790-32542809 | None:intergenic | 35.0% |
| ! | GAAGTATCATCTTTCTTTGC+GGG | - | chr4.3:32540394-32540413 | None:intergenic | 35.0% |
| ! | GATGGAGTATTTAAAGGCTT+TGG | + | chr4.3:32542244-32542263 | MS.gene003452:CDS | 35.0% |
| ! | GTAGTCTTTTTCCCTGAAAA+TGG | - | chr4.3:32543541-32543560 | None:intergenic | 35.0% |
| ! | TATATGCTGACCTTTTTCTG+AGG | - | chr4.3:32541751-32541770 | None:intergenic | 35.0% |
| ! | TGACAAATACTGTTTGAGAC+TGG | - | chr4.3:32542648-32542667 | None:intergenic | 35.0% |
| !! | AAATTGATGGAGCATTTTGG+TGG | + | chr4.3:32542828-32542847 | MS.gene003452:CDS | 35.0% |
| !! | ACTCACATTTTTAGAGGCTT+TGG | - | chr4.3:32541061-32541080 | None:intergenic | 35.0% |
| !! | ACTTCCAACTGATTTGTTTC+TGG | + | chr4.3:32542346-32542365 | MS.gene003452:intron | 35.0% |
| !! | AGGGGTTTTGATAAGAATCT+TGG | + | chr4.3:32542667-32542686 | MS.gene003452:CDS | 35.0% |
| !! | GCTAAATTGATGGAGCATTT+TGG | + | chr4.3:32542825-32542844 | MS.gene003452:CDS | 35.0% |
| !!! | TCACATTCCCATTTTTAGCT+GGG | - | chr4.3:32540055-32540074 | None:intergenic | 35.0% |
| !!! | TTCACATTCCCATTTTTAGC+TGG | - | chr4.3:32540056-32540075 | None:intergenic | 35.0% |
| AAACCAAGCTTTGCTTCTGA+AGG | + | chr4.3:32543320-32543339 | MS.gene003452:CDS | 40.0% | |
| AAGAAGACCCCAGCTAAAAA+TGG | + | chr4.3:32540044-32540063 | MS.gene003452:CDS | 40.0% | |
| AATCATTCTGCATGAGCCAA+AGG | - | chr4.3:32542720-32542739 | None:intergenic | 40.0% | |
| ACCTTGACTATCTCTAGGTT+TGG | - | chr4.3:32543126-32543145 | None:intergenic | 40.0% | |
| AGAACTTGCAGCTTTCTTTG+TGG | - | chr4.3:32541088-32541107 | None:intergenic | 40.0% | |
| AGAAGACCCCAGCTAAAAAT+GGG | + | chr4.3:32540045-32540064 | MS.gene003452:CDS | 40.0% | |
| AGTGAGTGCAAAGAAGCAAA+AGG | + | chr4.3:32539779-32539798 | MS.gene003452:CDS | 40.0% | |
| ATCATTCTGCATGAGCCAAA+GGG | - | chr4.3:32542719-32542738 | None:intergenic | 40.0% | |
| CACTTTCACTTCTTCCTCAT+CGG | - | chr4.3:32540135-32540154 | None:intergenic | 40.0% | |
| CTACAATTGTAGTAGCACGT+AGG | + | chr4.3:32541485-32541504 | MS.gene003452:intron | 40.0% | |
| GAACTTGCAGCTTTCTTTGT+GGG | - | chr4.3:32541087-32541106 | None:intergenic | 40.0% | |
| TAACTTATGCCCCACTGTAT+AGG | + | chr4.3:32541269-32541288 | MS.gene003452:intron | 40.0% | |
| TAAGAATCTTGGAGAGGATG+AGG | + | chr4.3:32542678-32542697 | MS.gene003452:CDS | 40.0% | |
| TGATGGTTATCAGTTGTCAG+TGG | + | chr4.3:32543094-32543113 | MS.gene003452:CDS | 40.0% | |
| TGTTCACAGGTTTGCATACA+TGG | + | chr4.3:32543016-32543035 | MS.gene003452:intron | 40.0% | |
| TGTTGATGTACGTCTTGCTT+CGG | + | chr4.3:32542216-32542235 | MS.gene003452:CDS | 40.0% | |
| TTACCTTCAGAAGCAAAGCT+TGG | - | chr4.3:32543326-32543345 | None:intergenic | 40.0% | |
| TTGCAAAGAAACATACCCCT+TGG | - | chr4.3:32542910-32542929 | None:intergenic | 40.0% | |
| ! | AACTGTGAACAGTCTGAAGT+AGG | - | chr4.3:32542972-32542991 | None:intergenic | 40.0% |
| ! | GATGGGGATGGAGTATTTAA+AGG | + | chr4.3:32542238-32542257 | MS.gene003452:CDS | 40.0% |
| !! | AGCATTTTGGTGGTACTTGT+GGG | + | chr4.3:32542838-32542857 | MS.gene003452:CDS | 40.0% |
| !! | TGATTTTATTTCCCCCCCTT+TGG | + | chr4.3:32542701-32542720 | MS.gene003452:intron | 40.0% |
| !!! | CACATTCCCATTTTTAGCTG+GGG | - | chr4.3:32540054-32540073 | None:intergenic | 40.0% |
| AGATTCCTCAGAGGATTCCT+CGG | - | chr4.3:32539865-32539884 | None:intergenic | 45.0% | |
| AGGCTTTGCATCCTATACAG+TGG | - | chr4.3:32541283-32541302 | None:intergenic | 45.0% | |
| AGTAACTACTCAGCCCAAAG+TGG | + | chr4.3:32542613-32542632 | MS.gene003452:intron | 45.0% | |
| ATGTACGTCTTGCTTCGGAT+GGG | + | chr4.3:32542221-32542240 | MS.gene003452:CDS | 45.0% | |
| CCAGAACCTTGACTATCTCT+AGG | - | chr4.3:32543131-32543150 | None:intergenic | 45.0% | |
| CCTAGAGATAGTCAAGGTTC+TGG | + | chr4.3:32543128-32543147 | MS.gene003452:CDS | 45.0% | |
| CTTTGATATAGGCAAGAGGC+AGG | + | chr4.3:32539737-32539756 | MS.gene003452:CDS | 45.0% | |
| GCCAAACCTAGAGATAGTCA+AGG | + | chr4.3:32543122-32543141 | MS.gene003452:CDS | 45.0% | |
| GCTTTGCATCCTATACAGTG+GGG | - | chr4.3:32541281-32541300 | None:intergenic | 45.0% | |
| GGCTTTGCATCCTATACAGT+GGG | - | chr4.3:32541282-32541301 | None:intergenic | 45.0% | |
| GTTGAAACAGATCAAGGACG+TGG | + | chr4.3:32541854-32541873 | MS.gene003452:intron | 45.0% | |
| GTTGAAGGTAGTCAAGAAGG+AGG | + | chr4.3:32539830-32539849 | MS.gene003452:CDS | 45.0% | |
| TACTTGTGGGGAACCTACAA+GGG | + | chr4.3:32542851-32542870 | MS.gene003452:CDS | 45.0% | |
| TCATTCTGCATGAGCCAAAG+GGG | - | chr4.3:32542718-32542737 | None:intergenic | 45.0% | |
| TCTCCCGAGCTAAATCAAGT+CGG | - | chr4.3:32542462-32542481 | None:intergenic | 45.0% | |
| TGGGAATATGCGTCAATGAC+AGG | + | chr4.3:32541648-32541667 | MS.gene003452:intron | 45.0% | |
| TGTTGAGTTTGCAACTGCAG+AGG | + | chr4.3:32542270-32542289 | MS.gene003452:CDS | 45.0% | |
| TTAGCTGGGGTCTTCTTTGA+AGG | - | chr4.3:32540041-32540060 | None:intergenic | 45.0% | |
| TTAGGGATTGACACCCTTGT+AGG | - | chr4.3:32542867-32542886 | None:intergenic | 45.0% | |
| ! | ACTTGATTTAGCTCGGGAGA+GGG | + | chr4.3:32542462-32542481 | MS.gene003452:CDS | 45.0% |
| ! | AGAGATAGTCAAGGTTCTGG+TGG | + | chr4.3:32543131-32543150 | MS.gene003452:CDS | 45.0% |
| ! | AGAGTCAGATTCCTCTGAAG+TGG | - | chr4.3:32540096-32540115 | None:intergenic | 45.0% |
| ! | AGATGGAACAGCTTTAGCTG+CGG | - | chr4.3:32540356-32540375 | None:intergenic | 45.0% |
| ! | ATGGTTGATGCTGGCAAATC+TGG | + | chr4.3:32541879-32541898 | MS.gene003452:CDS | 45.0% |
| ! | CTCTCCGACTTGATTTAGCT+CGG | + | chr4.3:32542455-32542474 | MS.gene003452:CDS | 45.0% |
| ! | GAAGAAACAGCTTTTGCTGC+AGG | - | chr4.3:32540831-32540850 | None:intergenic | 45.0% |
| ! | TACCTTCAACGCCTTTTGCT+TGG | - | chr4.3:32539820-32539839 | None:intergenic | 45.0% |
| ! | TCTCCGACTTGATTTAGCTC+GGG | + | chr4.3:32542456-32542475 | MS.gene003452:CDS | 45.0% |
| ! | TGCGGATACACTCCCATTTT+TGG | - | chr4.3:32540853-32540872 | None:intergenic | 45.0% |
| ! | TGGTTGATGCTGGCAAATCT+GGG | + | chr4.3:32541880-32541899 | MS.gene003452:CDS | 45.0% |
| ! | TTTGAGCCACTGGTCTCATT+TGG | - | chr4.3:32542034-32542053 | None:intergenic | 45.0% |
| ! | TTTGGTGTAGCTGGGGTATT+AGG | - | chr4.3:32542016-32542035 | None:intergenic | 45.0% |
| !! | GAGCATTTTGGTGGTACTTG+TGG | + | chr4.3:32542837-32542856 | MS.gene003452:CDS | 45.0% |
| !! | GCATTTTGGTGGTACTTGTG+GGG | + | chr4.3:32542839-32542858 | MS.gene003452:CDS | 45.0% |
| !! | GGGTGCACTCACATTTTTAG+AGG | - | chr4.3:32541067-32541086 | None:intergenic | 45.0% |
| !! | GGTGCACTCCCATTTTTAGA+AGG | - | chr4.3:32540373-32540392 | None:intergenic | 45.0% |
| !! | GGTGCACTCCCATTTTTAGA+TGG | - | chr4.3:32540373-32540392 | None:intergenic | 45.0% |
| !! | TGGTCTCATTTGGTGTAGCT+GGG | - | chr4.3:32542024-32542043 | None:intergenic | 45.0% |
| !! | TTTTTAGAGGCTTTGGCTGC+AGG | - | chr4.3:32541054-32541073 | None:intergenic | 45.0% |
| !!! | CTCTTTTTTGCAACAGCAGC+AGG | - | chr4.3:32541315-32541334 | None:intergenic | 45.0% |
| !! | ATGAAAAAAAAAATTAAAAA+AGG | - | chr4.3:32540798-32540817 | None:intergenic | 5.0% |
| !!! | TTTTTTAATTTTTTTTTTCA+TGG | + | chr4.3:32540797-32540816 | MS.gene003452:intron | 5.0% |
| AACGTTTCACGTCGAAGGAC+AGG | - | chr4.3:32542075-32542094 | None:intergenic | 50.0% | |
| AACTACTCAGCCCAAAGTGG+TGG | + | chr4.3:32542616-32542635 | MS.gene003452:CDS | 50.0% | |
| ACAGATCAAGGACGTGGAGA+TGG | + | chr4.3:32541860-32541879 | MS.gene003452:intron | 50.0% | |
| ACCTCTTTCTTAGAGGCCAC+AGG | - | chr4.3:32541402-32541421 | None:intergenic | 50.0% | |
| ATTCTGCATGAGCCAAAGGG+GGG | - | chr4.3:32542716-32542735 | None:intergenic | 50.0% | |
| CACTTCTTCCTCATCGGAAG+AGG | - | chr4.3:32540129-32540148 | None:intergenic | 50.0% | |
| CATTCTGCATGAGCCAAAGG+GGG | - | chr4.3:32542717-32542736 | None:intergenic | 50.0% | |
| CTCATCCTCAGATTCCTCAG+AGG | - | chr4.3:32539874-32539893 | None:intergenic | 50.0% | |
| GAAGGAGGAAAGTAGTTCCG+AGG | + | chr4.3:32539845-32539864 | MS.gene003452:CDS | 50.0% | |
| GAGCACGATGCAACAGTTCT+TGG | - | chr4.3:32542438-32542457 | None:intergenic | 50.0% | |
| GATGTACGTCTTGCTTCGGA+TGG | + | chr4.3:32542220-32542239 | MS.gene003452:CDS | 50.0% | |
| GCTACACCAAATGAGACCAG+TGG | + | chr4.3:32542025-32542044 | MS.gene003452:CDS | 50.0% | |
| GTACTTGTGGGGAACCTACA+AGG | + | chr4.3:32542850-32542869 | MS.gene003452:CDS | 50.0% | |
| GTCAGAACGTTTCACGTCGA+AGG | - | chr4.3:32542080-32542099 | None:intergenic | 50.0% | |
| TAGTTCCGAGGAATCCTCTG+AGG | + | chr4.3:32539857-32539876 | MS.gene003452:CDS | 50.0% | |
| TGCAGCATTAGGAGAAGCAG+TGG | - | chr4.3:32542937-32542956 | None:intergenic | 50.0% | |
| TGTACGTCTTGCTTCGGATG+GGG | + | chr4.3:32542222-32542241 | MS.gene003452:CDS | 50.0% | |
| TTTCTTCCAAGGTTGCGGAG+AGG | + | chr4.3:32542192-32542211 | MS.gene003452:CDS | 50.0% | |
| TTTGGTGGAGGTGGAAGAAG+CGG | + | chr4.3:32543188-32543207 | MS.gene003452:CDS | 50.0% | |
| ! | ACCTGTGGCCTCTAAGAAAG+AGG | + | chr4.3:32541398-32541417 | MS.gene003452:CDS | 50.0% |
| ! | AGTCAAGGTTCTGGTGGTAG+AGG | + | chr4.3:32543137-32543156 | MS.gene003452:CDS | 50.0% |
| ! | CTCTGAGGAATCTGAGGATG+AGG | + | chr4.3:32539872-32539891 | MS.gene003452:CDS | 50.0% |
| ! | CTTCAACGCCTTTTGCTTGG+CGG | - | chr4.3:32539817-32539836 | None:intergenic | 50.0% |
| ! | CTTGATTTAGCTCGGGAGAG+GGG | + | chr4.3:32542463-32542482 | MS.gene003452:CDS | 50.0% |
| ! | GAAGGAACAGCTTTAGCTGC+AGG | - | chr4.3:32540617-32540636 | None:intergenic | 50.0% |
| ! | GACTTGATTTAGCTCGGGAG+AGG | + | chr4.3:32542461-32542480 | MS.gene003452:CDS | 50.0% |
| ! | GAGTGATTCGTCTGATGACG+AGG | + | chr4.3:32541434-32541453 | MS.gene003452:CDS | 50.0% |
| ! | GATGGAACAGCTTTAGCTGC+GGG | - | chr4.3:32540355-32540374 | None:intergenic | 50.0% |
| ! | GGAATCCTCTGAGGAATCTG+AGG | + | chr4.3:32539866-32539885 | MS.gene003452:CDS | 50.0% |
| ! | GGCGTTGAAGGTAGTCAAGA+AGG | + | chr4.3:32539827-32539846 | MS.gene003452:CDS | 50.0% |
| ! | TTTGGTGGAAGGGATAGTGG+CGG | + | chr4.3:32543254-32543273 | MS.gene003452:CDS | 50.0% |
| !! | AGGAGGTCGATTTGGTGGAA+GGG | + | chr4.3:32543244-32543263 | MS.gene003452:CDS | 50.0% |
| !! | CGATTTGGTGGAAGGGATAG+TGG | + | chr4.3:32543251-32543270 | MS.gene003452:CDS | 50.0% |
| !! | CTGGTCTCATTTGGTGTAGC+TGG | - | chr4.3:32542025-32542044 | None:intergenic | 50.0% |
| !! | GATTCCTCTGAAGTGGTCTC+TGG | - | chr4.3:32540089-32540108 | None:intergenic | 50.0% |
| !! | GGTCTCATTTGGTGTAGCTG+GGG | - | chr4.3:32542023-32542042 | None:intergenic | 50.0% |
| ACAGCAGCAGGCTTAGACAC+AGG | - | chr4.3:32541303-32541322 | None:intergenic | 55.0% | |
| AGAGGAGGAGGAGGTCGATT+TGG | + | chr4.3:32543236-32543255 | MS.gene003452:CDS | 55.0% | |
| AGAGGTTGCCGCCAAGCAAA+AGG | + | chr4.3:32539806-32539825 | MS.gene003452:CDS | 55.0% | |
| CAACAACCTCTCCGCAACCT+TGG | - | chr4.3:32542201-32542220 | None:intergenic | 55.0% | |
| CTCCTCACTCTCGTCAGAGT+CGG | - | chr4.3:32541701-32541720 | None:intergenic | 55.0% | |
| CTGGCCTCTTCCACCACTTT+GGG | - | chr4.3:32542629-32542648 | None:intergenic | 55.0% | |
| GCAGGCTGAGGAAGAAGTCA+AGG | + | chr4.3:32539755-32539774 | MS.gene003452:CDS | 55.0% | |
| TATAGGCAAGAGGCAGGCTG+AGG | + | chr4.3:32539743-32539762 | MS.gene003452:CDS | 55.0% | |
| TGACAGCTCCTCTTCCGATG+AGG | + | chr4.3:32540118-32540137 | MS.gene003452:CDS | 55.0% | |
| TTCCGACTCTGACGAGAGTG+AGG | + | chr4.3:32541696-32541715 | MS.gene003452:CDS | 55.0% | |
| TTCTGCATGAGCCAAAGGGG+GGG | - | chr4.3:32542715-32542734 | None:intergenic | 55.0% | |
| ! | ACTGGCCTCTTCCACCACTT+TGG | - | chr4.3:32542630-32542649 | None:intergenic | 55.0% |
| ! | CAAGGTTCTGGTGGTAGAGG+TGG | + | chr4.3:32543140-32543159 | MS.gene003452:CDS | 55.0% |
| ! | GACGTGGAGATGGTTGATGC+TGG | + | chr4.3:32541870-32541889 | MS.gene003452:CDS | 55.0% |
| ! | GGAAGAAGCGGTGGATTTGG+TGG | + | chr4.3:32543200-32543219 | MS.gene003452:CDS | 55.0% |
| ! | GGAGCAGGAGCTTTTGCAAC+AGG | - | chr4.3:32540020-32540039 | None:intergenic | 55.0% |
| ! | GGGGTCTTCTTTGAAGGAGC+AGG | - | chr4.3:32540035-32540054 | None:intergenic | 55.0% |
| ! | GGTGGAAGAAGCGGTGGATT+TGG | + | chr4.3:32543197-32543216 | MS.gene003452:CDS | 55.0% |
| ! | TCAGCCCAAAGTGGTGGAAG+AGG | + | chr4.3:32542622-32542641 | MS.gene003452:CDS | 55.0% |
| !! | AGGAGTGGTGGTGGTCGATT+TGG | + | chr4.3:32543170-32543189 | MS.gene003452:CDS | 55.0% |
| !! | AGTGGTGGTGGTCGATTTGG+TGG | + | chr4.3:32543173-32543192 | MS.gene003452:CDS | 55.0% |
| !! | CGCCAAGCAAAAGGCGTTGA+AGG | + | chr4.3:32539815-32539834 | MS.gene003452:CDS | 55.0% |
| !! | CTCTGAAGTGGTCTCTGGCT+GGG | - | chr4.3:32540084-32540103 | None:intergenic | 55.0% |
| !! | GAAGCGGTGGATTTGGTGGT+AGG | + | chr4.3:32543204-32543223 | MS.gene003452:CDS | 55.0% |
| !! | GAGGAGGTCGATTTGGTGGA+AGG | + | chr4.3:32543243-32543262 | MS.gene003452:CDS | 55.0% |
| !! | GGATTTGGTGGTAGGAGTGG+TGG | + | chr4.3:32543212-32543231 | MS.gene003452:CDS | 55.0% |
| !! | GGTGGATTTGGTGGTAGGAG+TGG | + | chr4.3:32543209-32543228 | MS.gene003452:CDS | 55.0% |
| AGAGGTGGAGGTGGAAGGAG+TGG | + | chr4.3:32543155-32543174 | MS.gene003452:CDS | 60.0% | |
| AGAGGTGGTCGAGGAGGAAG+AGG | + | chr4.3:32543278-32543297 | MS.gene003452:CDS | 60.0% | |
| CCAGCCAGAGACCACTTCAG+AGG | + | chr4.3:32540082-32540101 | MS.gene003452:CDS | 60.0% | |
| CGACTCTGACGAGAGTGAGG+AGG | + | chr4.3:32541699-32541718 | MS.gene003452:CDS | 60.0% | |
| CGAGAGTGAGGAGGAGAGTG+AGG | + | chr4.3:32541708-32541727 | MS.gene003452:CDS | 60.0% | |
| CGTCTTGCTTCGGATGGGGA+TGG | + | chr4.3:32542226-32542245 | MS.gene003452:CDS | 60.0% | |
| GGCTGCAGGTTTCTGAGCCA+AGG | - | chr4.3:32541040-32541059 | None:intergenic | 60.0% | |
| GTGGTAGAGGTGGAGGTGGA+AGG | + | chr4.3:32543150-32543169 | MS.gene003452:CDS | 60.0% | |
| TCTGGTGGTAGAGGTGGAGG+TGG | + | chr4.3:32543146-32543165 | MS.gene003452:CDS | 60.0% | |
| ! | AGGAGTGGTGGAAGAGGAGG+AGG | + | chr4.3:32543224-32543243 | MS.gene003452:CDS | 60.0% |
| ! | AGGGATAGTGGCGGTAGAGG+TGG | + | chr4.3:32543263-32543282 | MS.gene003452:CDS | 60.0% |
| ! | AGTGGTGGAAGAGGAGGAGG+AGG | + | chr4.3:32543227-32543246 | MS.gene003452:CDS | 60.0% |
| ! | GGAAGGGATAGTGGCGGTAG+AGG | + | chr4.3:32543260-32543279 | MS.gene003452:CDS | 60.0% |
| ! | GGTAGGAGTGGTGGAAGAGG+AGG | + | chr4.3:32543221-32543240 | MS.gene003452:CDS | 60.0% |
| ! | GGTGGTAGGAGTGGTGGAAG+AGG | + | chr4.3:32543218-32543237 | MS.gene003452:CDS | 60.0% |
| ! | GGTTCTGGTGGTAGAGGTGG+AGG | + | chr4.3:32543143-32543162 | MS.gene003452:CDS | 60.0% |
| !! | CCTCTGAAGTGGTCTCTGGC+TGG | - | chr4.3:32540085-32540104 | None:intergenic | 60.0% |
| !! | GGAGGAGGAGGTCGATTTGG+TGG | + | chr4.3:32543239-32543258 | MS.gene003452:CDS | 60.0% |
| !! | GGTGGTCGATTTGGTGGAGG+TGG | + | chr4.3:32543179-32543198 | MS.gene003452:CDS | 60.0% |
| !! | GGTGGTGGTCGATTTGGTGG+AGG | + | chr4.3:32543176-32543195 | MS.gene003452:CDS | 60.0% |
| AGTGGCGGTAGAGGTGGTCG+AGG | + | chr4.3:32543269-32543288 | MS.gene003452:CDS | 65.0% | |
| CGAGGAGGAAGAGGTGGTCG+TGG | + | chr4.3:32543287-32543306 | MS.gene003452:CDS | 65.0% | |
| GGAGGAAGAGGTGGTCGTGG+AGG | + | chr4.3:32543290-32543309 | MS.gene003452:CDS | 65.0% | |
| GGAGGTGGAAGGAGTGGTGG+TGG | + | chr4.3:32543161-32543180 | MS.gene003452:CDS | 65.0% | |
| GGTGGAGGTGGAAGAAGCGG+TGG | + | chr4.3:32543191-32543210 | MS.gene003452:CDS | 65.0% | |
| GGTGGAGGTGGAAGGAGTGG+TGG | + | chr4.3:32543158-32543177 | MS.gene003452:CDS | 65.0% | |
| GGTGGTCGAGGAGGAAGAGG+TGG | + | chr4.3:32543281-32543300 | MS.gene003452:CDS | 65.0% | |
| GGCGGTAGAGGTGGTCGAGG+AGG | + | chr4.3:32543272-32543291 | MS.gene003452:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32539708 | 32543576 | 32539708 | ID=MS.gene003452 |
| chr4.3 | mRNA | 32539708 | 32543576 | 32539708 | ID=MS.gene003452.t1;Parent=MS.gene003452 |
| chr4.3 | exon | 32539708 | 32539893 | 32539708 | ID=MS.gene003452.t1.exon1;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32539708 | 32539893 | 32539708 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32540014 | 32540151 | 32540014 | ID=MS.gene003452.t1.exon2;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32540014 | 32540151 | 32540014 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32540349 | 32540459 | 32540349 | ID=MS.gene003452.t1.exon3;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32540349 | 32540459 | 32540349 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32540611 | 32540703 | 32540611 | ID=MS.gene003452.t1.exon4;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32540611 | 32540703 | 32540611 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32540825 | 32540929 | 32540825 | ID=MS.gene003452.t1.exon5;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32540825 | 32540929 | 32540825 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32541048 | 32541146 | 32541048 | ID=MS.gene003452.t1.exon6;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32541048 | 32541146 | 32541048 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32541291 | 32541455 | 32541291 | ID=MS.gene003452.t1.exon7;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32541291 | 32541455 | 32541291 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32541670 | 32541759 | 32541670 | ID=MS.gene003452.t1.exon8;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32541670 | 32541759 | 32541670 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32541864 | 32541911 | 32541864 | ID=MS.gene003452.t1.exon9;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32541864 | 32541911 | 32541864 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32542013 | 32542101 | 32542013 | ID=MS.gene003452.t1.exon10;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32542013 | 32542101 | 32542013 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32542186 | 32542303 | 32542186 | ID=MS.gene003452.t1.exon11;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32542186 | 32542303 | 32542186 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32542418 | 32542509 | 32542418 | ID=MS.gene003452.t1.exon12;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32542418 | 32542509 | 32542418 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32542615 | 32542699 | 32542615 | ID=MS.gene003452.t1.exon13;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32542615 | 32542699 | 32542615 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32542819 | 32542913 | 32542819 | ID=MS.gene003452.t1.exon14;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32542819 | 32542913 | 32542819 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32543025 | 32543341 | 32543025 | ID=MS.gene003452.t1.exon15;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32543025 | 32543341 | 32543025 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| chr4.3 | exon | 32543548 | 32543576 | 32543548 | ID=MS.gene003452.t1.exon16;Parent=MS.gene003452.t1 |
| chr4.3 | CDS | 32543548 | 32543576 | 32543548 | ID=cds.MS.gene003452.t1;Parent=MS.gene003452.t1 |
| Gene Sequence |
| Protein sequence |
