Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52139.t1 | CAA61298.1 | 95.1 | 266 | 13 | 0 | 334 | 599 | 370 | 635 | 1.10E-103 | 387.5 |
MS.gene52139.t1 | CAA61298.1 | 100 | 29 | 0 | 0 | 1 | 29 | 1 | 29 | 1.30E-03 | 55.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52139.t1 | Q7XTT4 | 57.4 | 190 | 79 | 2 | 334 | 522 | 443 | 631 | 4.1e-54 | 214.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52139.t1 | Q40363 | 95.1 | 266 | 13 | 0 | 334 | 599 | 370 | 635 | 8.1e-104 | 387.5 |
MS.gene52139.t1 | Q40363 | 100.0 | 29 | 0 | 0 | 1 | 29 | 1 | 29 | 9.6e-04 | 55.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053492 | MS.gene52139 | 0.839893 | 1.21E-57 | -1.69E-46 |
MS.gene058030 | MS.gene52139 | 0.81456 | 1.45E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52139.t1 | MTR_4g074930 | 92.346 | 601 | 43 | 3 | 1 | 599 | 1 | 600 | 0.0 | 692 |
MS.gene52139.t1 | MTR_4g074930 | 90.349 | 601 | 43 | 4 | 1 | 599 | 1 | 588 | 0.0 | 691 |
MS.gene52139.t1 | MTR_4g074930 | 85.377 | 636 | 55 | 4 | 1 | 599 | 1 | 635 | 0.0 | 682 |
MS.gene52139.t1 | MTR_4g074930 | 83.491 | 636 | 55 | 5 | 1 | 599 | 1 | 623 | 0.0 | 680 |
MS.gene52139.t1 | MTR_1g036430 | 43.023 | 258 | 118 | 6 | 309 | 548 | 415 | 661 | 3.22e-41 | 159 |
MS.gene52139.t1 | MTR_1g036430 | 48.611 | 144 | 69 | 4 | 316 | 455 | 269 | 411 | 3.26e-34 | 138 |
MS.gene52139.t1 | MTR_3g050860 | 54.730 | 148 | 48 | 3 | 286 | 425 | 205 | 341 | 2.32e-36 | 140 |
MS.gene52139.t1 | MTR_3g050860 | 48.673 | 113 | 22 | 4 | 28 | 138 | 159 | 237 | 2.00e-13 | 72.4 |
MS.gene52139.t1 | MTR_8g432580 | 87.838 | 74 | 9 | 0 | 32 | 105 | 52 | 125 | 3.71e-22 | 94.0 |
MS.gene52139.t1 | MTR_1g115375 | 27.053 | 207 | 130 | 6 | 328 | 529 | 206 | 396 | 9.49e-16 | 80.5 |
MS.gene52139.t1 | MTR_8g092550 | 29.032 | 155 | 103 | 4 | 340 | 492 | 202 | 351 | 4.17e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52139.t1 | AT3G18610 | 49.508 | 305 | 124 | 12 | 306 | 599 | 350 | 635 | 4.72e-71 | 241 |
MS.gene52139.t1 | AT3G18610 | 49.508 | 305 | 124 | 12 | 306 | 599 | 320 | 605 | 4.82e-71 | 240 |
MS.gene52139.t1 | AT3G18610 | 49.508 | 305 | 124 | 12 | 306 | 599 | 290 | 575 | 5.31e-71 | 239 |
MS.gene52139.t1 | AT1G45100 | 45.238 | 84 | 46 | 0 | 329 | 412 | 236 | 319 | 5.52e-12 | 68.9 |
Find 162 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACCAGATTCAAAATCTTT+TGG | 0.220651 | 4.1:-29225134 | None:intergenic |
CTGGTCTCATTTGGTGTAGC+TGG | 0.234972 | 4.1:-29224280 | None:intergenic |
GATGGGGATGGAGTATTTAA+AGG | 0.245284 | 4.1:+29224494 | MS.gene52139:CDS |
AGTAATTACCTATTATTATT+AGG | 0.251107 | 4.1:-29224752 | None:intergenic |
GCTAAATTGATGGAGCATTT+TGG | 0.264975 | 4.1:+29225077 | MS.gene52139:CDS |
TTTGGTGTAGCTGGGGTATT+AGG | 0.268355 | 4.1:-29224271 | None:intergenic |
TTCACTAACCTCTTTCTTAG+AGG | 0.273370 | 4.1:-29223642 | None:intergenic |
ATGGTTGATGCTGGCAAATC+TGG | 0.301012 | 4.1:+29224148 | MS.gene52139:CDS |
CTGGCCTCTTCCACCACTTT+GGG | 0.301540 | 4.1:-29224872 | None:intergenic |
GGTGGAAGAAGCGGTGGATT+TGG | 0.317426 | 4.1:+29225418 | MS.gene52139:CDS |
CATTTACTCCTAATAATAAT+AGG | 0.329724 | 4.1:+29224744 | MS.gene52139:CDS |
CCTCTGAAGTGGTCTCTGGC+TGG | 0.335134 | 4.1:-29222311 | None:intergenic |
GAACTTGCAGCTTTCTTTGT+GGG | 0.341562 | 4.1:-29223320 | None:intergenic |
TCAGATAAGAGCTAAATTGA+TGG | 0.346839 | 4.1:+29225067 | MS.gene52139:intron |
GAAGTATCATCTTTCTTTGC+GGG | 0.350810 | 4.1:-29222620 | None:intergenic |
TTTGGGATTGACACCCTTGT+AGG | 0.354344 | 4.1:-29225116 | None:intergenic |
GCGGATTTCTTGCTTGATTT+AGG | 0.360381 | 4.1:-29221129 | None:intergenic |
GATGGAGTATTTAAAGGCTT+TGG | 0.363032 | 4.1:+29224500 | MS.gene52139:CDS |
TTAGCTGGGGTCTTCTTTGA+AGG | 0.364114 | 4.1:-29222267 | None:intergenic |
ATCGAAAACACCTCAGAAAA+AGG | 0.368536 | 4.1:+29224003 | MS.gene52139:CDS |
TTTGAGCCACTGGTCTCATT+TGG | 0.369919 | 4.1:-29224289 | None:intergenic |
GGAAGAGGAGGAGGTCGATT+TGG | 0.372331 | 4.1:+29225454 | MS.gene52139:CDS |
ACCTTGACTATCTCTAGGTT+TGG | 0.378375 | 4.1:-29225344 | None:intergenic |
CTCTGAAGTGGTCTCTGGCT+GGG | 0.379329 | 4.1:-29222310 | None:intergenic |
AGGAGTGGTGGTGGTCGATT+TGG | 0.380127 | 4.1:+29225391 | MS.gene52139:CDS |
TGTTCACAGGTTTGCATACA+TGG | 0.383254 | 4.1:+29225237 | MS.gene52139:intron |
ACTGGCCTCTTCCACCACTT+TGG | 0.404674 | 4.1:-29224873 | None:intergenic |
ATGCCAATAGCTTACACTTT+GGG | 0.410425 | 4.1:-29224552 | None:intergenic |
AGGAGTGGTGGAAGAGGAGG+AGG | 0.413886 | 4.1:+29225445 | MS.gene52139:CDS |
GATTCCTCTGAAGTGGTCTC+TGG | 0.415465 | 4.1:-29222315 | None:intergenic |
CCTAGAGATAGTCAAGGTTC+TGG | 0.420795 | 4.1:+29225349 | MS.gene52139:CDS |
CACTTCTTCCTCATCGGAAG+AGG | 0.423585 | 4.1:-29222355 | None:intergenic |
GAGGAGGTCGATTTGGTGGA+AGG | 0.425269 | 4.1:+29225461 | MS.gene52139:CDS |
TGGTCTCATTTGGTGTAGCT+GGG | 0.430539 | 4.1:-29224279 | None:intergenic |
AGTCTCAAACAGTATTTGTC+AGG | 0.432245 | 4.1:+29224893 | MS.gene52139:CDS |
GAGCACGATGCAACAGTTCT+TGG | 0.434082 | 4.1:-29224691 | None:intergenic |
AGTGGTGGTGGTCGATTTGG+TGG | 0.436467 | 4.1:+29225394 | MS.gene52139:CDS |
GTTGTTTCTCCAGTGAAGTC+TGG | 0.441415 | 4.1:+29221273 | MS.gene52139:CDS |
GAAAATTTCTTCCAAGGTTG+CGG | 0.442385 | 4.1:+29224443 | MS.gene52139:CDS |
AACGTTTCACGTCGAAGGAC+AGG | 0.443778 | 4.1:-29224330 | None:intergenic |
GGTAGGAGTGGTGGAAGAGG+AGG | 0.445688 | 4.1:+29225442 | MS.gene52139:CDS |
GGAAGGGATAGTGGCGGTAG+AGG | 0.446801 | 4.1:+29225478 | MS.gene52139:CDS |
CGCCAAGCAAAAGGCGTTGA+AGG | 0.448961 | 4.1:+29222040 | MS.gene52139:CDS |
CCTTTCTTTCCAGACTTCAC+TGG | 0.449206 | 4.1:-29221282 | None:intergenic |
GGTGGTCGATTTGGTGGAGG+TGG | 0.450277 | 4.1:+29225400 | MS.gene52139:CDS |
CGATTTGGTGGAAGGGATAG+TGG | 0.450518 | 4.1:+29225469 | MS.gene52139:CDS |
GGTGGTAGGAGTGGTGGAAG+AGG | 0.452249 | 4.1:+29225439 | MS.gene52139:CDS |
GGTTCTGGTGGTAGAGGTGG+AGG | 0.454259 | 4.1:+29225364 | MS.gene52139:CDS |
CTTCATGAAAGTGAACTTGA+TGG | 0.454842 | 4.1:+29225298 | MS.gene52139:CDS |
GGGGTCTTCTTTGAAGGAGC+AGG | 0.459580 | 4.1:-29222261 | None:intergenic |
GACTTGATTTAGCTCGGGAG+AGG | 0.461620 | 4.1:+29224717 | MS.gene52139:CDS |
TCTGGTGGTAGAGGTGGAGG+TGG | 0.461700 | 4.1:+29225367 | MS.gene52139:CDS |
CTCTCCGACTTGATTTAGCT+CGG | 0.462101 | 4.1:+29224711 | MS.gene52139:CDS |
ATCTTCATCGGATTCTTCAT+CGG | 0.463604 | 4.1:-29223357 | None:intergenic |
GTGGTAGAGGTGGAGGTGGA+AGG | 0.463792 | 4.1:+29225371 | MS.gene52139:CDS |
AGAGGAGGAGGTCGATTTGG+TGG | 0.465575 | 4.1:+29225457 | MS.gene52139:CDS |
CACTTTCACTTCTTCCTCAT+CGG | 0.467568 | 4.1:-29222361 | None:intergenic |
CAACAACCTCTCCGCAACCT+TGG | 0.467608 | 4.1:-29224454 | None:intergenic |
GGCTCAAAGACACTATTTGT+TGG | 0.470421 | 4.1:+29224304 | MS.gene52139:CDS |
GGAGGTGGAAGGAGTGGTGG+TGG | 0.477011 | 4.1:+29225382 | MS.gene52139:CDS |
AGAGGTGGTCGAGGAGGAAG+AGG | 0.478640 | 4.1:+29225496 | MS.gene52139:CDS |
AGAGGTTGTCGCCAAGCAAA+AGG | 0.478711 | 4.1:+29222031 | MS.gene52139:CDS |
TAAGAAAGAGGTTAGTGAAT+CGG | 0.481358 | 4.1:+29223646 | MS.gene52139:CDS |
GCTCAAAGACACTATTTGTT+GGG | 0.483084 | 4.1:+29224305 | MS.gene52139:CDS |
TTCAGAGAAAATTTCTTCCA+AGG | 0.486230 | 4.1:+29224437 | MS.gene52139:intron |
TTAACTCACTTCATCTTCAT+CGG | 0.487222 | 4.1:-29223369 | None:intergenic |
AGAGGTGGAGGTGGAAGGAG+TGG | 0.489917 | 4.1:+29225376 | MS.gene52139:CDS |
TAAGAATCTTGGAGAGGAAG+AGG | 0.490575 | 4.1:+29224924 | MS.gene52139:CDS |
GTACTTGTGGGCAACCTACA+AGG | 0.491737 | 4.1:+29225102 | MS.gene52139:CDS |
TGTTGATGTACGTCTTGCTT+CGG | 0.495897 | 4.1:+29224472 | MS.gene52139:CDS |
AGAACTTGCAGCTTTCTTTG+TGG | 0.496340 | 4.1:-29223321 | None:intergenic |
AGAACTATCATCTTTCTTTG+CGG | 0.496659 | 4.1:-29223104 | None:intergenic |
ATGTACGTCTTGCTTCGGAT+GGG | 0.500671 | 4.1:+29224477 | MS.gene52139:CDS |
AGTCAAGGTTCTGGTGGTAG+AGG | 0.500732 | 4.1:+29225358 | MS.gene52139:CDS |
CGTCTTGCTTCGGATGGGGA+TGG | 0.500867 | 4.1:+29224482 | MS.gene52139:CDS |
ATACCTTCAGAAGCAAAGCT+TGG | 0.501215 | 4.1:-29225541 | None:intergenic |
CGAGGAGGAAGAGGTGGTCG+TGG | 0.503442 | 4.1:+29225505 | MS.gene52139:CDS |
GATGGAACAGCTTTAGCTGC+GGG | 0.503596 | 4.1:-29222581 | None:intergenic |
CCAGTGAAGTCTGGAAAGAA+AGG | 0.505222 | 4.1:+29221282 | MS.gene52139:CDS |
TAATAGGCACTTGAGATGAA+TGG | 0.505941 | 4.1:+29224668 | MS.gene52139:intron |
AGAAGTATCATCTTTCTTTG+CGG | 0.506839 | 4.1:-29222621 | None:intergenic |
ACCTCTTTCTTAGAGGCCAC+AGG | 0.507804 | 4.1:-29223635 | None:intergenic |
TTCACTGGAGAAACAACAAC+AGG | 0.510600 | 4.1:-29221267 | None:intergenic |
AAATAGTGTCTTTGAGCCAC+TGG | 0.511032 | 4.1:-29224299 | None:intergenic |
GAAGCGGTGGATTTGGTGGT+AGG | 0.512935 | 4.1:+29225425 | MS.gene52139:CDS |
GGTGGAGGTGGAAGGAGTGG+TGG | 0.513178 | 4.1:+29225379 | MS.gene52139:CDS |
ACTTGATTTAGCTCGGGAGA+GGG | 0.513360 | 4.1:+29224718 | MS.gene52139:CDS |
ACCCTAGTCGTCGGCAAAAG+TGG | 0.515851 | 4.1:-29225797 | None:intergenic |
GGATTTGGTGGTAGGAGTGG+TGG | 0.516006 | 4.1:+29225433 | MS.gene52139:CDS |
CTCTGAGGAATCCGAGGATG+AGG | 0.516426 | 4.1:+29222097 | MS.gene52139:CDS |
GGTGGTGGTCGATTTGGTGG+AGG | 0.516852 | 4.1:+29225397 | MS.gene52139:CDS |
TCAGCCCAAAGTGGTGGAAG+AGG | 0.519792 | 4.1:+29224868 | MS.gene52139:CDS |
GGAAGAAGCGGTGGATTTGG+TGG | 0.521554 | 4.1:+29225421 | MS.gene52139:CDS |
AAACCAAGCTTTGCTTCTGA+AGG | 0.523386 | 4.1:+29225538 | MS.gene52139:CDS |
CTTTGATACAGGCAAGAGGC+AGG | 0.524347 | 4.1:+29221962 | MS.gene52139:intron |
GTCAGAACGTTTCACGTCGA+AGG | 0.526938 | 4.1:-29224335 | None:intergenic |
ACAGCAGCAGGCTTAGACAC+AGG | 0.527887 | 4.1:-29223536 | None:intergenic |
GGCGTTGAAGGTAGTCAAGA+AGG | 0.528027 | 4.1:+29222052 | MS.gene52139:CDS |
TTTGAATCTGGTTATTCCAA+GGG | 0.529591 | 4.1:+29225143 | MS.gene52139:CDS |
TCTCCGACTTGATTTAGCTC+GGG | 0.533160 | 4.1:+29224712 | MS.gene52139:CDS |
ATCTTCTGACGAAGAAGATA+AGG | 0.533278 | 4.1:+29223144 | MS.gene52139:CDS |
AGGGATAGTGGCGGTAGAGG+TGG | 0.538819 | 4.1:+29225481 | MS.gene52139:CDS |
GGTGGATTTGGTGGTAGGAG+TGG | 0.540537 | 4.1:+29225430 | MS.gene52139:CDS |
CCAGAACCTTGACTATCTCT+AGG | 0.540562 | 4.1:-29225349 | None:intergenic |
AGTGGCGGTAGAGGTGGTCG+AGG | 0.540676 | 4.1:+29225487 | MS.gene52139:CDS |
GATGTACGTCTTGCTTCGGA+TGG | 0.542059 | 4.1:+29224476 | MS.gene52139:CDS |
CAAGGTTCTGGTGGTAGAGG+TGG | 0.544275 | 4.1:+29225361 | MS.gene52139:CDS |
GCAGGCTGAGGAAGAAGTCA+AGG | 0.547712 | 4.1:+29221980 | MS.gene52139:CDS |
AGAGTCAGATTCCTCTGAAG+TGG | 0.548311 | 4.1:-29222322 | None:intergenic |
ACAGATCAAGGACGTGGAGA+TGG | 0.552435 | 4.1:+29224129 | MS.gene52139:intron |
AGGAGGTCGATTTGGTGGAA+GGG | 0.553576 | 4.1:+29225462 | MS.gene52139:CDS |
ACCTGTGGCCTCTAAGAAAG+AGG | 0.554114 | 4.1:+29223634 | MS.gene52139:CDS |
CTCCTCACTCTCGTCAGAGT+CGG | 0.559018 | 4.1:-29223963 | None:intergenic |
TTCTTCATCGGATTCTTCAT+CGG | 0.560281 | 4.1:-29223345 | None:intergenic |
GAAATATAATACCTCATCCT+CGG | 0.560673 | 4.1:-29222108 | None:intergenic |
GGATTCCTCAGAGGATTCCT+CGG | 0.566082 | 4.1:-29222087 | None:intergenic |
TACAGGCAAGAGGCAGGCTG+AGG | 0.568664 | 4.1:+29221968 | MS.gene52139:intron |
AGTGAGTGCAAAGAAGCAAA+AGG | 0.568954 | 4.1:+29222004 | MS.gene52139:CDS |
GTCTCAAACAGTATTTGTCA+GGG | 0.570865 | 4.1:+29224894 | MS.gene52139:CDS |
TGTACGTCTTGCTTCGGATG+GGG | 0.571328 | 4.1:+29224478 | MS.gene52139:CDS |
CGAGAGTGAGGAGGAGAGTG+AGG | 0.574779 | 4.1:+29223973 | MS.gene52139:CDS |
TGGTTGATGCTGGCAAATCT+GGG | 0.576768 | 4.1:+29224149 | MS.gene52139:CDS |
CTTGATTTAGCTCGGGAGAG+GGG | 0.578698 | 4.1:+29224719 | MS.gene52139:CDS |
GGTGGAGGTGGAAGAAGCGG+TGG | 0.580780 | 4.1:+29225412 | MS.gene52139:CDS |
AACTACTCAGCCCAAAGTGG+TGG | 0.591190 | 4.1:+29224862 | MS.gene52139:CDS |
GGCGGTAGAGGTGGTCGAGG+AGG | 0.593185 | 4.1:+29225490 | MS.gene52139:CDS |
TGACAAATACTGTTTGAGAC+TGG | 0.594261 | 4.1:-29224891 | None:intergenic |
TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 4.1:+29224526 | MS.gene52139:CDS |
GGTCTCATTTGGTGTAGCTG+GGG | 0.600709 | 4.1:-29224278 | None:intergenic |
AAAGAAGCAAAAGGTAGAAG+AGG | 0.600905 | 4.1:+29222013 | MS.gene52139:CDS |
TTCCGACTCTGACGAGAGTG+AGG | 0.613333 | 4.1:+29223961 | MS.gene52139:CDS |
TTTGGTGGAGGTGGAAGAAG+CGG | 0.617758 | 4.1:+29225409 | MS.gene52139:CDS |
GACGTGGAGATGGTTGATGC+TGG | 0.618173 | 4.1:+29224139 | MS.gene52139:CDS |
GTTGAAACAGATCAAGGACG+TGG | 0.624210 | 4.1:+29224123 | MS.gene52139:intron |
GAAGGAGGAAAGTAGTTCCG+AGG | 0.625559 | 4.1:+29222070 | MS.gene52139:CDS |
CCAGCCAGAGACCACTTCAG+AGG | 0.625597 | 4.1:+29222311 | MS.gene52139:CDS |
AGAGATAGTCAAGGTTCTGG+TGG | 0.625604 | 4.1:+29225352 | MS.gene52139:CDS |
GGTGGTCGAGGAGGAAGAGG+TGG | 0.627115 | 4.1:+29225499 | MS.gene52139:CDS |
GAGTGATTCGTCTGATGACG+AGG | 0.627287 | 4.1:+29223670 | MS.gene52139:CDS |
TGAATCTTCTGATGAAGACA+AGG | 0.628462 | 4.1:+29222667 | MS.gene52139:CDS |
TTGAATCTGGTTATTCCAAG+GGG | 0.634787 | 4.1:+29225144 | MS.gene52139:CDS |
AAAACTGCCACCCTAGTCGT+CGG | 0.640972 | 4.1:-29225806 | None:intergenic |
TACTTGTGGGCAACCTACAA+GGG | 0.641550 | 4.1:+29225103 | MS.gene52139:CDS |
GGAGGAAGAGGTGGTCGTGG+AGG | 0.644972 | 4.1:+29225508 | MS.gene52139:CDS |
CGACTCTGACGAGAGTGAGG+AGG | 0.647070 | 4.1:+29223964 | MS.gene52139:CDS |
GGAATCCTCTGAGGAATCCG+AGG | 0.649706 | 4.1:+29222091 | MS.gene52139:CDS |
TCTCAAACAGTATTTGTCAG+GGG | 0.650987 | 4.1:+29224895 | MS.gene52139:CDS |
TTGACTTTGATACAGGCAAG+AGG | 0.653571 | 4.1:+29221958 | MS.gene52139:intron |
CTCATCCTCGGATTCCTCAG+AGG | 0.653760 | 4.1:-29222096 | None:intergenic |
TGACAGCTCCTCTTCCGATG+AGG | 0.667005 | 4.1:+29222347 | MS.gene52139:CDS |
AGATGGAACAGCTTTAGCTG+CGG | 0.669599 | 4.1:-29222582 | None:intergenic |
GCCAAACCTAGAGATAGTCA+AGG | 0.670318 | 4.1:+29225343 | MS.gene52139:CDS |
TCTCCCGAGCTAAATCAAGT+CGG | 0.679997 | 4.1:-29224715 | None:intergenic |
TGATGGATATCAGTTGTCAG+TGG | 0.682674 | 4.1:+29225315 | MS.gene52139:CDS |
GTTGAAGGTAGTCAAGAAGG+AGG | 0.683060 | 4.1:+29222055 | MS.gene52139:CDS |
TGATGAAGATAAGAAACCTG+TGG | 0.691109 | 4.1:+29223619 | MS.gene52139:CDS |
GGATAAGATGAATATTGACA+AGG | 0.692392 | 4.1:+29223934 | MS.gene52139:intron |
TTTCTTCCAAGGTTGCGGAG+AGG | 0.694587 | 4.1:+29224448 | MS.gene52139:CDS |
AGTAACTACTCAGCCCAAAG+TGG | 0.695978 | 4.1:+29224859 | MS.gene52139:intron |
TTTGGTGGAAGGGATAGTGG+CGG | 0.720960 | 4.1:+29225472 | MS.gene52139:CDS |
TAGTTCCGAGGAATCCTCTG+AGG | 0.721411 | 4.1:+29222082 | MS.gene52139:CDS |
GCTACACCAAATGAGACCAG+TGG | 0.725457 | 4.1:+29224283 | MS.gene52139:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAAAAAAATTAAAAA+AGG | - | chr4.1:29223033-29223052 | None:intergenic | 0.0% |
!!! | TTTTTAATTTTTTTTTTTTA+TGG | + | chr4.1:29223033-29223052 | MS.gene52139:intron | 0.0% |
!! | AATACAATGATATAAAATTA+AGG | - | chr4.1:29222981-29223000 | None:intergenic | 10.0% |
!! | AGGAAAAAATATATATTTAA+TGG | - | chr4.1:29223256-29223275 | None:intergenic | 10.0% |
!! | ATACAATGATATAAAATTAA+GGG | - | chr4.1:29222980-29222999 | None:intergenic | 10.0% |
!! | GGAAAAAATATATATTTAAT+GGG | - | chr4.1:29223255-29223274 | None:intergenic | 10.0% |
!! | TTTATATTTCATTTCAATAT+AGG | - | chr4.1:29223803-29223822 | None:intergenic | 10.0% |
!!! | TATTTGAATTTTATTTTCAT+GGG | + | chr4.1:29221364-29221383 | MS.gene52139:intron | 10.0% |
!!! | TTAAATATATATTTTTTCCT+TGG | + | chr4.1:29223256-29223275 | MS.gene52139:intron | 10.0% |
!!! | TTATTTGAATTTTATTTTCA+TGG | + | chr4.1:29221363-29221382 | MS.gene52139:intron | 10.0% |
!!! | TTTTGATTTTAATTTTAGTT+TGG | + | chr4.1:29224056-29224075 | MS.gene52139:intron | 10.0% |
!!! | TTTTTTTTTTTTTTTTGTAC+TGG | + | chr4.1:29224202-29224221 | MS.gene52139:intron | 10.0% |
!! | AAAAAAAAGTGAATTATAGA+GGG | - | chr4.1:29222549-29222568 | None:intergenic | 15.0% |
!! | AGTAATTACCTATTATTATT+AGG | - | chr4.1:29224755-29224774 | None:intergenic | 15.0% |
!! | ATTAAAAATACAAGGAATAA+TGG | - | chr4.1:29224831-29224850 | None:intergenic | 15.0% |
!! | ATTGAAATGAAATATAAACA+TGG | + | chr4.1:29223805-29223824 | MS.gene52139:intron | 15.0% |
!! | GCAATAATATTAAAAATACA+AGG | - | chr4.1:29224839-29224858 | None:intergenic | 15.0% |
!! | GTATCAAAAACTATATTAAT+TGG | - | chr4.1:29225607-29225626 | None:intergenic | 15.0% |
!! | TAAAAAAAAGTGAATTATAG+AGG | - | chr4.1:29222550-29222569 | None:intergenic | 15.0% |
!! | TAATCAAATAATAAACATGA+GGG | - | chr4.1:29224992-29225011 | None:intergenic | 15.0% |
!!! | ACAATATCTTTAAAAAAACT+CGG | - | chr4.1:29221538-29221557 | None:intergenic | 15.0% |
!!! | ATGTTTAAGATATTAATCAA+AGG | - | chr4.1:29222434-29222453 | None:intergenic | 15.0% |
!!! | ATTTTATTGTTTTTGATTCA+TGG | + | chr4.1:29221446-29221465 | MS.gene52139:intron | 15.0% |
!!! | TGTATTTACAATTTTTTGTT+TGG | + | chr4.1:29222995-29223014 | MS.gene52139:intron | 15.0% |
!!! | TTAAAGATGATATTTTTACT+TGG | + | chr4.1:29221413-29221432 | MS.gene52139:intron | 15.0% |
!!! | TTTTATTGTTTTTGATTCAT+GGG | + | chr4.1:29221447-29221466 | MS.gene52139:intron | 15.0% |
!! | AGAACATCAAATAAAATTGA+AGG | - | chr4.1:29221814-29221833 | None:intergenic | 20.0% |
!! | AGATGTGACATTTAAATATA+TGG | - | chr4.1:29223423-29223442 | None:intergenic | 20.0% |
!! | ATAAAAAACATGAGTTATAG+AGG | - | chr4.1:29222813-29222832 | None:intergenic | 20.0% |
!! | ATATCATGCTATAAACTAAA+GGG | - | chr4.1:29222730-29222749 | None:intergenic | 20.0% |
!! | ATCAATCTCTTGTTAATTTA+AGG | + | chr4.1:29221172-29221191 | MS.gene52139:intron | 20.0% |
!! | ATGAAATATAAACATGGTAA+TGG | + | chr4.1:29223811-29223830 | MS.gene52139:intron | 20.0% |
!! | CAATAAAAAAAACACAACAT+CGG | - | chr4.1:29221931-29221950 | None:intergenic | 20.0% |
!! | CATTTACTCCTAATAATAAT+AGG | + | chr4.1:29224744-29224763 | MS.gene52139:CDS | 20.0% |
!! | CTAATCAAATAATAAACATG+AGG | - | chr4.1:29224993-29225012 | None:intergenic | 20.0% |
!! | TAAAAAACATGAGTTATAGA+GGG | - | chr4.1:29222812-29222831 | None:intergenic | 20.0% |
!! | TATATCATGCTATAAACTAA+AGG | - | chr4.1:29222731-29222750 | None:intergenic | 20.0% |
!! | TGATAAACAAAACAAAAAGT+TGG | - | chr4.1:29222784-29222803 | None:intergenic | 20.0% |
!! | TTGTTTGCATGTTTAATAAT+AGG | + | chr4.1:29224652-29224671 | MS.gene52139:intron | 20.0% |
!!! | AAAGTGATTTTTTTTTTCTC+TGG | + | chr4.1:29221889-29221908 | MS.gene52139:intron | 20.0% |
!!! | AATAAAATTGAAGGAGTTTT+TGG | - | chr4.1:29221805-29221824 | None:intergenic | 20.0% |
!!! | AATATTTTTTACTTCAGTTC+TGG | + | chr4.1:29225725-29225744 | MS.gene52139:intron | 20.0% |
!!! | GTTTTAAAGAAAAGAACAAT+AGG | - | chr4.1:29222525-29222544 | None:intergenic | 20.0% |
!!! | TATTGTGTTATTGATACAAT+GGG | + | chr4.1:29223894-29223913 | MS.gene52139:intron | 20.0% |
!!! | TCTATAACTCATGTTTTTTA+TGG | + | chr4.1:29222812-29222831 | MS.gene52139:intron | 20.0% |
!!! | TTATTGTGTTATTGATACAA+TGG | + | chr4.1:29223893-29223912 | MS.gene52139:intron | 20.0% |
!!! | TTGTTCTAGCTATAAATTAA+AGG | - | chr4.1:29222754-29222773 | None:intergenic | 20.0% |
!!! | TTTGTTTTTGATTTGTTTGT+AGG | + | chr4.1:29221233-29221252 | MS.gene52139:intron | 20.0% |
! | AAATCATACAACCATATGAA+AGG | - | chr4.1:29223396-29223415 | None:intergenic | 25.0% |
! | ATGTTAATATAGCTGTTGAT+TGG | + | chr4.1:29221697-29221716 | MS.gene52139:intron | 25.0% |
! | GAAGTAAAAAATATTGCAAG+CGG | - | chr4.1:29225720-29225739 | None:intergenic | 25.0% |
! | TAAATATACTTGTAGTAGCA+TGG | + | chr4.1:29223841-29223860 | MS.gene52139:intron | 25.0% |
! | TGAAAACTTTACTTACTTCA+TGG | + | chr4.1:29225212-29225231 | MS.gene52139:intron | 25.0% |
! | TTATATCATAAACACTGTGT+TGG | + | chr4.1:29222496-29222515 | MS.gene52139:intron | 25.0% |
!! | AACCAGATTCAAAATCTTTT+GGG | - | chr4.1:29225136-29225155 | None:intergenic | 25.0% |
!! | ATGCTTTAATGCATTTTGAA+TGG | + | chr4.1:29222138-29222157 | MS.gene52139:intron | 25.0% |
!! | GATACAGCTTTTCAATTAAA+AGG | + | chr4.1:29225622-29225641 | MS.gene52139:intron | 25.0% |
!! | TAACCAGATTCAAAATCTTT+TGG | - | chr4.1:29225137-29225156 | None:intergenic | 25.0% |
!! | TATGTCATGTTAATTTTACG+TGG | + | chr4.1:29222214-29222233 | MS.gene52139:intron | 25.0% |
!! | TTGATGAAAAAAGCATACTT+TGG | - | chr4.1:29221157-29221176 | None:intergenic | 25.0% |
!!! | AACACTCTTTTTTGTTAAAG+AGG | - | chr4.1:29225577-29225596 | None:intergenic | 25.0% |
!!! | AAGGAGTTTTTGGTAAAAAT+CGG | - | chr4.1:29221795-29221814 | None:intergenic | 25.0% |
!!! | ACATTTTGAAGTTTATTGCA+TGG | + | chr4.1:29222696-29222715 | MS.gene52139:intron | 25.0% |
!!! | ATGCTACTATATTTTTTGTG+AGG | - | chr4.1:29223777-29223796 | None:intergenic | 25.0% |
!!! | CGATGTTGTGTTTTTTTTAT+TGG | + | chr4.1:29221929-29221948 | MS.gene52139:intron | 25.0% |
!!! | CTTTTTTGTTAAAGAGGAAA+AGG | - | chr4.1:29225571-29225590 | None:intergenic | 25.0% |
AAAGCTGTTCCATCTAAAAA+TGG | + | chr4.1:29222590-29222609 | MS.gene52139:CDS | 30.0% | |
AAATCGAAGCAGAAAAGTAA+AGG | - | chr4.1:29221313-29221332 | None:intergenic | 30.0% | |
AAGCTGTTCCATCTAAAAAT+GGG | + | chr4.1:29222591-29222610 | MS.gene52139:CDS | 30.0% | |
ACTGGAGATAATTTAAGTCA+AGG | + | chr4.1:29224220-29224239 | MS.gene52139:intron | 30.0% | |
AGAACTATCATCTTTCTTTG+CGG | - | chr4.1:29223107-29223126 | None:intergenic | 30.0% | |
AGTGAGTTAAACCTTTCATA+TGG | + | chr4.1:29223382-29223401 | MS.gene52139:intron | 30.0% | |
ATTCATGTTGAAACAGATCA+AGG | + | chr4.1:29224117-29224136 | MS.gene52139:intron | 30.0% | |
CAAAAAATATAGTAGCACGT+AGG | + | chr4.1:29223750-29223769 | MS.gene52139:intron | 30.0% | |
CAATCATATAAATGCCTCAA+TGG | - | chr4.1:29221634-29221653 | None:intergenic | 30.0% | |
CAATGGACAGAAAAAACAAT+TGG | - | chr4.1:29221617-29221636 | None:intergenic | 30.0% | |
CCATACATTGAATGAATACA+TGG | + | chr4.1:29225693-29225712 | MS.gene52139:intron | 30.0% | |
CCATGTATTCATTCAATGTA+TGG | - | chr4.1:29225696-29225715 | None:intergenic | 30.0% | |
GAAATATAATACCTCATCCT+CGG | - | chr4.1:29222111-29222130 | None:intergenic | 30.0% | |
GATCTGTTTCAACATGAATA+TGG | - | chr4.1:29224116-29224135 | None:intergenic | 30.0% | |
GGATAAGATGAATATTGACA+AGG | + | chr4.1:29223934-29223953 | MS.gene52139:intron | 30.0% | |
GTGATTTATGCTATGAAGTT+AGG | + | chr4.1:29221653-29221672 | MS.gene52139:intron | 30.0% | |
TAAGAAAGAGGTTAGTGAAT+CGG | + | chr4.1:29223646-29223665 | MS.gene52139:CDS | 30.0% | |
TAATGGAATCAAAACATGTG+AGG | - | chr4.1:29224814-29224833 | None:intergenic | 30.0% | |
TATGCTACCTTTCTACTAAA+GGG | + | chr4.1:29223442-29223461 | MS.gene52139:intron | 30.0% | |
TCAGATAAGAGCTAAATTGA+TGG | + | chr4.1:29225067-29225086 | MS.gene52139:intron | 30.0% | |
TTAACTCACTTCATCTTCAT+CGG | - | chr4.1:29223372-29223391 | None:intergenic | 30.0% | |
TTCAGAGAAAATTTCTTCCA+AGG | + | chr4.1:29224437-29224456 | MS.gene52139:intron | 30.0% | |
TTTGAATCTGGTTATTCCAA+GGG | + | chr4.1:29225143-29225162 | MS.gene52139:CDS | 30.0% | |
! | AAAAAAGCATACTTTGGTAG+CGG | - | chr4.1:29221151-29221170 | None:intergenic | 30.0% |
! | ATCCCAAAAGATTTTGAATC+TGG | + | chr4.1:29225131-29225150 | MS.gene52139:CDS | 30.0% |
! | TTTCTCACTCATGTGATTTT+TGG | + | chr4.1:29224369-29224388 | MS.gene52139:intron | 30.0% |
! | TTTTGAATCTGGTTATTCCA+AGG | + | chr4.1:29225142-29225161 | MS.gene52139:CDS | 30.0% |
! | TTTTGATAAGAATCTTGGAG+AGG | + | chr4.1:29224918-29224937 | MS.gene52139:CDS | 30.0% |
!! | AGAAGTATCATCTTTCTTTG+CGG | - | chr4.1:29222624-29222643 | None:intergenic | 30.0% |
!! | TTAAGGGTATTATCATCATG+CGG | - | chr4.1:29222964-29222983 | None:intergenic | 30.0% |
!!! | ATTGTTTTTTCTGTCCATTG+AGG | + | chr4.1:29221617-29221636 | MS.gene52139:intron | 30.0% |
!!! | GTGCTACTATATTTTTTGTG+AGG | - | chr4.1:29223748-29223767 | None:intergenic | 30.0% |
!!! | TGAACTTTTTGCCATTTTCA+GGG | + | chr4.1:29225767-29225786 | MS.gene52139:intron | 30.0% |
!!! | TTGAACTTTTTGCCATTTTC+AGG | + | chr4.1:29225766-29225785 | MS.gene52139:intron | 30.0% |
AAAGAAGCAAAAGGTAGAAG+AGG | + | chr4.1:29222013-29222032 | MS.gene52139:CDS | 35.0% | |
AAAGCTGTTCCTTCCAAAAA+TGG | + | chr4.1:29223073-29223092 | MS.gene52139:CDS | 35.0% | |
AAGCTGTTCCTTCCAAAAAT+GGG | + | chr4.1:29223074-29223093 | MS.gene52139:CDS | 35.0% | |
AGAAGATTCAGATGAAGATG+AGG | + | chr4.1:29222917-29222936 | MS.gene52139:intron | 35.0% | |
AGTCTCAAACAGTATTTGTC+AGG | + | chr4.1:29224893-29224912 | MS.gene52139:CDS | 35.0% | |
ATCGAAAACACCTCAGAAAA+AGG | + | chr4.1:29224003-29224022 | MS.gene52139:CDS | 35.0% | |
ATCTTCATCGGATTCTTCAT+CGG | - | chr4.1:29223360-29223379 | None:intergenic | 35.0% | |
ATCTTCTGACGAAGAAGATA+AGG | + | chr4.1:29223144-29223163 | MS.gene52139:CDS | 35.0% | |
ATGCCAATAGCTTACACTTT+GGG | - | chr4.1:29224555-29224574 | None:intergenic | 35.0% | |
CTATGCTACCTTTCTACTAA+AGG | + | chr4.1:29223441-29223460 | MS.gene52139:intron | 35.0% | |
CTTCATGAAAGTGAACTTGA+TGG | + | chr4.1:29225298-29225317 | MS.gene52139:CDS | 35.0% | |
CTTCTAACCCTTTAGTAGAA+AGG | - | chr4.1:29223452-29223471 | None:intergenic | 35.0% | |
GAAAATTTCTTCCAAGGTTG+CGG | + | chr4.1:29224443-29224462 | MS.gene52139:CDS | 35.0% | |
GATTCCAGAAACAAATCAGT+TGG | - | chr4.1:29224609-29224628 | None:intergenic | 35.0% | |
GCCTGTATCAAAGTCAAAAT+AGG | - | chr4.1:29221955-29221974 | None:intergenic | 35.0% | |
GCTCAAAGACACTATTTGTT+GGG | + | chr4.1:29224305-29224324 | MS.gene52139:CDS | 35.0% | |
GTCTCAAACAGTATTTGTCA+GGG | + | chr4.1:29224894-29224913 | MS.gene52139:CDS | 35.0% | |
TAATAGGCACTTGAGATGAA+TGG | + | chr4.1:29224668-29224687 | MS.gene52139:intron | 35.0% | |
TCTCAAACAGTATTTGTCAG+GGG | + | chr4.1:29224895-29224914 | MS.gene52139:CDS | 35.0% | |
TGAATCTTCTGATGAAGACA+AGG | + | chr4.1:29222667-29222686 | MS.gene52139:CDS | 35.0% | |
TGACGAAGAAGATAAGGTAT+TGG | + | chr4.1:29223150-29223169 | MS.gene52139:intron | 35.0% | |
TGATGAAGATAAGAAACCTG+TGG | + | chr4.1:29223619-29223638 | MS.gene52139:CDS | 35.0% | |
TTCACTAACCTCTTTCTTAG+AGG | - | chr4.1:29223645-29223664 | None:intergenic | 35.0% | |
TTCTTCATCGGATTCTTCAT+CGG | - | chr4.1:29223348-29223367 | None:intergenic | 35.0% | |
TTGAATCTGGTTATTCCAAG+GGG | + | chr4.1:29225144-29225163 | MS.gene52139:CDS | 35.0% | |
! | GAAGTATCATCTTTCTTTGC+GGG | - | chr4.1:29222623-29222642 | None:intergenic | 35.0% |
! | GATGGAGTATTTAAAGGCTT+TGG | + | chr4.1:29224500-29224519 | MS.gene52139:CDS | 35.0% |
! | GCAGCAAGTAAAGTTTTCAA+TGG | - | chr4.1:29225182-29225201 | None:intergenic | 35.0% |
! | TATATGCTGACCTTTTTCTG+AGG | - | chr4.1:29224016-29224035 | None:intergenic | 35.0% |
! | TCAGAAGAATCATCTTTTGC+AGG | - | chr4.1:29222885-29222904 | None:intergenic | 35.0% |
! | TGACAAATACTGTTTGAGAC+TGG | - | chr4.1:29224894-29224913 | None:intergenic | 35.0% |
! | TTACTTCATGGATTGTTCAC+AGG | + | chr4.1:29225224-29225243 | MS.gene52139:intron | 35.0% |
!! | ACTCACATTTTTAGAGGCTT+TGG | - | chr4.1:29223297-29223316 | None:intergenic | 35.0% |
!! | ACTTCCAACTGATTTGTTTC+TGG | + | chr4.1:29224602-29224621 | MS.gene52139:intron | 35.0% |
!! | AGCATTTTGGTAGTACTTGT+GGG | + | chr4.1:29225090-29225109 | MS.gene52139:CDS | 35.0% |
!! | AGGGGTTTTGATAAGAATCT+TGG | + | chr4.1:29224913-29224932 | MS.gene52139:CDS | 35.0% |
!! | GCTAAATTGATGGAGCATTT+TGG | + | chr4.1:29225077-29225096 | MS.gene52139:CDS | 35.0% |
!! | GGTGATTTTATTTCCCCTTT+CGG | + | chr4.1:29224945-29224964 | MS.gene52139:intron | 35.0% |
!!! | GCCTATTTTGACTTTGATAC+AGG | + | chr4.1:29221951-29221970 | MS.gene52139:intron | 35.0% |
!!! | TCACATTCCCATTTTTAGCT+GGG | - | chr4.1:29222284-29222303 | None:intergenic | 35.0% |
!!! | TTCACATTCCCATTTTTAGC+TGG | - | chr4.1:29222285-29222304 | None:intergenic | 35.0% |
!!! | TTTTTCTGAGGTGTTTTCGA+TGG | - | chr4.1:29224004-29224023 | None:intergenic | 35.0% |
AAACCAAGCTTTGCTTCTGA+AGG | + | chr4.1:29225538-29225557 | MS.gene52139:CDS | 40.0% | |
AAATAGTGTCTTTGAGCCAC+TGG | - | chr4.1:29224302-29224321 | None:intergenic | 40.0% | |
AAGAAGACCCCAGCTAAAAA+TGG | + | chr4.1:29222273-29222292 | MS.gene52139:CDS | 40.0% | |
ACCTTGACTATCTCTAGGTT+TGG | - | chr4.1:29225347-29225366 | None:intergenic | 40.0% | |
AGAACTTGCAGCTTTCTTTG+TGG | - | chr4.1:29223324-29223343 | None:intergenic | 40.0% | |
AGAAGACCCCAGCTAAAAAT+GGG | + | chr4.1:29222274-29222293 | MS.gene52139:CDS | 40.0% | |
AGTGAGTGCAAAGAAGCAAA+AGG | + | chr4.1:29222004-29222023 | MS.gene52139:CDS | 40.0% | |
ATACCTTCAGAAGCAAAGCT+TGG | - | chr4.1:29225544-29225563 | None:intergenic | 40.0% | |
CACTTTCACTTCTTCCTCAT+CGG | - | chr4.1:29222364-29222383 | None:intergenic | 40.0% | |
CTACAAATGTAGTAGCACGT+AGG | + | chr4.1:29223721-29223740 | MS.gene52139:intron | 40.0% | |
GAACTTGCAGCTTTCTTTGT+GGG | - | chr4.1:29223323-29223342 | None:intergenic | 40.0% | |
GATGCCAATAGCTTACACTT+TGG | - | chr4.1:29224556-29224575 | None:intergenic | 40.0% | |
GCGGATTTCTTGCTTGATTT+AGG | - | chr4.1:29221132-29221151 | None:intergenic | 40.0% | |
GGCTCAAAGACACTATTTGT+TGG | + | chr4.1:29224304-29224323 | MS.gene52139:CDS | 40.0% | |
TAACTTATGCCCCACTGTAT+AGG | + | chr4.1:29223505-29223524 | MS.gene52139:intron | 40.0% | |
TAAGAATCTTGGAGAGGAAG+AGG | + | chr4.1:29224924-29224943 | MS.gene52139:CDS | 40.0% | |
TCGAAGCAGAAAAGTAAAGG+TGG | - | chr4.1:29221310-29221329 | None:intergenic | 40.0% | |
TGTTCACAGGTTTGCATACA+TGG | + | chr4.1:29225237-29225256 | MS.gene52139:intron | 40.0% | |
TGTTGATGTACGTCTTGCTT+CGG | + | chr4.1:29224472-29224491 | MS.gene52139:CDS | 40.0% | |
TTCACTGGAGAAACAACAAC+AGG | - | chr4.1:29221270-29221289 | None:intergenic | 40.0% | |
TTGACTTTGATACAGGCAAG+AGG | + | chr4.1:29221958-29221977 | MS.gene52139:intron | 40.0% | |
! | ACTTTACTTGCTGCACATCA+CGG | + | chr4.1:29225188-29225207 | MS.gene52139:intron | 40.0% |
! | CTGTTGATTGGTCAAACTGA+TGG | + | chr4.1:29221709-29221728 | MS.gene52139:intron | 40.0% |
! | GATGGGGATGGAGTATTTAA+AGG | + | chr4.1:29224494-29224513 | MS.gene52139:CDS | 40.0% |
! | GTGGTCTTTTTCCCTGAAAA+TGG | - | chr4.1:29225781-29225800 | None:intergenic | 40.0% |
! | TGATGGATATCAGTTGTCAG+TGG | + | chr4.1:29225315-29225334 | MS.gene52139:CDS | 40.0% |
!! | GAGCATTTTGGTAGTACTTG+TGG | + | chr4.1:29225089-29225108 | MS.gene52139:CDS | 40.0% |
!! | GATACACTCCCATTTTTGGA+AGG | - | chr4.1:29223085-29223104 | None:intergenic | 40.0% |
!!! | CACATTCCCATTTTTAGCTG+GGG | - | chr4.1:29222283-29222302 | None:intergenic | 40.0% |
!!! | GGGTTTTAGCTTTGAAGTGT+TGG | + | chr4.1:29221384-29221403 | MS.gene52139:intron | 40.0% |
AGGCTTTGCATCCTATACAG+TGG | - | chr4.1:29223519-29223538 | None:intergenic | 45.0% | |
AGTAACTACTCAGCCCAAAG+TGG | + | chr4.1:29224859-29224878 | MS.gene52139:intron | 45.0% | |
ATCATTGTGCATGAGCCGAA+AGG | - | chr4.1:29224963-29224982 | None:intergenic | 45.0% | |
ATGTACGTCTTGCTTCGGAT+GGG | + | chr4.1:29224477-29224496 | MS.gene52139:CDS | 45.0% | |
CAGCCCAAAGTGTAAGCTAT+TGG | + | chr4.1:29224549-29224568 | MS.gene52139:intron | 45.0% | |
CCAGAACCTTGACTATCTCT+AGG | - | chr4.1:29225352-29225371 | None:intergenic | 45.0% | |
CCAGTGAAGTCTGGAAAGAA+AGG | + | chr4.1:29221282-29221301 | MS.gene52139:CDS | 45.0% | |
CCTAGAGATAGTCAAGGTTC+TGG | + | chr4.1:29225349-29225368 | MS.gene52139:CDS | 45.0% | |
CCTTTCTTTCCAGACTTCAC+TGG | - | chr4.1:29221285-29221304 | None:intergenic | 45.0% | |
GCCAAACCTAGAGATAGTCA+AGG | + | chr4.1:29225343-29225362 | MS.gene52139:CDS | 45.0% | |
GCTTTGCATCCTATACAGTG+GGG | - | chr4.1:29223517-29223536 | None:intergenic | 45.0% | |
GGCTTTGCATCCTATACAGT+GGG | - | chr4.1:29223518-29223537 | None:intergenic | 45.0% | |
GTTGAAACAGATCAAGGACG+TGG | + | chr4.1:29224123-29224142 | MS.gene52139:intron | 45.0% | |
GTTGAAGGTAGTCAAGAAGG+AGG | + | chr4.1:29222055-29222074 | MS.gene52139:CDS | 45.0% | |
TCATTGTGCATGAGCCGAAA+GGG | - | chr4.1:29224962-29224981 | None:intergenic | 45.0% | |
TCTCCCGAGCTAAATCAAGT+CGG | - | chr4.1:29224718-29224737 | None:intergenic | 45.0% | |
TGGGAATATGCGTCAATGAC+AGG | + | chr4.1:29223913-29223932 | MS.gene52139:intron | 45.0% | |
TGTTGAGTTTGCAACTGCAG+AGG | + | chr4.1:29224526-29224545 | MS.gene52139:CDS | 45.0% | |
TTAGCTGGGGTCTTCTTTGA+AGG | - | chr4.1:29222270-29222289 | None:intergenic | 45.0% | |
! | ACTTGATTTAGCTCGGGAGA+GGG | + | chr4.1:29224718-29224737 | MS.gene52139:CDS | 45.0% |
! | AGAGATAGTCAAGGTTCTGG+TGG | + | chr4.1:29225352-29225371 | MS.gene52139:CDS | 45.0% |
! | AGAGTCAGATTCCTCTGAAG+TGG | - | chr4.1:29222325-29222344 | None:intergenic | 45.0% |
! | AGATGGAACAGCTTTAGCTG+CGG | - | chr4.1:29222585-29222604 | None:intergenic | 45.0% |
! | ATGGTTGATGCTGGCAAATC+TGG | + | chr4.1:29224148-29224167 | MS.gene52139:CDS | 45.0% |
! | CTCTCCGACTTGATTTAGCT+CGG | + | chr4.1:29224711-29224730 | MS.gene52139:CDS | 45.0% |
! | TACCTTCAACGCCTTTTGCT+TGG | - | chr4.1:29222045-29222064 | None:intergenic | 45.0% |
! | TCTCCGACTTGATTTAGCTC+GGG | + | chr4.1:29224712-29224731 | MS.gene52139:CDS | 45.0% |
! | TGCGGATACACTCCCATTTT+TGG | - | chr4.1:29223089-29223108 | None:intergenic | 45.0% |
! | TGGTTGATGCTGGCAAATCT+GGG | + | chr4.1:29224149-29224168 | MS.gene52139:CDS | 45.0% |
! | TTTGAGCCACTGGTCTCATT+TGG | - | chr4.1:29224292-29224311 | None:intergenic | 45.0% |
! | TTTGGTGTAGCTGGGGTATT+AGG | - | chr4.1:29224274-29224293 | None:intergenic | 45.0% |
!! | GGGTGCACTCACATTTTTAG+AGG | - | chr4.1:29223303-29223322 | None:intergenic | 45.0% |
!! | GGTGCACTCCCATTTTTAGA+TGG | - | chr4.1:29222602-29222621 | None:intergenic | 45.0% |
!! | GTTGTTTCTCCAGTGAAGTC+TGG | + | chr4.1:29221273-29221292 | MS.gene52139:CDS | 45.0% |
!! | TGGTCTCATTTGGTGTAGCT+GGG | - | chr4.1:29224282-29224301 | None:intergenic | 45.0% |
!! | TTTTTAGAGGCTTTGGCTGC+AGG | - | chr4.1:29223290-29223309 | None:intergenic | 45.0% |
!!! | CTCTTTTTTGCAACAGCAGC+AGG | - | chr4.1:29223551-29223570 | None:intergenic | 45.0% |
AACGTTTCACGTCGAAGGAC+AGG | - | chr4.1:29224333-29224352 | None:intergenic | 50.0% | |
AACTACTCAGCCCAAAGTGG+TGG | + | chr4.1:29224862-29224881 | MS.gene52139:CDS | 50.0% | |
ACAGATCAAGGACGTGGAGA+TGG | + | chr4.1:29224129-29224148 | MS.gene52139:intron | 50.0% | |
ACCTCTTTCTTAGAGGCCAC+AGG | - | chr4.1:29223638-29223657 | None:intergenic | 50.0% | |
AGAGGTTGTCGCCAAGCAAA+AGG | + | chr4.1:29222031-29222050 | MS.gene52139:CDS | 50.0% | |
CACTTCTTCCTCATCGGAAG+AGG | - | chr4.1:29222358-29222377 | None:intergenic | 50.0% | |
CATTGTGCATGAGCCGAAAG+GGG | - | chr4.1:29224961-29224980 | None:intergenic | 50.0% | |
CTTTGATACAGGCAAGAGGC+AGG | + | chr4.1:29221962-29221981 | MS.gene52139:intron | 50.0% | |
GAAGGAGGAAAGTAGTTCCG+AGG | + | chr4.1:29222070-29222089 | MS.gene52139:CDS | 50.0% | |
GAGCACGATGCAACAGTTCT+TGG | - | chr4.1:29224694-29224713 | None:intergenic | 50.0% | |
GATGTACGTCTTGCTTCGGA+TGG | + | chr4.1:29224476-29224495 | MS.gene52139:CDS | 50.0% | |
GCTACACCAAATGAGACCAG+TGG | + | chr4.1:29224283-29224302 | MS.gene52139:CDS | 50.0% | |
GGATTCCTCAGAGGATTCCT+CGG | - | chr4.1:29222090-29222109 | None:intergenic | 50.0% | |
GTACTTGTGGGCAACCTACA+AGG | + | chr4.1:29225102-29225121 | MS.gene52139:CDS | 50.0% | |
GTCAGAACGTTTCACGTCGA+AGG | - | chr4.1:29224338-29224357 | None:intergenic | 50.0% | |
TAGTTCCGAGGAATCCTCTG+AGG | + | chr4.1:29222082-29222101 | MS.gene52139:CDS | 50.0% | |
TGTACGTCTTGCTTCGGATG+GGG | + | chr4.1:29224478-29224497 | MS.gene52139:CDS | 50.0% | |
TTTCTTCCAAGGTTGCGGAG+AGG | + | chr4.1:29224448-29224467 | MS.gene52139:CDS | 50.0% | |
TTTGGTGGAGGTGGAAGAAG+CGG | + | chr4.1:29225409-29225428 | MS.gene52139:CDS | 50.0% | |
! | ACCTGTGGCCTCTAAGAAAG+AGG | + | chr4.1:29223634-29223653 | MS.gene52139:CDS | 50.0% |
! | AGTCAAGGTTCTGGTGGTAG+AGG | + | chr4.1:29225358-29225377 | MS.gene52139:CDS | 50.0% |
! | CTTGATTTAGCTCGGGAGAG+GGG | + | chr4.1:29224719-29224738 | MS.gene52139:CDS | 50.0% |
! | GAAGGAACAGCTTTTGCTGC+AGG | - | chr4.1:29223067-29223086 | None:intergenic | 50.0% |
! | GACTTGATTTAGCTCGGGAG+AGG | + | chr4.1:29224717-29224736 | MS.gene52139:CDS | 50.0% |
! | GAGTGATTCGTCTGATGACG+AGG | + | chr4.1:29223670-29223689 | MS.gene52139:CDS | 50.0% |
! | GATGGAACAGCTTTAGCTGC+AGG | - | chr4.1:29222584-29222603 | None:intergenic | 50.0% |
! | GATGGAACAGCTTTAGCTGC+GGG | - | chr4.1:29222584-29222603 | None:intergenic | 50.0% |
! | GGCGTTGAAGGTAGTCAAGA+AGG | + | chr4.1:29222052-29222071 | MS.gene52139:CDS | 50.0% |
! | TGGCAAAGAAGCATACCCCT+TGG | - | chr4.1:29225162-29225181 | None:intergenic | 50.0% |
! | TTTGGTGGAAGGGATAGTGG+CGG | + | chr4.1:29225472-29225491 | MS.gene52139:CDS | 50.0% |
!! | AGGAGGTCGATTTGGTGGAA+GGG | + | chr4.1:29225462-29225481 | MS.gene52139:CDS | 50.0% |
!! | CGATTTGGTGGAAGGGATAG+TGG | + | chr4.1:29225469-29225488 | MS.gene52139:CDS | 50.0% |
!! | CTGGTCTCATTTGGTGTAGC+TGG | - | chr4.1:29224283-29224302 | None:intergenic | 50.0% |
!! | GATTCCTCTGAAGTGGTCTC+TGG | - | chr4.1:29222318-29222337 | None:intergenic | 50.0% |
!! | GGTCTCATTTGGTGTAGCTG+GGG | - | chr4.1:29224281-29224300 | None:intergenic | 50.0% |
ACAGCAGCAGGCTTAGACAC+AGG | - | chr4.1:29223539-29223558 | None:intergenic | 55.0% | |
CAACAACCTCTCCGCAACCT+TGG | - | chr4.1:29224457-29224476 | None:intergenic | 55.0% | |
CTCATCCTCGGATTCCTCAG+AGG | - | chr4.1:29222099-29222118 | None:intergenic | 55.0% | |
CTCCTCACTCTCGTCAGAGT+CGG | - | chr4.1:29223966-29223985 | None:intergenic | 55.0% | |
CTGGCCTCTTCCACCACTTT+GGG | - | chr4.1:29224875-29224894 | None:intergenic | 55.0% | |
GCAGGCTGAGGAAGAAGTCA+AGG | + | chr4.1:29221980-29221999 | MS.gene52139:CDS | 55.0% | |
GGAAGAGGAGGAGGTCGATT+TGG | + | chr4.1:29225454-29225473 | MS.gene52139:CDS | 55.0% | |
TGACAGCTCCTCTTCCGATG+AGG | + | chr4.1:29222347-29222366 | MS.gene52139:CDS | 55.0% | |
TTCCGACTCTGACGAGAGTG+AGG | + | chr4.1:29223961-29223980 | MS.gene52139:CDS | 55.0% | |
! | ACTGGCCTCTTCCACCACTT+TGG | - | chr4.1:29224876-29224895 | None:intergenic | 55.0% |
! | CAAGGTTCTGGTGGTAGAGG+TGG | + | chr4.1:29225361-29225380 | MS.gene52139:CDS | 55.0% |
! | CTCTGAGGAATCCGAGGATG+AGG | + | chr4.1:29222097-29222116 | MS.gene52139:CDS | 55.0% |
! | GACGTGGAGATGGTTGATGC+TGG | + | chr4.1:29224139-29224158 | MS.gene52139:CDS | 55.0% |
! | GGAAGAAGCGGTGGATTTGG+TGG | + | chr4.1:29225421-29225440 | MS.gene52139:CDS | 55.0% |
! | GGAATCCTCTGAGGAATCCG+AGG | + | chr4.1:29222091-29222110 | MS.gene52139:CDS | 55.0% |
! | GGAGCAGGAGCTTTTGCAAC+AGG | - | chr4.1:29222249-29222268 | None:intergenic | 55.0% |
! | GGGGTCTTCTTTGAAGGAGC+AGG | - | chr4.1:29222264-29222283 | None:intergenic | 55.0% |
! | GGTGGAAGAAGCGGTGGATT+TGG | + | chr4.1:29225418-29225437 | MS.gene52139:CDS | 55.0% |
! | TCAGCCCAAAGTGGTGGAAG+AGG | + | chr4.1:29224868-29224887 | MS.gene52139:CDS | 55.0% |
!! | AGAGGAGGAGGTCGATTTGG+TGG | + | chr4.1:29225457-29225476 | MS.gene52139:CDS | 55.0% |
!! | AGGAGTGGTGGTGGTCGATT+TGG | + | chr4.1:29225391-29225410 | MS.gene52139:CDS | 55.0% |
!! | AGTGGTGGTGGTCGATTTGG+TGG | + | chr4.1:29225394-29225413 | MS.gene52139:CDS | 55.0% |
!! | CGCCAAGCAAAAGGCGTTGA+AGG | + | chr4.1:29222040-29222059 | MS.gene52139:CDS | 55.0% |
!! | CTCTGAAGTGGTCTCTGGCT+GGG | - | chr4.1:29222313-29222332 | None:intergenic | 55.0% |
!! | GAAGCGGTGGATTTGGTGGT+AGG | + | chr4.1:29225425-29225444 | MS.gene52139:CDS | 55.0% |
!! | GAGGAGGTCGATTTGGTGGA+AGG | + | chr4.1:29225461-29225480 | MS.gene52139:CDS | 55.0% |
!! | GGATTTGGTGGTAGGAGTGG+TGG | + | chr4.1:29225433-29225452 | MS.gene52139:CDS | 55.0% |
!! | GGTGGATTTGGTGGTAGGAG+TGG | + | chr4.1:29225430-29225449 | MS.gene52139:CDS | 55.0% |
AGAGGTGGAGGTGGAAGGAG+TGG | + | chr4.1:29225376-29225395 | MS.gene52139:CDS | 60.0% | |
AGAGGTGGTCGAGGAGGAAG+AGG | + | chr4.1:29225496-29225515 | MS.gene52139:CDS | 60.0% | |
CCAGCCAGAGACCACTTCAG+AGG | + | chr4.1:29222311-29222330 | MS.gene52139:CDS | 60.0% | |
CGACTCTGACGAGAGTGAGG+AGG | + | chr4.1:29223964-29223983 | MS.gene52139:CDS | 60.0% | |
CGAGAGTGAGGAGGAGAGTG+AGG | + | chr4.1:29223973-29223992 | MS.gene52139:CDS | 60.0% | |
CGTCTTGCTTCGGATGGGGA+TGG | + | chr4.1:29224482-29224501 | MS.gene52139:CDS | 60.0% | |
GGCTGCAGGTTTCTGAGCCA+AGG | - | chr4.1:29223276-29223295 | None:intergenic | 60.0% | |
GTGGTAGAGGTGGAGGTGGA+AGG | + | chr4.1:29225371-29225390 | MS.gene52139:CDS | 60.0% | |
TACAGGCAAGAGGCAGGCTG+AGG | + | chr4.1:29221968-29221987 | MS.gene52139:intron | 60.0% | |
TCTGGTGGTAGAGGTGGAGG+TGG | + | chr4.1:29225367-29225386 | MS.gene52139:CDS | 60.0% | |
! | AGGAGTGGTGGAAGAGGAGG+AGG | + | chr4.1:29225445-29225464 | MS.gene52139:CDS | 60.0% |
! | AGGGATAGTGGCGGTAGAGG+TGG | + | chr4.1:29225481-29225500 | MS.gene52139:CDS | 60.0% |
! | GGAAGGGATAGTGGCGGTAG+AGG | + | chr4.1:29225478-29225497 | MS.gene52139:CDS | 60.0% |
! | GGTAGGAGTGGTGGAAGAGG+AGG | + | chr4.1:29225442-29225461 | MS.gene52139:CDS | 60.0% |
! | GGTGGTAGGAGTGGTGGAAG+AGG | + | chr4.1:29225439-29225458 | MS.gene52139:CDS | 60.0% |
! | GGTTCTGGTGGTAGAGGTGG+AGG | + | chr4.1:29225364-29225383 | MS.gene52139:CDS | 60.0% |
!! | CCTCTGAAGTGGTCTCTGGC+TGG | - | chr4.1:29222314-29222333 | None:intergenic | 60.0% |
!! | GGTGGTCGATTTGGTGGAGG+TGG | + | chr4.1:29225400-29225419 | MS.gene52139:CDS | 60.0% |
!! | GGTGGTGGTCGATTTGGTGG+AGG | + | chr4.1:29225397-29225416 | MS.gene52139:CDS | 60.0% |
AGTGGCGGTAGAGGTGGTCG+AGG | + | chr4.1:29225487-29225506 | MS.gene52139:CDS | 65.0% | |
CGAGGAGGAAGAGGTGGTCG+TGG | + | chr4.1:29225505-29225524 | MS.gene52139:CDS | 65.0% | |
GGAGGAAGAGGTGGTCGTGG+AGG | + | chr4.1:29225508-29225527 | MS.gene52139:CDS | 65.0% | |
GGAGGTGGAAGGAGTGGTGG+TGG | + | chr4.1:29225382-29225401 | MS.gene52139:CDS | 65.0% | |
GGTGGAGGTGGAAGAAGCGG+TGG | + | chr4.1:29225412-29225431 | MS.gene52139:CDS | 65.0% | |
GGTGGAGGTGGAAGGAGTGG+TGG | + | chr4.1:29225379-29225398 | MS.gene52139:CDS | 65.0% | |
GGTGGTCGAGGAGGAAGAGG+TGG | + | chr4.1:29225499-29225518 | MS.gene52139:CDS | 65.0% | |
GGCGGTAGAGGTGGTCGAGG+AGG | + | chr4.1:29225490-29225509 | MS.gene52139:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 29221126 | 29225816 | 29221126 | ID=MS.gene52139 |
chr4.1 | mRNA | 29221126 | 29225816 | 29221126 | ID=MS.gene52139.t1;Parent=MS.gene52139 |
chr4.1 | exon | 29221126 | 29221158 | 29221126 | ID=MS.gene52139.t1.exon1;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29221126 | 29221158 | 29221126 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29221255 | 29221303 | 29221255 | ID=MS.gene52139.t1.exon2;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29221255 | 29221303 | 29221255 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29221973 | 29222118 | 29221973 | ID=MS.gene52139.t1.exon3;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29221973 | 29222118 | 29221973 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29222243 | 29222374 | 29222243 | ID=MS.gene52139.t1.exon4;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29222243 | 29222374 | 29222243 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29222578 | 29222688 | 29222578 | ID=MS.gene52139.t1.exon5;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29222578 | 29222688 | 29222578 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29223061 | 29223165 | 29223061 | ID=MS.gene52139.t1.exon6;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29223061 | 29223165 | 29223061 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29223284 | 29223382 | 29223284 | ID=MS.gene52139.t1.exon7;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29223284 | 29223382 | 29223284 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29223527 | 29223691 | 29223527 | ID=MS.gene52139.t1.exon8;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29223527 | 29223691 | 29223527 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29223935 | 29224024 | 29223935 | ID=MS.gene52139.t1.exon9;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29223935 | 29224024 | 29223935 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29224133 | 29224180 | 29224133 | ID=MS.gene52139.t1.exon10;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29224133 | 29224180 | 29224133 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29224271 | 29224359 | 29224271 | ID=MS.gene52139.t1.exon11;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29224271 | 29224359 | 29224271 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29224442 | 29224559 | 29224442 | ID=MS.gene52139.t1.exon12;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29224442 | 29224559 | 29224442 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29224674 | 29224765 | 29224674 | ID=MS.gene52139.t1.exon13;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29224674 | 29224765 | 29224674 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29224861 | 29224945 | 29224861 | ID=MS.gene52139.t1.exon14;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29224861 | 29224945 | 29224861 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29225071 | 29225165 | 29225071 | ID=MS.gene52139.t1.exon15;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29225071 | 29225165 | 29225071 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29225246 | 29225559 | 29225246 | ID=MS.gene52139.t1.exon16;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29225246 | 29225559 | 29225246 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
chr4.1 | exon | 29225788 | 29225816 | 29225788 | ID=MS.gene52139.t1.exon17;Parent=MS.gene52139.t1 |
chr4.1 | CDS | 29225788 | 29225816 | 29225788 | ID=cds.MS.gene52139.t1;Parent=MS.gene52139.t1 |
Gene Sequence |
Protein sequence |