AlfalfaGEDB | MS.gene040581

M. sativa cultivar XinJiangDaYe / MS.gene040581

KEGG: K03242
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00009.30 PF03144.28 PF09173.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040581.t1	XP_024632030.1	99.1	466	4	0	1	466	1	466	7.80E-262	912.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040581.t1	Q24208	74.0	454	117	1	4	457	12	464	3.9e-193	675.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040581.t1	A0A072VJP0	99.1	466	4	0	1	466	1	466	5.6e-262	912.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene040581	MS.gene008447	PPI
MS.gene040581	MS.gene033096	PPI
MS.gene040581	MS.gene90945	PPI
MS.gene040581	MS.gene45417	PPI
MS.gene040581	MS.gene031932	PPI
MS.gene040581	MS.gene67431	PPI
MS.gene040581	MS.gene057738	PPI
MS.gene040581	MS.gene040115	PPI
MS.gene040581	MS.gene05134	PPI
MS.gene040581	MS.gene018045	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040581.t1	MTR_2g069440	99.142	466	4	0	1	466	1	466	0.0	949
MS.gene040581.t1	MTR_2g069440	99.142	466	4	0	1	466	178	643	0.0	948
MS.gene040581.t1	MTR_2g075870	93.562	466	30	0	1	466	1	466	0.0	907
MS.gene040581.t1	MTR_2g021300	25.068	367	197	15	33	377	51	361	1.93e-15	78.6
MS.gene040581.t1	MTR_7g094460	26.207	290	125	11	33	288	64	298	1.05e-14	76.3
MS.gene040581.t1	MTR_3g076660	26.335	281	152	10	29	288	89	335	2.83e-12	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040581.t1	AT1G04170	90.323	465	44	1	1	464	1	465	0.0	878
MS.gene040581.t1	AT1G04170	90.323	465	44	1	1	464	1	465	0.0	878
MS.gene040581.t1	AT4G18330	81.128	461	87	0	4	464	11	471	0.0	783
MS.gene040581.t1	AT2G18720	75.810	463	110	1	4	466	10	470	0.0	742
MS.gene040581.t1	AT2G18720	75.810	463	110	1	4	466	10	470	0.0	742
MS.gene040581.t1	AT2G18720	73.404	376	100	0	91	466	4	379	0.0	587
MS.gene040581.t1	AT4G18330	82.847	274	47	0	4	277	11	284	6.29e-170	479
MS.gene040581.t1	AT4G20360	25.067	375	201	14	29	377	76	396	9.09e-15	76.6
MS.gene040581.t1	AT4G20360	25.067	375	201	14	29	377	76	396	9.09e-15	76.6
MS.gene040581.t1	AT4G02930	25.874	286	131	10	33	288	68	302	2.09e-14	75.5

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Find 118 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCCCAATCCCTGAA+CGG	0.642212	2.1:+29077264	MS.gene040581:CDS
AACATAGGATCAATGTCAAC+AGG	0.470116	2.1:+29078725	MS.gene040581:CDS
AACCCAGGTACATCACACAT+AGG	0.706120	2.1:-29076312	None:intergenic
AACGGAGCAGCAATTATGGA+TGG	0.578784	2.1:+29076893	MS.gene040581:CDS
AAGAAGCAGTCAAAATGGCT+CGG	0.627647	2.1:+29075166	None:intergenic
AAGCAGTCAAAATGGCTCGG+AGG	0.693793	2.1:+29075169	None:intergenic
AATACCCACTTGTAGGACAT+AGG	0.621972	2.1:-29076185	None:intergenic
AATATTGATAGTAGCCTGAC+GGG	0.558072	2.1:-29075262	None:intergenic
AATGTCAACAGGTGCCAGAG+TGG	0.677771	2.1:+29078736	MS.gene040581:CDS
ACAAAAGGTTCCGAGAGACA+AGG	0.646997	2.1:+29078662	MS.gene040581:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACAACAGTGAAAACA+AGG	+	chr2.1:29077579-29077598	MS.gene040581:intron	30.0%
AAAGACAACAGTGAAAACAA+GGG	+	chr2.1:29077580-29077599	MS.gene040581:intron	30.0%
AAATTAAACATATACCCCCA+AGG	+	chr2.1:29076605-29076624	MS.gene040581:intron	30.0%
AACACTCTTGACACTAAATT+AGG	-	chr2.1:29078511-29078530	None:intergenic	30.0%
AAGATTCTAGTATGATGTAG+GGG	+	chr2.1:29076441-29076460	MS.gene040581:intron	30.0%
ACACTCTTGACACTAAATTA+GGG	-	chr2.1:29078510-29078529	None:intergenic	30.0%
ACAGTCTGTAAAACATTCAT+GGG	-	chr2.1:29076071-29076090	None:intergenic	30.0%
AGACTTGATTCAAGAAAATG+TGG	+	chr2.1:29077030-29077049	MS.gene040581:CDS	30.0%
AGCAAATAGTGAAACTATTC+TGG	-	chr2.1:29078188-29078207	None:intergenic	30.0%
ATAGTTGTTAAAGATGAGAG+TGG	+	chr2.1:29078136-29078155	MS.gene040581:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	29075180	29078931	29075180	ID=MS.gene040581
chr2.1	mRNA	29075180	29078931	29075180	ID=MS.gene040581.t1;Parent=MS.gene040581
chr2.1	exon	29075180	29075285	29075180	ID=MS.gene040581.t1.exon1;Parent=MS.gene040581.t1
chr2.1	CDS	29075180	29075285	29075180	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1	exon	29075422	29075483	29075422	ID=MS.gene040581.t1.exon2;Parent=MS.gene040581.t1
chr2.1	CDS	29075422	29075483	29075422	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1	exon	29076086	29076198	29076086	ID=MS.gene040581.t1.exon3;Parent=MS.gene040581.t1
chr2.1	CDS	29076086	29076198	29076086	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1	exon	29076284	29076386	29076284	ID=MS.gene040581.t1.exon4;Parent=MS.gene040581.t1
chr2.1	CDS	29076284	29076386	29076284	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1	exon	29076863	29077090	29076863	ID=MS.gene040581.t1.exon5;Parent=MS.gene040581.t1
chr2.1	CDS	29076863	29077090	29076863	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1	exon	29077179	29077397	29077179	ID=MS.gene040581.t1.exon6;Parent=MS.gene040581.t1
chr2.1	CDS	29077179	29077397	29077179	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1	exon	29078094	29078354	29078094	ID=MS.gene040581.t1.exon7;Parent=MS.gene040581.t1
chr2.1	CDS	29078094	29078354	29078094	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1	exon	29078623	29078931	29078623	ID=MS.gene040581.t1.exon8;Parent=MS.gene040581.t1
chr2.1	CDS	29078623	29078931	29078623	ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1

Gene Sequence

>MS.gene040581

ATGGCTCGGAGGGGGTTGATGGAACAAGACCTGAGTACGTTGGATGTCAACAAATTGCATCCGCTGTCTCCTGAAGTCATATCCCGTCAGGCTACTATCAATATTGGTAATATATATTTCAATATTTTTATAGGAACATGTTCAAATTTGCTGCAATTACATAACTAGAAATTCAAAAAAAGTTGTGTGCATTTTCGTCAATGGCTGTTGATGCTGATCGGTAATGAAATTTATCTTGGCAGGTACCATAGGTCATGTGGCACATGGAAAGTCAACGGTTGTGAAAGCAATATCAGGTGTTCAGGTATGTCCTTGTATCAAGTCATTCTCTACTTTTTTGGGGGTGTTTGGCTAAGGATAGCGGTGTTTAACTGTACATTATAATCTGTAAATGTGTAATTTGTGGTATATGGTATATGGAAATATCTAAATGATGGATCTATTTACACCAAGGTGAATTGTTTCAAACAGAAAGAAAGTATATAGCATTTAATCATTGTCATAACTCATCGCCTACAATTTATAATTTTCGAAATCCAAGTAGTGTTGGCATTGCCTTGAATTTATATTTTTCTCAATCCAATTACTAAGCGGGTACATGAAATTTGTGAAATCTTAGTTGTCATAAAATCATGACGTGTGCTTGTGCCTTGTTTCAATATATGAATTTTAGTGTGTCGTAGATACGCTGTGTAGTTAGCCGTCTCTCCAAAAATTGGTTCCTAGTGGTTACATAGTTGATTGATAATATTTAGATCAATTGAATTTTCTACTTTTTTTTTGCATTTTTAGTTTTGATAAAGGATTATAGATAACCATGATATATGTATTTTAGTTCATCTTCCTTGAGCTTTGATAATGTATAGTTAAACTGTTGACCTATGTTCTCCCATGAATGTTTTACAGACTGTGCGATTTAAAAATGAGTTGGAACGTAACATTACAATCAAGCTCGGTTATGCGAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATGTCCTACAAGTGGGTATTATTTTAGATTTGTCATTTTGGTATTAGGTCATTCATCTTTTGGTAACGTGATCAATTTTTTTCCCCCTTCCTGTAGGGCCTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGATGTACCTGGGTTTGAAAATTCCAAGATGAAATTGCTGAGACATGTTTCTTTTGTTGATTGCCCGGTAAGGTCCTGAACCATCATTTGTTATATAGGGTTGTTTTAGGCATAATTTCATAAGATTCTAGTATGATGTAGGGGGATATACTTTCATATTCTTGCACAATTGGTTTTATTTTACATTGGTTGCCCTCGTAATTGTTTGCTCTCCTTATCATATTATCTCTCAATTCTTTAATCCCTGGAAGATATGTGTATTTTAGTCCATGTATATGTACTATTAAATTAAACATATACCCCCAAGGCCTACTATGTAAGCCAATGCTTTCCCTCACCGAAGTTAATTTTTTTATGCAATTAAAGTGGTTTGCATTCAATGGTACGGAGTTAAAAGAATTATGGTGCTTTTTCGTATGGTGTGGGGTTTTTCATATAATGGGTATCATTTTTTGCCATCTATGCTATATTATTGAATACTTCTTTAGCTATTATTTTTTTTTTACATCTGTGATATTTGTTTTACTGTTCCAATTTCTGTAGGGACATGATATTCTCATGGCTACTATGCTTAACGGAGCAGCAATTATGGATGGAGCTTTGCTACTCATTGCAGCTAATGAAAGTTGCCCTCAACCACAAACTTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAACACATAATAATCCTTCAGAACAAGGTAGACTTGATTCAAGAAAATGTGGCTATCAACCAGCATGAAGCAATTCAGAAGTTTATACAAGTAAGTTTTCTATGAGGAGGTATAATTATACAAGTGAATCCTTTTGAACAACATAAATGATACTCCCCTTTTTTTGGTGTTTTCCCAGGGCACTGTTGCTGATAGTGCACCAGTAGTACCTATTTCAGCACAATTGAAGTATAATATTGATGTTGTGTGTGAGTACATCGTGAAAAAGATCCCAATCCCTGAACGGAACTTCATTTCTCCACCTAATATGATAGTAATTCGGTCATTTGATGTCAATAAACCTGGTTATGAAGTTGATGAAATAAAAGGAGGCGTAGCTGGTGGGAGTATTCTGAGGGTAAGTCTTTCTTTCTTTGGTCAATATGCCAAAAAGCATGTTTAATTTGCACTGACCTGACCTGCAGATGTTAGGTTCTGTGGTTTGATTGAACAATTTTCCATTTGCTGTTACCGTTTTTAATTGCAAGACTGCCTCGTTGTTTTCATTTTGTATCTTGTTTTCTGTACAAATATTTGAAAAAAGACAACAGTGAAAACAAGGGGAAGCTTTTGCAATTTAAATGAAAAGTGGAAATGAAAATATATATTTTCTCAAACCAAACAGGCTCTTAGCATTTCCAATTCTATTGCTGTTTGGAATGATTTTTGCCTTTACCAATGCCTTGATTTATAACATTTATTCTAGACTTTCAAAGTGTTGTGCAAATAATGTGAAGAACGTGCAATATGATACATGGATGCTCAATAAGTGAGAAAAAATGCCTTGTAATTTTTTACATCTTTCTTTCTTCCATAAAACCTTATGCATCCAAATTTTAGAATAACTTGATAGAAGGCTCCATATGCCATTCTATTTCCAAACAAGAAAATGGGACTTAACTCTGATGTTTTTTGTCTAAATCAATTGAATATGTTATGATCAATTTCCATTTCCAATTGGCTGAGACCATGTACCCGTTGATCATGAGCCATGTTTGGGGTTAGACATTTGACACATTCTTTTTAAGCACATCGTACAATTTATTATTTGCAGGGTGTTTTAAAGGTCAACCAATTCATTGAAGTTCGACCTGGAATAGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCGATCTACTCCAGAATAGTTTCACTATTTGCTGAACAAAATGAGCTTCAATTTGCCGTTCCTGGAGGCCTTATAGGTGTTGGAACCACAATGGATCCCACTTTGACACGTGCTGACAGGTTGGTAGGGCAAGTTCTTGGAGAGGTTGGATCACTGCCTGATGTTTTTGTGGAACTTGAGGTAAGTGACTACACCTACTTGTCTCTTGCAGTCTCGCTTGGTTTATCAATTCATAAGACAAATCAATCAGGATAAAGATTAACATGTCCATTTCTCTGAAGTCTTTAGATAATTTACACTTGGTACTAATTACAAATGGAGAGGATCTTTACCCCTAATTTAGTGTCAAGAGTGTTGATCTTTTTTCTGTTATGGCACTTAGTTCCCCCCTATTGTGCTGGAAAGGTATTTTTATTTTTTTTAATGAACTATGCACATGGTCTTGCAGGTAAACTTTTTCTTGCTTCGACGGCTTCTTGGTGTCCGGACAAAAGGTTCCGAGAGACAAGGAAAGGTCTCAAAGCTGACGAAAACAGAAATGCTAATGTTGAACATAGGATCAATGTCAACAGGTGCCAGAGTGGTAGCTGTGAAGAATGACTTGGCAAAGTTGCAACTTACTTCCCCTGTGTGCACCAGCAAGGGAGAGAAGATTGCTCTAAGTAGACGTGTTGAGAAGCATTGGCGTCTCATCGGTTGGGGCCAAATCCAAGCTGGTATCACCCTTGATGTTCCTCCTGCCCCCCTTCTGAGTTGA

Protein sequence

>MS.gene040581.t1

MARRGLMEQDLSTLDVNKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMSYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADSAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLTKTEMLMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPLLS