AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040581

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040581.t1 MTR_2g069440 99.142 466 4 0 1 466 1 466 0.0 949
MS.gene040581.t1 MTR_2g069440 99.142 466 4 0 1 466 178 643 0.0 948
MS.gene040581.t1 MTR_2g075870 93.562 466 30 0 1 466 1 466 0.0 907
MS.gene040581.t1 MTR_2g021300 25.068 367 197 15 33 377 51 361 1.93e-15 78.6
MS.gene040581.t1 MTR_7g094460 26.207 290 125 11 33 288 64 298 1.05e-14 76.3
MS.gene040581.t1 MTR_3g076660 26.335 281 152 10 29 288 89 335 2.83e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040581.t1 AT1G04170 90.323 465 44 1 1 464 1 465 0.0 878
MS.gene040581.t1 AT1G04170 90.323 465 44 1 1 464 1 465 0.0 878
MS.gene040581.t1 AT4G18330 81.128 461 87 0 4 464 11 471 0.0 783
MS.gene040581.t1 AT2G18720 75.810 463 110 1 4 466 10 470 0.0 742
MS.gene040581.t1 AT2G18720 75.810 463 110 1 4 466 10 470 0.0 742
MS.gene040581.t1 AT2G18720 73.404 376 100 0 91 466 4 379 0.0 587
MS.gene040581.t1 AT4G18330 82.847 274 47 0 4 277 11 284 6.29e-170 479
MS.gene040581.t1 AT4G20360 25.067 375 201 14 29 377 76 396 9.09e-15 76.6
MS.gene040581.t1 AT4G20360 25.067 375 201 14 29 377 76 396 9.09e-15 76.6
MS.gene040581.t1 AT4G02930 25.874 286 131 10 33 288 68 302 2.09e-14 75.5

Find 118 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTGCTTCGACGGCTTCT+TGG 0.227091 2.1:+29078632 MS.gene040581:CDS
GCTTAACGGAGCAGCAATTA+TGG 0.274741 2.1:+29076889 MS.gene040581:CDS
TACTTCAATTGTGCTGAAAT+AGG 0.283478 2.1:-29077209 None:intergenic
GCCGTTCCTGGAGGCCTTAT+AGG 0.296184 2.1:+29078229 MS.gene040581:CDS
GAGCTTCAATTTGCCGTTCC+TGG 0.298396 2.1:+29078217 MS.gene040581:CDS
CAGGTCGAACTTCAATGAAT+TGG 0.308904 2.1:-29078111 None:intergenic
TATGAAGTTGATGAAATAAA+AGG 0.313474 2.1:+29077347 MS.gene040581:CDS
AGCAATCTTCTCTCCCTTGC+TGG 0.335178 2.1:-29078810 None:intergenic
CGTCAGGCTACTATCAATAT+TGG 0.341601 2.1:+29075264 MS.gene040581:CDS
GACCGAATTACTATCATATT+AGG 0.345637 2.1:-29077302 None:intergenic
AGCAAATAGTGAAACTATTC+TGG 0.352600 2.1:-29078185 None:intergenic
TTGTGGTTCCAACACCTATA+AGG 0.370270 2.1:-29078243 None:intergenic
CTCCCTTGCTGGTGCACACA+GGG 0.382466 2.1:-29078799 None:intergenic
GGAGAAATGAAGTTCCGTTC+AGG 0.383960 2.1:-29077278 None:intergenic
GGGTGATACCAGCTTGGATT+TGG 0.387569 2.1:-29078877 None:intergenic
TGAAGTTCCGTTCAGGGATT+GGG 0.389548 2.1:-29077271 None:intergenic
TCATCTTTAACAACTATTCC+AGG 0.391794 2.1:-29078130 None:intergenic
GCATTGGCGTCTCATCGGTT+GGG 0.394071 2.1:+29078853 MS.gene040581:CDS
ATGAAGTTCCGTTCAGGGAT+TGG 0.395711 2.1:-29077272 None:intergenic
GAAAGCAATATCAGGTGTTC+AGG 0.396358 2.1:+29075462 MS.gene040581:CDS
TGCTCAGAAGTTTGTGGTTG+AGG 0.402531 2.1:-29076950 None:intergenic
CTCATGGCTACTATGCTTAA+CGG 0.410989 2.1:+29076875 MS.gene040581:CDS
GCCTGACGGGATATGACTTC+AGG 0.416566 2.1:-29075249 None:intergenic
CTTCTTGGTGTCCGGACAAA+AGG 0.426909 2.1:+29078647 MS.gene040581:CDS
TCCATGTGCCACATGACCTA+TGG 0.440110 2.1:-29075425 None:intergenic
CACCTAATATGATAGTAATT+CGG 0.440151 2.1:+29077300 MS.gene040581:CDS
AGGTTGGTAGGGCAAGTTCT+TGG 0.441170 2.1:+29078292 MS.gene040581:CDS
GAAATAAAAGGAGGCGTAGC+TGG 0.445432 2.1:+29077359 MS.gene040581:CDS
GCTCAGAAGTTTGTGGTTGA+GGG 0.446551 2.1:-29076949 None:intergenic
TCCTGTAGGGCCTATGGAAG+TGG 0.453457 2.1:+29076276 MS.gene040581:intron
TTCGACGGCTTCTTGGTGTC+CGG 0.461865 2.1:+29078639 MS.gene040581:CDS
AGCATTGGCGTCTCATCGGT+TGG 0.465178 2.1:+29078852 MS.gene040581:CDS
AACATAGGATCAATGTCAAC+AGG 0.470116 2.1:+29078725 MS.gene040581:CDS
TCCTGAAGTCATATCCCGTC+AGG 0.474745 2.1:+29075248 MS.gene040581:CDS
TGAGACCTTTCCTTGTCTCT+CGG 0.480522 2.1:-29078672 None:intergenic
GGGCAAGTTCTTGGAGAGGT+TGG 0.481136 2.1:+29078301 MS.gene040581:CDS
TTCTGAGCATTTAGCTGCTG+TGG 0.485419 2.1:+29076964 MS.gene040581:CDS
CACTTGTAGGACATAGGCCT+TGG 0.485758 2.1:-29076179 None:intergenic
CCTGGAGGCCTTATAGGTGT+TGG 0.486957 2.1:+29078235 MS.gene040581:CDS
GTCTTTCCTTCAACTCAGAA+GGG 0.488529 2.1:-29078918 None:intergenic
ATCTTCCTTTCCACTTCCAT+AGG 0.488869 2.1:-29076286 None:intergenic
GAGAAATGAAGTTCCGTTCA+GGG 0.489099 2.1:-29077277 None:intergenic
TCTCCCTTGCTGGTGCACAC+AGG 0.489960 2.1:-29078800 None:intergenic
GCTAAATGCTCAGAAGTTTG+TGG 0.490501 2.1:-29076956 None:intergenic
ATGTCTCAGCAATTTCATCT+TGG 0.491832 2.1:-29076343 None:intergenic
TGTCTTTCCTTCAACTCAGA+AGG 0.495542 2.1:-29078919 None:intergenic
CATTGGCGTCTCATCGGTTG+GGG 0.501030 2.1:+29078854 MS.gene040581:CDS
CCACTTTGACACGTGCTGAC+AGG 0.507411 2.1:+29078272 MS.gene040581:CDS
ACCTATAAGGCCTCCAGGAA+CGG 0.507955 2.1:-29078230 None:intergenic
CAATTCATTGAAGTTCGACC+TGG 0.511871 2.1:+29078112 MS.gene040581:CDS
TGTGCTGAAATAGGTACTAC+TGG 0.513854 2.1:-29077200 None:intergenic
ACACGTGCTGACAGGTTGGT+AGG 0.514970 2.1:+29078280 MS.gene040581:CDS
TCCCCTGTGTGCACCAGCAA+GGG 0.516017 2.1:+29078797 MS.gene040581:CDS
AGTCCTATGTGTGATGTACC+TGG 0.519963 2.1:+29076309 MS.gene040581:CDS
TTTATCTTGGCAGGTACCAT+AGG 0.522033 2.1:+29075409 MS.gene040581:intron
TCAAGTCTACCTTGTTCTGA+AGG 0.522796 2.1:-29077015 None:intergenic
ACTTCTGAATTGCTTCATGC+TGG 0.523695 2.1:-29077060 None:intergenic
ACGGTTGTGAAAGCAATATC+AGG 0.539247 2.1:+29075454 MS.gene040581:CDS
TGTTGACATCCAACGTACTC+AGG 0.540642 2.1:-29075209 None:intergenic
TCATTTGATGTCAATAAACC+TGG 0.544265 2.1:+29077323 MS.gene040581:CDS
AGCAGTCAAAATGGCTCGGA+GGG 0.548091 2.1:+29075170 None:intergenic
TCTTTCCTTCAACTCAGAAG+GGG 0.548331 2.1:-29078917 None:intergenic
GAGAAGCATTGGCGTCTCAT+CGG 0.551399 2.1:+29078848 MS.gene040581:CDS
ATTTCATCAACTTCATAACC+AGG 0.552290 2.1:-29077341 None:intergenic
CATAATAATCCTTCAGAACA+AGG 0.553381 2.1:+29077006 MS.gene040581:CDS
TTCCCCTGTGTGCACCAGCA+AGG 0.554733 2.1:+29078796 MS.gene040581:CDS
AATATTGATAGTAGCCTGAC+GGG 0.558072 2.1:-29075262 None:intergenic
CACGTGCTGACAGGTTGGTA+GGG 0.559747 2.1:+29078281 MS.gene040581:CDS
CAGTCAAAATGGCTCGGAGG+GGG 0.565362 2.1:+29075172 None:intergenic
GAAATGCTAATGTTGAACAT+AGG 0.565740 2.1:+29078710 MS.gene040581:CDS
GGTAGGGCAAGTTCTTGGAG+AGG 0.568050 2.1:+29078297 MS.gene040581:CDS
ACCATAGGTCATGTGGCACA+TGG 0.568672 2.1:+29075424 MS.gene040581:CDS
ATAGTTGTTAAAGATGAGAG+TGG 0.568851 2.1:+29078136 MS.gene040581:CDS
CCAACACCTATAAGGCCTCC+AGG 0.574378 2.1:-29078235 None:intergenic
GTGAAGATGAACGGTGTCCA+AGG 0.574468 2.1:+29076162 MS.gene040581:CDS
CTTTCCTTCAACTCAGAAGG+GGG 0.576433 2.1:-29078916 None:intergenic
CGAATTACTATCATATTAGG+TGG 0.577597 2.1:-29077299 None:intergenic
AACGGAGCAGCAATTATGGA+TGG 0.578784 2.1:+29076893 MS.gene040581:CDS
TAGCTGGTGGGAGTATTCTG+AGG 0.581868 2.1:+29077375 MS.gene040581:CDS
GTAGACGTGTTGAGAAGCAT+TGG 0.583914 2.1:+29078837 MS.gene040581:CDS
GTAGGGACATGATATTCTCA+TGG 0.584619 2.1:+29076859 MS.gene040581:intron
GTCCTATGTGTGATGTACCT+GGG 0.585334 2.1:+29076310 MS.gene040581:CDS
CCTGTCAGCACGTGTCAAAG+TGG 0.586026 2.1:-29078272 None:intergenic
GAAGTTGATGAAATAAAAGG+AGG 0.590625 2.1:+29077350 MS.gene040581:CDS
AGACTTGATTCAAGAAAATG+TGG 0.590713 2.1:+29077030 MS.gene040581:CDS
TGGAGTAGATCGGTGTGCAT+CGG 0.591503 2.1:-29078165 None:intergenic
CGTAACATTACAATCAAGCT+CGG 0.595254 2.1:+29076113 MS.gene040581:CDS
CATCAAGGGTGATACCAGCT+TGG 0.595808 2.1:-29078883 None:intergenic
CTTCAATTTGCCGTTCCTGG+AGG 0.596296 2.1:+29078220 MS.gene040581:CDS
GAAACTATTCTGGAGTAGAT+CGG 0.596707 2.1:-29078175 None:intergenic
CAATATTGATAGTAGCCTGA+CGG 0.605239 2.1:-29075263 None:intergenic
GGCAGGTACCATAGGTCATG+TGG 0.612626 2.1:+29075417 MS.gene040581:intron
ATTCTTCACAGCTACCACTC+TGG 0.613369 2.1:-29078750 None:intergenic
TAAAAGGAGGCGTAGCTGGT+GGG 0.613463 2.1:+29077363 MS.gene040581:CDS
GGTTGGGGCCAAATCCAAGC+TGG 0.614923 2.1:+29078869 MS.gene040581:CDS
TTTGACACGTGCTGACAGGT+TGG 0.616502 2.1:+29078276 MS.gene040581:CDS
AATACCCACTTGTAGGACAT+AGG 0.621972 2.1:-29076185 None:intergenic
TCCCTTGCTGGTGCACACAG+GGG 0.623304 2.1:-29078798 None:intergenic
TATACAAGTGTGAAGATGAA+CGG 0.627460 2.1:+29076153 MS.gene040581:CDS
AAGAAGCAGTCAAAATGGCT+CGG 0.627647 2.1:+29075166 None:intergenic
TAGGGCCTATGGAAGTGGAA+AGG 0.630198 2.1:+29076281 MS.gene040581:intron
TGTCAAAGTGGGATCCATTG+TGG 0.634276 2.1:-29078260 None:intergenic
ATAAAAGGAGGCGTAGCTGG+TGG 0.637739 2.1:+29077362 MS.gene040581:CDS
CTGTCAGCACGTGTCAAAGT+GGG 0.638696 2.1:-29078271 None:intergenic
TATAGGTGTTGGAACCACAA+TGG 0.639191 2.1:+29078246 MS.gene040581:CDS
GCAGTCAAAATGGCTCGGAG+GGG 0.639861 2.1:+29075171 None:intergenic
AAAAGATCCCAATCCCTGAA+CGG 0.642212 2.1:+29077264 MS.gene040581:CDS
TTTCCTTCAACTCAGAAGGG+GGG 0.643371 2.1:-29078915 None:intergenic
ACAAAAGGTTCCGAGAGACA+AGG 0.646997 2.1:+29078662 MS.gene040581:CDS
AGGTTCCGAGAGACAAGGAA+AGG 0.647286 2.1:+29078667 MS.gene040581:CDS
TGTGGCACATGGAAAGTCAA+CGG 0.652230 2.1:+29075435 MS.gene040581:CDS
AGCTGGTGGGAGTATTCTGA+GGG 0.654609 2.1:+29077376 MS.gene040581:CDS
AATGTCAACAGGTGCCAGAG+TGG 0.677771 2.1:+29078736 MS.gene040581:CDS
GGTAGCTGTGAAGAATGACT+TGG 0.690795 2.1:+29078757 MS.gene040581:CDS
AAGCAGTCAAAATGGCTCGG+AGG 0.693793 2.1:+29075169 None:intergenic
AACCCAGGTACATCACACAT+AGG 0.706120 2.1:-29076312 None:intergenic
GGAACAAGACCTGAGTACGT+TGG 0.708584 2.1:+29075200 MS.gene040581:CDS
GATATGACTTCAGGAGACAG+CGG 0.729324 2.1:-29075240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCATATATTGAAACA+AGG - chr2.1:29075831-29075850 None:intergenic 15.0%
!! AATTTAATAGTACATATACA+TGG - chr2.1:29076590-29076609 None:intergenic 15.0%
!! AGAATAAATGTTATAAATCA+AGG - chr2.1:29077724-29077743 None:intergenic 15.0%
!! TTGAGAAAAATATAAATTCA+AGG - chr2.1:29075738-29075757 None:intergenic 15.0%
!! TTGCATAAAAAAATTAACTT+CGG - chr2.1:29076660-29076679 None:intergenic 15.0%
!! TTTCGAAAATTATAAATTGT+AGG - chr2.1:29075695-29075714 None:intergenic 15.0%
!!! ATTTTTTTATGCAATTAAAG+TGG + chr2.1:29076666-29076685 MS.gene040581:intron 15.0%
!!! TATCAAGTTATTCTAAAATT+TGG - chr2.1:29077872-29077891 None:intergenic 15.0%
!!! TTATTTTAGATTTGTCATTT+TGG + chr2.1:29076206-29076225 MS.gene040581:intron 15.0%
!! AATTGAGAGATAATATGATA+AGG - chr2.1:29076535-29076554 None:intergenic 20.0%
!! ATATGGAAATATCTAAATGA+TGG + chr2.1:29075594-29075613 MS.gene040581:intron 20.0%
!! ATTCAATAATATAGCATAGA+TGG - chr2.1:29076778-29076797 None:intergenic 20.0%
!! GAAAGATGTAAAAAATTACA+AGG - chr2.1:29077825-29077844 None:intergenic 20.0%
!! GAACTAAAATACATATATCA+TGG - chr2.1:29075998-29076017 None:intergenic 20.0%
!! TATCATTTATGTTGTTCAAA+AGG - chr2.1:29077133-29077152 None:intergenic 20.0%
!! TTTGCAATTTAAATGAAAAG+TGG + chr2.1:29077609-29077628 MS.gene040581:intron 20.0%
!!! CAATTGGTTTTATTTTACAT+TGG + chr2.1:29076486-29076505 MS.gene040581:intron 20.0%
!!! TATGAAGTTGATGAAATAAA+AGG + chr2.1:29077347-29077366 MS.gene040581:CDS 20.0%
!!! TGCATTTTTAGTTTTGATAA+AGG + chr2.1:29075961-29075980 MS.gene040581:intron 20.0%
!!! TTTTAGAATAACTTGATAGA+AGG + chr2.1:29077874-29077893 MS.gene040581:intron 20.0%
! AAAAAAATTAACTTCGGTGA+GGG - chr2.1:29076654-29076673 None:intergenic 25.0%
! AATGTTATAAATCAAGGCAT+TGG - chr2.1:29077718-29077737 None:intergenic 25.0%
! AATTTGTGGTATATGGTATA+TGG + chr2.1:29075577-29075596 MS.gene040581:intron 25.0%
! ATAAGATTCTAGTATGATGT+AGG + chr2.1:29076439-29076458 MS.gene040581:intron 25.0%
! ATCGGTAATGAAATTTATCT+TGG + chr2.1:29075396-29075415 MS.gene040581:intron 25.0%
! ATCTGTAAATGTGTAATTTG+TGG + chr2.1:29075563-29075582 MS.gene040581:intron 25.0%
! ATTCATAAGACAAATCAATC+AGG + chr2.1:29078403-29078422 MS.gene040581:intron 25.0%
! CACCTAATATGATAGTAATT+CGG + chr2.1:29077300-29077319 MS.gene040581:CDS 25.0%
! CGTACAATTTATTATTTGCA+GGG + chr2.1:29078073-29078092 MS.gene040581:intron 25.0%
! CTATTTCCAAACAAGAAAAT+GGG + chr2.1:29077911-29077930 MS.gene040581:intron 25.0%
! GTCTTTAGATAATTTACACT+TGG + chr2.1:29078455-29078474 MS.gene040581:intron 25.0%
! TAAAAAAATTAACTTCGGTG+AGG - chr2.1:29076655-29076674 None:intergenic 25.0%
! TAAAATACACATATCTTCCA+GGG - chr2.1:29076565-29076584 None:intergenic 25.0%
! TAAGATTCTAGTATGATGTA+GGG + chr2.1:29076440-29076459 MS.gene040581:intron 25.0%
! TATATAACAAATGATGGTTC+AGG - chr2.1:29076397-29076416 None:intergenic 25.0%
! TCGTACAATTTATTATTTGC+AGG + chr2.1:29078072-29078091 MS.gene040581:intron 25.0%
! TCTATTTCCAAACAAGAAAA+TGG + chr2.1:29077910-29077929 MS.gene040581:intron 25.0%
!! AATGTGTAATTTGTGGTATA+TGG + chr2.1:29075570-29075589 MS.gene040581:intron 25.0%
!! ATACAAGTAAGTTTTCTATG+AGG + chr2.1:29077085-29077104 MS.gene040581:intron 25.0%
!! TATATTTTCTCAAACCAAAC+AGG + chr2.1:29077643-29077662 MS.gene040581:intron 25.0%
!! TGCAAATTAAACATGCTTTT+TGG - chr2.1:29077429-29077448 None:intergenic 25.0%
!! TTTCTTGTTTGGAAATAGAA+TGG - chr2.1:29077909-29077928 None:intergenic 25.0%
!! TTTTTAATGAACTATGCACA+TGG + chr2.1:29078592-29078611 MS.gene040581:intron 25.0%
!!! AAGTCATTCTCTACTTTTTT+GGG + chr2.1:29075499-29075518 MS.gene040581:intron 25.0%
!!! AGATTTGTCATTTTGGTATT+AGG + chr2.1:29076213-29076232 MS.gene040581:intron 25.0%
!!! GAACCATCATTTGTTATATA+GGG + chr2.1:29076397-29076416 MS.gene040581:intron 25.0%
!!! TGAACCATCATTTGTTATAT+AGG + chr2.1:29076396-29076415 MS.gene040581:intron 25.0%
!!! TGTTGATCTTTTTTCTGTTA+TGG + chr2.1:29078527-29078546 MS.gene040581:intron 25.0%
!!! TTCTAAAATTTGGATGCATA+AGG - chr2.1:29077862-29077881 None:intergenic 25.0%
!!! TTGTTATATAGGGTTGTTTT+AGG + chr2.1:29076407-29076426 MS.gene040581:intron 25.0%
AAAAGACAACAGTGAAAACA+AGG + chr2.1:29077579-29077598 MS.gene040581:intron 30.0%
AAAGACAACAGTGAAAACAA+GGG + chr2.1:29077580-29077599 MS.gene040581:intron 30.0%
AAATTAAACATATACCCCCA+AGG + chr2.1:29076605-29076624 MS.gene040581:intron 30.0%
AACACTCTTGACACTAAATT+AGG - chr2.1:29078511-29078530 None:intergenic 30.0%
AAGATTCTAGTATGATGTAG+GGG + chr2.1:29076441-29076460 MS.gene040581:intron 30.0%
ACACTCTTGACACTAAATTA+GGG - chr2.1:29078510-29078529 None:intergenic 30.0%
ACAGTCTGTAAAACATTCAT+GGG - chr2.1:29076071-29076090 None:intergenic 30.0%
AGACTTGATTCAAGAAAATG+TGG + chr2.1:29077030-29077049 MS.gene040581:CDS 30.0%
AGCAAATAGTGAAACTATTC+TGG - chr2.1:29078188-29078207 None:intergenic 30.0%
ATAGTTGTTAAAGATGAGAG+TGG + chr2.1:29078136-29078155 MS.gene040581:CDS 30.0%
ATCTAAAGACTTCAGAGAAA+TGG - chr2.1:29078445-29078464 None:intergenic 30.0%
ATTCCAAACAGCAATAGAAT+TGG - chr2.1:29077681-29077700 None:intergenic 30.0%
ATTTCATCAACTTCATAACC+AGG - chr2.1:29077344-29077363 None:intergenic 30.0%
CAACCCTATATAACAAATGA+TGG - chr2.1:29076403-29076422 None:intergenic 30.0%
CACTTGGTACTAATTACAAA+TGG + chr2.1:29078471-29078490 MS.gene040581:intron 30.0%
CATAATAATCCTTCAGAACA+AGG + chr2.1:29077006-29077025 MS.gene040581:CDS 30.0%
CGAATTACTATCATATTAGG+TGG - chr2.1:29077302-29077321 None:intergenic 30.0%
CTAAAATAATACCCACTTGT+AGG - chr2.1:29076195-29076214 None:intergenic 30.0%
CTAAAATACACATATCTTCC+AGG - chr2.1:29076566-29076585 None:intergenic 30.0%
CTATACATTATCAAAGCTCA+AGG - chr2.1:29076026-29076045 None:intergenic 30.0%
CTTTCATATTCTTGCACAAT+TGG + chr2.1:29076470-29076489 MS.gene040581:intron 30.0%
GAAATGCTAATGTTGAACAT+AGG + chr2.1:29078710-29078729 MS.gene040581:CDS 30.0%
GACCGAATTACTATCATATT+AGG - chr2.1:29077305-29077324 None:intergenic 30.0%
GATACAAAATGAAAACAACG+AGG - chr2.1:29077535-29077554 None:intergenic 30.0%
GATCAATTTCCATTTCCAAT+TGG + chr2.1:29077978-29077997 MS.gene040581:intron 30.0%
GTAATGAAATTTATCTTGGC+AGG + chr2.1:29075400-29075419 MS.gene040581:intron 30.0%
GTACGGAGTTAAAAGAATTA+TGG + chr2.1:29076702-29076721 MS.gene040581:intron 30.0%
TACTTCAATTGTGCTGAAAT+AGG - chr2.1:29077212-29077231 None:intergenic 30.0%
TATACAAGTGTGAAGATGAA+CGG + chr2.1:29076153-29076172 MS.gene040581:CDS 30.0%
TCATCTTTAACAACTATTCC+AGG - chr2.1:29078133-29078152 None:intergenic 30.0%
TCATTTGATGTCAATAAACC+TGG + chr2.1:29077323-29077342 MS.gene040581:CDS 30.0%
TGTGCGATTTAAAAATGAGT+TGG + chr2.1:29076088-29076107 MS.gene040581:CDS 30.0%
TTAAAAACGGTAACAGCAAA+TGG - chr2.1:29077501-29077520 None:intergenic 30.0%
TTACTGTTCCAATTTCTGTA+GGG + chr2.1:29076842-29076861 MS.gene040581:intron 30.0%
TTCTCAATCCAATTACTAAG+CGG + chr2.1:29075751-29075770 MS.gene040581:intron 30.0%
TTTACTGTTCCAATTTCTGT+AGG + chr2.1:29076841-29076860 MS.gene040581:intron 30.0%
TTTGGAAATAGAATGGCATA+TGG - chr2.1:29077902-29077921 None:intergenic 30.0%
! GTATTAGGTCATTCATCTTT+TGG + chr2.1:29076228-29076247 MS.gene040581:intron 30.0%
! TGTGGGGTTTTTCATATAAT+GGG + chr2.1:29076740-29076759 MS.gene040581:intron 30.0%
! TTAAAGTGGTTTGCATTCAA+TGG + chr2.1:29076680-29076699 MS.gene040581:intron 30.0%
! TTAAGTCCCATTTTCTTGTT+TGG - chr2.1:29077920-29077939 None:intergenic 30.0%
! TTTCCAATTCTATTGCTGTT+TGG + chr2.1:29077675-29077694 MS.gene040581:intron 30.0%
! TTTGGATGCATAAGGTTTTA+TGG - chr2.1:29077854-29077873 None:intergenic 30.0%
!! ATAAATCAAGGCATTGGTAA+AGG - chr2.1:29077712-29077731 None:intergenic 30.0%
!! GAAGTTGATGAAATAAAAGG+AGG + chr2.1:29077350-29077369 MS.gene040581:CDS 30.0%
!! TAAACTTTTTCTTGCTTCGA+CGG + chr2.1:29078624-29078643 MS.gene040581:CDS 30.0%
!! TTATTTGCAGGGTGTTTTAA+AGG + chr2.1:29078084-29078103 MS.gene040581:intron 30.0%
!!! AAATGATACTCCCCTTTTTT+TGG + chr2.1:29077145-29077164 MS.gene040581:intron 30.0%
!!! AATTATGGTGCTTTTTCGTA+TGG + chr2.1:29076717-29076736 MS.gene040581:intron 30.0%
!!! AGTCATTCTCTACTTTTTTG+GGG + chr2.1:29075500-29075519 MS.gene040581:intron 30.0%
!!! CAAGTCATTCTCTACTTTTT+TGG + chr2.1:29075498-29075517 MS.gene040581:intron 30.0%
AAACATTCATGGGAGAACAT+AGG - chr2.1:29076061-29076080 None:intergenic 35.0%
AAATACCTTTCCAGCACAAT+AGG - chr2.1:29078566-29078585 None:intergenic 35.0%
AACATAGGATCAATGTCAAC+AGG + chr2.1:29078725-29078744 MS.gene040581:CDS 35.0%
AAGACAACAGTGAAAACAAG+GGG + chr2.1:29077581-29077600 MS.gene040581:intron 35.0%
AATACCTTTCCAGCACAATA+GGG - chr2.1:29078565-29078584 None:intergenic 35.0%
AGAACGTGCAATATGATACA+TGG + chr2.1:29077775-29077794 MS.gene040581:intron 35.0%
AGATTCTAGTATGATGTAGG+GGG + chr2.1:29076442-29076461 MS.gene040581:intron 35.0%
AGGGTAAGTCTTTCTTTCTT+TGG + chr2.1:29077395-29077414 MS.gene040581:intron 35.0%
ATGTCTCAGCAATTTCATCT+TGG - chr2.1:29076346-29076365 None:intergenic 35.0%
CAATCAACTATGTAACCACT+AGG - chr2.1:29075904-29075923 None:intergenic 35.0%
CACAGTCTGTAAAACATTCA+TGG - chr2.1:29076072-29076091 None:intergenic 35.0%
CACTCTTGACACTAAATTAG+GGG - chr2.1:29078509-29078528 None:intergenic 35.0%
CGTAACATTACAATCAAGCT+CGG + chr2.1:29076113-29076132 MS.gene040581:CDS 35.0%
CTGGGAAAACACCAAAAAAA+GGG - chr2.1:29077159-29077178 None:intergenic 35.0%
GGCAGTCTTGCAATTAAAAA+CGG - chr2.1:29077514-29077533 None:intergenic 35.0%
GGTACTAATTACAAATGGAG+AGG + chr2.1:29078476-29078495 MS.gene040581:intron 35.0%
GTAGAGAATGACTTGATACA+AGG - chr2.1:29075493-29075512 None:intergenic 35.0%
TATCATGTCCCTACAGAAAT+TGG - chr2.1:29076853-29076872 None:intergenic 35.0%
TCAAGTTCCACAAAAACATC+AGG - chr2.1:29078334-29078353 None:intergenic 35.0%
TCTCAATCCAATTACTAAGC+GGG + chr2.1:29075752-29075771 MS.gene040581:intron 35.0%
TCTCTCAATTCTTTAATCCC+TGG + chr2.1:29076545-29076564 MS.gene040581:intron 35.0%
TGGGAAAACACCAAAAAAAG+GGG - chr2.1:29077158-29077177 None:intergenic 35.0%
TTTCGAAATCCAAGTAGTGT+TGG + chr2.1:29075707-29075726 MS.gene040581:intron 35.0%
! AACCACTAGGAACCAATTTT+TGG - chr2.1:29075891-29075910 None:intergenic 35.0%
! AATATTGATAGTAGCCTGAC+GGG - chr2.1:29075265-29075284 None:intergenic 35.0%
! ATCTTGGAATTTTCAAACCC+AGG - chr2.1:29076330-29076349 None:intergenic 35.0%
! CAAGTAAGTTTTCTATGAGG+AGG + chr2.1:29077088-29077107 MS.gene040581:intron 35.0%
! CAATATTGATAGTAGCCTGA+CGG - chr2.1:29075266-29075285 None:intergenic 35.0%
! CTGTTTGAAACAATTCACCT+TGG - chr2.1:29075631-29075650 None:intergenic 35.0%
! GTGTGGGGTTTTTCATATAA+TGG + chr2.1:29076739-29076758 MS.gene040581:intron 35.0%
! TGATGGATCTATTTACACCA+AGG + chr2.1:29075611-29075630 MS.gene040581:intron 35.0%
!! AAAGCATTGGCTTACATAGT+AGG - chr2.1:29076631-29076650 None:intergenic 35.0%
!! GAAACTATTCTGGAGTAGAT+CGG - chr2.1:29078178-29078197 None:intergenic 35.0%
!! TGATGTTTTTGTGGAACTTG+AGG + chr2.1:29078333-29078352 MS.gene040581:CDS 35.0%
!! TGTTTCTTTTGTTGATTGCC+CGG + chr2.1:29076365-29076384 MS.gene040581:CDS 35.0%
!!! CTTTTTTTGGTGTTTTCCCA+GGG + chr2.1:29077158-29077177 MS.gene040581:intron 35.0%
!!! GTCATTCTCTACTTTTTTGG+GGG + chr2.1:29075501-29075520 MS.gene040581:intron 35.0%
AAAAGATCCCAATCCCTGAA+CGG + chr2.1:29077264-29077283 MS.gene040581:CDS 40.0%
AAACATGGCTCATGATCAAC+GGG - chr2.1:29078017-29078036 None:intergenic 40.0%
AAGGAGAGCAAACAATTACG+AGG - chr2.1:29076516-29076535 None:intergenic 40.0%
AATACCCACTTGTAGGACAT+AGG - chr2.1:29076188-29076207 None:intergenic 40.0%
ACGGTTGTGAAAGCAATATC+AGG + chr2.1:29075454-29075473 MS.gene040581:CDS 40.0%
ACTTCTGAATTGCTTCATGC+TGG - chr2.1:29077063-29077082 None:intergenic 40.0%
AGGAGAGCAAACAATTACGA+GGG - chr2.1:29076515-29076534 None:intergenic 40.0%
ATACCTTTCCAGCACAATAG+GGG - chr2.1:29078564-29078583 None:intergenic 40.0%
ATCTTCCTTTCCACTTCCAT+AGG - chr2.1:29076289-29076308 None:intergenic 40.0%
CAAACATGGCTCATGATCAA+CGG - chr2.1:29078018-29078037 None:intergenic 40.0%
CAAATGTCTAACCCCAAACA+TGG - chr2.1:29078032-29078051 None:intergenic 40.0%
CAATTCATTGAAGTTCGACC+TGG + chr2.1:29078112-29078131 MS.gene040581:CDS 40.0%
CAGGTCGAACTTCAATGAAT+TGG - chr2.1:29078114-29078133 None:intergenic 40.0%
CCTGGGAAAACACCAAAAAA+AGG - chr2.1:29077160-29077179 None:intergenic 40.0%
CGTCAGGCTACTATCAATAT+TGG + chr2.1:29075264-29075283 MS.gene040581:CDS 40.0%
CTCATGGCTACTATGCTTAA+CGG + chr2.1:29076875-29076894 MS.gene040581:CDS 40.0%
GAAAGCAATATCAGGTGTTC+AGG + chr2.1:29075462-29075481 MS.gene040581:CDS 40.0%
GAGAAATGAAGTTCCGTTCA+GGG - chr2.1:29077280-29077299 None:intergenic 40.0%
GCTAAATGCTCAGAAGTTTG+TGG - chr2.1:29076959-29076978 None:intergenic 40.0%
GTAGGGACATGATATTCTCA+TGG + chr2.1:29076859-29076878 MS.gene040581:intron 40.0%
GTTGATCATGAGCCATGTTT+GGG + chr2.1:29078017-29078036 MS.gene040581:intron 40.0%
TCAAGTCTACCTTGTTCTGA+AGG - chr2.1:29077018-29077037 None:intergenic 40.0%
TCATGTACCCGCTTAGTAAT+TGG - chr2.1:29075762-29075781 None:intergenic 40.0%
TGTGCTGAAATAGGTACTAC+TGG - chr2.1:29077203-29077222 None:intergenic 40.0%
TTAGCCGTCTCTCCAAAAAT+TGG + chr2.1:29075876-29075895 MS.gene040581:intron 40.0%
TTGATCATGAGCCATGTTTG+GGG + chr2.1:29078018-29078037 MS.gene040581:intron 40.0%
TTGTGGTTCCAACACCTATA+AGG - chr2.1:29078246-29078265 None:intergenic 40.0%
TTTATCTTGGCAGGTACCAT+AGG + chr2.1:29075409-29075428 MS.gene040581:intron 40.0%
! CTCCAAAAATTGGTTCCTAG+TGG + chr2.1:29075886-29075905 MS.gene040581:intron 40.0%
! GTGGTTTGCATTCAATGGTA+CGG + chr2.1:29076685-29076704 MS.gene040581:intron 40.0%
! GTTGTGTGCATTTTCGTCAA+TGG + chr2.1:29075361-29075380 MS.gene040581:intron 40.0%
!! ATCACTGCCTGATGTTTTTG+TGG + chr2.1:29078324-29078343 MS.gene040581:CDS 40.0%
!! GGAACCAATTTTTGGAGAGA+CGG - chr2.1:29075883-29075902 None:intergenic 40.0%
!! TATAGGTGTTGGAACCACAA+TGG + chr2.1:29078246-29078265 MS.gene040581:CDS 40.0%
!!! ATTTTTTTCCCCCTTCCTGT+AGG + chr2.1:29076262-29076281 MS.gene040581:intron 40.0%
!!! CCTTTTTTTGGTGTTTTCCC+AGG + chr2.1:29077157-29077176 MS.gene040581:intron 40.0%
!!! TCTACTTTTTTGGGGGTGTT+TGG + chr2.1:29075508-29075527 MS.gene040581:intron 40.0%
!!! TTTTTTTCCCCCTTCCTGTA+GGG + chr2.1:29076263-29076282 MS.gene040581:intron 40.0%
AACCCAGGTACATCACACAT+AGG - chr2.1:29076315-29076334 None:intergenic 45.0%
AACGGAGCAGCAATTATGGA+TGG + chr2.1:29076893-29076912 MS.gene040581:CDS 45.0%
AAGGCAATGCCAACACTACT+TGG - chr2.1:29075719-29075738 None:intergenic 45.0%
AAGGCCTATGTCCTACAAGT+GGG + chr2.1:29076181-29076200 MS.gene040581:intron 45.0%
ACAAAAGGTTCCGAGAGACA+AGG + chr2.1:29078662-29078681 MS.gene040581:CDS 45.0%
AGTCCTATGTGTGATGTACC+TGG + chr2.1:29076309-29076328 MS.gene040581:CDS 45.0%
ATGAAGTTCCGTTCAGGGAT+TGG - chr2.1:29077275-29077294 None:intergenic 45.0%
ATGATGGTTCAGGACCTTAC+CGG - chr2.1:29076387-29076406 None:intergenic 45.0%
ATTCTTCACAGCTACCACTC+TGG - chr2.1:29078753-29078772 None:intergenic 45.0%
CAATGGCTGTTGATGCTGAT+CGG + chr2.1:29075378-29075397 MS.gene040581:intron 45.0%
CGTTGATCATGAGCCATGTT+TGG + chr2.1:29078016-29078035 MS.gene040581:intron 45.0%
GATATGACTTCAGGAGACAG+CGG - chr2.1:29075243-29075262 None:intergenic 45.0%
GCTCAGAAGTTTGTGGTTGA+GGG - chr2.1:29076952-29076971 None:intergenic 45.0%
GCTTAACGGAGCAGCAATTA+TGG + chr2.1:29076889-29076908 MS.gene040581:CDS 45.0%
GGAAATGCTAAGAGCCTGTT+TGG - chr2.1:29077660-29077679 None:intergenic 45.0%
GGAGAAATGAAGTTCCGTTC+AGG - chr2.1:29077281-29077300 None:intergenic 45.0%
GGTAGCTGTGAAGAATGACT+TGG + chr2.1:29078757-29078776 MS.gene040581:CDS 45.0%
GTCCTATGTGTGATGTACCT+GGG + chr2.1:29076310-29076329 MS.gene040581:CDS 45.0%
TACCTTTCCAGCACAATAGG+GGG - chr2.1:29078563-29078582 None:intergenic 45.0%
TGAAGTTCCGTTCAGGGATT+GGG - chr2.1:29077274-29077293 None:intergenic 45.0%
TGAGACCTTTCCTTGTCTCT+CGG - chr2.1:29078675-29078694 None:intergenic 45.0%
TGCTCAGAAGTTTGTGGTTG+AGG - chr2.1:29076953-29076972 None:intergenic 45.0%
TGGCTTACATAGTAGGCCTT+GGG - chr2.1:29076624-29076643 None:intergenic 45.0%
TGGTCTCAGCCAATTGGAAA+TGG - chr2.1:29077990-29078009 None:intergenic 45.0%
TGTCAAAGTGGGATCCATTG+TGG - chr2.1:29078263-29078282 None:intergenic 45.0%
TGTGGCACATGGAAAGTCAA+CGG + chr2.1:29075435-29075454 MS.gene040581:CDS 45.0%
TGTTGACATCCAACGTACTC+AGG - chr2.1:29075212-29075231 None:intergenic 45.0%
TTCTGAGCATTTAGCTGCTG+TGG + chr2.1:29076964-29076983 MS.gene040581:CDS 45.0%
TTGGCTTACATAGTAGGCCT+TGG - chr2.1:29076625-29076644 None:intergenic 45.0%
! AACTATGCACATGGTCTTGC+AGG + chr2.1:29078601-29078620 MS.gene040581:intron 45.0%
! GAAATAAAAGGAGGCGTAGC+TGG + chr2.1:29077359-29077378 MS.gene040581:CDS 45.0%
! GTAGACGTGTTGAGAAGCAT+TGG + chr2.1:29078837-29078856 MS.gene040581:CDS 45.0%
!! CTTTTGTTGATTGCCCGGTA+AGG + chr2.1:29076370-29076389 MS.gene040581:intron 45.0%
!!! GGTGCTTTTTCGTATGGTGT+GGG + chr2.1:29076723-29076742 MS.gene040581:intron 45.0%
!!! GTGCTTTTTCGTATGGTGTG+GGG + chr2.1:29076724-29076743 MS.gene040581:intron 45.0%
!!! TGGTGCTTTTTCGTATGGTG+TGG + chr2.1:29076722-29076741 MS.gene040581:intron 45.0%
!!! TTTTTGGGGGTGTTTGGCTA+AGG + chr2.1:29075514-29075533 MS.gene040581:intron 45.0%
!!! ATATATTTCAATATTTTTAT+AGG + chr2.1:29075291-29075310 MS.gene040581:intron 5.0%
AATGTCAACAGGTGCCAGAG+TGG + chr2.1:29078736-29078755 MS.gene040581:CDS 50.0%
ACCATAGGTCATGTGGCACA+TGG + chr2.1:29075424-29075443 MS.gene040581:CDS 50.0%
ACCTATAAGGCCTCCAGGAA+CGG - chr2.1:29078233-29078252 None:intergenic 50.0%
ACCTTTCCAGCACAATAGGG+GGG - chr2.1:29078562-29078581 None:intergenic 50.0%
ACTATCAGCAACAGTGCCCT+GGG - chr2.1:29077177-29077196 None:intergenic 50.0%
AGCAATCTTCTCTCCCTTGC+TGG - chr2.1:29078813-29078832 None:intergenic 50.0%
AGGTTCCGAGAGACAAGGAA+AGG + chr2.1:29078667-29078686 MS.gene040581:CDS 50.0%
CAAGGCCTATGTCCTACAAG+TGG + chr2.1:29076180-29076199 MS.gene040581:intron 50.0%
CACTTGTAGGACATAGGCCT+TGG - chr2.1:29076182-29076201 None:intergenic 50.0%
CATCAAGGGTGATACCAGCT+TGG - chr2.1:29078886-29078905 None:intergenic 50.0%
CCACAGAACCTAACATCTGC+AGG - chr2.1:29077461-29077480 None:intergenic 50.0%
CCTGCAGATGTTAGGTTCTG+TGG + chr2.1:29077458-29077477 MS.gene040581:intron 50.0%
CGAGACTGCAAGAGACAAGT+AGG - chr2.1:29078371-29078390 None:intergenic 50.0%
CTGTCAGCACGTGTCAAAGT+GGG - chr2.1:29078274-29078293 None:intergenic 50.0%
CTTCAATTTGCCGTTCCTGG+AGG + chr2.1:29078220-29078239 MS.gene040581:CDS 50.0%
GAACCTAACATCTGCAGGTC+AGG - chr2.1:29077456-29077475 None:intergenic 50.0%
GAGCTTCAATTTGCCGTTCC+TGG + chr2.1:29078217-29078236 MS.gene040581:CDS 50.0%
GCTCATGATCAACGGGTACA+TGG - chr2.1:29078010-29078029 None:intergenic 50.0%
GCTTACATAGTAGGCCTTGG+GGG - chr2.1:29076622-29076641 None:intergenic 50.0%
GGAACAAGACCTGAGTACGT+TGG + chr2.1:29075200-29075219 MS.gene040581:CDS 50.0%
GGCTTACATAGTAGGCCTTG+GGG - chr2.1:29076623-29076642 None:intergenic 50.0%
GGGTGATACCAGCTTGGATT+TGG - chr2.1:29078880-29078899 None:intergenic 50.0%
GGGTGTTTGGCTAAGGATAG+CGG + chr2.1:29075521-29075540 MS.gene040581:intron 50.0%
GGTACATGGTCTCAGCCAAT+TGG - chr2.1:29077996-29078015 None:intergenic 50.0%
GTGAAGATGAACGGTGTCCA+AGG + chr2.1:29076162-29076181 MS.gene040581:CDS 50.0%
TAGGGCCTATGGAAGTGGAA+AGG + chr2.1:29076281-29076300 MS.gene040581:intron 50.0%
TCCATGTGCCACATGACCTA+TGG - chr2.1:29075428-29075447 None:intergenic 50.0%
TCCTGAAGTCATATCCCGTC+AGG + chr2.1:29075248-29075267 MS.gene040581:CDS 50.0%
TGACCTGACCTGCAGATGTT+AGG + chr2.1:29077450-29077469 MS.gene040581:intron 50.0%
TGATGGTTCAGGACCTTACC+GGG - chr2.1:29076386-29076405 None:intergenic 50.0%
TGGAGTAGATCGGTGTGCAT+CGG - chr2.1:29078168-29078187 None:intergenic 50.0%
TTAGTTCCCCCCTATTGTGC+TGG + chr2.1:29078553-29078572 MS.gene040581:intron 50.0%
TTCCATAGGCCCTACAGGAA+GGG - chr2.1:29076275-29076294 None:intergenic 50.0%
TTCTTGCTTCGACGGCTTCT+TGG + chr2.1:29078632-29078651 MS.gene040581:CDS 50.0%
TTGTCTCTTGCAGTCTCGCT+TGG + chr2.1:29078373-29078392 MS.gene040581:intron 50.0%
! ACTTCGGTGAGGGAAAGCAT+TGG - chr2.1:29076644-29076663 None:intergenic 50.0%
! ATAAAAGGAGGCGTAGCTGG+TGG + chr2.1:29077362-29077381 MS.gene040581:CDS 50.0%
! GTCTCTCGGAACCTTTTGTC+CGG - chr2.1:29078661-29078680 None:intergenic 50.0%
! TAAAAGGAGGCGTAGCTGGT+GGG + chr2.1:29077363-29077382 MS.gene040581:CDS 50.0%
! TTTGACACGTGCTGACAGGT+TGG + chr2.1:29078276-29078295 MS.gene040581:CDS 50.0%
!! AGCTGGTGGGAGTATTCTGA+GGG + chr2.1:29077376-29077395 MS.gene040581:CDS 50.0%
!! AGGTTGGTAGGGCAAGTTCT+TGG + chr2.1:29078292-29078311 MS.gene040581:CDS 50.0%
!! CTTCTTGGTGTCCGGACAAA+AGG + chr2.1:29078647-29078666 MS.gene040581:CDS 50.0%
!! GAGAAGCATTGGCGTCTCAT+CGG + chr2.1:29078848-29078867 MS.gene040581:CDS 50.0%
!! TAGCTGGTGGGAGTATTCTG+AGG + chr2.1:29077375-29077394 MS.gene040581:CDS 50.0%
CACTATCAGCAACAGTGCCC+TGG - chr2.1:29077178-29077197 None:intergenic 55.0%
CCAACACCTATAAGGCCTCC+AGG - chr2.1:29078238-29078257 None:intergenic 55.0%
CCTGTCAGCACGTGTCAAAG+TGG - chr2.1:29078275-29078294 None:intergenic 55.0%
CTTCCATAGGCCCTACAGGA+AGG - chr2.1:29076276-29076295 None:intergenic 55.0%
GCCTGACGGGATATGACTTC+AGG - chr2.1:29075252-29075271 None:intergenic 55.0%
GGCAGGTACCATAGGTCATG+TGG + chr2.1:29075417-29075436 MS.gene040581:intron 55.0%
GGGCAAGTTCTTGGAGAGGT+TGG + chr2.1:29078301-29078320 MS.gene040581:CDS 55.0%
GGTAGGGCAAGTTCTTGGAG+AGG + chr2.1:29078297-29078316 MS.gene040581:CDS 55.0%
TCCACTTCCATAGGCCCTAC+AGG - chr2.1:29076280-29076299 None:intergenic 55.0%
TCCATAGGCCCTACAGGAAG+GGG - chr2.1:29076274-29076293 None:intergenic 55.0%
TCCCCCCTATTGTGCTGGAA+AGG + chr2.1:29078558-29078577 MS.gene040581:intron 55.0%
TCCTGTAGGGCCTATGGAAG+TGG + chr2.1:29076276-29076295 MS.gene040581:intron 55.0%
! CATTGGCGTCTCATCGGTTG+GGG + chr2.1:29078854-29078873 MS.gene040581:CDS 55.0%
! CCACTTTGACACGTGCTGAC+AGG + chr2.1:29078272-29078291 MS.gene040581:CDS 55.0%
! CCTGGAGGCCTTATAGGTGT+TGG + chr2.1:29078235-29078254 MS.gene040581:CDS 55.0%
! GCATTGGCGTCTCATCGGTT+GGG + chr2.1:29078853-29078872 MS.gene040581:CDS 55.0%
!! ACACGTGCTGACAGGTTGGT+AGG + chr2.1:29078280-29078299 MS.gene040581:CDS 55.0%
!! AGCATTGGCGTCTCATCGGT+TGG + chr2.1:29078852-29078871 MS.gene040581:CDS 55.0%
!! CACGTGCTGACAGGTTGGTA+GGG + chr2.1:29078281-29078300 MS.gene040581:CDS 55.0%
!! TTCGACGGCTTCTTGGTGTC+CGG + chr2.1:29078639-29078658 MS.gene040581:CDS 55.0%
CCATAGGCCCTACAGGAAGG+GGG - chr2.1:29076273-29076292 None:intergenic 60.0%
CTCCCTTGCTGGTGCACACA+GGG - chr2.1:29078802-29078821 None:intergenic 60.0%
GGGGGCAGGAGGAACATCAA+GGG - chr2.1:29078900-29078919 None:intergenic 60.0%
GGTTGGGGCCAAATCCAAGC+TGG + chr2.1:29078869-29078888 MS.gene040581:CDS 60.0%
TCCCCTGTGTGCACCAGCAA+GGG + chr2.1:29078797-29078816 MS.gene040581:CDS 60.0%
TCCCTTGCTGGTGCACACAG+GGG - chr2.1:29078801-29078820 None:intergenic 60.0%
TCTCCCTTGCTGGTGCACAC+AGG - chr2.1:29078803-29078822 None:intergenic 60.0%
TTCCCCTGTGTGCACCAGCA+AGG + chr2.1:29078796-29078815 MS.gene040581:CDS 60.0%
! GCCGTTCCTGGAGGCCTTAT+AGG + chr2.1:29078229-29078248 MS.gene040581:CDS 60.0%
CAACTCAGAAGGGGGGCAGG+AGG - chr2.1:29078911-29078930 None:intergenic 65.0%
CCCCCTTCCTGTAGGGCCTA+TGG + chr2.1:29076270-29076289 MS.gene040581:intron 65.0%
GGGGGGCAGGAGGAACATCA+AGG - chr2.1:29078901-29078920 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 29075180 29078931 29075180 ID=MS.gene040581
chr2.1 mRNA 29075180 29078931 29075180 ID=MS.gene040581.t1;Parent=MS.gene040581
chr2.1 exon 29075180 29075285 29075180 ID=MS.gene040581.t1.exon1;Parent=MS.gene040581.t1
chr2.1 CDS 29075180 29075285 29075180 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1 exon 29075422 29075483 29075422 ID=MS.gene040581.t1.exon2;Parent=MS.gene040581.t1
chr2.1 CDS 29075422 29075483 29075422 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1 exon 29076086 29076198 29076086 ID=MS.gene040581.t1.exon3;Parent=MS.gene040581.t1
chr2.1 CDS 29076086 29076198 29076086 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1 exon 29076284 29076386 29076284 ID=MS.gene040581.t1.exon4;Parent=MS.gene040581.t1
chr2.1 CDS 29076284 29076386 29076284 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1 exon 29076863 29077090 29076863 ID=MS.gene040581.t1.exon5;Parent=MS.gene040581.t1
chr2.1 CDS 29076863 29077090 29076863 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1 exon 29077179 29077397 29077179 ID=MS.gene040581.t1.exon6;Parent=MS.gene040581.t1
chr2.1 CDS 29077179 29077397 29077179 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1 exon 29078094 29078354 29078094 ID=MS.gene040581.t1.exon7;Parent=MS.gene040581.t1
chr2.1 CDS 29078094 29078354 29078094 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
chr2.1 exon 29078623 29078931 29078623 ID=MS.gene040581.t1.exon8;Parent=MS.gene040581.t1
chr2.1 CDS 29078623 29078931 29078623 ID=cds.MS.gene040581.t1;Parent=MS.gene040581.t1
Gene Sequence

>MS.gene040581

ATGGCTCGGAGGGGGTTGATGGAACAAGACCTGAGTACGTTGGATGTCAACAAATTGCATCCGCTGTCTCCTGAAGTCATATCCCGTCAGGCTACTATCAATATTGGTAATATATATTTCAATATTTTTATAGGAACATGTTCAAATTTGCTGCAATTACATAACTAGAAATTCAAAAAAAGTTGTGTGCATTTTCGTCAATGGCTGTTGATGCTGATCGGTAATGAAATTTATCTTGGCAGGTACCATAGGTCATGTGGCACATGGAAAGTCAACGGTTGTGAAAGCAATATCAGGTGTTCAGGTATGTCCTTGTATCAAGTCATTCTCTACTTTTTTGGGGGTGTTTGGCTAAGGATAGCGGTGTTTAACTGTACATTATAATCTGTAAATGTGTAATTTGTGGTATATGGTATATGGAAATATCTAAATGATGGATCTATTTACACCAAGGTGAATTGTTTCAAACAGAAAGAAAGTATATAGCATTTAATCATTGTCATAACTCATCGCCTACAATTTATAATTTTCGAAATCCAAGTAGTGTTGGCATTGCCTTGAATTTATATTTTTCTCAATCCAATTACTAAGCGGGTACATGAAATTTGTGAAATCTTAGTTGTCATAAAATCATGACGTGTGCTTGTGCCTTGTTTCAATATATGAATTTTAGTGTGTCGTAGATACGCTGTGTAGTTAGCCGTCTCTCCAAAAATTGGTTCCTAGTGGTTACATAGTTGATTGATAATATTTAGATCAATTGAATTTTCTACTTTTTTTTTGCATTTTTAGTTTTGATAAAGGATTATAGATAACCATGATATATGTATTTTAGTTCATCTTCCTTGAGCTTTGATAATGTATAGTTAAACTGTTGACCTATGTTCTCCCATGAATGTTTTACAGACTGTGCGATTTAAAAATGAGTTGGAACGTAACATTACAATCAAGCTCGGTTATGCGAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATGTCCTACAAGTGGGTATTATTTTAGATTTGTCATTTTGGTATTAGGTCATTCATCTTTTGGTAACGTGATCAATTTTTTTCCCCCTTCCTGTAGGGCCTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGATGTACCTGGGTTTGAAAATTCCAAGATGAAATTGCTGAGACATGTTTCTTTTGTTGATTGCCCGGTAAGGTCCTGAACCATCATTTGTTATATAGGGTTGTTTTAGGCATAATTTCATAAGATTCTAGTATGATGTAGGGGGATATACTTTCATATTCTTGCACAATTGGTTTTATTTTACATTGGTTGCCCTCGTAATTGTTTGCTCTCCTTATCATATTATCTCTCAATTCTTTAATCCCTGGAAGATATGTGTATTTTAGTCCATGTATATGTACTATTAAATTAAACATATACCCCCAAGGCCTACTATGTAAGCCAATGCTTTCCCTCACCGAAGTTAATTTTTTTATGCAATTAAAGTGGTTTGCATTCAATGGTACGGAGTTAAAAGAATTATGGTGCTTTTTCGTATGGTGTGGGGTTTTTCATATAATGGGTATCATTTTTTGCCATCTATGCTATATTATTGAATACTTCTTTAGCTATTATTTTTTTTTTACATCTGTGATATTTGTTTTACTGTTCCAATTTCTGTAGGGACATGATATTCTCATGGCTACTATGCTTAACGGAGCAGCAATTATGGATGGAGCTTTGCTACTCATTGCAGCTAATGAAAGTTGCCCTCAACCACAAACTTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAACACATAATAATCCTTCAGAACAAGGTAGACTTGATTCAAGAAAATGTGGCTATCAACCAGCATGAAGCAATTCAGAAGTTTATACAAGTAAGTTTTCTATGAGGAGGTATAATTATACAAGTGAATCCTTTTGAACAACATAAATGATACTCCCCTTTTTTTGGTGTTTTCCCAGGGCACTGTTGCTGATAGTGCACCAGTAGTACCTATTTCAGCACAATTGAAGTATAATATTGATGTTGTGTGTGAGTACATCGTGAAAAAGATCCCAATCCCTGAACGGAACTTCATTTCTCCACCTAATATGATAGTAATTCGGTCATTTGATGTCAATAAACCTGGTTATGAAGTTGATGAAATAAAAGGAGGCGTAGCTGGTGGGAGTATTCTGAGGGTAAGTCTTTCTTTCTTTGGTCAATATGCCAAAAAGCATGTTTAATTTGCACTGACCTGACCTGCAGATGTTAGGTTCTGTGGTTTGATTGAACAATTTTCCATTTGCTGTTACCGTTTTTAATTGCAAGACTGCCTCGTTGTTTTCATTTTGTATCTTGTTTTCTGTACAAATATTTGAAAAAAGACAACAGTGAAAACAAGGGGAAGCTTTTGCAATTTAAATGAAAAGTGGAAATGAAAATATATATTTTCTCAAACCAAACAGGCTCTTAGCATTTCCAATTCTATTGCTGTTTGGAATGATTTTTGCCTTTACCAATGCCTTGATTTATAACATTTATTCTAGACTTTCAAAGTGTTGTGCAAATAATGTGAAGAACGTGCAATATGATACATGGATGCTCAATAAGTGAGAAAAAATGCCTTGTAATTTTTTACATCTTTCTTTCTTCCATAAAACCTTATGCATCCAAATTTTAGAATAACTTGATAGAAGGCTCCATATGCCATTCTATTTCCAAACAAGAAAATGGGACTTAACTCTGATGTTTTTTGTCTAAATCAATTGAATATGTTATGATCAATTTCCATTTCCAATTGGCTGAGACCATGTACCCGTTGATCATGAGCCATGTTTGGGGTTAGACATTTGACACATTCTTTTTAAGCACATCGTACAATTTATTATTTGCAGGGTGTTTTAAAGGTCAACCAATTCATTGAAGTTCGACCTGGAATAGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCGATCTACTCCAGAATAGTTTCACTATTTGCTGAACAAAATGAGCTTCAATTTGCCGTTCCTGGAGGCCTTATAGGTGTTGGAACCACAATGGATCCCACTTTGACACGTGCTGACAGGTTGGTAGGGCAAGTTCTTGGAGAGGTTGGATCACTGCCTGATGTTTTTGTGGAACTTGAGGTAAGTGACTACACCTACTTGTCTCTTGCAGTCTCGCTTGGTTTATCAATTCATAAGACAAATCAATCAGGATAAAGATTAACATGTCCATTTCTCTGAAGTCTTTAGATAATTTACACTTGGTACTAATTACAAATGGAGAGGATCTTTACCCCTAATTTAGTGTCAAGAGTGTTGATCTTTTTTCTGTTATGGCACTTAGTTCCCCCCTATTGTGCTGGAAAGGTATTTTTATTTTTTTTAATGAACTATGCACATGGTCTTGCAGGTAAACTTTTTCTTGCTTCGACGGCTTCTTGGTGTCCGGACAAAAGGTTCCGAGAGACAAGGAAAGGTCTCAAAGCTGACGAAAACAGAAATGCTAATGTTGAACATAGGATCAATGTCAACAGGTGCCAGAGTGGTAGCTGTGAAGAATGACTTGGCAAAGTTGCAACTTACTTCCCCTGTGTGCACCAGCAAGGGAGAGAAGATTGCTCTAAGTAGACGTGTTGAGAAGCATTGGCGTCTCATCGGTTGGGGCCAAATCCAAGCTGGTATCACCCTTGATGTTCCTCCTGCCCCCCTTCTGAGTTGA
Protein sequence

>MS.gene040581.t1

MARRGLMEQDLSTLDVNKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMSYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADSAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLTKTEMLMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPLLS