Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008754.t1 | XP_003608033.1 | 93.9 | 360 | 22 | 0 | 1 | 360 | 1 | 360 | 1.20E-193 | 685.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008754.t1 | Q9C566 | 74.4 | 360 | 92 | 0 | 1 | 360 | 1 | 360 | 4.6e-157 | 555.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008754.t1 | G7JMH6 | 93.9 | 360 | 22 | 0 | 1 | 360 | 1 | 360 | 8.7e-194 | 685.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene008754 | MS.gene60613 | PPI |
MS.gene008754 | MS.gene061126 | PPI |
MS.gene008754 | MS.gene07262 | PPI |
MS.gene008754 | MS.gene49154 | PPI |
MS.gene008754 | MS.gene006231 | PPI |
MS.gene008754 | MS.gene30654 | PPI |
MS.gene20783 | MS.gene008754 | PPI |
MS.gene008754 | MS.gene20834 | PPI |
MS.gene008754 | MS.gene040499 | PPI |
MS.gene008754 | MS.gene62607 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008754.t1 | MTR_4g086760 | 96.953 | 361 | 11 | 0 | 1 | 361 | 1 | 361 | 0.0 | 726 |
MS.gene008754.t1 | MTR_4g086760 | 96.687 | 332 | 11 | 0 | 1 | 332 | 1 | 332 | 0.0 | 670 |
MS.gene008754.t1 | MTR_4g086760 | 94.904 | 314 | 16 | 0 | 1 | 314 | 1 | 314 | 0.0 | 625 |
MS.gene008754.t1 | MTR_8g079690 | 74.515 | 361 | 91 | 1 | 1 | 361 | 1 | 360 | 0.0 | 570 |
MS.gene008754.t1 | MTR_7g095750 | 63.314 | 169 | 59 | 3 | 6 | 173 | 9 | 175 | 1.06e-69 | 230 |
MS.gene008754.t1 | MTR_4g075290 | 58.857 | 175 | 66 | 3 | 1 | 173 | 1 | 171 | 2.16e-65 | 205 |
MS.gene008754.t1 | MTR_7g116340 | 58.960 | 173 | 69 | 2 | 1 | 173 | 1 | 171 | 8.93e-65 | 203 |
MS.gene008754.t1 | MTR_3g117750 | 58.960 | 173 | 65 | 3 | 5 | 175 | 13 | 181 | 2.34e-64 | 203 |
MS.gene008754.t1 | MTR_3g463900 | 57.310 | 171 | 69 | 3 | 5 | 174 | 35 | 202 | 6.53e-62 | 197 |
MS.gene008754.t1 | MTR_7g110980 | 54.971 | 171 | 69 | 1 | 4 | 174 | 96 | 258 | 2.37e-60 | 195 |
MS.gene008754.t1 | MTR_4g073650 | 56.000 | 175 | 76 | 1 | 5 | 179 | 47 | 220 | 7.52e-60 | 192 |
MS.gene008754.t1 | MTR_3g070500 | 56.471 | 170 | 70 | 3 | 5 | 173 | 65 | 231 | 2.37e-59 | 192 |
MS.gene008754.t1 | MTR_1g085560 | 55.814 | 172 | 67 | 2 | 4 | 174 | 85 | 248 | 4.10e-59 | 192 |
MS.gene008754.t1 | MTR_1g117010 | 54.913 | 173 | 67 | 2 | 5 | 174 | 78 | 242 | 5.55e-58 | 188 |
MS.gene008754.t1 | MTR_1g117010 | 54.913 | 173 | 67 | 2 | 5 | 174 | 78 | 242 | 5.55e-58 | 188 |
MS.gene008754.t1 | MTR_8g040180 | 55.952 | 168 | 70 | 2 | 7 | 173 | 21 | 185 | 6.25e-58 | 186 |
MS.gene008754.t1 | MTR_3g107660 | 50.273 | 183 | 88 | 2 | 6 | 188 | 12 | 191 | 1.40e-50 | 181 |
MS.gene008754.t1 | MTR_1g011980 | 51.497 | 167 | 79 | 2 | 6 | 172 | 9 | 173 | 6.34e-49 | 176 |
MS.gene008754.t1 | MTR_3g070500 | 58.065 | 124 | 51 | 1 | 5 | 128 | 65 | 187 | 2.69e-46 | 156 |
MS.gene008754.t1 | MTR_8g036015 | 48.344 | 151 | 65 | 3 | 18 | 167 | 10 | 148 | 6.61e-39 | 136 |
MS.gene008754.t1 | MTR_2g085075 | 49.351 | 154 | 65 | 3 | 18 | 170 | 471 | 612 | 8.81e-38 | 143 |
MS.gene008754.t1 | MTR_7g105220 | 46.711 | 152 | 68 | 4 | 18 | 168 | 19 | 158 | 4.54e-37 | 132 |
MS.gene008754.t1 | MTR_3g070500 | 57.292 | 96 | 40 | 1 | 5 | 100 | 65 | 159 | 3.09e-33 | 122 |
MS.gene008754.t1 | MTR_3g070500 | 56.000 | 100 | 43 | 1 | 5 | 104 | 65 | 163 | 4.28e-33 | 121 |
MS.gene008754.t1 | MTR_5g015500 | 43.791 | 153 | 73 | 4 | 17 | 168 | 313 | 453 | 1.92e-32 | 127 |
MS.gene008754.t1 | MTR_5g015500 | 43.791 | 153 | 73 | 4 | 17 | 168 | 353 | 493 | 2.57e-32 | 127 |
MS.gene008754.t1 | MTR_3g085705 | 46.875 | 96 | 47 | 2 | 56 | 151 | 24 | 115 | 5.96e-20 | 85.1 |
MS.gene008754.t1 | MTR_2g023120 | 35.326 | 184 | 96 | 6 | 18 | 190 | 22 | 193 | 1.64e-18 | 87.0 |
MS.gene008754.t1 | MTR_1g094065 | 36.774 | 155 | 79 | 7 | 17 | 170 | 88 | 224 | 8.88e-17 | 79.0 |
MS.gene008754.t1 | MTR_6g084140 | 30.818 | 159 | 89 | 4 | 18 | 167 | 27 | 173 | 1.19e-16 | 81.6 |
MS.gene008754.t1 | MTR_6g084140 | 30.818 | 159 | 89 | 4 | 18 | 167 | 10 | 156 | 1.21e-16 | 81.6 |
MS.gene008754.t1 | MTR_8g442420 | 30.189 | 159 | 90 | 4 | 18 | 167 | 10 | 156 | 1.99e-15 | 77.8 |
MS.gene008754.t1 | MTR_8g012340 | 33.566 | 143 | 92 | 2 | 219 | 361 | 409 | 548 | 1.17e-14 | 75.5 |
MS.gene008754.t1 | MTR_1g035360 | 33.117 | 154 | 87 | 4 | 17 | 170 | 87 | 224 | 1.19e-14 | 72.8 |
MS.gene008754.t1 | MTR_8g080980 | 30.435 | 161 | 103 | 3 | 207 | 361 | 387 | 544 | 7.16e-13 | 70.1 |
MS.gene008754.t1 | MTR_7g053470 | 33.113 | 151 | 84 | 5 | 219 | 362 | 401 | 541 | 2.43e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008754.t1 | AT2G15790 | 77.778 | 360 | 80 | 0 | 1 | 360 | 1 | 360 | 0.0 | 594 |
MS.gene008754.t1 | AT3G63400 | 65.294 | 170 | 58 | 1 | 6 | 175 | 9 | 177 | 1.78e-73 | 233 |
MS.gene008754.t1 | AT3G63400 | 66.071 | 168 | 56 | 1 | 6 | 173 | 9 | 175 | 8.59e-72 | 234 |
MS.gene008754.t1 | AT3G63400 | 66.071 | 168 | 56 | 1 | 6 | 173 | 9 | 175 | 8.59e-72 | 234 |
MS.gene008754.t1 | AT3G63400 | 66.071 | 168 | 56 | 1 | 6 | 173 | 9 | 175 | 8.59e-72 | 234 |
MS.gene008754.t1 | AT2G21130 | 61.538 | 169 | 63 | 2 | 5 | 173 | 6 | 172 | 1.15e-67 | 211 |
MS.gene008754.t1 | AT4G38740 | 59.538 | 173 | 68 | 2 | 1 | 173 | 1 | 171 | 5.30e-67 | 209 |
MS.gene008754.t1 | AT3G56070 | 59.538 | 173 | 68 | 2 | 1 | 173 | 1 | 171 | 3.60e-66 | 207 |
MS.gene008754.t1 | AT3G56070 | 59.538 | 173 | 68 | 2 | 1 | 173 | 1 | 171 | 3.60e-66 | 207 |
MS.gene008754.t1 | AT4G34870 | 60.116 | 173 | 67 | 2 | 1 | 173 | 1 | 171 | 1.36e-65 | 206 |
MS.gene008754.t1 | AT2G16600 | 60.234 | 171 | 62 | 3 | 5 | 173 | 6 | 172 | 1.52e-65 | 206 |
MS.gene008754.t1 | AT3G55920 | 59.412 | 170 | 65 | 3 | 5 | 173 | 60 | 226 | 4.76e-63 | 201 |
MS.gene008754.t1 | AT5G13120 | 55.114 | 176 | 68 | 2 | 5 | 177 | 91 | 258 | 3.41e-61 | 197 |
MS.gene008754.t1 | AT5G13120 | 55.114 | 176 | 68 | 2 | 5 | 177 | 87 | 254 | 4.50e-61 | 197 |
MS.gene008754.t1 | AT3G62030 | 55.882 | 170 | 67 | 1 | 5 | 174 | 96 | 257 | 4.91e-61 | 197 |
MS.gene008754.t1 | AT3G62030 | 55.882 | 170 | 67 | 1 | 5 | 174 | 95 | 256 | 5.97e-61 | 197 |
MS.gene008754.t1 | AT2G29960 | 56.725 | 171 | 70 | 3 | 5 | 174 | 33 | 200 | 8.83e-61 | 194 |
MS.gene008754.t1 | AT2G29960 | 56.725 | 171 | 70 | 3 | 5 | 174 | 33 | 200 | 8.83e-61 | 194 |
MS.gene008754.t1 | AT3G62030 | 55.882 | 170 | 67 | 1 | 5 | 174 | 149 | 310 | 1.77e-60 | 197 |
MS.gene008754.t1 | AT5G58710 | 56.725 | 171 | 70 | 3 | 5 | 174 | 36 | 203 | 1.13e-59 | 191 |
MS.gene008754.t1 | AT4G34960 | 54.386 | 171 | 77 | 1 | 5 | 175 | 48 | 217 | 1.53e-58 | 189 |
MS.gene008754.t1 | AT2G29960 | 54.386 | 171 | 64 | 4 | 5 | 174 | 33 | 190 | 1.36e-55 | 181 |
MS.gene008754.t1 | AT2G38730 | 54.762 | 168 | 72 | 2 | 7 | 173 | 35 | 199 | 1.74e-53 | 175 |
MS.gene008754.t1 | AT2G16600 | 52.632 | 171 | 53 | 3 | 5 | 173 | 6 | 150 | 1.49e-51 | 169 |
MS.gene008754.t1 | AT4G34960 | 57.258 | 124 | 52 | 1 | 5 | 128 | 48 | 170 | 5.27e-46 | 155 |
MS.gene008754.t1 | AT4G32420 | 48.214 | 168 | 84 | 2 | 6 | 172 | 9 | 174 | 8.28e-46 | 167 |
MS.gene008754.t1 | AT4G32420 | 48.214 | 168 | 84 | 2 | 6 | 172 | 9 | 174 | 8.28e-46 | 167 |
MS.gene008754.t1 | AT4G32420 | 48.214 | 168 | 84 | 2 | 6 | 172 | 9 | 174 | 8.28e-46 | 167 |
MS.gene008754.t1 | AT4G32420 | 48.214 | 168 | 84 | 2 | 6 | 172 | 9 | 174 | 8.28e-46 | 167 |
MS.gene008754.t1 | AT4G32420 | 47.403 | 154 | 79 | 1 | 6 | 159 | 9 | 160 | 8.41e-41 | 153 |
MS.gene008754.t1 | AT3G44600 | 50.649 | 154 | 63 | 3 | 18 | 170 | 485 | 626 | 1.31e-38 | 145 |
MS.gene008754.t1 | AT1G01940 | 47.020 | 151 | 67 | 3 | 18 | 167 | 10 | 148 | 1.49e-38 | 135 |
MS.gene008754.t1 | AT2G36130 | 47.368 | 152 | 67 | 4 | 18 | 168 | 19 | 158 | 3.46e-37 | 132 |
MS.gene008754.t1 | AT3G22920 | 42.614 | 176 | 89 | 6 | 1 | 173 | 1 | 167 | 3.08e-33 | 124 |
MS.gene008754.t1 | AT5G67530 | 41.139 | 158 | 80 | 4 | 14 | 170 | 349 | 494 | 4.76e-33 | 130 |
MS.gene008754.t1 | AT4G33060 | 38.514 | 148 | 76 | 5 | 18 | 162 | 22 | 157 | 2.79e-22 | 98.2 |
MS.gene008754.t1 | AT1G53720 | 30.189 | 159 | 90 | 4 | 18 | 167 | 10 | 156 | 7.19e-18 | 84.3 |
MS.gene008754.t1 | AT1G53720 | 30.189 | 159 | 90 | 4 | 18 | 167 | 10 | 156 | 8.42e-17 | 82.0 |
MS.gene008754.t1 | AT3G25230 | 29.714 | 175 | 113 | 2 | 194 | 361 | 375 | 546 | 1.41e-14 | 75.5 |
MS.gene008754.t1 | AT3G25230 | 29.714 | 175 | 113 | 2 | 194 | 361 | 375 | 546 | 1.52e-14 | 75.1 |
MS.gene008754.t1 | AT2G47320 | 29.870 | 154 | 93 | 4 | 17 | 170 | 86 | 224 | 2.46e-13 | 69.3 |
MS.gene008754.t1 | AT5G48570 | 29.371 | 143 | 98 | 1 | 219 | 361 | 417 | 556 | 2.48e-12 | 68.6 |
MS.gene008754.t1 | AT1G58450 | 33.333 | 156 | 78 | 7 | 219 | 363 | 17 | 157 | 5.11e-11 | 61.2 |
Find 83 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGGTAAGCATGTTGTATT+TGG | 0.164027 | 4.4:+25700425 | MS.gene008754:CDS |
TGCTTTCATCGTGTTGTTAA+AGG | 0.200563 | 4.4:+25700212 | MS.gene008754:CDS |
CAGGCTTGTAAATTGAAAAT+AGG | 0.228821 | 4.4:+25701151 | MS.gene008754:intron |
GTTGACTCAATCAAAGCTTT+TGG | 0.281914 | 4.4:+25700668 | MS.gene008754:CDS |
AAAGGCATTGCTCCCAATAC+TGG | 0.290483 | 4.4:+25698812 | MS.gene008754:CDS |
GCTTTATGTACTGGTGAAAA+AGG | 0.323112 | 4.4:+25698794 | MS.gene008754:CDS |
GTATTTGGGAAAGTAGTTAA+AGG | 0.327975 | 4.4:+25700440 | MS.gene008754:CDS |
AACTGAGAACCATTTGTATT+AGG | 0.329429 | 4.4:-25700371 | None:intergenic |
AAGATTACAAAATGGCTCTA+AGG | 0.372932 | 4.4:+25700799 | MS.gene008754:CDS |
ATGCCATCATCTTCTCCTTC+GGG | 0.380950 | 4.4:-25700554 | None:intergenic |
GGGTTTGCAGAGAAAAGTTC+AGG | 0.381476 | 4.4:+25700990 | MS.gene008754:intron |
TATGCCATCATCTTCTCCTT+CGG | 0.385372 | 4.4:-25700555 | None:intergenic |
ACTGGAGGAGAATCTATATA+TGG | 0.394055 | 4.4:+25700275 | MS.gene008754:CDS |
GGCAAGGTCTGCAGGCCAAT+CGG | 0.395413 | 4.4:-25700609 | None:intergenic |
CCTTCTCCCAACAAATATCT+AGG | 0.395609 | 4.4:-25700845 | None:intergenic |
TACGTTACCTAGATATTTGT+TGG | 0.398707 | 4.4:+25700838 | MS.gene008754:CDS |
TTGAAAATAGGAGATGTTAA+AGG | 0.404212 | 4.4:+25701163 | MS.gene008754:CDS |
CATAACAACTAACCATCATT+TGG | 0.407057 | 4.4:-25701465 | None:intergenic |
ACAGAAACAAGATTACAAAA+TGG | 0.408202 | 4.4:+25700791 | MS.gene008754:intron |
TGGAGGGGTACCCCAGTATT+GGG | 0.413728 | 4.4:-25698824 | None:intergenic |
GGGATCTCGGCAAGGTCTGC+AGG | 0.419859 | 4.4:-25700617 | None:intergenic |
GTTTGTTGCAGATATCTGAT+AGG | 0.423253 | 4.4:+25701860 | MS.gene008754:intron |
AGATGCACTCACCTTCTTCC+TGG | 0.426622 | 4.4:-25701784 | None:intergenic |
AATTTCAGAGCTTTATGTAC+TGG | 0.442340 | 4.4:+25698785 | MS.gene008754:CDS |
AACAGGACGGTCTTCGTCTC+CGG | 0.443387 | 4.4:-25700498 | None:intergenic |
ATGGTAAGCATGTTGTATTT+GGG | 0.444699 | 4.4:+25700426 | MS.gene008754:CDS |
CTTTAAGAAGGCACTGACCT+TGG | 0.457066 | 4.4:+25701440 | MS.gene008754:CDS |
ACACGAACTGCTCATCTAGA+TGG | 0.458834 | 4.4:+25700407 | MS.gene008754:CDS |
TCCATTTCACTAGGCATACA+TGG | 0.468241 | 4.4:+25701386 | MS.gene008754:intron |
ATGGAGGGGTACCCCAGTAT+TGG | 0.470580 | 4.4:-25698825 | None:intergenic |
CAACCACCAGTCAAGTTCAC+TGG | 0.471787 | 4.4:-25700639 | None:intergenic |
ATATCTGCTGGAGATGGTAC+TGG | 0.476194 | 4.4:+25700257 | MS.gene008754:CDS |
AGCTTTGTTTCGCCAAGGAC+AGG | 0.477436 | 4.4:+25701237 | MS.gene008754:CDS |
GTCAAGTTCACTGGGGATCT+CGG | 0.478450 | 4.4:-25700630 | None:intergenic |
ACGTTACCTAGATATTTGTT+GGG | 0.481777 | 4.4:+25700839 | MS.gene008754:CDS |
GGGAAAGTAGTTAAAGGAAT+GGG | 0.490146 | 4.4:+25700446 | MS.gene008754:CDS |
GTTAAAGGCGCTATGATTGA+AGG | 0.496072 | 4.4:+25700227 | MS.gene008754:CDS |
TCAATTGAGCACGTTGCGAC+CGG | 0.496798 | 4.4:+25700479 | MS.gene008754:CDS |
AAATGAAGCATGAAAGGAAA+GGG | 0.497023 | 4.4:+25700324 | MS.gene008754:CDS |
AGCATAGGTGAAGAACTAGA+AGG | 0.500116 | 4.4:+25698713 | MS.gene008754:CDS |
CCTAGATATTTGTTGGGAGA+AGG | 0.500762 | 4.4:+25700845 | MS.gene008754:CDS |
AAGGCATTGCTCCCAATACT+GGG | 0.502453 | 4.4:+25698813 | MS.gene008754:CDS |
GCAAGGTCTGCAGGCCAATC+GGG | 0.505929 | 4.4:-25700608 | None:intergenic |
TGCAGTTGAAAGCTTTAAGA+AGG | 0.510440 | 4.4:+25701428 | MS.gene008754:CDS |
TGTTGTTGATGTTAAAATTG+TGG | 0.512036 | 4.4:+25700517 | MS.gene008754:CDS |
ACTAGCTGCGGCCAGGAAGA+AGG | 0.516262 | 4.4:+25701773 | MS.gene008754:CDS |
TAGCCATACCAACCTGTCCT+TGG | 0.517941 | 4.4:-25701249 | None:intergenic |
AGATGTTAAAGGAGCACTGT+TGG | 0.519974 | 4.4:+25701174 | MS.gene008754:CDS |
AGAACTAGAAGGAAGAATAT+TGG | 0.521379 | 4.4:+25698724 | MS.gene008754:CDS |
AACACCGGTCCTAATACAAA+TGG | 0.522911 | 4.4:+25700362 | MS.gene008754:CDS |
AAAAGGAACTAGCTGCGGCC+AGG | 0.525433 | 4.4:+25701766 | MS.gene008754:CDS |
ATATTTGTTGGGAGAAGGAA+GGG | 0.525523 | 4.4:+25700850 | MS.gene008754:CDS |
TGGGAAAGTAGTTAAAGGAA+TGG | 0.530752 | 4.4:+25700445 | MS.gene008754:CDS |
AACCACCAGTCAAGTTCACT+GGG | 0.537285 | 4.4:-25700638 | None:intergenic |
GAAGGAGGTGATATATCTGC+TGG | 0.541862 | 4.4:+25700245 | MS.gene008754:CDS |
CTAACCATCATTTGGCTCCA+AGG | 0.542156 | 4.4:-25701457 | None:intergenic |
AGAGAGTACCTTAAAATGGA+GGG | 0.554528 | 4.4:-25698840 | None:intergenic |
CTGACCTTGGAGCCAAATGA+TGG | 0.557339 | 4.4:+25701453 | MS.gene008754:CDS |
AGATCCCCAGTGAACTTGAC+TGG | 0.557403 | 4.4:+25700633 | MS.gene008754:CDS |
GAAATGAAGCATGAAAGGAA+AGG | 0.564179 | 4.4:+25700323 | MS.gene008754:CDS |
GCAAAAGCTTTGTTTCGCCA+AGG | 0.564247 | 4.4:+25701232 | MS.gene008754:CDS |
GATATTTGTTGGGAGAAGGA+AGG | 0.565739 | 4.4:+25700849 | MS.gene008754:CDS |
GAGAAGGAAGGGATTGATGA+AGG | 0.568956 | 4.4:+25700861 | MS.gene008754:CDS |
AAGGAAAGGGATGCTATCAA+TGG | 0.570871 | 4.4:+25700337 | MS.gene008754:CDS |
AGAACCATTTGTATTAGGAC+CGG | 0.574306 | 4.4:-25700366 | None:intergenic |
GGTGATATATCTGCTGGAGA+TGG | 0.574675 | 4.4:+25700251 | MS.gene008754:CDS |
AAGAGAGTACCTTAAAATGG+AGG | 0.574768 | 4.4:-25698841 | None:intergenic |
GGCTCTAAGGAAGTATCGAA+AGG | 0.578118 | 4.4:+25700812 | MS.gene008754:CDS |
ATGGTGATACTTATCCCGAT+TGG | 0.587040 | 4.4:+25700594 | MS.gene008754:CDS |
GATGTTAAAATTGTGGATTG+TGG | 0.596237 | 4.4:+25700524 | MS.gene008754:CDS |
ATTCCCGAAGGAGAAGATGA+TGG | 0.607865 | 4.4:+25700551 | MS.gene008754:CDS |
GTTCACTGGGGATCTCGGCA+AGG | 0.615156 | 4.4:-25700625 | None:intergenic |
TCGCAACGTGCTCAATTGAA+CGG | 0.615313 | 4.4:-25700475 | None:intergenic |
ACAGAATTTGCAATGCGTGA+AGG | 0.623388 | 4.4:+25701199 | MS.gene008754:CDS |
TGCTTCTTAGACATTAGCAT+AGG | 0.626297 | 4.4:+25698698 | MS.gene008754:CDS |
TCTGCTGGAGATGGTACTGG+AGG | 0.662046 | 4.4:+25700260 | MS.gene008754:CDS |
GAGAGTACCTTAAAATGGAG+GGG | 0.666958 | 4.4:-25698839 | None:intergenic |
ATGCTATCAATGGCAAACAC+CGG | 0.676783 | 4.4:+25700347 | MS.gene008754:CDS |
AAAGGCGCTATGATTGAAGG+AGG | 0.683125 | 4.4:+25700230 | MS.gene008754:CDS |
TCCCCAGTGAACTTGACTGG+TGG | 0.698905 | 4.4:+25700636 | MS.gene008754:CDS |
GATTGTGGAGAAATTCCCGA+AGG | 0.703557 | 4.4:+25700539 | MS.gene008754:CDS |
AGGCATTGCTCCCAATACTG+GGG | 0.727328 | 4.4:+25698814 | MS.gene008754:CDS |
ACCACCAGTCAAGTTCACTG+GGG | 0.804679 | 4.4:-25700637 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGTAACATAATTTATATAA+TGG | - | chr4.4:25699898-25699917 | None:intergenic | 10.0% |
!! | TTAAAAATAAAGATATGAAA+CGG | - | chr4.4:25699819-25699838 | None:intergenic | 10.0% |
!! | TTGATTATATTAATTAGTAA+AGG | - | chr4.4:25699153-25699172 | None:intergenic | 10.0% |
!!! | TTTATATATATTTTGTTTGA+TGG | - | chr4.4:25699960-25699979 | None:intergenic | 10.0% |
!! | AAATGATGTAATCTAAAAAT+TGG | + | chr4.4:25701652-25701671 | MS.gene008754:intron | 15.0% |
!! | TAAAAATAAAGATATGAAAC+GGG | - | chr4.4:25699818-25699837 | None:intergenic | 15.0% |
!! | TAAACATTTAATTCATATCT+CGG | - | chr4.4:25700755-25700774 | None:intergenic | 15.0% |
!! | TATTGTAACTCAAATATATT+TGG | + | chr4.4:25699991-25700010 | MS.gene008754:intron | 15.0% |
!!! | AAAAGTATATACTTTTGATA+TGG | + | chr4.4:25699642-25699661 | MS.gene008754:intron | 15.0% |
!!! | AATTTTTAGATTACATCATT+TGG | - | chr4.4:25701653-25701672 | None:intergenic | 15.0% |
!!! | TACTGATTTTATTTTTTTAC+AGG | + | chr4.4:25701132-25701151 | MS.gene008754:intron | 15.0% |
!!! | TTTGTTGTAATCTAAAAAAA+GGG | + | chr4.4:25698989-25699008 | MS.gene008754:intron | 15.0% |
!! | AATCATCAAAGAATGAATAA+AGG | - | chr4.4:25699322-25699341 | None:intergenic | 20.0% |
!! | AATTGAATAAAAAACGATGA+TGG | - | chr4.4:25698879-25698898 | None:intergenic | 20.0% |
!! | ACAAATGTTAGATATTTATG+TGG | + | chr4.4:25699778-25699797 | MS.gene008754:intron | 20.0% |
!! | ACTGTTCAGATAAATTTAAA+GGG | + | chr4.4:25701075-25701094 | MS.gene008754:intron | 20.0% |
!! | ATTGAATAAAAAACGATGAT+GGG | - | chr4.4:25698878-25698897 | None:intergenic | 20.0% |
!! | TAGAGCTAATTTCATATATT+AGG | - | chr4.4:25700725-25700744 | None:intergenic | 20.0% |
!! | TCTAAAAGTTTCTTCTTTAT+TGG | + | chr4.4:25699092-25699111 | MS.gene008754:intron | 20.0% |
!! | TGTTACTATATATCTATACA+TGG | + | chr4.4:25699910-25699929 | MS.gene008754:intron | 20.0% |
!!! | AAAGGGAATAATAATCTTTT+CGG | - | chr4.4:25699041-25699060 | None:intergenic | 20.0% |
!!! | AATTTTTATGCACTTGTATA+TGG | + | chr4.4:25701692-25701711 | MS.gene008754:intron | 20.0% |
!!! | ACATTTAGGATATATTTACA+AGG | + | chr4.4:25699619-25699638 | MS.gene008754:intron | 20.0% |
!!! | ATAACAAACTTTTTCAAAGA+TGG | + | chr4.4:25700575-25700594 | MS.gene008754:CDS | 20.0% |
!!! | ATGATAAGTAGGTTTATTTT+TGG | + | chr4.4:25700969-25700988 | MS.gene008754:intron | 20.0% |
!!! | CTTTGTTGTAATCTAAAAAA+AGG | + | chr4.4:25698988-25699007 | MS.gene008754:intron | 20.0% |
!!! | GCTAATTTAAAAGTTTTGAT+TGG | + | chr4.4:25699183-25699202 | MS.gene008754:intron | 20.0% |
!!! | TCTTTAGAAAAAACACAATA+TGG | - | chr4.4:25700100-25700119 | None:intergenic | 20.0% |
!!! | TGATAAGTAGGTTTATTTTT+GGG | + | chr4.4:25700970-25700989 | MS.gene008754:intron | 20.0% |
!!! | TTGTTATGAACATACTATTT+TGG | + | chr4.4:25701480-25701499 | MS.gene008754:intron | 20.0% |
! | AAAAGTTTCTTCTTTATTGG+TGG | + | chr4.4:25699095-25699114 | MS.gene008754:intron | 25.0% |
! | AATCAAAACAGAACAAACAA+AGG | - | chr4.4:25698936-25698955 | None:intergenic | 25.0% |
! | ACAGAAACAAGATTACAAAA+TGG | + | chr4.4:25700791-25700810 | MS.gene008754:intron | 25.0% |
! | ACAGCAATCAAAAGAATAAA+GGG | - | chr4.4:25699058-25699077 | None:intergenic | 25.0% |
! | ACATCAAAGTCAGTTAATAT+AGG | - | chr4.4:25701103-25701122 | None:intergenic | 25.0% |
! | ATGTTTAGCTGGAATAAAAA+AGG | + | chr4.4:25701749-25701768 | MS.gene008754:intron | 25.0% |
! | ATTGACATTTGAGCTAATAT+AGG | - | chr4.4:25700150-25700169 | None:intergenic | 25.0% |
! | CAACAAAATGTTATAAGGTT+CGG | - | chr4.4:25701727-25701746 | None:intergenic | 25.0% |
! | CACTGTTCAGATAAATTTAA+AGG | + | chr4.4:25701074-25701093 | MS.gene008754:intron | 25.0% |
! | CATTGCAACAAAATGTTATA+AGG | - | chr4.4:25701732-25701751 | None:intergenic | 25.0% |
! | GTGAAATAAATAGTAGCAAA+AGG | - | chr4.4:25700894-25700913 | None:intergenic | 25.0% |
! | TCAGAGAAAAAAAAAAAAGC+AGG | - | chr4.4:25701353-25701372 | None:intergenic | 25.0% |
! | TCATAACATAATGAAGAACA+AGG | - | chr4.4:25699279-25699298 | None:intergenic | 25.0% |
! | TGTTGTTGATGTTAAAATTG+TGG | + | chr4.4:25700517-25700536 | MS.gene008754:CDS | 25.0% |
! | TTCATATCATGAACAAACTT+AGG | - | chr4.4:25700075-25700094 | None:intergenic | 25.0% |
! | TTGAAAATAGGAGATGTTAA+AGG | + | chr4.4:25701163-25701182 | MS.gene008754:CDS | 25.0% |
!! | AATAATCTTTTCGGAATTGA+TGG | - | chr4.4:25699032-25699051 | None:intergenic | 25.0% |
!!! | AAAAAGAGAGTACCTTAAAA+TGG | - | chr4.4:25698847-25698866 | None:intergenic | 25.0% |
!!! | AAAGTTTTGATTGGTACATT+TGG | + | chr4.4:25699192-25699211 | MS.gene008754:intron | 25.0% |
!!! | AAGTTTTGATTGGTACATTT+GGG | + | chr4.4:25699193-25699212 | MS.gene008754:intron | 25.0% |
!!! | ACAATTTTAACATCAACAAC+AGG | - | chr4.4:25700518-25700537 | None:intergenic | 25.0% |
!!! | ATATGCTGTTGTTATTTTCA+GGG | + | chr4.4:25700185-25700204 | MS.gene008754:intron | 25.0% |
!!! | ATTTTGAAATGAAGCATGAA+AGG | + | chr4.4:25700318-25700337 | MS.gene008754:CDS | 25.0% |
!!! | TATATGCTGTTGTTATTTTC+AGG | + | chr4.4:25700184-25700203 | MS.gene008754:intron | 25.0% |
AAAAGGGTTGAACTTGAATT+TGG | + | chr4.4:25699005-25699024 | MS.gene008754:intron | 30.0% | |
AAATGAAGCATGAAAGGAAA+GGG | + | chr4.4:25700324-25700343 | MS.gene008754:CDS | 30.0% | |
AACTGAGAACCATTTGTATT+AGG | - | chr4.4:25700374-25700393 | None:intergenic | 30.0% | |
AAGCATTATGTATACTTCTC+TGG | + | chr4.4:25701822-25701841 | MS.gene008754:intron | 30.0% | |
AATAAAAAAGGAACTAGCTG+CGG | + | chr4.4:25701761-25701780 | MS.gene008754:CDS | 30.0% | |
ACGTTACCTAGATATTTGTT+GGG | + | chr4.4:25700839-25700858 | MS.gene008754:CDS | 30.0% | |
AGAACTAGAAGGAAGAATAT+TGG | + | chr4.4:25698724-25698743 | MS.gene008754:CDS | 30.0% | |
ATGGTAAGCATGTTGTATTT+GGG | + | chr4.4:25700426-25700445 | MS.gene008754:CDS | 30.0% | |
CACAGCAATCAAAAGAATAA+AGG | - | chr4.4:25699059-25699078 | None:intergenic | 30.0% | |
CAGGCTTGTAAATTGAAAAT+AGG | + | chr4.4:25701151-25701170 | MS.gene008754:intron | 30.0% | |
CATAACAACTAACCATCATT+TGG | - | chr4.4:25701468-25701487 | None:intergenic | 30.0% | |
CATGAACAAACTTAGGAATT+TGG | - | chr4.4:25700068-25700087 | None:intergenic | 30.0% | |
CGAAAAAAAGAGTCTTTGAT+AGG | - | chr4.4:25698913-25698932 | None:intergenic | 30.0% | |
GAAGATGGAATCGTTAAAAT+TGG | + | chr4.4:25699490-25699509 | MS.gene008754:intron | 30.0% | |
GTAAACGATACATTTGATGA+TGG | + | chr4.4:25699381-25699400 | MS.gene008754:intron | 30.0% | |
GTATTTGGGAAAGTAGTTAA+AGG | + | chr4.4:25700440-25700459 | MS.gene008754:CDS | 30.0% | |
TAAGCAATTGAACATAGTCA+AGG | + | chr4.4:25699531-25699550 | MS.gene008754:intron | 30.0% | |
TACGTTACCTAGATATTTGT+TGG | + | chr4.4:25700838-25700857 | MS.gene008754:CDS | 30.0% | |
TATCTTACTTCCATTTCACT+AGG | + | chr4.4:25701377-25701396 | MS.gene008754:intron | 30.0% | |
TGGATGATAGAATGAGAAAT+GGG | + | chr4.4:25699468-25699487 | MS.gene008754:intron | 30.0% | |
TTAGCTCAAATGTCAATCAT+TGG | + | chr4.4:25700153-25700172 | MS.gene008754:intron | 30.0% | |
TTGGGGAAAAAAACACATTT+AGG | + | chr4.4:25699605-25699624 | MS.gene008754:intron | 30.0% | |
! | AAGATTACAAAATGGCTCTA+AGG | + | chr4.4:25700799-25700818 | MS.gene008754:CDS | 30.0% |
! | AATTTCAGAGCTTTATGTAC+TGG | + | chr4.4:25698785-25698804 | MS.gene008754:CDS | 30.0% |
! | ATTTTGTTGCAATGTTTAGC+TGG | + | chr4.4:25701738-25701757 | MS.gene008754:intron | 30.0% |
! | CTGAAATTTTCAGCAGTTTT+GGG | - | chr4.4:25698773-25698792 | None:intergenic | 30.0% |
! | GATGTTAAAATTGTGGATTG+TGG | + | chr4.4:25700524-25700543 | MS.gene008754:CDS | 30.0% |
! | TTTTAACATCAACAACAGGA+CGG | - | chr4.4:25700514-25700533 | None:intergenic | 30.0% |
!! | AAGAGCTTTGAATCATCATA+TGG | + | chr4.4:25701275-25701294 | MS.gene008754:intron | 30.0% |
!! | ACATTTTGACATTCATTGGT+TGG | + | chr4.4:25699586-25699605 | MS.gene008754:intron | 30.0% |
!! | ATTTTGACATTCATTGGTTG+GGG | + | chr4.4:25699588-25699607 | MS.gene008754:intron | 30.0% |
!! | CATTTTGACATTCATTGGTT+GGG | + | chr4.4:25699587-25699606 | MS.gene008754:intron | 30.0% |
!! | TATTTTGGATCAAACCTTTG+CGG | + | chr4.4:25701495-25701514 | MS.gene008754:intron | 30.0% |
!! | TCTGAAATTTTCAGCAGTTT+TGG | - | chr4.4:25698774-25698793 | None:intergenic | 30.0% |
!! | TGTGACATTTTGACATTCAT+TGG | + | chr4.4:25699582-25699601 | MS.gene008754:intron | 30.0% |
!! | TTTGTAATCTTGTTTCTGTC+AGG | - | chr4.4:25700790-25700809 | None:intergenic | 30.0% |
AACCTACTTATCATGTGCAA+AGG | - | chr4.4:25700963-25700982 | None:intergenic | 35.0% | |
ACAAGTTTGCGAGATATTAG+TGG | + | chr4.4:25699354-25699373 | MS.gene008754:intron | 35.0% | |
ACTGGAGGAGAATCTATATA+TGG | + | chr4.4:25700275-25700294 | MS.gene008754:CDS | 35.0% | |
AGAACCATTTGTATTAGGAC+CGG | - | chr4.4:25700369-25700388 | None:intergenic | 35.0% | |
ATCCTTTGCACATGATAAGT+AGG | + | chr4.4:25700958-25700977 | MS.gene008754:intron | 35.0% | |
CAATTAGACAGAAGCTATGT+TGG | + | chr4.4:25699443-25699462 | MS.gene008754:intron | 35.0% | |
GAAATGAAGCATGAAAGGAA+AGG | + | chr4.4:25700323-25700342 | MS.gene008754:CDS | 35.0% | |
GATGGTAAGCATGTTGTATT+TGG | + | chr4.4:25700425-25700444 | MS.gene008754:CDS | 35.0% | |
GGGAAAGTAGTTAAAGGAAT+GGG | + | chr4.4:25700446-25700465 | MS.gene008754:CDS | 35.0% | |
GTGGATGATAGAATGAGAAA+TGG | + | chr4.4:25699467-25699486 | MS.gene008754:intron | 35.0% | |
TAGAAGCCTGACATAGTAAA+GGG | - | chr4.4:25701310-25701329 | None:intergenic | 35.0% | |
TAGAATGAGAAATGGGAAGA+TGG | + | chr4.4:25699475-25699494 | MS.gene008754:intron | 35.0% | |
TGCTTCTTAGACATTAGCAT+AGG | + | chr4.4:25698698-25698717 | MS.gene008754:CDS | 35.0% | |
TGGGAAAGTAGTTAAAGGAA+TGG | + | chr4.4:25700445-25700464 | MS.gene008754:CDS | 35.0% | |
TTACAAACAGCTCAGTAAGT+TGG | + | chr4.4:25701039-25701058 | MS.gene008754:intron | 35.0% | |
! | ATATTTGTTGGGAGAAGGAA+GGG | + | chr4.4:25700850-25700869 | MS.gene008754:CDS | 35.0% |
! | GCTTTATGTACTGGTGAAAA+AGG | + | chr4.4:25698794-25698813 | MS.gene008754:CDS | 35.0% |
! | GGATACCTTTTGGATACTTT+GGG | + | chr4.4:25699214-25699233 | MS.gene008754:intron | 35.0% |
! | GTTTGTTGCAGATATCTGAT+AGG | + | chr4.4:25701860-25701879 | MS.gene008754:intron | 35.0% |
! | TGCTTTCATCGTGTTGTTAA+AGG | + | chr4.4:25700212-25700231 | MS.gene008754:CDS | 35.0% |
! | TGTATCCCAAAGTATCCAAA+AGG | - | chr4.4:25699222-25699241 | None:intergenic | 35.0% |
! | TTTTGGCAATGAGTGTTACA+AGG | + | chr4.4:25700685-25700704 | MS.gene008754:CDS | 35.0% |
!! | AACGATACATTTGATGATGG+CGG | + | chr4.4:25699384-25699403 | MS.gene008754:intron | 35.0% |
!! | AAGAGAGTACCTTAAAATGG+AGG | - | chr4.4:25698844-25698863 | None:intergenic | 35.0% |
!! | AGAGAGTACCTTAAAATGGA+GGG | - | chr4.4:25698843-25698862 | None:intergenic | 35.0% |
!! | GTTATAAGGTTCGGTGTAAA+TGG | - | chr4.4:25701718-25701737 | None:intergenic | 35.0% |
!! | GTTGACTCAATCAAAGCTTT+TGG | + | chr4.4:25700668-25700687 | MS.gene008754:CDS | 35.0% |
!! | TGCAGTTGAAAGCTTTAAGA+AGG | + | chr4.4:25701428-25701447 | MS.gene008754:CDS | 35.0% |
AACACCGGTCCTAATACAAA+TGG | + | chr4.4:25700362-25700381 | MS.gene008754:CDS | 40.0% | |
AAGGAAAGGGATGCTATCAA+TGG | + | chr4.4:25700337-25700356 | MS.gene008754:CDS | 40.0% | |
ACAGAATTTGCAATGCGTGA+AGG | + | chr4.4:25701199-25701218 | MS.gene008754:CDS | 40.0% | |
ACCATGTATGCCTAGTGAAA+TGG | - | chr4.4:25701390-25701409 | None:intergenic | 40.0% | |
AGCATAGGTGAAGAACTAGA+AGG | + | chr4.4:25698713-25698732 | MS.gene008754:CDS | 40.0% | |
ATGCTATCAATGGCAAACAC+CGG | + | chr4.4:25700347-25700366 | MS.gene008754:CDS | 40.0% | |
ATGGTGATACTTATCCCGAT+TGG | + | chr4.4:25700594-25700613 | MS.gene008754:CDS | 40.0% | |
CCTTCTCCCAACAAATATCT+AGG | - | chr4.4:25700848-25700867 | None:intergenic | 40.0% | |
CTAGAAGCCTGACATAGTAA+AGG | - | chr4.4:25701311-25701330 | None:intergenic | 40.0% | |
TATGCCATCATCTTCTCCTT+CGG | - | chr4.4:25700558-25700577 | None:intergenic | 40.0% | |
TCCATTTCACTAGGCATACA+TGG | + | chr4.4:25701386-25701405 | MS.gene008754:intron | 40.0% | |
TTGTCACCCTTTACTATGTC+AGG | + | chr4.4:25701301-25701320 | MS.gene008754:intron | 40.0% | |
! | CCTAGATATTTGTTGGGAGA+AGG | + | chr4.4:25700845-25700864 | MS.gene008754:CDS | 40.0% |
! | GATATTTGTTGGGAGAAGGA+AGG | + | chr4.4:25700849-25700868 | MS.gene008754:CDS | 40.0% |
! | GGGATACCTTTTGGATACTT+TGG | + | chr4.4:25699213-25699232 | MS.gene008754:intron | 40.0% |
! | TGCTGCTTGTACAGTTGTAA+GGG | + | chr4.4:25700018-25700037 | MS.gene008754:intron | 40.0% |
!! | AGATGTTAAAGGAGCACTGT+TGG | + | chr4.4:25701174-25701193 | MS.gene008754:CDS | 40.0% |
!! | GAGAGTACCTTAAAATGGAG+GGG | - | chr4.4:25698842-25698861 | None:intergenic | 40.0% |
!! | GGTACATTTGGGATACCTTT+TGG | + | chr4.4:25699204-25699223 | MS.gene008754:intron | 40.0% |
!! | GTTAAAGGCGCTATGATTGA+AGG | + | chr4.4:25700227-25700246 | MS.gene008754:CDS | 40.0% |
!! | TATGTCAGGCTTCTAGTTTC+AGG | + | chr4.4:25701315-25701334 | MS.gene008754:intron | 40.0% |
AACCACCAGTCAAGTTCACT+GGG | - | chr4.4:25700641-25700660 | None:intergenic | 45.0% | |
ACACGAACTGCTCATCTAGA+TGG | + | chr4.4:25700407-25700426 | MS.gene008754:CDS | 45.0% | |
AGACAGAAGCTATGTTGGTG+TGG | + | chr4.4:25699448-25699467 | MS.gene008754:intron | 45.0% | |
ATATCTGCTGGAGATGGTAC+TGG | + | chr4.4:25700257-25700276 | MS.gene008754:CDS | 45.0% | |
ATGCCATCATCTTCTCCTTC+GGG | - | chr4.4:25700557-25700576 | None:intergenic | 45.0% | |
ATTCCCGAAGGAGAAGATGA+TGG | + | chr4.4:25700551-25700570 | MS.gene008754:CDS | 45.0% | |
GAAGGAGGTGATATATCTGC+TGG | + | chr4.4:25700245-25700264 | MS.gene008754:CDS | 45.0% | |
GAGAAGGAAGGGATTGATGA+AGG | + | chr4.4:25700861-25700880 | MS.gene008754:CDS | 45.0% | |
GATTGTGGAGAAATTCCCGA+AGG | + | chr4.4:25700539-25700558 | MS.gene008754:CDS | 45.0% | |
GCTGCTTGTACAGTTGTAAG+GGG | + | chr4.4:25700019-25700038 | MS.gene008754:intron | 45.0% | |
GGGTTTGCAGAGAAAAGTTC+AGG | + | chr4.4:25700990-25701009 | MS.gene008754:intron | 45.0% | |
GGTGATATATCTGCTGGAGA+TGG | + | chr4.4:25700251-25700270 | MS.gene008754:CDS | 45.0% | |
TCGCAACGTGCTCAATTGAA+CGG | - | chr4.4:25700478-25700497 | None:intergenic | 45.0% | |
! | CACAGAAAAGTACACCGCAA+AGG | - | chr4.4:25701512-25701531 | None:intergenic | 45.0% |
! | CTAACCATCATTTGGCTCCA+AGG | - | chr4.4:25701460-25701479 | None:intergenic | 45.0% |
!! | AAAGGCATTGCTCCCAATAC+TGG | + | chr4.4:25698812-25698831 | MS.gene008754:CDS | 45.0% |
!! | AAAGGCGCTATGATTGAAGG+AGG | + | chr4.4:25700230-25700249 | MS.gene008754:CDS | 45.0% |
!! | AAGGCATTGCTCCCAATACT+GGG | + | chr4.4:25698813-25698832 | MS.gene008754:CDS | 45.0% |
!! | CTTTAAGAAGGCACTGACCT+TGG | + | chr4.4:25701440-25701459 | MS.gene008754:CDS | 45.0% |
!! | GCAAAAGCTTTGTTTCGCCA+AGG | + | chr4.4:25701232-25701251 | MS.gene008754:CDS | 45.0% |
!! | GGCTCTAAGGAAGTATCGAA+AGG | + | chr4.4:25700812-25700831 | MS.gene008754:CDS | 45.0% |
!! | GTGCTGCTTGTACAGTTGTA+AGG | + | chr4.4:25700017-25700036 | MS.gene008754:intron | 45.0% |
ACCACCAGTCAAGTTCACTG+GGG | - | chr4.4:25700640-25700659 | None:intergenic | 50.0% | |
AGATCCCCAGTGAACTTGAC+TGG | + | chr4.4:25700633-25700652 | MS.gene008754:CDS | 50.0% | |
AGATGCACTCACCTTCTTCC+TGG | - | chr4.4:25701787-25701806 | None:intergenic | 50.0% | |
CAACCACCAGTCAAGTTCAC+TGG | - | chr4.4:25700642-25700661 | None:intergenic | 50.0% | |
CTGACCTTGGAGCCAAATGA+TGG | + | chr4.4:25701453-25701472 | MS.gene008754:CDS | 50.0% | |
GTCAAGTTCACTGGGGATCT+CGG | - | chr4.4:25700633-25700652 | None:intergenic | 50.0% | |
TAGCCATACCAACCTGTCCT+TGG | - | chr4.4:25701252-25701271 | None:intergenic | 50.0% | |
TCAATTGAGCACGTTGCGAC+CGG | + | chr4.4:25700479-25700498 | MS.gene008754:CDS | 50.0% | |
TTGTTTCGCCAAGGACAGGT+TGG | + | chr4.4:25701241-25701260 | MS.gene008754:intron | 50.0% | |
! | AGGCATTGCTCCCAATACTG+GGG | + | chr4.4:25698814-25698833 | MS.gene008754:CDS | 50.0% |
!! | AGCTTTGTTTCGCCAAGGAC+AGG | + | chr4.4:25701237-25701256 | MS.gene008754:CDS | 50.0% |
!! | TGGGGTACCCCTCCATTTTA+AGG | + | chr4.4:25698832-25698851 | MS.gene008754:CDS | 50.0% |
AAAAGGAACTAGCTGCGGCC+AGG | + | chr4.4:25701766-25701785 | MS.gene008754:CDS | 55.0% | |
AACAGGACGGTCTTCGTCTC+CGG | - | chr4.4:25700501-25700520 | None:intergenic | 55.0% | |
TCCCCAGTGAACTTGACTGG+TGG | + | chr4.4:25700636-25700655 | MS.gene008754:CDS | 55.0% | |
! | TCTGCTGGAGATGGTACTGG+AGG | + | chr4.4:25700260-25700279 | MS.gene008754:CDS | 55.0% |
!! | ATGGAGGGGTACCCCAGTAT+TGG | - | chr4.4:25698828-25698847 | None:intergenic | 55.0% |
!! | TCGCCAAGGACAGGTTGGTA+TGG | + | chr4.4:25701246-25701265 | MS.gene008754:intron | 55.0% |
!! | TGGAGGGGTACCCCAGTATT+GGG | - | chr4.4:25698827-25698846 | None:intergenic | 55.0% |
ACTAGCTGCGGCCAGGAAGA+AGG | + | chr4.4:25701773-25701792 | MS.gene008754:CDS | 60.0% | |
GCAAGGTCTGCAGGCCAATC+GGG | - | chr4.4:25700611-25700630 | None:intergenic | 60.0% | |
GGCAAGGTCTGCAGGCCAAT+CGG | - | chr4.4:25700612-25700631 | None:intergenic | 60.0% | |
GTTCACTGGGGATCTCGGCA+AGG | - | chr4.4:25700628-25700647 | None:intergenic | 60.0% | |
GGGATCTCGGCAAGGTCTGC+AGG | - | chr4.4:25700620-25700639 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 25698683 | 25701930 | 25698683 | ID=MS.gene008754 |
chr4.4 | mRNA | 25698683 | 25701930 | 25698683 | ID=MS.gene008754.t1;Parent=MS.gene008754 |
chr4.4 | exon | 25698683 | 25698853 | 25698683 | ID=MS.gene008754.t1.exon1;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25698683 | 25698853 | 25698683 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
chr4.4 | exon | 25700206 | 25700706 | 25700206 | ID=MS.gene008754.t1.exon2;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25700206 | 25700706 | 25700206 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
chr4.4 | exon | 25700795 | 25700882 | 25700795 | ID=MS.gene008754.t1.exon3;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25700795 | 25700882 | 25700795 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
chr4.4 | exon | 25701000 | 25701052 | 25701000 | ID=MS.gene008754.t1.exon4;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25701000 | 25701052 | 25701000 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
chr4.4 | exon | 25701154 | 25701258 | 25701154 | ID=MS.gene008754.t1.exon5;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25701154 | 25701258 | 25701154 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
chr4.4 | exon | 25701399 | 25701474 | 25701399 | ID=MS.gene008754.t1.exon6;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25701399 | 25701474 | 25701399 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
chr4.4 | exon | 25701757 | 25701794 | 25701757 | ID=MS.gene008754.t1.exon7;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25701757 | 25701794 | 25701757 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
chr4.4 | exon | 25701871 | 25701930 | 25701871 | ID=MS.gene008754.t1.exon8;Parent=MS.gene008754.t1 |
chr4.4 | CDS | 25701871 | 25701930 | 25701871 | ID=cds.MS.gene008754.t1;Parent=MS.gene008754.t1 |
Gene Sequence |
Protein sequence |