Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009658.t1 | XP_024638993.1 | 90.9 | 274 | 25 | 0 | 1 | 274 | 1 | 274 | 2.50E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009658.t1 | P55871 | 89.5 | 172 | 17 | 1 | 103 | 273 | 99 | 270 | 4.4e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009658.t1 | G7K0U8 | 90.9 | 274 | 25 | 0 | 1 | 274 | 49 | 322 | 1.8e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003452 | MS.gene009658 | PPI |
| MS.gene52139 | MS.gene009658 | PPI |
| MS.gene009658 | MS.gene22877 | PPI |
| MS.gene009658 | MS.gene039110 | PPI |
| MS.gene09852 | MS.gene009658 | PPI |
| MS.gene009658 | MS.gene018560 | PPI |
| MS.gene025997 | MS.gene009658 | PPI |
| MS.gene009658 | MS.gene63721 | PPI |
| MS.gene009658 | MS.gene058030 | PPI |
| MS.gene063366 | MS.gene009658 | PPI |
| MS.gene009658 | MS.gene024538 | PPI |
| MS.gene066163 | MS.gene009658 | PPI |
| MS.gene040581 | MS.gene009658 | PPI |
| MS.gene009658 | MS.gene061898 | PPI |
| MS.gene009658 | MS.gene050556 | PPI |
| MS.gene009658 | MS.gene64519 | PPI |
| MS.gene009658 | MS.gene060216 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009658.t1 | MTR_5g075530 | 99.270 | 274 | 2 | 0 | 1 | 274 | 49 | 322 | 0.0 | 558 |
| MS.gene009658.t1 | MTR_3g467620 | 83.942 | 274 | 38 | 3 | 1 | 274 | 1 | 268 | 1.06e-149 | 419 |
| MS.gene009658.t1 | MTR_5g075530 | 98.844 | 173 | 2 | 0 | 1 | 173 | 49 | 221 | 8.49e-122 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009658.t1 | AT5G20920 | 72.794 | 272 | 66 | 3 | 1 | 270 | 1 | 266 | 9.99e-133 | 376 |
| MS.gene009658.t1 | AT5G20920 | 72.794 | 272 | 66 | 3 | 1 | 270 | 1 | 266 | 9.99e-133 | 376 |
| MS.gene009658.t1 | AT5G20920 | 72.794 | 272 | 65 | 4 | 1 | 270 | 1 | 265 | 2.21e-131 | 373 |
| MS.gene009658.t1 | AT3G07920 | 68.421 | 152 | 40 | 2 | 123 | 270 | 17 | 164 | 1.84e-68 | 209 |
| MS.gene009658.t1 | AT5G01940 | 55.634 | 142 | 58 | 3 | 119 | 259 | 72 | 209 | 7.57e-48 | 159 |
| MS.gene009658.t1 | AT5G01940 | 55.634 | 142 | 58 | 3 | 119 | 259 | 104 | 241 | 1.39e-47 | 159 |
| MS.gene009658.t1 | AT5G01940 | 52.564 | 156 | 65 | 4 | 119 | 267 | 72 | 225 | 1.14e-45 | 153 |
Find 64 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTCTTGCTTGCTGAAC+TGG | 0.152413 | 5.3:-60495128 | MS.gene009658:CDS |
| AGAATTCCTTCAAAATTCTT+TGG | 0.293494 | 5.3:+60495049 | None:intergenic |
| TGGAGAGGCAGTTGAAGATT+TGG | 0.342163 | 5.3:-60496422 | MS.gene009658:CDS |
| CTTTGCAGCCTCGTTATCCT+TGG | 0.346996 | 5.3:-60496224 | MS.gene009658:CDS |
| TGATGAATCAGTGGATAAAT+TGG | 0.362248 | 5.3:-60496783 | MS.gene009658:CDS |
| CGCCGATCTCCAGCAAGATC+TGG | 0.373236 | 5.3:+60495606 | None:intergenic |
| GCAACAAAACCAGCTTTGAT+TGG | 0.382810 | 5.3:+60494600 | None:intergenic |
| GATGAATATGTCATTTGTAT+TGG | 0.394913 | 5.3:-60494790 | MS.gene009658:CDS |
| TATTGCTTGCAGTGTGGATC+AGG | 0.417838 | 5.3:-60494636 | MS.gene009658:intron |
| TGTTCACTTGCAGTTTCTGA+TGG | 0.421709 | 5.3:-60496629 | MS.gene009658:intron |
| GAACATAATCCAGATCTTGC+TGG | 0.451726 | 5.3:-60495615 | MS.gene009658:CDS |
| TCCTTTGAAAGTAATGTGTC+CGG | 0.455774 | 5.3:+60494757 | None:intergenic |
| CGGCATTCCTTCTGCCAACA+CGG | 0.456114 | 5.3:+60494577 | None:intergenic |
| GGTACTAGTGGTTCTCTAGA+TGG | 0.461160 | 5.3:-60495106 | MS.gene009658:CDS |
| TCTAGATGGACAGCAAAGAT+TGG | 0.468325 | 5.3:-60495092 | MS.gene009658:CDS |
| GCTTTCTTGCTTGCTGAACT+GGG | 0.473966 | 5.3:-60495127 | MS.gene009658:CDS |
| TGAAACACCAAGTGGTTTGA+AGG | 0.477271 | 5.3:-60497738 | MS.gene009658:CDS |
| TCCACTGATTCATCATCTGC+AGG | 0.478576 | 5.3:+60496791 | None:intergenic |
| AAGAAAGCCATAACATGGTC+TGG | 0.478796 | 5.3:+60495142 | None:intergenic |
| TTTGCAGCCTCGTTATCCTT+GGG | 0.480164 | 5.3:-60496223 | MS.gene009658:CDS |
| GTTCACTTGCAGTTTCTGAT+GGG | 0.495334 | 5.3:-60496628 | MS.gene009658:intron |
| CTTCTTTCTCCGGTGTGAGA+AGG | 0.497603 | 5.3:-60494725 | MS.gene009658:intron |
| TTGTATTGGATGCAAGAGTC+CGG | 0.500255 | 5.3:-60494776 | MS.gene009658:CDS |
| CAGCCTCGTTATCCTTGGGA+AGG | 0.501422 | 5.3:-60496219 | MS.gene009658:CDS |
| AGAACCGTCTCTTCTTTCTC+CGG | 0.503608 | 5.3:-60494735 | MS.gene009658:CDS |
| GGCATTCCTTCTGCCAACAC+GGG | 0.516509 | 5.3:+60494578 | None:intergenic |
| TCGACCACCAGACCATGTTA+TGG | 0.517068 | 5.3:-60495149 | MS.gene009658:CDS |
| TCCGGACACATTACTTTCAA+AGG | 0.524514 | 5.3:-60494758 | MS.gene009658:CDS |
| TTGTTGCCCGTGTTGGCAGA+AGG | 0.525657 | 5.3:-60494584 | MS.gene009658:CDS |
| ATCCAGATCTTGCTGGAGAT+CGG | 0.530264 | 5.3:-60495608 | MS.gene009658:CDS |
| GTGCCTTCACGAAGAACTTG+AGG | 0.533049 | 5.3:+60495564 | None:intergenic |
| TGACCGTGATTATACATATG+AGG | 0.537992 | 5.3:-60496193 | MS.gene009658:CDS |
| TCAGTTGCTCCAATCAAAGC+TGG | 0.541836 | 5.3:-60494609 | MS.gene009658:CDS |
| ATCGGCGAAGGACAGTTATG+AGG | 0.542408 | 5.3:-60495590 | MS.gene009658:CDS |
| GAGAAGATAGAAAATCTGTC+AGG | 0.544015 | 5.3:-60496758 | MS.gene009658:intron |
| ACCTCCTCCTTCAAACCACT+TGG | 0.546295 | 5.3:+60497731 | None:intergenic |
| CGTGTTGGCAGAAGGAATGC+CGG | 0.549875 | 5.3:-60494576 | MS.gene009658:CDS |
| TCTTCAACTGCCTCTCCACT+AGG | 0.552585 | 5.3:+60496427 | None:intergenic |
| TTTGGTACAGCTTCTTGGCA+GGG | 0.553643 | 5.3:-60495655 | MS.gene009658:intron |
| CTTGCTGAACTGGGTACTAG+TGG | 0.558172 | 5.3:-60495118 | MS.gene009658:CDS |
| ACCAAGTGGTTTGAAGGAGG+AGG | 0.558508 | 5.3:-60497732 | MS.gene009658:CDS |
| AGTACGGCCAAATCATGCTC+CGG | 0.563249 | 5.3:+60494557 | None:intergenic |
| ATCTTGCTGGAGATCGGCGA+AGG | 0.578493 | 5.3:-60495602 | MS.gene009658:CDS |
| AGCCTCGTTATCCTTGGGAA+GGG | 0.579244 | 5.3:-60496218 | MS.gene009658:CDS |
| CAGCAAAGATTGGTTGTGAA+GGG | 0.579584 | 5.3:-60495082 | MS.gene009658:CDS |
| ACAGCAAAGATTGGTTGTGA+AGG | 0.582650 | 5.3:-60495083 | MS.gene009658:CDS |
| TCCTGCAGATGATGAATCAG+TGG | 0.610986 | 5.3:-60496792 | MS.gene009658:CDS |
| TTAAATGATATTGATGAGAG+TGG | 0.613941 | 5.3:-60496451 | MS.gene009658:CDS |
| GAGGCAGTTGAAGATTTGGA+TGG | 0.616117 | 5.3:-60496418 | MS.gene009658:intron |
| CCTCCTCATATGTATAATCA+CGG | 0.618081 | 5.3:+60496190 | None:intergenic |
| CTCCCTTCCCAAGGATAACG+AGG | 0.620050 | 5.3:+60496216 | None:intergenic |
| CCTCCTCAAGTTCTTCGTGA+AGG | 0.620103 | 5.3:-60495567 | MS.gene009658:CDS |
| CAAGCAAGAAAGCCATAACA+TGG | 0.625960 | 5.3:+60495137 | None:intergenic |
| AATACTTACTGATATATCGC+CGG | 0.627051 | 5.3:+60495026 | None:intergenic |
| TCACGGTCACTCCCTTCCCA+AGG | 0.642597 | 5.3:+60496207 | None:intergenic |
| GAAAATTCACCTTCTCACAC+CGG | 0.642926 | 5.3:+60494716 | None:intergenic |
| CCTTCACGAAGAACTTGAGG+AGG | 0.643212 | 5.3:+60495567 | None:intergenic |
| ATTGATGAGAGTGGTCCTAG+TGG | 0.645228 | 5.3:-60496442 | MS.gene009658:CDS |
| AACACCAAGTGGTTTGAAGG+AGG | 0.651800 | 5.3:-60497735 | MS.gene009658:CDS |
| TGAGAGTGGTCCTAGTGGAG+AGG | 0.666586 | 5.3:-60496437 | MS.gene009658:CDS |
| CACACCGGAGAAAGAAGAGA+CGG | 0.669379 | 5.3:+60494731 | None:intergenic |
| CCGTGATTATACATATGAGG+AGG | 0.685858 | 5.3:-60496190 | MS.gene009658:intron |
| AAAGCCATAACATGGTCTGG+TGG | 0.690026 | 5.3:+60495145 | None:intergenic |
| ATGGCAGATGAAACACCAAG+TGG | 0.740265 | 5.3:-60497746 | MS.gene009658:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGTAAAAAAAAATAC+TGG | + | chr5.3:60497414-60497433 | None:intergenic | 10.0% |
| !! | ATACTAATATATGATAACAA+TGG | - | chr5.3:60495384-60495403 | MS.gene009658:intron | 15.0% |
| !! | ATATAATCAAATATTCTCTA+AGG | + | chr5.3:60496466-60496485 | None:intergenic | 15.0% |
| !! | TAGAGAATATTTGATTATAT+AGG | - | chr5.3:60496466-60496485 | MS.gene009658:CDS | 15.0% |
| !!! | AATAGTTTAATTGATTGTTT+TGG | - | chr5.3:60496352-60496371 | MS.gene009658:intron | 15.0% |
| !!! | ATAGTTTAATTGATTGTTTT+GGG | - | chr5.3:60496353-60496372 | MS.gene009658:intron | 15.0% |
| !!! | TTTACATTTTAAAGGAAATT+AGG | - | chr5.3:60495046-60495065 | MS.gene009658:CDS | 15.0% |
| !!! | TTTTTAAAGTTATCTGAAAA+TGG | - | chr5.3:60495633-60495652 | MS.gene009658:CDS | 15.0% |
| !! | AACAATCAATTAAACTATTC+TGG | + | chr5.3:60496351-60496370 | None:intergenic | 20.0% |
| !! | ATGTACATCAGTATAAAAAA+TGG | + | chr5.3:60496155-60496174 | None:intergenic | 20.0% |
| !! | ATTTATAATGCATGATATCT+TGG | - | chr5.3:60494901-60494920 | MS.gene009658:intron | 20.0% |
| !! | CAAATAAAAAACTTTAACTC+TGG | + | chr5.3:60495772-60495791 | None:intergenic | 20.0% |
| !! | GATTCAAATTAGTTATTATC+TGG | - | chr5.3:60496298-60496317 | MS.gene009658:intron | 20.0% |
| !! | TAATATATGATAACAATGGT+TGG | - | chr5.3:60495388-60495407 | MS.gene009658:intron | 20.0% |
| !! | TGAATTTCATTGTTGTAAAT+TGG | - | chr5.3:60494856-60494875 | MS.gene009658:intron | 20.0% |
| !! | TTGTTAAACAATAGCTATAT+CGG | - | chr5.3:60494657-60494676 | MS.gene009658:intron | 20.0% |
| !!! | CAGAGTTAAAGTTTTTTATT+TGG | - | chr5.3:60495770-60495789 | MS.gene009658:intron | 20.0% |
| !!! | CGTATGTTTTTTTTTTAATC+TGG | - | chr5.3:60496815-60496834 | MS.gene009658:CDS | 20.0% |
| !!! | GAATATAATTTGTGTTTGTT+TGG | - | chr5.3:60495945-60495964 | MS.gene009658:intron | 20.0% |
| !!! | GTGATTCAAATTAGTTTTTT+TGG | - | chr5.3:60496267-60496286 | MS.gene009658:intron | 20.0% |
| !!! | TGATTTGTAGAAGAAAAATA+CGG | + | chr5.3:60497066-60497085 | None:intergenic | 20.0% |
| !!! | TTGATAATAAGATTCAATTC+AGG | + | chr5.3:60494998-60495017 | None:intergenic | 20.0% |
| !!! | TTTAGGTAATATTTTGAACA+CGG | + | chr5.3:60496547-60496566 | None:intergenic | 20.0% |
| ! | AAAAACTGATTACAGAACAT+CGG | + | chr5.3:60494835-60494854 | None:intergenic | 25.0% |
| ! | AACTAATTTGAATCACAGAT+TGG | + | chr5.3:60496263-60496282 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAAAAAAAAGC+AGG | + | chr5.3:60496623-60496642 | None:intergenic | 25.0% |
| ! | AATACTGAATGGTAAAACAA+TGG | + | chr5.3:60497645-60497664 | None:intergenic | 25.0% |
| ! | ACAATTTAAATCGATATCCA+TGG | + | chr5.3:60497487-60497506 | None:intergenic | 25.0% |
| ! | AGAAGAAGAAAAAAAAAGCA+GGG | + | chr5.3:60496622-60496641 | None:intergenic | 25.0% |
| ! | AGAATTCCTTCAAAATTCTT+TGG | + | chr5.3:60497269-60497288 | None:intergenic | 25.0% |
| ! | ATTTGTAGAAGAAAAATACG+GGG | + | chr5.3:60497064-60497083 | None:intergenic | 25.0% |
| ! | GATTTGTAGAAGAAAAATAC+GGG | + | chr5.3:60497065-60497084 | None:intergenic | 25.0% |
| ! | TTAAAGTTATCTGAAAATGG+TGG | - | chr5.3:60495636-60495655 | MS.gene009658:CDS | 25.0% |
| ! | TTAAATGATATTGATGAGAG+TGG | - | chr5.3:60495864-60495883 | MS.gene009658:intron | 25.0% |
| ! | TTCCAAGTAAAAACTGAAAA+GGG | + | chr5.3:60496584-60496603 | None:intergenic | 25.0% |
| ! | TTGTATTAAATAGTGTATCG+CGG | + | chr5.3:60494691-60494710 | None:intergenic | 25.0% |
| ! | TTTCCAAGTAAAAACTGAAA+AGG | + | chr5.3:60496585-60496604 | None:intergenic | 25.0% |
| !! | AACTGTGTTTGTGAATTTTA+TGG | - | chr5.3:60496780-60496799 | MS.gene009658:CDS | 25.0% |
| !! | ATTCTTCATTTTATCCTTGT+TGG | - | chr5.3:60496489-60496508 | MS.gene009658:intron | 25.0% |
| !! | ATTGTTGTAAATTGGTGATT+TGG | - | chr5.3:60494864-60494883 | MS.gene009658:intron | 25.0% |
| !! | CTATAGTTATCTATCGTTTT+CGG | - | chr5.3:60494629-60494648 | MS.gene009658:intron | 25.0% |
| !! | GATGAATATGTCATTTGTAT+TGG | - | chr5.3:60497525-60497544 | MS.gene009658:intron | 25.0% |
| !! | GGTTATTTCAAACTATGAAT+AGG | - | chr5.3:60494954-60494973 | MS.gene009658:intron | 25.0% |
| !! | TGTGGATTCTAAACAATTTT+TGG | - | chr5.3:60496642-60496661 | MS.gene009658:intron | 25.0% |
| !! | TTCATAGTTTGAAATAACCA+TGG | + | chr5.3:60494953-60494972 | None:intergenic | 25.0% |
| !! | TTCTTCTTCTTTTTCTTAGT+AGG | + | chr5.3:60495485-60495504 | None:intergenic | 25.0% |
| !! | TTGAATCTTGAATCATTTTG+AGG | + | chr5.3:60495119-60495138 | None:intergenic | 25.0% |
| !! | TTTTTCTTAGTAGGATCAAA+TGG | + | chr5.3:60495476-60495495 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTCTTCTTCTTG+TGG | - | chr5.3:60496624-60496643 | MS.gene009658:intron | 25.0% |
| !!! | GAAGTTTGTTATTTGATTGT+AGG | - | chr5.3:60495827-60495846 | MS.gene009658:intron | 25.0% |
| AAAAAACATACGATTTGCAC+AGG | + | chr5.3:60496807-60496826 | None:intergenic | 30.0% | |
| AAAAACCTAGCGATTCTATT+TGG | - | chr5.3:60496983-60497002 | MS.gene009658:intron | 30.0% | |
| AAAACTGATTACAGAACATC+GGG | + | chr5.3:60494834-60494853 | None:intergenic | 30.0% | |
| AAGTGACTATCAGAATGAAT+CGG | - | chr5.3:60495220-60495239 | MS.gene009658:intron | 30.0% | |
| AATACTTACTGATATATCGC+CGG | + | chr5.3:60497292-60497311 | None:intergenic | 30.0% | |
| AATGGTAAAACAATGGAAAC+GGG | + | chr5.3:60497638-60497657 | None:intergenic | 30.0% | |
| AATTTGTGTTTGTTTGGTAG+TGG | - | chr5.3:60495951-60495970 | MS.gene009658:intron | 30.0% | |
| ACTGAAAAAGAAGAAGTTGT+TGG | - | chr5.3:60495181-60495200 | MS.gene009658:intron | 30.0% | |
| AGGTGAATAAAGAATAACCA+AGG | + | chr5.3:60497024-60497043 | None:intergenic | 30.0% | |
| ATCCAATCAATACAAATCTC+TGG | + | chr5.3:60495323-60495342 | None:intergenic | 30.0% | |
| CAATTCAGGATTCAGAAAAT+AGG | + | chr5.3:60494984-60495003 | None:intergenic | 30.0% | |
| GAATGGTAAAACAATGGAAA+CGG | + | chr5.3:60497639-60497658 | None:intergenic | 30.0% | |
| GCTAATGAATGCTAAACTTA+TGG | - | chr5.3:60496015-60496034 | MS.gene009658:intron | 30.0% | |
| GGTGAATAAAGAATAACCAA+GGG | + | chr5.3:60497023-60497042 | None:intergenic | 30.0% | |
| TAATTTGAATCACAGATTGG+AGG | + | chr5.3:60496260-60496279 | None:intergenic | 30.0% | |
| TGATGAATCAGTGGATAAAT+TGG | - | chr5.3:60495532-60495551 | MS.gene009658:CDS | 30.0% | |
| TTTGCAAGACTCTTAATCTA+AGG | - | chr5.3:60497455-60497474 | MS.gene009658:intron | 30.0% | |
| TTTGGCTAGACTAGATTTAT+TGG | - | chr5.3:60495788-60495807 | MS.gene009658:intron | 30.0% | |
| ! | TACCCTTTTCAGTTTTTACT+TGG | - | chr5.3:60496579-60496598 | MS.gene009658:intron | 30.0% |
| ! | TGACAGATTTTCTATCTTCT+CGG | + | chr5.3:60495558-60495577 | None:intergenic | 30.0% |
| ! | TTAATCTAAGGTTATTGCCA+TGG | - | chr5.3:60497467-60497486 | MS.gene009658:intron | 30.0% |
| ! | TTTGCACCAAAGAATTTTGA+AGG | - | chr5.3:60497260-60497279 | MS.gene009658:intron | 30.0% |
| !! | AATGACAAAAGAAAAGTGTC+TGG | - | chr5.3:60495150-60495169 | MS.gene009658:CDS | 30.0% |
| !! | AGAATTTTGAAGGAATTCTC+CGG | - | chr5.3:60497270-60497289 | MS.gene009658:intron | 30.0% |
| !! | TAGTTATTATCTGGTTCTTG+TGG | - | chr5.3:60496307-60496326 | MS.gene009658:intron | 30.0% |
| !! | TGAAAGCATTCTTAAAACCA+AGG | + | chr5.3:60494788-60494807 | None:intergenic | 30.0% |
| AAAAAAAAAGCAGGGAGGAT+TGG | + | chr5.3:60496614-60496633 | None:intergenic | 35.0% | |
| AAATCAGCTCAGAAACACTA+TGG | + | chr5.3:60496235-60496254 | None:intergenic | 35.0% | |
| AATCAGCTGCATTTCAGAAA+TGG | - | chr5.3:60497329-60497348 | MS.gene009658:intron | 35.0% | |
| AATGCATGATATCTTGGTCA+TGG | - | chr5.3:60494907-60494926 | MS.gene009658:intron | 35.0% | |
| ACATCTTGAACTTTCACTAG+AGG | - | chr5.3:60496852-60496871 | MS.gene009658:intron | 35.0% | |
| AGAAGAAAAAAAAAGCAGGG+AGG | + | chr5.3:60496619-60496638 | None:intergenic | 35.0% | |
| AGCGAAAATAAACTTACGTC+TGG | + | chr5.3:60494611-60494630 | None:intergenic | 35.0% | |
| AGTGACTATCAGAATGAATC+GGG | - | chr5.3:60495221-60495240 | MS.gene009658:intron | 35.0% | |
| CCTCCTCATATGTATAATCA+CGG | + | chr5.3:60496128-60496147 | None:intergenic | 35.0% | |
| GACTACAAGTAATGCCTTTA+AGG | - | chr5.3:60495989-60496008 | MS.gene009658:intron | 35.0% | |
| GAGAAGATAGAAAATCTGTC+AGG | - | chr5.3:60495557-60495576 | MS.gene009658:CDS | 35.0% | |
| GAGGTTAGTAGATGATACAA+GGG | + | chr5.3:60495100-60495119 | None:intergenic | 35.0% | |
| GGGTAGATTGAAAATGCTTT+AGG | + | chr5.3:60496564-60496583 | None:intergenic | 35.0% | |
| GTTATCTGAAAATGGTGGTT+AGG | - | chr5.3:60495641-60495660 | MS.gene009658:CDS | 35.0% | |
| TAACAAGAGGGAAAGTAATG+AGG | + | chr5.3:60497105-60497124 | None:intergenic | 35.0% | |
| TGACCGTGATTATACATATG+AGG | - | chr5.3:60496122-60496141 | MS.gene009658:intron | 35.0% | |
| TGAGGTTAGTAGATGATACA+AGG | + | chr5.3:60495101-60495120 | None:intergenic | 35.0% | |
| TTAAAAACATGAACCATGCC+AGG | + | chr5.3:60495620-60495639 | None:intergenic | 35.0% | |
| ! | ACAAGTAATGCCTTTAAGGA+AGG | - | chr5.3:60495993-60496012 | MS.gene009658:intron | 35.0% |
| ! | CACCAGAGATTTGTATTGAT+TGG | - | chr5.3:60495318-60495337 | MS.gene009658:intron | 35.0% |
| ! | TCCTTTGAAAGTAATGTGTC+CGG | + | chr5.3:60497561-60497580 | None:intergenic | 35.0% |
| !! | CATTCAGTATTCTAAAACGC+TGG | - | chr5.3:60497654-60497673 | MS.gene009658:intron | 35.0% |
| !! | CATTCATTAGCCTTCCTTAA+AGG | + | chr5.3:60496006-60496025 | None:intergenic | 35.0% |
| !! | TTGTTGGCTACACTATGTTT+TGG | - | chr5.3:60495197-60495216 | MS.gene009658:intron | 35.0% |
| !!! | CAATTTTTGGTACAGCTTCT+TGG | - | chr5.3:60496655-60496674 | MS.gene009658:intron | 35.0% |
| !!! | CAGCGTTTTAGAATACTGAA+TGG | + | chr5.3:60497656-60497675 | None:intergenic | 35.0% |
| AACAAGCATTAGCAATCTCC+TGG | - | chr5.3:60495599-60495618 | MS.gene009658:CDS | 40.0% | |
| AAGAAAGCCATAACATGGTC+TGG | + | chr5.3:60497176-60497195 | None:intergenic | 40.0% | |
| ACCATGGTACGAACTAATCA+AGG | + | chr5.3:60494937-60494956 | None:intergenic | 40.0% | |
| AGCAACAGCACATTAACAAG+AGG | + | chr5.3:60497118-60497137 | None:intergenic | 40.0% | |
| CAAGCAAGAAAGCCATAACA+TGG | + | chr5.3:60497181-60497200 | None:intergenic | 40.0% | |
| CCGTGATTATACATATGAGG+AGG | - | chr5.3:60496125-60496144 | MS.gene009658:intron | 40.0% | |
| CTTGCAGACGTTCATACATT+TGG | + | chr5.3:60496930-60496949 | None:intergenic | 40.0% | |
| GAAAATTCACCTTCTCACAC+CGG | + | chr5.3:60497602-60497621 | None:intergenic | 40.0% | |
| GAACATAATCCAGATCTTGC+TGG | - | chr5.3:60496700-60496719 | MS.gene009658:intron | 40.0% | |
| GCAACAGCACATTAACAAGA+GGG | + | chr5.3:60497117-60497136 | None:intergenic | 40.0% | |
| GGGATTCATGACAATGAATC+AGG | - | chr5.3:60495261-60495280 | MS.gene009658:intron | 40.0% | |
| GGGTATTATACAAGCTCAAC+AGG | + | chr5.3:60497044-60497063 | None:intergenic | 40.0% | |
| GTACTGTTACCTGATCTTTC+AGG | - | chr5.3:60497138-60497157 | MS.gene009658:intron | 40.0% | |
| GTTCACTTGCAGTTTCTGAT+GGG | - | chr5.3:60495687-60495706 | MS.gene009658:intron | 40.0% | |
| TAAAACATCAACCCGTCAGA+AGG | + | chr5.3:60496379-60496398 | None:intergenic | 40.0% | |
| TCACTCCAAATAGAATCGCT+AGG | + | chr5.3:60496991-60497010 | None:intergenic | 40.0% | |
| TCCGGACACATTACTTTCAA+AGG | - | chr5.3:60497557-60497576 | MS.gene009658:intron | 40.0% | |
| TCTAGATGGACAGCAAAGAT+TGG | - | chr5.3:60497223-60497242 | MS.gene009658:intron | 40.0% | |
| TGAAACACCAAGTGGTTTGA+AGG | - | chr5.3:60494577-60494596 | MS.gene009658:CDS | 40.0% | |
| TGTTCACTTGCAGTTTCTGA+TGG | - | chr5.3:60495686-60495705 | MS.gene009658:intron | 40.0% | |
| TTGTATTGGATGCAAGAGTC+CGG | - | chr5.3:60497539-60497558 | MS.gene009658:intron | 40.0% | |
| ! | ACAGCAAAGATTGGTTGTGA+AGG | - | chr5.3:60497232-60497251 | MS.gene009658:intron | 40.0% |
| ! | CAGCAAAGATTGGTTGTGAA+GGG | - | chr5.3:60497233-60497252 | MS.gene009658:intron | 40.0% |
| ! | GCAACAAAACCAGCTTTGAT+TGG | + | chr5.3:60497718-60497737 | None:intergenic | 40.0% |
| ! | TCCTTGATTAGTTCGTACCA+TGG | - | chr5.3:60494933-60494952 | MS.gene009658:intron | 40.0% |
| !! | AGAATTGGCTTGATCCAACA+AGG | + | chr5.3:60496506-60496525 | None:intergenic | 40.0% |
| !! | CTCTGGAAAAAGTGTCTTAC+AGG | + | chr5.3:60495755-60495774 | None:intergenic | 40.0% |
| AAAGCCATAACATGGTCTGG+TGG | + | chr5.3:60497173-60497192 | None:intergenic | 45.0% | |
| AACACCAAGTGGTTTGAAGG+AGG | - | chr5.3:60494580-60494599 | MS.gene009658:CDS | 45.0% | |
| AGAACATCGGGCACAATCAA+AGG | + | chr5.3:60494822-60494841 | None:intergenic | 45.0% | |
| AGAACCGTCTCTTCTTTCTC+CGG | - | chr5.3:60497580-60497599 | MS.gene009658:intron | 45.0% | |
| ATCCAGATCTTGCTGGAGAT+CGG | - | chr5.3:60496707-60496726 | MS.gene009658:intron | 45.0% | |
| ATGGCAGATGAAACACCAAG+TGG | - | chr5.3:60494569-60494588 | MS.gene009658:CDS | 45.0% | |
| ATTGATGAGAGTGGTCCTAG+TGG | - | chr5.3:60495873-60495892 | MS.gene009658:intron | 45.0% | |
| CTGGTTTATTGCTTGCAGTG+TGG | - | chr5.3:60497673-60497692 | MS.gene009658:intron | 45.0% | |
| GAGGCAGTTGAAGATTTGGA+TGG | - | chr5.3:60495897-60495916 | MS.gene009658:intron | 45.0% | |
| GGAGTGATTATCATCACCCT+TGG | - | chr5.3:60497004-60497023 | MS.gene009658:intron | 45.0% | |
| GGTACTAGTGGTTCTCTAGA+TGG | - | chr5.3:60497209-60497228 | MS.gene009658:intron | 45.0% | |
| GTGATCCAAGGGAAGAGAAT+TGG | + | chr5.3:60496521-60496540 | None:intergenic | 45.0% | |
| TATTGCTTGCAGTGTGGATC+AGG | - | chr5.3:60497679-60497698 | MS.gene009658:intron | 45.0% | |
| TCAAGCCAATTCTCTTCCCT+TGG | - | chr5.3:60496513-60496532 | MS.gene009658:intron | 45.0% | |
| TCAGTTGCTCCAATCAAAGC+TGG | - | chr5.3:60497706-60497725 | MS.gene009658:intron | 45.0% | |
| TCCTGCAGATGATGAATCAG+TGG | - | chr5.3:60495523-60495542 | MS.gene009658:CDS | 45.0% | |
| TCGATGCATCCTGAAAGATC+AGG | + | chr5.3:60497150-60497169 | None:intergenic | 45.0% | |
| TGGAGAGGCAGTTGAAGATT+TGG | - | chr5.3:60495893-60495912 | MS.gene009658:intron | 45.0% | |
| TTTGCAGCCTCGTTATCCTT+GGG | - | chr5.3:60496092-60496111 | MS.gene009658:intron | 45.0% | |
| TTTGGTACAGCTTCTTGGCA+GGG | - | chr5.3:60496660-60496679 | MS.gene009658:intron | 45.0% | |
| ! | GCTTTCTTGCTTGCTGAACT+GGG | - | chr5.3:60497188-60497207 | MS.gene009658:intron | 45.0% |
| ! | TTTTGGTACAGCTTCTTGGC+AGG | - | chr5.3:60496659-60496678 | MS.gene009658:intron | 45.0% |
| !! | TCCACTGATTCATCATCTGC+AGG | + | chr5.3:60495527-60495546 | None:intergenic | 45.0% |
| !!! | ATTGTTTTGGGCCTTCTGAC+GGG | - | chr5.3:60496365-60496384 | MS.gene009658:intron | 45.0% |
| !!! | GATTGTTTTGGGCCTTCTGA+CGG | - | chr5.3:60496364-60496383 | MS.gene009658:intron | 45.0% |
| !! | CAATAAATTATATTATAAAT+TGG | - | chr5.3:60496876-60496895 | MS.gene009658:intron | 5.0% |
| !! | CAATTTATAATATAATTTAT+TGG | + | chr5.3:60496878-60496897 | None:intergenic | 5.0% |
| !!! | AAAAAAAATTTACATTTTAA+AGG | - | chr5.3:60495038-60495057 | MS.gene009658:CDS | 5.0% |
| !!! | AAAATGTAAATTTTTTTTAT+TGG | + | chr5.3:60495036-60495055 | None:intergenic | 5.0% |
| ACCAAGTGGTTTGAAGGAGG+AGG | - | chr5.3:60494583-60494602 | MS.gene009658:CDS | 50.0% | |
| ACCTCCTCCTTCAAACCACT+TGG | + | chr5.3:60494587-60494606 | None:intergenic | 50.0% | |
| AGCCTCGTTATCCTTGGGAA+GGG | - | chr5.3:60496097-60496116 | MS.gene009658:intron | 50.0% | |
| AGGTTGACAAGCGCAGATAG+CGG | + | chr5.3:60494768-60494787 | None:intergenic | 50.0% | |
| ATCGGCGAAGGACAGTTATG+AGG | - | chr5.3:60496725-60496744 | MS.gene009658:intron | 50.0% | |
| CACACCGGAGAAAGAAGAGA+CGG | + | chr5.3:60497587-60497606 | None:intergenic | 50.0% | |
| CCTCCTCAAGTTCTTCGTGA+AGG | - | chr5.3:60496748-60496767 | MS.gene009658:intron | 50.0% | |
| CCTTCACGAAGAACTTGAGG+AGG | + | chr5.3:60496751-60496770 | None:intergenic | 50.0% | |
| CGGGATGCATTGTAGTGAGT+CGG | - | chr5.3:60495240-60495259 | MS.gene009658:intron | 50.0% | |
| CTATCTGCGCTTGTCAACCT+TGG | - | chr5.3:60494768-60494787 | MS.gene009658:CDS | 50.0% | |
| CTTCTTTCTCCGGTGTGAGA+AGG | - | chr5.3:60497590-60497609 | MS.gene009658:intron | 50.0% | |
| CTTGCTGAACTGGGTACTAG+TGG | - | chr5.3:60497197-60497216 | MS.gene009658:intron | 50.0% | |
| CTTTGCAGCCTCGTTATCCT+TGG | - | chr5.3:60496091-60496110 | MS.gene009658:intron | 50.0% | |
| GCATTAGCAATCTCCTGGCA+TGG | - | chr5.3:60495604-60495623 | MS.gene009658:CDS | 50.0% | |
| GGGATGCATTGTAGTGAGTC+GGG | - | chr5.3:60495241-60495260 | MS.gene009658:intron | 50.0% | |
| GTGCCTTCACGAAGAACTTG+AGG | + | chr5.3:60496754-60496773 | None:intergenic | 50.0% | |
| TCGACCACCAGACCATGTTA+TGG | - | chr5.3:60497166-60497185 | MS.gene009658:intron | 50.0% | |
| TCTTCAACTGCCTCTCCACT+AGG | + | chr5.3:60495891-60495910 | None:intergenic | 50.0% | |
| ! | GGCTTTCTTGCTTGCTGAAC+TGG | - | chr5.3:60497187-60497206 | MS.gene009658:intron | 50.0% |
| ! | GGGACTGACAGTGCATTTTC+TGG | - | chr5.3:60495707-60495726 | MS.gene009658:intron | 50.0% |
| ATCTTGCTGGAGATCGGCGA+AGG | - | chr5.3:60496713-60496732 | MS.gene009658:intron | 55.0% | |
| CAGCCTCGTTATCCTTGGGA+AGG | - | chr5.3:60496096-60496115 | MS.gene009658:intron | 55.0% | |
| CGGCATTCCTTCTGCCAACA+CGG | + | chr5.3:60497741-60497760 | None:intergenic | 55.0% | |
| CTCCCTTCCCAAGGATAACG+AGG | + | chr5.3:60496102-60496121 | None:intergenic | 55.0% | |
| GAACACGGCTCGTGATCCAA+GGG | + | chr5.3:60496532-60496551 | None:intergenic | 55.0% | |
| GGCATTCCTTCTGCCAACAC+GGG | + | chr5.3:60497740-60497759 | None:intergenic | 55.0% | |
| TGAACACGGCTCGTGATCCA+AGG | + | chr5.3:60496533-60496552 | None:intergenic | 55.0% | |
| TGAGAGTGGTCCTAGTGGAG+AGG | - | chr5.3:60495878-60495897 | MS.gene009658:intron | 55.0% | |
| ! | CGTGTTGGCAGAAGGAATGC+CGG | - | chr5.3:60497739-60497758 | MS.gene009658:CDS | 55.0% |
| ! | TTGTTGCCCGTGTTGGCAGA+AGG | - | chr5.3:60497731-60497750 | MS.gene009658:CDS | 55.0% |
| !!! | GCTGGTTTTGTTGCCCGTGT+TGG | - | chr5.3:60497724-60497743 | MS.gene009658:CDS | 55.0% |
| CGCCGATCTCCAGCAAGATC+TGG | + | chr5.3:60496712-60496731 | None:intergenic | 60.0% | |
| TCACGGTCACTCCCTTCCCA+AGG | + | chr5.3:60496111-60496130 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 60494569 | 60497768 | 60494569 | ID=MS.gene009658 |
| chr5.3 | mRNA | 60494569 | 60497768 | 60494569 | ID=MS.gene009658.t1;Parent=MS.gene009658 |
| chr5.3 | exon | 60497724 | 60497768 | 60497724 | ID=MS.gene009658.t1.exon1;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60497724 | 60497768 | 60497724 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60496759 | 60496870 | 60496759 | ID=MS.gene009658.t1.exon2;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60496759 | 60496870 | 60496759 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60496583 | 60496638 | 60496583 | ID=MS.gene009658.t1.exon3;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60496583 | 60496638 | 60496583 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60496419 | 60496488 | 60496419 | ID=MS.gene009658.t1.exon4;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60496419 | 60496488 | 60496419 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60496191 | 60496279 | 60496191 | ID=MS.gene009658.t1.exon5;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60496191 | 60496279 | 60496191 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60495522 | 60495667 | 60495522 | ID=MS.gene009658.t1.exon6;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60495522 | 60495667 | 60495522 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60495035 | 60495177 | 60495035 | ID=MS.gene009658.t1.exon7;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60495035 | 60495177 | 60495035 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60494726 | 60494811 | 60494726 | ID=MS.gene009658.t1.exon8;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60494726 | 60494811 | 60494726 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| chr5.3 | exon | 60494569 | 60494646 | 60494569 | ID=MS.gene009658.t1.exon9;Parent=MS.gene009658.t1 |
| chr5.3 | CDS | 60494569 | 60494646 | 60494569 | ID=cds.MS.gene009658.t1;Parent=MS.gene009658.t1 |
| Gene Sequence |
| Protein sequence |
