Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010151.t1 | KEH28108.1 | 97.2 | 428 | 12 | 0 | 3 | 430 | 10 | 437 | 1.20E-179 | 639.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010151.t1 | Q38813 | 54.0 | 374 | 168 | 2 | 57 | 430 | 30 | 399 | 4.4e-82 | 306.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010151.t1 | A0A072UG43 | 97.2 | 428 | 12 | 0 | 3 | 430 | 10 | 437 | 8.5e-180 | 639.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene010151 | MS.gene059290 | PPI |
MS.gene066618 | MS.gene010151 | PPI |
MS.gene010151 | MS.gene50294 | PPI |
MS.gene010151 | MS.gene034372 | PPI |
MS.gene010151 | MS.gene99077 | PPI |
MS.gene010151 | MS.gene045133 | PPI |
MS.gene010151 | MS.gene75493 | PPI |
MS.gene010151 | MS.gene46832 | PPI |
MS.gene010151 | MS.gene052188 | PPI |
MS.gene83734 | MS.gene010151 | PPI |
MS.gene010151 | MS.gene92849 | PPI |
MS.gene010151 | MS.gene35518 | PPI |
MS.gene74302 | MS.gene010151 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010151.t1 | MTR_5g065160 | 96.520 | 431 | 14 | 1 | 1 | 430 | 1 | 431 | 0.0 | 859 |
MS.gene010151.t1 | MTR_5g065160 | 96.729 | 428 | 14 | 0 | 3 | 430 | 10 | 437 | 0.0 | 857 |
MS.gene010151.t1 | MTR_5g065160 | 96.503 | 429 | 14 | 1 | 3 | 430 | 10 | 438 | 0.0 | 854 |
MS.gene010151.t1 | MTR_5g065160 | 96.503 | 429 | 14 | 1 | 3 | 430 | 10 | 438 | 0.0 | 852 |
MS.gene010151.t1 | MTR_4g023470 | 41.737 | 357 | 179 | 6 | 69 | 411 | 80 | 421 | 2.15e-89 | 278 |
MS.gene010151.t1 | MTR_3g027580 | 40.113 | 354 | 200 | 4 | 69 | 418 | 83 | 428 | 2.89e-87 | 273 |
MS.gene010151.t1 | MTR_4g023490 | 34.584 | 373 | 215 | 7 | 68 | 423 | 9 | 369 | 8.16e-66 | 215 |
MS.gene010151.t1 | MTR_3g087030 | 33.693 | 371 | 214 | 9 | 72 | 425 | 79 | 434 | 2.90e-62 | 207 |
MS.gene010151.t1 | MTR_2g104030 | 34.243 | 403 | 241 | 7 | 29 | 415 | 29 | 423 | 7.01e-59 | 200 |
MS.gene010151.t1 | MTR_6g471050 | 31.420 | 331 | 204 | 7 | 102 | 415 | 8 | 332 | 1.18e-41 | 153 |
MS.gene010151.t1 | MTR_8g006430 | 29.577 | 355 | 200 | 14 | 76 | 402 | 15 | 347 | 8.04e-34 | 131 |
MS.gene010151.t1 | MTR_2g087660 | 26.471 | 374 | 232 | 10 | 63 | 412 | 1 | 355 | 2.28e-27 | 113 |
MS.gene010151.t1 | MTR_7g109340 | 27.624 | 362 | 201 | 10 | 67 | 409 | 18 | 337 | 1.20e-25 | 107 |
MS.gene010151.t1 | MTR_4g015840 | 28.696 | 345 | 220 | 11 | 75 | 409 | 4 | 332 | 3.17e-25 | 105 |
MS.gene010151.t1 | MTR_3g108020 | 28.000 | 350 | 209 | 11 | 75 | 412 | 4 | 322 | 3.55e-25 | 105 |
MS.gene010151.t1 | MTR_4g078850 | 27.528 | 356 | 215 | 12 | 75 | 409 | 4 | 337 | 4.75e-25 | 105 |
MS.gene010151.t1 | MTR_2g014470 | 26.912 | 353 | 214 | 11 | 75 | 408 | 4 | 331 | 4.46e-24 | 102 |
MS.gene010151.t1 | MTR_4g050420 | 26.146 | 371 | 235 | 12 | 63 | 412 | 1 | 353 | 5.14e-24 | 103 |
MS.gene010151.t1 | MTR_2g087660 | 26.885 | 305 | 183 | 8 | 63 | 346 | 1 | 286 | 8.88e-22 | 95.9 |
MS.gene010151.t1 | MTR_2g014480 | 26.761 | 355 | 211 | 15 | 75 | 404 | 4 | 334 | 4.08e-21 | 94.4 |
MS.gene010151.t1 | MTR_1g029470 | 48.571 | 70 | 36 | 0 | 73 | 142 | 4 | 73 | 7.59e-13 | 70.1 |
MS.gene010151.t1 | MTR_5g004570 | 37.391 | 115 | 58 | 2 | 73 | 187 | 4 | 104 | 9.83e-13 | 68.2 |
MS.gene010151.t1 | MTR_2g090705 | 47.143 | 70 | 36 | 1 | 75 | 143 | 4 | 73 | 3.63e-12 | 67.8 |
MS.gene010151.t1 | MTR_5g065860 | 44.776 | 67 | 37 | 0 | 71 | 137 | 44 | 110 | 8.39e-12 | 63.2 |
MS.gene010151.t1 | MTR_1g029460 | 47.143 | 70 | 37 | 0 | 73 | 142 | 4 | 73 | 8.99e-12 | 67.0 |
MS.gene010151.t1 | MTR_7g069480 | 52.459 | 61 | 28 | 1 | 77 | 137 | 29 | 88 | 1.44e-11 | 66.6 |
MS.gene010151.t1 | MTR_7g112360 | 43.939 | 66 | 33 | 1 | 76 | 137 | 17 | 82 | 1.78e-11 | 61.6 |
MS.gene010151.t1 | MTR_1g110310 | 46.875 | 64 | 34 | 0 | 74 | 137 | 15 | 78 | 2.37e-11 | 65.5 |
MS.gene010151.t1 | MTR_7g112360 | 43.939 | 66 | 33 | 1 | 76 | 137 | 17 | 82 | 3.46e-11 | 62.0 |
MS.gene010151.t1 | MTR_6g027110 | 42.647 | 68 | 34 | 1 | 75 | 137 | 2 | 69 | 8.73e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010151.t1 | AT1G28210 | 61.497 | 374 | 140 | 2 | 57 | 430 | 30 | 399 | 7.61e-172 | 488 |
MS.gene010151.t1 | AT1G28210 | 61.497 | 374 | 140 | 2 | 57 | 430 | 30 | 399 | 8.89e-172 | 487 |
MS.gene010151.t1 | AT1G28210 | 61.497 | 374 | 140 | 2 | 57 | 430 | 30 | 399 | 2.56e-171 | 487 |
MS.gene010151.t1 | AT5G48030 | 40.599 | 367 | 211 | 4 | 61 | 421 | 80 | 445 | 2.22e-86 | 271 |
MS.gene010151.t1 | AT2G22360 | 32.787 | 366 | 213 | 6 | 68 | 415 | 79 | 429 | 7.51e-60 | 201 |
MS.gene010151.t1 | AT4G39960 | 33.795 | 361 | 223 | 6 | 68 | 415 | 78 | 435 | 4.80e-59 | 199 |
MS.gene010151.t1 | AT4G39960 | 33.795 | 361 | 223 | 6 | 68 | 415 | 78 | 435 | 4.80e-59 | 199 |
MS.gene010151.t1 | AT1G80030 | 32.648 | 389 | 234 | 7 | 57 | 425 | 58 | 438 | 8.74e-55 | 189 |
MS.gene010151.t1 | AT1G80030 | 32.648 | 389 | 234 | 7 | 57 | 425 | 58 | 438 | 8.74e-55 | 189 |
MS.gene010151.t1 | AT1G80030 | 32.648 | 389 | 234 | 7 | 57 | 425 | 58 | 438 | 8.74e-55 | 189 |
MS.gene010151.t1 | AT1G80030 | 32.648 | 389 | 234 | 7 | 57 | 425 | 58 | 438 | 8.90e-55 | 189 |
MS.gene010151.t1 | AT3G17830 | 30.946 | 391 | 239 | 8 | 51 | 414 | 31 | 417 | 2.01e-53 | 186 |
MS.gene010151.t1 | AT1G10350 | 25.905 | 359 | 226 | 13 | 75 | 412 | 4 | 343 | 1.32e-24 | 104 |
MS.gene010151.t1 | AT3G62600 | 26.542 | 373 | 211 | 13 | 63 | 413 | 12 | 343 | 1.87e-24 | 103 |
MS.gene010151.t1 | AT2G20560 | 27.762 | 353 | 211 | 11 | 75 | 409 | 4 | 330 | 2.72e-24 | 103 |
MS.gene010151.t1 | AT5G22060 | 26.158 | 367 | 226 | 12 | 71 | 412 | 10 | 356 | 1.45e-23 | 102 |
MS.gene010151.t1 | AT3G08910 | 27.405 | 343 | 209 | 9 | 75 | 409 | 4 | 314 | 1.93e-23 | 100 |
MS.gene010151.t1 | AT5G25530 | 26.857 | 350 | 225 | 10 | 75 | 412 | 4 | 334 | 4.15e-23 | 100 |
MS.gene010151.t1 | AT3G44110 | 25.833 | 360 | 225 | 10 | 76 | 412 | 15 | 355 | 4.77e-22 | 98.2 |
MS.gene010151.t1 | AT5G01390 | 26.230 | 366 | 197 | 11 | 75 | 409 | 4 | 327 | 6.80e-22 | 96.3 |
MS.gene010151.t1 | AT1G59725 | 23.810 | 357 | 218 | 10 | 75 | 412 | 4 | 325 | 5.05e-21 | 94.0 |
MS.gene010151.t1 | AT5G25530 | 26.257 | 358 | 225 | 11 | 75 | 412 | 4 | 342 | 1.62e-20 | 92.8 |
MS.gene010151.t1 | AT3G44110 | 25.526 | 333 | 206 | 10 | 71 | 380 | 10 | 323 | 4.15e-17 | 82.4 |
MS.gene010151.t1 | AT1G71000 | 47.059 | 68 | 32 | 1 | 74 | 137 | 7 | 74 | 3.61e-15 | 73.6 |
MS.gene010151.t1 | AT1G71000 | 47.059 | 68 | 32 | 1 | 74 | 137 | 7 | 74 | 5.82e-15 | 72.8 |
MS.gene010151.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 73 | 194 | 4 | 115 | 6.27e-13 | 70.1 |
MS.gene010151.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 73 | 194 | 4 | 115 | 6.27e-13 | 70.1 |
MS.gene010151.t1 | AT1G56300 | 43.056 | 72 | 37 | 1 | 70 | 137 | 8 | 79 | 7.69e-13 | 65.5 |
MS.gene010151.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 73 | 194 | 4 | 115 | 8.01e-13 | 69.7 |
MS.gene010151.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 73 | 194 | 4 | 115 | 8.01e-13 | 69.7 |
MS.gene010151.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 73 | 194 | 4 | 115 | 8.56e-13 | 69.3 |
MS.gene010151.t1 | AT3G12170 | 36.975 | 119 | 63 | 3 | 71 | 189 | 7 | 113 | 1.28e-12 | 68.2 |
MS.gene010151.t1 | AT3G12170 | 36.975 | 119 | 63 | 3 | 71 | 189 | 43 | 149 | 2.38e-12 | 67.8 |
MS.gene010151.t1 | AT2G33735 | 43.284 | 67 | 38 | 0 | 74 | 140 | 21 | 87 | 3.03e-12 | 63.9 |
MS.gene010151.t1 | AT2G33735 | 43.284 | 67 | 38 | 0 | 74 | 140 | 21 | 87 | 3.03e-12 | 63.9 |
MS.gene010151.t1 | AT4G39150 | 36.508 | 126 | 62 | 3 | 73 | 194 | 4 | 115 | 5.15e-12 | 67.4 |
MS.gene010151.t1 | AT4G39150 | 36.508 | 126 | 62 | 3 | 73 | 194 | 4 | 115 | 5.15e-12 | 67.4 |
MS.gene010151.t1 | AT4G39150 | 36.508 | 126 | 62 | 3 | 73 | 194 | 4 | 115 | 5.15e-12 | 67.4 |
MS.gene010151.t1 | AT4G28480 | 44.286 | 70 | 38 | 1 | 75 | 143 | 4 | 73 | 1.04e-11 | 65.9 |
MS.gene010151.t1 | AT1G56300 | 43.056 | 72 | 37 | 1 | 70 | 137 | 8 | 79 | 1.33e-11 | 62.8 |
MS.gene010151.t1 | AT4G28480 | 42.667 | 75 | 39 | 2 | 75 | 148 | 4 | 75 | 1.51e-11 | 65.9 |
MS.gene010151.t1 | AT1G76700 | 47.692 | 65 | 34 | 0 | 73 | 137 | 4 | 68 | 1.61e-11 | 66.2 |
MS.gene010151.t1 | AT5G16650 | 41.791 | 67 | 39 | 0 | 71 | 137 | 7 | 73 | 2.33e-11 | 61.6 |
MS.gene010151.t1 | AT2G41000 | 40.449 | 89 | 41 | 2 | 75 | 151 | 3 | 91 | 2.66e-11 | 63.5 |
MS.gene010151.t1 | AT5G18140 | 40.506 | 79 | 43 | 2 | 63 | 138 | 62 | 139 | 3.05e-11 | 64.7 |
MS.gene010151.t1 | AT5G01390 | 42.857 | 70 | 39 | 1 | 75 | 143 | 4 | 73 | 3.20e-11 | 63.5 |
MS.gene010151.t1 | AT3G08970 | 49.180 | 61 | 30 | 1 | 77 | 137 | 29 | 88 | 4.14e-11 | 65.5 |
MS.gene010151.t1 | AT3G08970 | 49.180 | 61 | 30 | 1 | 77 | 137 | 29 | 88 | 4.14e-11 | 65.5 |
MS.gene010151.t1 | AT5G01390 | 42.857 | 70 | 39 | 1 | 75 | 143 | 4 | 73 | 4.20e-11 | 63.2 |
MS.gene010151.t1 | AT5G01390 | 42.857 | 70 | 39 | 1 | 75 | 143 | 4 | 73 | 4.94e-11 | 63.5 |
MS.gene010151.t1 | AT5G16650 | 41.791 | 67 | 39 | 0 | 71 | 137 | 7 | 73 | 6.28e-11 | 61.2 |
MS.gene010151.t1 | AT5G06910 | 32.773 | 119 | 68 | 2 | 71 | 189 | 25 | 131 | 7.02e-11 | 63.2 |
Find 101 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGAGGTGCCTACTTTATC+AGG | 0.261637 | 5.2:-55108392 | MS.gene010151:CDS |
GATGAGATGAGAAGAATTTC+CGG | 0.273754 | 5.2:+55116792 | None:intergenic |
TGTTTGTCTTGTGGAGGATC+TGG | 0.276142 | 5.2:-55112036 | MS.gene010151:CDS |
AAAAGAGGATTATCTAATTC+CGG | 0.288993 | 5.2:-55116640 | MS.gene010151:CDS |
GTTCAATATCTGAAGGAAAT+TGG | 0.300864 | 5.2:-55105976 | None:intergenic |
GAACTGGCAGGCGTGGATTC+AGG | 0.319750 | 5.2:-55111603 | MS.gene010151:intron |
TGCTCACGGTTCAGAGAATA+TGG | 0.339296 | 5.2:-55113599 | MS.gene010151:CDS |
CGATATCTGAATGGAATTCC+CGG | 0.346301 | 5.2:+55116621 | None:intergenic |
CCAGCAGCATTCCCACCTTC+TGG | 0.357293 | 5.2:+55111564 | None:intergenic |
GGATTATTCTTATTTGCATC+TGG | 0.362373 | 5.2:+55113957 | None:intergenic |
GAGTTTATACATTAAAATAA+AGG | 0.366846 | 5.2:-55111523 | MS.gene010151:intron |
AGGATCTGGCCGCATTATTA+AGG | 0.367591 | 5.2:-55112144 | MS.gene010151:intron |
ATTTGCAAAGGAGGAAATAA+AGG | 0.370140 | 5.2:-55106008 | MS.gene010151:CDS |
TATCGTTATGTTTATGCTAC+AGG | 0.373126 | 5.2:-55116603 | MS.gene010151:intron |
TTCATGAAATTGTTTCGTTC+CGG | 0.380954 | 5.2:-55116811 | MS.gene010151:CDS |
AAAGAGGATTATCTAATTCC+GGG | 0.399771 | 5.2:-55116639 | MS.gene010151:CDS |
ATGAAACTGAAGAAAGAAAA+TGG | 0.400834 | 5.2:+55116846 | None:intergenic |
GGTTCAGAGAATATGGAATA+TGG | 0.404928 | 5.2:-55113592 | MS.gene010151:CDS |
GTAATGCATGTTGATGTAAA+TGG | 0.411283 | 5.2:+55112173 | None:intergenic |
CGAAACTATTATCGGATACT+TGG | 0.419350 | 5.2:-55116287 | MS.gene010151:CDS |
CCGCTGAACGAAACTATTAT+CGG | 0.421702 | 5.2:-55116295 | MS.gene010151:CDS |
TGCATGATGGACAAACTGTT+CGG | 0.427134 | 5.2:+55112331 | None:intergenic |
TGAAATTTCCTCTTTGCTGA+TGG | 0.429325 | 5.2:+55113936 | None:intergenic |
CTAAATACTTGCAGCTGTCC+TGG | 0.432436 | 5.2:+55107318 | None:intergenic |
GTTTGTCTTGTGGAGGATCT+GGG | 0.437722 | 5.2:-55112035 | MS.gene010151:CDS |
TATTCTTGGTGGCAAGGTTG+AGG | 0.449605 | 5.2:-55108408 | MS.gene010151:CDS |
AAGTAATTTACCTGCTGGTA+TGG | 0.451989 | 5.2:+55111981 | None:intergenic |
GGACAGCTGCAAGTATTTAG+AGG | 0.469086 | 5.2:-55107315 | MS.gene010151:CDS |
TGCATTACTTGTAAAGGATC+TGG | 0.469733 | 5.2:-55112158 | MS.gene010151:CDS |
GCATGATGGACAAACTGTTC+GGG | 0.472832 | 5.2:+55112332 | None:intergenic |
GGAGGATCTGGGATTATTGA+AGG | 0.474532 | 5.2:-55112024 | MS.gene010151:CDS |
ACAGGCTATTCTTGGTGGCA+AGG | 0.485385 | 5.2:-55108414 | MS.gene010151:intron |
TGTCCATCATGCAGGGGTGC+CGG | 0.485566 | 5.2:-55112321 | MS.gene010151:CDS |
TGTACAAAATACCCATGCTT+TGG | 0.488581 | 5.2:+55107182 | None:intergenic |
TGTCCTGGTTGAACACCCTT+AGG | 0.491247 | 5.2:+55107333 | None:intergenic |
GAACAGTTTGTCCATCATGC+AGG | 0.491550 | 5.2:-55112329 | MS.gene010151:CDS |
CATTCCCACCTTCTGGCACA+TGG | 0.494951 | 5.2:+55111571 | None:intergenic |
CGACCGGCACCCCTGCATGA+TGG | 0.497960 | 5.2:+55112318 | None:intergenic |
GCACCATCCCTCGAAAAGAC+TGG | 0.499605 | 5.2:+55110312 | None:intergenic |
ATGATCTACCTTGTCATACT+CGG | 0.503787 | 5.2:+55113736 | None:intergenic |
GGTGGGAATGCTGCTGGAAG+TGG | 0.504234 | 5.2:-55111558 | MS.gene010151:CDS |
ATGCCTTCTTTATCTCATCC+TGG | 0.506095 | 5.2:+55116246 | None:intergenic |
CTCGTTGAAATAGGTGGATG+AGG | 0.507123 | 5.2:-55110337 | MS.gene010151:intron |
CTGTATCAAACCAGATGGAT+GGG | 0.514997 | 5.2:-55112373 | MS.gene010151:intron |
TCAACATGCATTACTTGTAA+AGG | 0.518023 | 5.2:-55112164 | MS.gene010151:CDS |
TATTCTTATTTGCATCTGGA+TGG | 0.518251 | 5.2:+55113961 | None:intergenic |
GATTATTGAAGGGATTAAAG+AGG | 0.530183 | 5.2:-55112013 | MS.gene010151:CDS |
TAAACATAACGATATCTGAA+TGG | 0.535138 | 5.2:+55116612 | None:intergenic |
TTACTCACCACAATTATCAC+AGG | 0.536497 | 5.2:+55113215 | None:intergenic |
TTCCAATGCACTTACTCGAC+CGG | 0.538074 | 5.2:+55112302 | None:intergenic |
TATGATTCCTCAGATACCTA+AGG | 0.539447 | 5.2:-55107349 | MS.gene010151:intron |
GCTGTATCAAACCAGATGGA+TGG | 0.542484 | 5.2:-55112374 | MS.gene010151:intron |
CCAGAAGGTGGGAATGCTGC+TGG | 0.543160 | 5.2:-55111564 | MS.gene010151:CDS |
AACAGTTTGTCCATCATGCA+GGG | 0.544730 | 5.2:-55112328 | MS.gene010151:CDS |
ACAATCCATGTGCCAGAAGG+TGG | 0.547870 | 5.2:-55111576 | MS.gene010151:CDS |
GCTGGAAGTGGTGGTCGACA+TGG | 0.548526 | 5.2:-55111546 | MS.gene010151:CDS |
ACTTGAAGAATTTGCAAAGG+AGG | 0.552069 | 5.2:-55106017 | MS.gene010151:CDS |
TGCAAAGGAGGAAATAAAGG+AGG | 0.553510 | 5.2:-55106005 | MS.gene010151:CDS |
CAATTTAAGATGCGTGCTCA+CGG | 0.554083 | 5.2:-55113613 | MS.gene010151:intron |
CTGCAAGTATTTAGAGGCAA+AGG | 0.556105 | 5.2:-55107309 | MS.gene010151:intron |
TCAGTTCTCATCAAATATAG+AGG | 0.557415 | 5.2:-55113388 | MS.gene010151:intron |
TCCTCCCGCGGCTTCTGAGA+AGG | 0.558759 | 5.2:+55113272 | None:intergenic |
ATCAGGGAAGATGCAAGTAA+AGG | 0.559877 | 5.2:-55108375 | MS.gene010151:intron |
AGATGTAAGAGAAGCTTATG+AGG | 0.560366 | 5.2:-55113913 | MS.gene010151:intron |
TGTTGCTGAAAATGCTAGCC+AGG | 0.564355 | 5.2:-55116264 | MS.gene010151:CDS |
TGATGCAGAAAGATTTAGAA+AGG | 0.567593 | 5.2:-55113557 | MS.gene010151:CDS |
GGGAATGCTGCTGGAAGTGG+TGG | 0.574072 | 5.2:-55111555 | MS.gene010151:CDS |
GTTAAAGTTACCATACCAGC+AGG | 0.579997 | 5.2:-55111991 | MS.gene010151:intron |
GAGGATCTGGGATTATTGAA+GGG | 0.581463 | 5.2:-55112023 | MS.gene010151:CDS |
GGAAATAGTTCAATATCTGA+AGG | 0.581568 | 5.2:-55105983 | MS.gene010151:CDS |
ATGCAGGACTGCCAAAGCAT+GGG | 0.587800 | 5.2:-55107193 | MS.gene010151:intron |
ATGATTCCTCAGATACCTAA+GGG | 0.589375 | 5.2:-55107348 | MS.gene010151:intron |
ATCTAATATTAGCTTTACAC+AGG | 0.589607 | 5.2:-55110274 | MS.gene010151:intron |
AGAATAATCCATCAGCAAAG+AGG | 0.589754 | 5.2:-55113944 | MS.gene010151:CDS |
ATACCTAAGGGTGTTCAACC+AGG | 0.589906 | 5.2:-55107336 | MS.gene010151:CDS |
TTGAGGTGCCTACTTTATCA+GGG | 0.589919 | 5.2:-55108391 | MS.gene010151:CDS |
CTGGAAGTGGTGGTCGACAT+GGG | 0.590011 | 5.2:-55111545 | MS.gene010151:CDS |
GCAAAGGAGGAAATAAAGGA+GGG | 0.593191 | 5.2:-55106004 | MS.gene010151:CDS |
TGCATCTTCCCTGATAAAGT+AGG | 0.608731 | 5.2:+55108383 | None:intergenic |
TATACTTGAAGAATTTGCAA+AGG | 0.610199 | 5.2:-55106020 | MS.gene010151:CDS |
CCGATAATAGTTTCGTTCAG+CGG | 0.612422 | 5.2:+55116295 | None:intergenic |
GATGCAGGACTGCCAAAGCA+TGG | 0.619189 | 5.2:-55107194 | MS.gene010151:intron |
CTTACCTTCTCAGAAGCCGC+GGG | 0.621489 | 5.2:-55113276 | MS.gene010151:CDS |
CAATCCATGTGCCAGAAGGT+GGG | 0.625311 | 5.2:-55111575 | MS.gene010151:CDS |
ACTTACCTTCTCAGAAGCCG+CGG | 0.625415 | 5.2:-55113277 | MS.gene010151:CDS |
TAGCCAGGATGAGATAAAGA+AGG | 0.625702 | 5.2:-55116249 | MS.gene010151:CDS |
GAAACAATTTCATGAACGAG+AGG | 0.626240 | 5.2:+55116818 | None:intergenic |
GATAAAGAAGGCATTTCACT+CGG | 0.628750 | 5.2:-55116237 | MS.gene010151:intron |
ACCTTCTCAGAAGCCGCGGG+AGG | 0.629055 | 5.2:-55113273 | MS.gene010151:CDS |
GATACAATCCATGTGCCAGA+AGG | 0.629876 | 5.2:-55111579 | MS.gene010151:CDS |
TGCATGTTGATGTAAATGGC+GGG | 0.630577 | 5.2:+55112177 | None:intergenic |
TATGGAGGACCTTAATAATG+CGG | 0.634096 | 5.2:+55112135 | None:intergenic |
TGTATCAAACCAGATGGATG+GGG | 0.650704 | 5.2:-55112372 | MS.gene010151:intron |
TACTCACCACAATTATCACA+GGG | 0.652525 | 5.2:+55113216 | None:intergenic |
ATTTCATCAAGTATTCTCTG+AGG | 0.670357 | 5.2:-55113509 | MS.gene010151:intron |
GGATGGTGCAGATATCTATG+TGG | 0.673393 | 5.2:-55110298 | MS.gene010151:CDS |
ACAGTTTGTCCATCATGCAG+GGG | 0.682235 | 5.2:-55112327 | MS.gene010151:CDS |
AAAGAGGGCCGAGTATGACA+AGG | 0.689679 | 5.2:-55113744 | MS.gene010151:intron |
CCTACGTGGGAAACTTTACA+CGG | 0.690047 | 5.2:+55107135 | None:intergenic |
GCAGTTCCCTGTGATAATTG+TGG | 0.707059 | 5.2:-55113222 | MS.gene010151:intron |
ATGCATGTTGATGTAAATGG+CGG | 0.714930 | 5.2:+55112176 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 55105977 | 55116882 | 55105977 | ID=MS.gene010151 |
chr5.2 | mRNA | 55105977 | 55116882 | 55105977 | ID=MS.gene010151.t1;Parent=MS.gene010151 |
chr5.2 | exon | 55116771 | 55116882 | 55116771 | ID=MS.gene010151.t1.exon1;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55116771 | 55116882 | 55116771 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55116604 | 55116690 | 55116604 | ID=MS.gene010151.t1.exon2;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55116604 | 55116690 | 55116604 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55116238 | 55116329 | 55116238 | ID=MS.gene010151.t1.exon3;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55116238 | 55116329 | 55116238 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55113914 | 55113997 | 55113914 | ID=MS.gene010151.t1.exon4;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55113914 | 55113997 | 55113914 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55113745 | 55113783 | 55113745 | ID=MS.gene010151.t1.exon5;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55113745 | 55113783 | 55113745 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55113510 | 55113626 | 55113510 | ID=MS.gene010151.t1.exon6;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55113510 | 55113626 | 55113510 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55113389 | 55113430 | 55113389 | ID=MS.gene010151.t1.exon7;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55113389 | 55113430 | 55113389 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55113223 | 55113310 | 55113223 | ID=MS.gene010151.t1.exon8;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55113223 | 55113310 | 55113223 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55112317 | 55112381 | 55112317 | ID=MS.gene010151.t1.exon9;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55112317 | 55112381 | 55112317 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55112145 | 55112207 | 55112145 | ID=MS.gene010151.t1.exon10;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55112145 | 55112207 | 55112145 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55111992 | 55112064 | 55111992 | ID=MS.gene010151.t1.exon11;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55111992 | 55112064 | 55111992 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55111524 | 55111615 | 55111524 | ID=MS.gene010151.t1.exon12;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55111524 | 55111615 | 55111524 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55110275 | 55110346 | 55110275 | ID=MS.gene010151.t1.exon13;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55110275 | 55110346 | 55110275 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55108376 | 55108432 | 55108376 | ID=MS.gene010151.t1.exon14;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55108376 | 55108432 | 55108376 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55107310 | 55107358 | 55107310 | ID=MS.gene010151.t1.exon15;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55107310 | 55107358 | 55107310 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55107140 | 55107209 | 55107140 | ID=MS.gene010151.t1.exon16;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55107140 | 55107209 | 55107140 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
chr5.2 | exon | 55105977 | 55106066 | 55105977 | ID=MS.gene010151.t1.exon17;Parent=MS.gene010151.t1 |
chr5.2 | CDS | 55105977 | 55106066 | 55105977 | ID=cds.MS.gene010151.t1;Parent=MS.gene010151.t1 |
Gene Sequence |
Protein sequence |