Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46832.t1 | XP_003599084.1 | 93.7 | 444 | 27 | 1 | 1 | 444 | 1 | 443 | 9.50E-233 | 815.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46832.t1 | Q8GWW8 | 57.0 | 461 | 173 | 9 | 1 | 442 | 1 | 455 | 3.6e-132 | 473.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46832.t1 | G7IWH6 | 93.7 | 444 | 27 | 1 | 1 | 444 | 1 | 443 | 6.9e-233 | 815.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049230 | MS.gene46832 | 0.820642 | 6.16E-53 | -1.69E-46 |
MS.gene049378 | MS.gene46832 | 0.808384 | 3.18E-50 | -1.69E-46 |
MS.gene049822 | MS.gene46832 | 0.801962 | 7.03E-49 | -1.69E-46 |
MS.gene050226 | MS.gene46832 | 0.800763 | 1.24E-48 | -1.69E-46 |
MS.gene050227 | MS.gene46832 | 0.814377 | 1.59E-51 | -1.69E-46 |
MS.gene050228 | MS.gene46832 | 0.812034 | 5.19E-51 | -1.69E-46 |
MS.gene050277 | MS.gene46832 | 0.825452 | 4.65E-54 | -1.69E-46 |
MS.gene050303 | MS.gene46832 | 0.825838 | 3.77E-54 | -1.69E-46 |
MS.gene050623 | MS.gene46832 | -0.836345 | 9.88E-57 | -1.69E-46 |
MS.gene050642 | MS.gene46832 | 0.827945 | 1.18E-54 | -1.69E-46 |
MS.gene051983 | MS.gene46832 | 0.801444 | 8.98E-49 | -1.69E-46 |
MS.gene052176 | MS.gene46832 | 0.848091 | 7.64E-60 | -1.69E-46 |
MS.gene052286 | MS.gene46832 | 0.848012 | 8.04E-60 | -1.69E-46 |
MS.gene052302 | MS.gene46832 | 0.822367 | 2.46E-53 | -1.69E-46 |
MS.gene052309 | MS.gene46832 | -0.802928 | 4.45E-49 | -1.69E-46 |
MS.gene052376 | MS.gene46832 | 0.828348 | 9.45E-55 | -1.69E-46 |
MS.gene052856 | MS.gene46832 | 0.800163 | 1.64E-48 | -1.69E-46 |
MS.gene054657 | MS.gene46832 | 0.810619 | 1.05E-50 | -1.69E-46 |
MS.gene05510 | MS.gene46832 | 0.801066 | 1.07E-48 | -1.69E-46 |
MS.gene055441 | MS.gene46832 | 0.80865 | 2.79E-50 | -1.69E-46 |
MS.gene056403 | MS.gene46832 | 0.815267 | 1.01E-51 | -1.69E-46 |
MS.gene056605 | MS.gene46832 | 0.822352 | 2.48E-53 | -1.69E-46 |
MS.gene056631 | MS.gene46832 | 0.805983 | 1.03E-49 | -1.69E-46 |
MS.gene056979 | MS.gene46832 | 0.801367 | 9.31E-49 | -1.69E-46 |
MS.gene056986 | MS.gene46832 | 0.809918 | 1.49E-50 | -1.69E-46 |
MS.gene057079 | MS.gene46832 | 0.82922 | 5.81E-55 | -1.69E-46 |
MS.gene057555 | MS.gene46832 | 0.80502 | 1.63E-49 | -1.69E-46 |
MS.gene05795 | MS.gene46832 | 0.833267 | 5.88E-56 | -1.69E-46 |
MS.gene057999 | MS.gene46832 | 0.811489 | 6.82E-51 | -1.69E-46 |
MS.gene058238 | MS.gene46832 | 0.845852 | 3.14E-59 | -1.69E-46 |
MS.gene058399 | MS.gene46832 | 0.804905 | 1.73E-49 | -1.69E-46 |
MS.gene059249 | MS.gene46832 | 0.807046 | 6.12E-50 | -1.69E-46 |
MS.gene059317 | MS.gene46832 | 0.814801 | 1.28E-51 | -1.69E-46 |
MS.gene059830 | MS.gene46832 | 0.834307 | 3.23E-56 | -1.69E-46 |
MS.gene060297 | MS.gene46832 | 0.841789 | 3.84E-58 | -1.69E-46 |
MS.gene060586 | MS.gene46832 | 0.836706 | 8.00E-57 | -1.69E-46 |
MS.gene060879 | MS.gene46832 | 0.801633 | 8.21E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene46832 | MS.gene41176 | PPI |
MS.gene45489 | MS.gene46832 | PPI |
MS.gene46832 | MS.gene043886 | PPI |
MS.gene052188 | MS.gene46832 | PPI |
MS.gene46832 | MS.gene052122 | PPI |
MS.gene46832 | MS.gene071169 | PPI |
MS.gene021114 | MS.gene46832 | PPI |
MS.gene050058 | MS.gene46832 | PPI |
MS.gene010151 | MS.gene46832 | PPI |
MS.gene004045 | MS.gene46832 | PPI |
MS.gene46832 | MS.gene64132 | PPI |
MS.gene46832 | MS.gene045133 | PPI |
MS.gene30955 | MS.gene46832 | PPI |
MS.gene46832 | MS.gene75493 | PPI |
MS.gene31156 | MS.gene46832 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46832.t1 | MTR_3g027580 | 97.973 | 444 | 8 | 1 | 1 | 444 | 1 | 443 | 0.0 | 896 |
MS.gene46832.t1 | MTR_4g023470 | 66.889 | 450 | 133 | 7 | 1 | 443 | 1 | 441 | 0.0 | 569 |
MS.gene46832.t1 | MTR_4g023490 | 57.447 | 376 | 133 | 8 | 84 | 442 | 11 | 376 | 8.19e-134 | 390 |
MS.gene46832.t1 | MTR_5g065160 | 41.509 | 371 | 190 | 6 | 73 | 429 | 69 | 426 | 1.62e-90 | 282 |
MS.gene46832.t1 | MTR_5g065160 | 41.509 | 371 | 190 | 6 | 73 | 429 | 62 | 419 | 1.93e-90 | 282 |
MS.gene46832.t1 | MTR_5g065160 | 41.509 | 371 | 190 | 6 | 73 | 429 | 69 | 426 | 2.33e-90 | 282 |
MS.gene46832.t1 | MTR_5g065160 | 41.551 | 361 | 186 | 5 | 83 | 429 | 76 | 425 | 5.41e-90 | 280 |
MS.gene46832.t1 | MTR_3g087030 | 38.992 | 377 | 197 | 10 | 74 | 427 | 61 | 427 | 1.90e-70 | 229 |
MS.gene46832.t1 | MTR_2g104030 | 31.283 | 374 | 221 | 6 | 78 | 425 | 59 | 422 | 5.13e-56 | 193 |
MS.gene46832.t1 | MTR_6g471050 | 32.836 | 335 | 191 | 9 | 115 | 425 | 7 | 331 | 4.33e-44 | 160 |
MS.gene46832.t1 | MTR_8g006430 | 33.143 | 350 | 187 | 15 | 90 | 411 | 15 | 345 | 1.18e-41 | 153 |
MS.gene46832.t1 | MTR_2g087660 | 33.333 | 363 | 215 | 14 | 80 | 423 | 1 | 355 | 7.82e-34 | 131 |
MS.gene46832.t1 | MTR_4g050420 | 31.534 | 352 | 218 | 13 | 80 | 415 | 1 | 345 | 1.22e-31 | 125 |
MS.gene46832.t1 | MTR_2g087660 | 35.032 | 314 | 180 | 12 | 80 | 377 | 1 | 306 | 2.20e-31 | 123 |
MS.gene46832.t1 | MTR_7g109340 | 28.070 | 342 | 224 | 7 | 83 | 423 | 20 | 340 | 6.18e-30 | 119 |
MS.gene46832.t1 | MTR_4g078850 | 30.000 | 350 | 209 | 12 | 89 | 419 | 4 | 336 | 1.56e-25 | 107 |
MS.gene46832.t1 | MTR_4g015840 | 29.395 | 347 | 210 | 9 | 89 | 419 | 4 | 331 | 5.12e-25 | 105 |
MS.gene46832.t1 | MTR_3g108020 | 26.627 | 338 | 218 | 10 | 89 | 419 | 4 | 318 | 1.64e-23 | 100 |
MS.gene46832.t1 | MTR_2g090705 | 28.448 | 348 | 208 | 11 | 89 | 419 | 4 | 327 | 2.32e-23 | 100 |
MS.gene46832.t1 | MTR_2g014470 | 45.872 | 109 | 56 | 2 | 89 | 194 | 4 | 112 | 3.29e-19 | 89.0 |
MS.gene46832.t1 | MTR_5g037880 | 26.239 | 343 | 161 | 10 | 89 | 419 | 5 | 267 | 9.71e-19 | 86.3 |
MS.gene46832.t1 | MTR_1g110310 | 51.948 | 77 | 36 | 1 | 83 | 158 | 9 | 85 | 2.45e-16 | 80.9 |
MS.gene46832.t1 | MTR_5g004570 | 53.623 | 69 | 32 | 0 | 89 | 157 | 6 | 74 | 2.62e-16 | 78.6 |
MS.gene46832.t1 | MTR_2g014480 | 44.545 | 110 | 57 | 3 | 89 | 194 | 4 | 113 | 2.63e-16 | 80.1 |
MS.gene46832.t1 | MTR_1g105540 | 54.667 | 75 | 30 | 3 | 89 | 160 | 35 | 108 | 1.26e-15 | 77.8 |
MS.gene46832.t1 | MTR_7g092380 | 56.716 | 67 | 29 | 0 | 88 | 154 | 21 | 87 | 1.66e-15 | 77.0 |
MS.gene46832.t1 | MTR_7g101070 | 57.576 | 66 | 27 | 1 | 88 | 152 | 357 | 422 | 2.86e-15 | 78.2 |
MS.gene46832.t1 | MTR_1g029460 | 45.652 | 92 | 47 | 2 | 89 | 178 | 6 | 96 | 4.20e-15 | 77.0 |
MS.gene46832.t1 | MTR_8g037810 | 41.837 | 98 | 51 | 1 | 90 | 187 | 7 | 98 | 6.22e-15 | 76.3 |
MS.gene46832.t1 | MTR_1g029470 | 51.351 | 74 | 35 | 1 | 89 | 162 | 6 | 78 | 6.41e-15 | 76.6 |
MS.gene46832.t1 | MTR_5g035770 | 45.679 | 81 | 44 | 0 | 77 | 157 | 13 | 93 | 8.29e-15 | 76.3 |
MS.gene46832.t1 | MTR_1g052110 | 53.846 | 65 | 30 | 0 | 90 | 154 | 39 | 103 | 2.44e-13 | 70.9 |
MS.gene46832.t1 | MTR_5g065860 | 45.312 | 64 | 35 | 0 | 88 | 151 | 47 | 110 | 4.17e-13 | 67.0 |
MS.gene46832.t1 | MTR_7g112360 | 46.970 | 66 | 31 | 1 | 90 | 151 | 17 | 82 | 5.66e-13 | 65.9 |
MS.gene46832.t1 | MTR_7g112360 | 46.970 | 66 | 31 | 1 | 90 | 151 | 17 | 82 | 2.81e-12 | 65.1 |
MS.gene46832.t1 | MTR_7g069480 | 50.000 | 68 | 33 | 1 | 89 | 156 | 27 | 93 | 5.31e-12 | 68.2 |
MS.gene46832.t1 | MTR_8g022310 | 47.126 | 87 | 39 | 2 | 87 | 167 | 8 | 93 | 5.62e-12 | 65.5 |
MS.gene46832.t1 | MTR_8g022310 | 47.126 | 87 | 39 | 2 | 87 | 167 | 8 | 93 | 1.01e-11 | 64.3 |
MS.gene46832.t1 | MTR_8g022310 | 47.126 | 87 | 39 | 2 | 87 | 167 | 8 | 93 | 1.66e-11 | 63.9 |
MS.gene46832.t1 | MTR_7g085600 | 45.205 | 73 | 36 | 2 | 89 | 158 | 54 | 125 | 1.80e-11 | 65.1 |
MS.gene46832.t1 | MTR_2g097690 | 45.946 | 74 | 34 | 2 | 78 | 151 | 69 | 136 | 1.81e-11 | 63.5 |
MS.gene46832.t1 | MTR_6g027110 | 43.243 | 74 | 37 | 1 | 89 | 157 | 2 | 75 | 1.83e-11 | 62.4 |
MS.gene46832.t1 | MTR_8g022310 | 47.126 | 87 | 39 | 2 | 87 | 167 | 8 | 93 | 2.31e-11 | 63.9 |
MS.gene46832.t1 | MTR_2g435450 | 37.895 | 95 | 57 | 2 | 89 | 182 | 39 | 132 | 8.08e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46832.t1 | AT5G48030 | 58.710 | 465 | 159 | 10 | 1 | 442 | 1 | 455 | 0.0 | 516 |
MS.gene46832.t1 | AT1G28210 | 36.951 | 387 | 220 | 6 | 63 | 429 | 5 | 387 | 4.35e-85 | 266 |
MS.gene46832.t1 | AT1G28210 | 36.951 | 387 | 220 | 6 | 63 | 429 | 5 | 387 | 4.94e-85 | 266 |
MS.gene46832.t1 | AT1G28210 | 36.951 | 387 | 220 | 6 | 63 | 429 | 5 | 387 | 1.07e-84 | 266 |
MS.gene46832.t1 | AT2G22360 | 39.548 | 354 | 186 | 6 | 89 | 425 | 86 | 428 | 1.58e-72 | 235 |
MS.gene46832.t1 | AT4G39960 | 38.950 | 362 | 184 | 8 | 89 | 425 | 85 | 434 | 1.60e-69 | 228 |
MS.gene46832.t1 | AT4G39960 | 38.950 | 362 | 184 | 8 | 89 | 425 | 85 | 434 | 1.60e-69 | 228 |
MS.gene46832.t1 | AT3G17830 | 35.955 | 356 | 208 | 6 | 89 | 425 | 63 | 417 | 2.29e-58 | 200 |
MS.gene46832.t1 | AT1G80030 | 32.873 | 362 | 209 | 6 | 89 | 425 | 75 | 427 | 1.40e-57 | 197 |
MS.gene46832.t1 | AT1G80030 | 32.873 | 362 | 209 | 6 | 89 | 425 | 75 | 427 | 1.40e-57 | 197 |
MS.gene46832.t1 | AT1G80030 | 32.873 | 362 | 209 | 6 | 89 | 425 | 75 | 427 | 1.40e-57 | 197 |
MS.gene46832.t1 | AT1G80030 | 32.873 | 362 | 209 | 6 | 89 | 425 | 75 | 427 | 1.81e-57 | 197 |
MS.gene46832.t1 | AT5G22060 | 30.966 | 352 | 215 | 13 | 90 | 423 | 15 | 356 | 7.97e-35 | 134 |
MS.gene46832.t1 | AT3G44110 | 32.123 | 358 | 202 | 14 | 90 | 423 | 15 | 355 | 2.64e-32 | 127 |
MS.gene46832.t1 | AT3G62600 | 29.023 | 348 | 207 | 7 | 88 | 424 | 25 | 343 | 1.58e-30 | 121 |
MS.gene46832.t1 | AT3G44110 | 33.981 | 309 | 166 | 12 | 90 | 377 | 15 | 306 | 8.16e-30 | 119 |
MS.gene46832.t1 | AT5G01390 | 29.738 | 343 | 209 | 10 | 89 | 419 | 4 | 326 | 7.45e-27 | 110 |
MS.gene46832.t1 | AT2G20560 | 28.655 | 342 | 217 | 8 | 89 | 419 | 4 | 329 | 7.84e-26 | 107 |
MS.gene46832.t1 | AT1G10350 | 27.273 | 341 | 233 | 7 | 89 | 419 | 4 | 339 | 1.39e-25 | 107 |
MS.gene46832.t1 | AT5G25530 | 27.536 | 345 | 226 | 10 | 89 | 423 | 4 | 334 | 1.81e-24 | 103 |
MS.gene46832.t1 | AT3G08910 | 28.657 | 335 | 210 | 9 | 89 | 419 | 4 | 313 | 2.12e-23 | 100 |
MS.gene46832.t1 | AT5G25530 | 26.912 | 353 | 226 | 11 | 89 | 423 | 4 | 342 | 8.15e-22 | 96.7 |
MS.gene46832.t1 | AT1G59725 | 26.404 | 356 | 199 | 11 | 89 | 419 | 4 | 321 | 8.68e-22 | 96.3 |
MS.gene46832.t1 | AT4G39150 | 43.434 | 99 | 50 | 1 | 89 | 187 | 6 | 98 | 4.14e-17 | 82.8 |
MS.gene46832.t1 | AT4G39150 | 43.434 | 99 | 50 | 1 | 89 | 187 | 6 | 98 | 4.14e-17 | 82.8 |
MS.gene46832.t1 | AT4G39150 | 43.434 | 99 | 50 | 1 | 89 | 187 | 6 | 98 | 4.14e-17 | 82.8 |
MS.gene46832.t1 | AT3G12170 | 42.308 | 104 | 57 | 1 | 64 | 167 | 22 | 122 | 4.73e-17 | 82.0 |
MS.gene46832.t1 | AT5G01390 | 44.037 | 109 | 58 | 2 | 89 | 194 | 4 | 112 | 5.00e-17 | 80.5 |
MS.gene46832.t1 | AT5G01390 | 44.037 | 109 | 58 | 2 | 89 | 194 | 4 | 112 | 1.17e-16 | 79.3 |
MS.gene46832.t1 | AT5G01390 | 44.037 | 109 | 58 | 2 | 89 | 194 | 4 | 112 | 1.33e-16 | 80.1 |
MS.gene46832.t1 | AT5G06910 | 56.923 | 65 | 28 | 0 | 90 | 154 | 30 | 94 | 2.01e-16 | 79.7 |
MS.gene46832.t1 | AT3G12170 | 51.250 | 80 | 36 | 1 | 88 | 167 | 10 | 86 | 4.49e-16 | 78.6 |
MS.gene46832.t1 | AT4G28480 | 43.519 | 108 | 54 | 4 | 89 | 189 | 4 | 111 | 4.54e-16 | 79.7 |
MS.gene46832.t1 | AT4G28480 | 43.519 | 108 | 54 | 4 | 89 | 189 | 4 | 111 | 4.58e-16 | 79.0 |
MS.gene46832.t1 | AT2G21510 | 40.404 | 99 | 53 | 1 | 89 | 187 | 6 | 98 | 6.61e-16 | 79.0 |
MS.gene46832.t1 | AT2G21510 | 40.404 | 99 | 53 | 1 | 89 | 187 | 6 | 98 | 7.80e-16 | 79.0 |
MS.gene46832.t1 | AT2G21510 | 40.404 | 99 | 53 | 1 | 89 | 187 | 6 | 98 | 7.80e-16 | 79.0 |
MS.gene46832.t1 | AT2G21510 | 40.404 | 99 | 53 | 1 | 89 | 187 | 6 | 98 | 8.44e-16 | 79.0 |
MS.gene46832.t1 | AT2G21510 | 40.404 | 99 | 53 | 1 | 89 | 187 | 6 | 98 | 8.44e-16 | 79.0 |
MS.gene46832.t1 | AT1G21080 | 52.857 | 70 | 33 | 0 | 89 | 158 | 6 | 75 | 8.48e-16 | 79.3 |
MS.gene46832.t1 | AT1G21080 | 52.857 | 70 | 33 | 0 | 89 | 158 | 6 | 75 | 9.21e-16 | 79.3 |
MS.gene46832.t1 | AT1G76700 | 53.623 | 69 | 32 | 0 | 89 | 157 | 6 | 74 | 1.06e-15 | 79.0 |
MS.gene46832.t1 | AT1G59980 | 39.844 | 128 | 68 | 5 | 91 | 217 | 25 | 144 | 6.09e-15 | 76.3 |
MS.gene46832.t1 | AT1G59980 | 39.844 | 128 | 68 | 5 | 91 | 217 | 25 | 144 | 1.16e-14 | 75.9 |
MS.gene46832.t1 | AT1G68370 | 44.706 | 85 | 45 | 1 | 76 | 158 | 2 | 86 | 2.03e-14 | 75.1 |
MS.gene46832.t1 | AT1G77020 | 52.308 | 65 | 31 | 0 | 90 | 154 | 7 | 71 | 3.13e-14 | 74.3 |
MS.gene46832.t1 | AT1G71000 | 42.857 | 70 | 36 | 1 | 86 | 151 | 5 | 74 | 6.05e-14 | 70.1 |
MS.gene46832.t1 | AT3G08970 | 54.412 | 68 | 30 | 1 | 89 | 156 | 27 | 93 | 1.75e-13 | 72.8 |
MS.gene46832.t1 | AT3G08970 | 54.412 | 68 | 30 | 1 | 89 | 156 | 27 | 93 | 1.75e-13 | 72.8 |
MS.gene46832.t1 | AT1G24120 | 47.222 | 72 | 38 | 0 | 86 | 157 | 17 | 88 | 1.83e-13 | 72.4 |
MS.gene46832.t1 | AT1G56300 | 43.243 | 74 | 38 | 1 | 82 | 151 | 6 | 79 | 3.37e-13 | 66.6 |
MS.gene46832.t1 | AT5G03160 | 53.030 | 66 | 30 | 1 | 88 | 152 | 369 | 434 | 5.40e-13 | 71.2 |
MS.gene46832.t1 | AT1G71000 | 45.455 | 66 | 32 | 1 | 90 | 151 | 9 | 74 | 5.41e-13 | 67.4 |
MS.gene46832.t1 | AT1G56300 | 43.243 | 74 | 38 | 1 | 82 | 151 | 6 | 79 | 8.19e-13 | 66.6 |
MS.gene46832.t1 | AT3G47940 | 48.611 | 72 | 35 | 1 | 89 | 158 | 4 | 75 | 1.06e-12 | 69.7 |
MS.gene46832.t1 | AT2G33735 | 46.154 | 65 | 35 | 0 | 88 | 152 | 21 | 85 | 1.12e-12 | 65.1 |
MS.gene46832.t1 | AT2G33735 | 46.154 | 65 | 35 | 0 | 88 | 152 | 21 | 85 | 1.12e-12 | 65.1 |
MS.gene46832.t1 | AT5G16650 | 47.761 | 67 | 35 | 0 | 88 | 154 | 10 | 76 | 2.09e-12 | 64.7 |
MS.gene46832.t1 | AT5G05750 | 36.559 | 93 | 56 | 2 | 88 | 178 | 113 | 204 | 4.56e-12 | 67.0 |
MS.gene46832.t1 | AT2G41000 | 40.426 | 94 | 48 | 2 | 89 | 177 | 3 | 93 | 5.12e-12 | 65.5 |
MS.gene46832.t1 | AT5G16650 | 47.761 | 67 | 35 | 0 | 88 | 154 | 10 | 76 | 1.21e-11 | 63.5 |
MS.gene46832.t1 | AT1G61770 | 45.455 | 77 | 38 | 3 | 87 | 160 | 32 | 107 | 1.37e-11 | 65.5 |
MS.gene46832.t1 | AT5G49060 | 48.485 | 66 | 33 | 1 | 89 | 154 | 99 | 163 | 2.13e-11 | 65.5 |
MS.gene46832.t1 | AT5G49060 | 48.485 | 66 | 33 | 1 | 89 | 154 | 99 | 163 | 2.13e-11 | 65.5 |
MS.gene46832.t1 | AT1G79940 | 34.074 | 135 | 81 | 6 | 27 | 155 | 33 | 165 | 4.46e-11 | 65.5 |
MS.gene46832.t1 | AT1G79940 | 34.074 | 135 | 81 | 6 | 27 | 155 | 33 | 165 | 4.46e-11 | 65.5 |
MS.gene46832.t1 | AT1G79940 | 34.074 | 135 | 81 | 6 | 27 | 155 | 33 | 165 | 4.46e-11 | 65.5 |
MS.gene46832.t1 | AT2G41000 | 40.426 | 94 | 48 | 2 | 89 | 177 | 3 | 93 | 4.80e-11 | 62.0 |
MS.gene46832.t1 | AT1G79940 | 34.074 | 135 | 81 | 6 | 27 | 155 | 33 | 165 | 4.91e-11 | 65.1 |
MS.gene46832.t1 | AT5G18140 | 45.455 | 66 | 35 | 1 | 88 | 153 | 76 | 140 | 9.11e-11 | 63.5 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGAGCAGCAAATACTTATT+TGG | 0.161907 | 3.3:+20002787 | MS.gene46832:CDS |
GTCAGTTAAATTGGATATTA+TGG | 0.190985 | 3.3:+20006664 | MS.gene46832:CDS |
TTACAACGCTTACAGGTTTC+AGG | 0.193088 | 3.3:-20005605 | None:intergenic |
CTGTACAAGCTGGCATATTT+AGG | 0.236713 | 3.3:+20005759 | MS.gene46832:CDS |
AGCAACCAAGTCAGTTAAAT+TGG | 0.248112 | 3.3:+20006655 | MS.gene46832:CDS |
GGAAAAGCTGCTTCGGCTTC+TGG | 0.249779 | 3.3:+20011271 | MS.gene46832:CDS |
TGACAACAATGAAACCATTA+AGG | 0.276719 | 3.3:+20007345 | MS.gene46832:CDS |
ATTCAGGTCCCAACTCTTAC+TGG | 0.281089 | 3.3:+20010319 | MS.gene46832:CDS |
ATTTGTTGCGGAGGAGATTA+GGG | 0.282580 | 3.3:-20001703 | None:intergenic |
GGAGCAGCAAATACTTATTT+GGG | 0.282978 | 3.3:+20002788 | MS.gene46832:CDS |
TGACCCTTTACAACGCTTAC+AGG | 0.286362 | 3.3:-20005612 | None:intergenic |
ATTGAAGAACTGGGTGCTAT+TGG | 0.286647 | 3.3:+20002766 | MS.gene46832:CDS |
TTCTGACCGTGCTGTGTTCC+AGG | 0.297907 | 3.3:-20010450 | None:intergenic |
GAAATAAAGAAAGCATACTA+TGG | 0.314834 | 3.3:+20003123 | MS.gene46832:CDS |
CCATTTGGAGATGGTGGCTT+TGG | 0.317451 | 3.3:+20004726 | MS.gene46832:CDS |
AATCGTTCTTCCAAAGTTAC+TGG | 0.320508 | 3.3:+20001879 | MS.gene46832:CDS |
CAATATGAATCTTCCGATAA+AGG | 0.341538 | 3.3:+20011250 | MS.gene46832:CDS |
GATGGTGGCTTTGGTCCATT+TGG | 0.342616 | 3.3:+20004711 | MS.gene46832:CDS |
GTAAACCGAGAAAATGGTTC+TGG | 0.348842 | 3.3:+20004687 | MS.gene46832:CDS |
GGGATATAGGACATTGAATT+CGG | 0.355631 | 3.3:+20001848 | MS.gene46832:CDS |
CTCGGTTTACAAAACCTTCA+TGG | 0.359083 | 3.3:-20004674 | None:intergenic |
GGATCATCTTTGTTTGTGTC+AGG | 0.359672 | 3.3:-20003772 | None:intergenic |
TGTTTGAAATGTAATGGTTT+TGG | 0.360146 | 3.3:-20005406 | None:intergenic |
GATTTGTTGCGGAGGAGATT+AGG | 0.361923 | 3.3:-20001704 | None:intergenic |
CTGAATGGTTCCGCCCAAAA+TGG | 0.371806 | 3.3:-20010302 | None:intergenic |
CATATCTGTTTGAAATGTAA+TGG | 0.373827 | 3.3:-20005412 | None:intergenic |
GGTGGGAGTGGGGTTCCTCC+TGG | 0.384899 | 3.3:+20005575 | MS.gene46832:intron |
AAAATAATTTCCAGTAACTT+TGG | 0.386866 | 3.3:-20001889 | None:intergenic |
ATGGTGTTAAATTGAAGAAC+TGG | 0.387127 | 3.3:+20002756 | MS.gene46832:CDS |
ATCACCAGGTCGATCTCCTT+CGG | 0.389962 | 3.3:-20007392 | None:intergenic |
TTATCCATGACCTCTTTAAT+CGG | 0.395890 | 3.3:+20005231 | MS.gene46832:CDS |
AGAAATTTCAAGAAGTTTCA+AGG | 0.402733 | 3.3:+20003806 | MS.gene46832:CDS |
GAGTGTTACAAAGGGGATAT+AGG | 0.403157 | 3.3:+20001835 | MS.gene46832:CDS |
TTTAACTGACTTGGTTGCTC+TGG | 0.411207 | 3.3:-20006651 | None:intergenic |
TTGAAGAACTGGGTGCTATT+GGG | 0.413042 | 3.3:+20002767 | MS.gene46832:CDS |
GGCTTTGGTCCATTTGGAGA+TGG | 0.416358 | 3.3:+20004717 | MS.gene46832:CDS |
GGTTCTGGAGATGGTGGCTT+TGG | 0.418459 | 3.3:+20004702 | MS.gene46832:CDS |
TGAACAATTGCAGGTGGGAG+TGG | 0.421996 | 3.3:+20005563 | MS.gene46832:intron |
CTTATTTCGCAGGTGCGTCC+TGG | 0.427230 | 3.3:+20010432 | MS.gene46832:intron |
TCACCAGGTCGATCTCCTTC+GGG | 0.432930 | 3.3:-20007391 | None:intergenic |
CCCCAAATGGTTCGCTCCAA+TGG | 0.433535 | 3.3:+20001653 | None:intergenic |
GACTACATGTGGTGCATGTA+AGG | 0.435204 | 3.3:+20005787 | MS.gene46832:CDS |
TCCACGGACAGCTTCCATAA+AGG | 0.438460 | 3.3:-20005379 | None:intergenic |
TACTGGGGATGTTGTTGTCA+AGG | 0.438586 | 3.3:+20010336 | MS.gene46832:CDS |
CGATAAAGGAAAAGCTGCTT+CGG | 0.441523 | 3.3:+20011264 | MS.gene46832:CDS |
GAACAATTGCAGGTGGGAGT+GGG | 0.444602 | 3.3:+20005564 | MS.gene46832:intron |
CAGGTTTCAGGTCTTGTACC+AGG | 0.447146 | 3.3:-20005593 | None:intergenic |
AGAAGTTTCAAGGGCATATG+AGG | 0.447678 | 3.3:+20003816 | MS.gene46832:CDS |
ACCATTAAGGTTTACAAAAG+TGG | 0.448952 | 3.3:+20007358 | MS.gene46832:CDS |
GGATATAGGACATTGAATTC+GGG | 0.453346 | 3.3:+20001849 | MS.gene46832:CDS |
GGGGCAACTAGATCCATTCA+TGG | 0.455696 | 3.3:+20002809 | MS.gene46832:CDS |
ATTTATACCTGATCCATGAA+TGG | 0.455766 | 3.3:-20002822 | None:intergenic |
ACTAGATCCATTCATGGATC+AGG | 0.467009 | 3.3:+20002815 | MS.gene46832:CDS |
GAAACCTGTAAGCGTTGTAA+AGG | 0.469131 | 3.3:+20005608 | MS.gene46832:CDS |
AAGAAGAAGCTTGACGCCAT+TGG | 0.469160 | 3.3:-20001669 | None:intergenic |
TAATCGGAACATTGGCGGAC+AGG | 0.471543 | 3.3:+20005247 | MS.gene46832:CDS |
ATTCCCGCTGTCTATCTGTC+AGG | 0.476235 | 3.3:-20011201 | None:intergenic |
GGTGAATTTCAGGTATATGA+AGG | 0.477900 | 3.3:+20001813 | MS.gene46832:intron |
CTCTTTAATCGGAACATTGG+CGG | 0.480670 | 3.3:+20005242 | MS.gene46832:CDS |
TTCAGGTCCCAACTCTTACT+GGG | 0.483137 | 3.3:+20010320 | MS.gene46832:CDS |
GTTAAATTGGATATTATGGC+TGG | 0.484283 | 3.3:+20006668 | MS.gene46832:CDS |
AAATAAAGAAAGCATACTAT+GGG | 0.491279 | 3.3:+20003124 | MS.gene46832:CDS |
AATATCCAATTTAACTGACT+TGG | 0.496445 | 3.3:-20006660 | None:intergenic |
CGAGAAAATGGTTCTGGAGA+TGG | 0.499609 | 3.3:+20004693 | MS.gene46832:CDS |
TGTAAGCGTTGTAAAGGGTC+AGG | 0.503182 | 3.3:+20005614 | MS.gene46832:CDS |
GATCCTTCTCTACGGAAGAC+AGG | 0.514946 | 3.3:-20007545 | None:intergenic |
GAAATTTCAAGAAGTTTCAA+GGG | 0.515825 | 3.3:+20003807 | MS.gene46832:CDS |
AAACCTGTAAGCGTTGTAAA+GGG | 0.519876 | 3.3:+20005609 | MS.gene46832:CDS |
CAACATCCCCAGTAAGAGTT+GGG | 0.525837 | 3.3:-20010327 | None:intergenic |
CCAAAGCCACCATCTCCAAA+TGG | 0.531483 | 3.3:-20004726 | None:intergenic |
ATATGAAGGAGTGTTACAAA+GGG | 0.535315 | 3.3:+20001827 | MS.gene46832:CDS |
TCCTTTATGGAAGCTGTCCG+TGG | 0.536632 | 3.3:+20005378 | MS.gene46832:CDS |
TGTGGTGCATGTAAGGGATC+TGG | 0.541793 | 3.3:+20005794 | MS.gene46832:CDS |
GACCTCTTTAATCGGAACAT+TGG | 0.548612 | 3.3:+20005239 | MS.gene46832:CDS |
AAAGCGTCAAGAGTATGATC+AGG | 0.550196 | 3.3:+20003980 | MS.gene46832:CDS |
GATATGTAGGTTGGCCATGA+AGG | 0.551132 | 3.3:+20004660 | MS.gene46832:intron |
TTTGGTCCATTTGGAGATGG+TGG | 0.551384 | 3.3:+20004720 | MS.gene46832:CDS |
TCATAAAAGTCCTTTGCCAA+TGG | 0.553690 | 3.3:-20003066 | None:intergenic |
ACAACATCCCCAGTAAGAGT+TGG | 0.560824 | 3.3:-20010328 | None:intergenic |
GAGTTTCTGCAAGTCATGCA+AGG | 0.561847 | 3.3:+20006616 | MS.gene46832:intron |
CGCCAATGTTCCGATTAAAG+AGG | 0.565093 | 3.3:-20005241 | None:intergenic |
GATCCTGTCTTCCGTAGAGA+AGG | 0.566629 | 3.3:+20007542 | MS.gene46832:CDS |
TGTTCCGATTAAAGAGGTCA+TGG | 0.566633 | 3.3:-20005235 | None:intergenic |
TATATGAAGGAGTGTTACAA+AGG | 0.567598 | 3.3:+20001826 | MS.gene46832:CDS |
AACAATTGCAGGTGGGAGTG+GGG | 0.568110 | 3.3:+20005565 | MS.gene46832:intron |
TGATCTTTACGTTACTGTCA+AGG | 0.568375 | 3.3:+20007411 | MS.gene46832:CDS |
ATACTGATTGCAGTTGGAGA+TGG | 0.568551 | 3.3:+20002737 | MS.gene46832:intron |
CAAGTCATGCAAGGGTGCAA+AGG | 0.570979 | 3.3:+20006625 | MS.gene46832:CDS |
CGGCAGACATCTGTACAAGC+TGG | 0.577081 | 3.3:+20005749 | MS.gene46832:intron |
ACAAGCTGGCATATTTAGGA+TGG | 0.580770 | 3.3:+20005763 | MS.gene46832:CDS |
AGTAAGAGTTGGGACCTGAA+TGG | 0.587664 | 3.3:-20010317 | None:intergenic |
GAAAGTATACAGATTTGTTG+CGG | 0.591460 | 3.3:-20001715 | None:intergenic |
TGTCTTCCGTAGAGAAGGAT+CGG | 0.591949 | 3.3:+20007547 | MS.gene46832:CDS |
TGGAACACAGCACGGTCAGA+AGG | 0.596779 | 3.3:+20010452 | MS.gene46832:CDS |
GAATATCCGATCCTTCTCTA+CGG | 0.600340 | 3.3:-20007553 | None:intergenic |
ACTACATGTGGTGCATGTAA+GGG | 0.605467 | 3.3:+20005788 | MS.gene46832:CDS |
GAGCAGCAAATACTTATTTG+GGG | 0.607798 | 3.3:+20002789 | MS.gene46832:CDS |
TTTGTTGCGGAGGAGATTAG+GGG | 0.608124 | 3.3:-20001702 | None:intergenic |
ATTAAGGTTTACAAAAGTGG+TGG | 0.608388 | 3.3:+20007361 | MS.gene46832:CDS |
GATATGATTTGTAACACTTG+TGG | 0.611871 | 3.3:+20005429 | MS.gene46832:CDS |
AAACAAAGATGATCCTGAAG+CGG | 0.617397 | 3.3:+20003780 | MS.gene46832:CDS |
AAGGTGGTTCTGAAACAGAA+AGG | 0.617446 | 3.3:+20010471 | MS.gene46832:CDS |
CATTGGCGGACAGGATGTCA+AGG | 0.620017 | 3.3:+20005256 | MS.gene46832:CDS |
GGGATCTGGCAAAATTGTCA+AGG | 0.620983 | 3.3:+20005808 | MS.gene46832:CDS |
GAAAATGGTTCTGGAGATGG+TGG | 0.624903 | 3.3:+20004696 | MS.gene46832:CDS |
AAACCTGACAGATAGACAGC+GGG | 0.627667 | 3.3:+20011198 | MS.gene46832:CDS |
AGTATACAGATTTGTTGCGG+AGG | 0.639618 | 3.3:-20001712 | None:intergenic |
AGTTTCTGCAAGTCATGCAA+GGG | 0.642039 | 3.3:+20006617 | MS.gene46832:CDS |
TCAGGTCCCAACTCTTACTG+GGG | 0.642067 | 3.3:+20010321 | MS.gene46832:CDS |
GTGCGTCCTGGAACACAGCA+CGG | 0.645003 | 3.3:+20010444 | MS.gene46832:CDS |
AGCAGCAAATACTTATTTGG+GGG | 0.661568 | 3.3:+20002790 | MS.gene46832:CDS |
ACAGTAACGTAAAGATCACC+AGG | 0.663117 | 3.3:-20007406 | None:intergenic |
TATGAAGGAGTGTTACAAAG+GGG | 0.676481 | 3.3:+20001828 | MS.gene46832:CDS |
TGGTGTTAAATTGAAGAACT+GGG | 0.678693 | 3.3:+20002757 | MS.gene46832:CDS |
AGTGGTGGTGCAGATCCCGA+AGG | 0.680845 | 3.3:+20007376 | MS.gene46832:CDS |
GCGTTGTAAAGGGTCAGGAG+TGG | 0.682796 | 3.3:+20005619 | MS.gene46832:CDS |
TTTAGGATGGAGACTACATG+TGG | 0.682836 | 3.3:+20005776 | MS.gene46832:CDS |
AACACAGCACGGTCAGAAGG+TGG | 0.683119 | 3.3:+20010455 | MS.gene46832:CDS |
GATCCCGAAGGAGATCGACC+TGG | 0.690632 | 3.3:+20007388 | MS.gene46832:CDS |
AATAAAGAAAGCATACTATG+GGG | 0.714970 | 3.3:+20003125 | MS.gene46832:CDS |
GAAACCTGACAGATAGACAG+CGG | 0.716980 | 3.3:+20011197 | MS.gene46832:intron |
GTTTCAGGTCTTGTACCAGG+AGG | 0.745812 | 3.3:-20005590 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 20001659 | 20011297 | 20001659 | ID=MS.gene46832 |
chr3.3 | mRNA | 20001659 | 20011297 | 20001659 | ID=MS.gene46832.t1;Parent=MS.gene46832 |
chr3.3 | exon | 20001659 | 20001727 | 20001659 | ID=MS.gene46832.t1.exon1;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20001659 | 20001727 | 20001659 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20001825 | 20001918 | 20001825 | ID=MS.gene46832.t1.exon2;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20001825 | 20001918 | 20001825 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20002750 | 20002836 | 20002750 | ID=MS.gene46832.t1.exon3;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20002750 | 20002836 | 20002750 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20003064 | 20003146 | 20003064 | ID=MS.gene46832.t1.exon4;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20003064 | 20003146 | 20003064 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20003754 | 20003837 | 20003754 | ID=MS.gene46832.t1.exon5;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20003754 | 20003837 | 20003754 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20003963 | 20004001 | 20003963 | ID=MS.gene46832.t1.exon6;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20003963 | 20004001 | 20003963 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20004669 | 20004758 | 20004669 | ID=MS.gene46832.t1.exon7;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20004669 | 20004758 | 20004669 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20005227 | 20005277 | 20005227 | ID=MS.gene46832.t1.exon8;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20005227 | 20005277 | 20005227 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20005363 | 20005450 | 20005363 | ID=MS.gene46832.t1.exon9;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20005363 | 20005450 | 20005363 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20005576 | 20005640 | 20005576 | ID=MS.gene46832.t1.exon10;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20005576 | 20005640 | 20005576 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20005755 | 20005829 | 20005755 | ID=MS.gene46832.t1.exon11;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20005755 | 20005829 | 20005755 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20006617 | 20006689 | 20006617 | ID=MS.gene46832.t1.exon12;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20006617 | 20006689 | 20006617 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20007341 | 20007432 | 20007341 | ID=MS.gene46832.t1.exon13;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20007341 | 20007432 | 20007341 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20007533 | 20007604 | 20007533 | ID=MS.gene46832.t1.exon14;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20007533 | 20007604 | 20007533 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20010301 | 20010357 | 20010301 | ID=MS.gene46832.t1.exon15;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20010301 | 20010357 | 20010301 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20010444 | 20010492 | 20010444 | ID=MS.gene46832.t1.exon16;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20010444 | 20010492 | 20010444 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20010603 | 20010669 | 20010603 | ID=MS.gene46832.t1.exon17;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20010603 | 20010669 | 20010603 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
chr3.3 | exon | 20011198 | 20011297 | 20011198 | ID=MS.gene46832.t1.exon18;Parent=MS.gene46832.t1 |
chr3.3 | CDS | 20011198 | 20011297 | 20011198 | ID=cds.MS.gene46832.t1;Parent=MS.gene46832.t1 |
Gene Sequence |
Protein sequence |