AlfalfaGEDB | MS.gene045133

M. sativa cultivar XinJiangDaYe / MS.gene045133

KEGG: K03686
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0006457 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0017076 GO:0030554 GO:0031072 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0050896 GO:0051082 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00226.34 PF00684.22 PF01556.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045133.t1	XP_024635345.1	98.9	438	5	0	1	438	1	438	1.20E-232	815.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045133.t1	Q9SJZ7	72.9	439	112	5	1	434	1	437	2.2e-169	596.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045133.t1	G7J3Q2	98.9	438	5	0	1	438	1	438	8.8e-233	815.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene010151	MS.gene045133	PPI
MS.gene013681	MS.gene045133	PPI
MS.gene024753	MS.gene045133	PPI
MS.gene02491	MS.gene045133	PPI
MS.gene02648	MS.gene045133	PPI
MS.gene027071	MS.gene045133	PPI
MS.gene027073	MS.gene045133	PPI
MS.gene027074	MS.gene045133	PPI
MS.gene027075	MS.gene045133	PPI
MS.gene045133	MS.gene75493	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045133.t1	MTR_3g087030	98.858	438	5	0	1	438	1	438	0.0	890
MS.gene045133.t1	MTR_2g104030	48.744	398	188	5	41	428	34	425	2.17e-129	383
MS.gene045133.t1	MTR_6g471050	44.512	328	173	3	109	428	8	334	6.77e-88	275
MS.gene045133.t1	MTR_3g027580	40.845	355	184	8	82	427	89	426	3.40e-71	231
MS.gene045133.t1	MTR_4g023470	38.736	364	208	6	61	422	71	421	2.66e-70	229
MS.gene045133.t1	MTR_5g065160	34.140	372	211	10	79	434	79	432	3.08e-63	211
MS.gene045133.t1	MTR_5g065160	34.140	372	211	10	79	434	80	433	3.12e-63	211
MS.gene045133.t1	MTR_5g065160	34.140	372	211	10	79	434	80	433	5.83e-63	211
MS.gene045133.t1	MTR_5g065160	34.140	372	211	10	79	434	73	426	6.04e-63	210
MS.gene045133.t1	MTR_8g006430	34.615	338	205	9	83	411	15	345	2.54e-52	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045133.t1	AT2G22360	72.210	439	115	5	1	434	1	437	0.0	654
MS.gene045133.t1	AT4G39960	67.929	449	131	5	1	438	1	447	0.0	620
MS.gene045133.t1	AT4G39960	67.929	449	131	5	1	438	1	447	0.0	620
MS.gene045133.t1	AT1G80030	51.743	373	162	7	70	428	62	430	1.54e-125	373
MS.gene045133.t1	AT1G80030	51.743	373	162	7	70	428	62	430	1.96e-125	373
MS.gene045133.t1	AT1G80030	51.743	373	162	7	70	428	62	430	1.96e-125	373
MS.gene045133.t1	AT1G80030	51.743	373	162	7	70	428	62	430	1.96e-125	373
MS.gene045133.t1	AT3G17830	46.076	395	196	6	42	425	29	417	1.75e-106	325
MS.gene045133.t1	AT5G48030	39.948	383	208	8	60	432	75	445	3.69e-76	245
MS.gene045133.t1	AT1G28210	33.994	353	211	6	82	427	48	385	1.12e-57	195

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Find 137 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATTGAGGAACTCT+CGG	0.528888	3.1:-69780919	MS.gene045133:CDS
AAAGGTTCACCGGGATTTGG+TGG	0.502293	3.1:-69781815	MS.gene045133:CDS
AACAAAGCGGATAAGTCTCA+AGG	0.598548	3.1:-69781312	MS.gene045133:CDS
AAGGTTCACCGGGATTTGGT+GGG	0.517220	3.1:-69781814	MS.gene045133:CDS
AATACTCACTTGTTCACATC+TGG	0.408035	3.1:+69782360	None:intergenic
AATCTTGGGGACTACAATTA+AGG	0.292885	3.1:-69781114	MS.gene045133:CDS
ACACATGTGGTGGTCAGGGA+CGG	0.560533	3.1:-69781460	MS.gene045133:CDS
ACACTTGTTATGGCAAAGAA+AGG	0.539668	3.1:-69781032	MS.gene045133:CDS
ACCACCACATGTGTTACATC+TGG	0.476919	3.1:+69781469	None:intergenic
ACCAGGATCAACACTTGTTA+TGG	0.426673	3.1:-69781042	MS.gene045133:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAGACAATTGACTAA+TGG	+	chr3.1:69781637-69781656	None:intergenic	30.0%
AAAACTGTTCCTAATGAGTA+AGG	+	chr3.1:69782326-69782345	None:intergenic	30.0%
AAATCATAACAGTCAGAGAA+GGG	+	chr3.1:69782772-69782791	None:intergenic	30.0%
AAATTCTCCATAATCTTTGG+AGG	+	chr3.1:69784697-69784716	None:intergenic	30.0%
AACAAAATAAACAGCCGTTT+AGG	+	chr3.1:69783663-69783682	None:intergenic	30.0%
ACAAAATAAACAGCCGTTTA+GGG	+	chr3.1:69783662-69783681	None:intergenic	30.0%
ACACAAGAATCAATTCTACT+TGG	+	chr3.1:69781463-69781482	None:intergenic	30.0%
ACTATGACCATCCAATATAT+TGG	-	chr3.1:69782644-69782663	MS.gene045133:intron	30.0%
AGAAAGCAGATAACTTCAAT+GGG	+	chr3.1:69784141-69784160	None:intergenic	30.0%
ATATTCTTCTTATTCAGCAG+AGG	+	chr3.1:69785458-69785477	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	69780881	69785601	69780881	ID=MS.gene045133
chr3.1	mRNA	69780881	69785601	69780881	ID=MS.gene045133.t1;Parent=MS.gene045133
chr3.1	exon	69785495	69785601	69785495	ID=MS.gene045133.t1.exon1;Parent=MS.gene045133.t1
chr3.1	CDS	69785495	69785601	69785495	ID=cds.MS.gene045133.t1;Parent=MS.gene045133.t1
chr3.1	exon	69783945	69784080	69783945	ID=MS.gene045133.t1.exon2;Parent=MS.gene045133.t1
chr3.1	CDS	69783945	69784080	69783945	ID=cds.MS.gene045133.t1;Parent=MS.gene045133.t1
chr3.1	exon	69783729	69783786	69783729	ID=MS.gene045133.t1.exon3;Parent=MS.gene045133.t1
chr3.1	CDS	69783729	69783786	69783729	ID=cds.MS.gene045133.t1;Parent=MS.gene045133.t1
chr3.1	exon	69782369	69782411	69782369	ID=MS.gene045133.t1.exon4;Parent=MS.gene045133.t1
chr3.1	CDS	69782369	69782411	69782369	ID=cds.MS.gene045133.t1;Parent=MS.gene045133.t1
chr3.1	exon	69781979	69782027	69781979	ID=MS.gene045133.t1.exon5;Parent=MS.gene045133.t1
chr3.1	CDS	69781979	69782027	69781979	ID=cds.MS.gene045133.t1;Parent=MS.gene045133.t1
chr3.1	exon	69781805	69781894	69781805	ID=MS.gene045133.t1.exon6;Parent=MS.gene045133.t1
chr3.1	CDS	69781805	69781894	69781805	ID=cds.MS.gene045133.t1;Parent=MS.gene045133.t1
chr3.1	exon	69780881	69781714	69780881	ID=MS.gene045133.t1.exon7;Parent=MS.gene045133.t1
chr3.1	CDS	69780881	69781714	69780881	ID=cds.MS.gene045133.t1;Parent=MS.gene045133.t1

Gene Sequence

>MS.gene045133

ATGGCAGTTACACCTTTTGGTAGTACATCAGCTACTCAATGGGGAATTCGTCCTCAGATTGTGGCCAGATCCACCACAATAGCCAAGTTTGCATCATCAAGACACAAGTCAGTCTTATGTTTTATTCTTAATTTTCATTCTCTTGTATATTACTTTGAAGGTTGATTTATCTGTCATATTGTGCCCCGGCTATAGCCATAAAAAAGTTTGGTATAAGAATGCGATTTTGTTACTCCAATTGTCGGCTATAGTAGCTGTACTTCTGGATATAGATTCAGATTATCAGAAACTAAGATGTGTTTCTCATTGAAAAGAAATATCCGGCAAGGGCTTATTGCCTGTTTTGGTTAAACCCTGAACTCCTACCGGAGTTGAGAAAAAATGGGGTTTAGTCATTTGAATTTTGTTAAGTTGATTGTAGTGAGTTGAAGTGCATGTTGAGAACGGCAATGAGTTTGGCAGAATCACGGTCTGTCATTGTAATTTTGCCCAACCTTTGGAACTTCAATAAAATCACGGTGTTGTTGTGATTTCATCAAACTCACTGCCAAGAGAAGTGGAATTTTTCAGTTTTTTGCACCAAGTAGAATTGATTCTTGTGTCAGACCCCGCTTAATTATTCACATTTACTCTGCAAAAGTGACTATACTTTATTTTCCAAACCAAATCGTCTCTTCTAAAATCTGTATCAATCGCCTGGCTCTCTTGCTCACCTTTGCATCTAGGACACGATGTCTTCATTTTAAGATGATTCCATTAGTCAATTGTCTGGTTTTTTCTCAATCAATTCTTTAGGGTCTTATGATATCACTTTGAAACAAATCAATTATTTCATCCATGAAATCGCACAAATTGGTAGCACTATTTAGGAAGTCAACAATTTGTGCCATTTGATGAATATGAAATATAATCATGCAACTTTTATCACTGATATGAGTTGCACGATTCAACAATTTATGTTTTTATCTTGCTTTTATGTCGCCAATTCTCATCAATGAATTTGAAGAATCAAATAGGTGCGCCATTGTTAAATGTAAAAAATCCTAAAGGAGCACTACTCAACACAACCTATTTAATAATCAATGCCTCTATTTTCATTCTTCTAAAATACGGAGGGTCTTACAAAGTCACTGGATCAATTGCTTTCTCACAATTTTCGCATACTTTTTCTCTGTTTTTTTTTTTAACTTAGGACATAGAACATTTGTGTTTGTTACATTGTGATTAAATTGCGTTGTGGGTTCCTCATTTTAAATCACTGCATTAAACACTATACATCATTATATGATATATTTGAAGTTATTTTGCATTGAACTTCTGAATCTTACGATTTGATACGATTTACAACTCACTATTCAGATGTTAGGTTTGCGATTCACAATTTATAACTTTGACATCTATTTGTTCAAAAATCAATTTTGAAAAAATTAAAACCAACAGATCCTTACTCATTAGGAACAGTTTTGCAGCATAATTCATTGTGTCGTAGAGTGTAATTCAATCCAATCATTTTTCTTGCAGTGCTACAAGCAGGATAAGCTTTATGGCTGCCCCAAGTTCAACCTTTTTTGCTCGGGATTCCTTGCGTTTTAATATAGGTTCACATCAAACTTTGCATCGTCGAAGGGGATCAAGGTTGATAGTTAGAGCAGATGCAGTAAGTTTTTATTACTTATGCTTTTCTAAGAAACGATGATTTCCTTTTTATATTTTTTTTTACAAGGGTTCCTTGTGAAAGTATTCTTCTTGAAGTTGGTTATATAACTATGACCATCCAATATATTGGCTGAATATCTAATATGTACCCGCATGCAGGACTACTACACCGTCCTTGGGGTGTCAAAAAATTCTACTAAATCTGAAATTAAGACTGGTATGTTTCTGCAGTCCCTTCTCTGACTGTTATGATTTGCCTCCATCATCATTAGTTGATGCGTTCAAATTCAGTGCTTTTATTTACTTATTAGTTGTTGAATTCACGAATGATAATCTCCTTTTATATTATATATCTCTTGCTGTTTCTTTAACATTGACTAATTGAAATACTATTACTAATAAAATGTTTGTGAAGGATGCAAGAGAAGTACTGATAATGAACCTAACAGCTAACTCTGTCAAGAAGTCTGCCAAAACATAGAACAAGAATTAAAGTAACAATATCAAAACTAAATACATTGTTTTTATTTACTCATTAGTTGTTGAATTCTTGAATGACCATTTGTTATCAAAGCTGTGATCTCTGTATTAACAGAAATTAGTGACCACATTAGCCTTAGTCCGTTAACTACGAATGATTAGGATCAGGGTTCTCTACATTTGAGTTTCCTAAATTCTTCTGTATTTAGGTAAACATCTTTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGTGTTGCATATGTATGTTTCCTTGTTGTATGTTGTAAAGCAAAAGCATTGTAATCTTTTGCCTAGATGCGGGAGATGCAAAGATTTGTAACTGCAGGGAATCCAAATCCGAATGATTATCTCATTTAATATAACTCTTGCTACTTCTTTAATCTTAATACCAATACTGAAGAAGGTTCAGATAAAATGTCTGTGAAGGATGTAAGATGAGTAAATCAAATTTAACAGTTAAAACCATCAATGAAGTCTGCCACTTGATAATGCTTGTTGCTAATAATCATGAGACCCTCCCCCAACCCCTAAACGGCTGTTTATTTTGTTTAATGCCAAAAAAGGACATGGGGGGCTAGCTTTCCAAACCAAATTTGAAACTTTCAAAATTAATCGTCTTGATTGCTCTTTGGTATTGTATTGCGAGGCTTTCTGTATAGACCAACATAAACCAAAACTCGAATCCTTGTACGTGGTCCTCTTGGAAAACTTCCTCTCAAGACTGCCGAAGTTCAAACTAAACATTTATTTCATTTAACTTTTTTTTTTGGTAATCAATGCAGGAAAGGTTTGGAGAAGTTTAAAATTAGTATCAGAAACATCAATTACTCGGGTTAAGCTATTATTATAGCTAGATGCTATGTGTGATTTACTTGGTTATGCATTTTCCCCCATGGTATCATTGCATTGTTAACTCTTTCTATTGTAAATGTTTCAGCTTACCGGAAGCTAGCCCGAAATTATCATCCAGATGTGAACAAGTGAGTATTTTTTTTTCCTCACTTCCCATTGAAGTTATCTGCTTTCTAATATCCGTCTTTTGCTCTGTTCCCACTCTTTTTTTCCTTTTCTAGATTTCACTATTGCTATGGACAAAATGGTCCGGGTGTCTTAGATTATACCAATGCTTGCAGCATGTCATTTTTAAATCAATTTTTTTGTACATTCCTGAATTGCCTGTTATATGAAGTCGTTTAGCTAAGTGCATTTTCACCTGTCATGCCATAATTTCTAGTTGCATAATTTTTTTTCACATGGTCATAATCATTTATTAACGTTGCTTATCGTTGACCTATATATGTGTATTCACTTTATGCTGCAGAGATCCTGGTGCAGAAGAGAAATTTAAGGAAATCAGTAATGCGTACGAGGTAAAACTAGAGGATAATAAACACAACTGACCCTAATTCATGGTTAGTTCATAACTGATCTTATGTAACTATAATCCTTTTCAGGTCTTGTCAGATGATGAGAAACGGTCCATATATGACAAATTTGGGGAGGCAGGGCTTAAAGGTTCACCGGGATTTGGTGGGGGCATGGGGGTAAGTTACCAAGTTACCTCCAAAGATTATGGAGAATTTTAACTTGTCATAACATTGTTTTTGATAAATGTAAAATCTTTGTGATTATAGGATTTCAGCAACCCTTTTGATCTGTTTGAGTCGCTATTTGAGGGCATGGATGGTCGCAGCAGACAATCTTGGAATGGAGCAATGAATGGCGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCTGTTTTCGGAGTGGAAAAGGAGATAGAGATTAGGCGACTAGAGAAGTGTGGTACTTGCGATGGTTCAGGAGCTAAACCAGGGACTAAATCATCCAGATGTAACACATGTGGTGGTCAGGGACGGGTTGTCACTCAAACAAGGACTCCATTGGGTATCTTTCAGCAGTCTATGACTTGCTCGTCTTGCAATGGGACTGGAGAAACTCGAACCCCTTGCAGTACATGTTCTGGGGATGGCCGGGTGAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCAGCCGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGTAACTCTGGAAAGAAAGGTGGTTCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCGGATCCCGTGCTTAAACGAGAAGACACCAACATTTTATATTCTTGTAAAGTGTCTTATATTGATGCAATCTTGGGGACTACAATTAAGGTTCCGACTGTAGATGGAATGGTGGATTTGAAAATCCCATCTGGGACACAACCAGGATCAACACTTGTTATGGCAAAGAAAGGTGTTCCTCTGCTGAATAAGAAGAATATGAGGGGCGATCAATTCGTTCGAGTGCAAGTTGAGATTCCTAAAAAACTGAGCAGCGATGAGAGAAAACTGATTGAGGAACTCTCGGAGTTGAGCAAAGGCAAGACTGCCGCCGGTATGAGATGA

Protein sequence

>MS.gene045133.t1

MAVTPFGSTSATQWGIRPQIVARSTTIAKFASSRHNATSRISFMAAPSSTFFARDSLRFNIGSHQTLHRRRGSRLIVRADADYYTVLGVSKNSTKSEIKTAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKRSIYDKFGEAGLKGSPGFGGGMGDFSNPFDLFESLFEGMDGRSRQSWNGAMNGEDEYYSLVLNFKEAVFGVEKEIEIRRLEKCGTCDGSGAKPGTKSSRCNTCGGQGRVVTQTRTPLGIFQQSMTCSSCNGTGETRTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNSGKKGGSPGDLFVVLEVIPDPVLKREDTNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPSGTQPGSTLVMAKKGVPLLNKKNMRGDQFVRVQVEIPKKLSSDERKLIEELSELSKGKTAAGMR