Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40942.t1 | XP_003602691.1 | 88.3 | 735 | 72 | 2 | 1 | 730 | 1 | 726 | 1.10E-262 | 916 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40942.t1 | Q8LLE5 | 55.9 | 295 | 129 | 1 | 82 | 376 | 1 | 294 | 1.8e-75 | 285.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40942.t1 | G7J2M7 | 88.3 | 735 | 72 | 2 | 1 | 730 | 1 | 726 | 8.0e-263 | 916.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049233 | MS.gene40942 | 0.856734 | 2.63E-62 | -1.69E-46 |
| MS.gene050442 | MS.gene40942 | 0.817712 | 2.86E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene40942 | 0.806917 | 6.52E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene40942 | 0.819147 | 1.35E-52 | -1.69E-46 |
| MS.gene051265 | MS.gene40942 | 0.826296 | 2.93E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene40942 | 0.80024 | 1.58E-48 | -1.69E-46 |
| MS.gene052020 | MS.gene40942 | 0.807569 | 4.74E-50 | -1.69E-46 |
| MS.gene053565 | MS.gene40942 | 0.800454 | 1.43E-48 | -1.69E-46 |
| MS.gene053584 | MS.gene40942 | 0.813691 | 2.25E-51 | -1.69E-46 |
| MS.gene05417 | MS.gene40942 | 0.814515 | 1.48E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene40942 | 0.808512 | 2.99E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene40942 | 0.818139 | 2.29E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene40942 | 0.816625 | 5.02E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene40942 | 0.819916 | 9.03E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene40942 | 0.804344 | 2.26E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene40942 | 0.80371 | 3.06E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene40942 | 0.832449 | 9.40E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene40942 | 0.812083 | 5.07E-51 | -1.69E-46 |
| MS.gene058736 | MS.gene40942 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene059128 | MS.gene40942 | 0.845962 | 2.93E-59 | -1.69E-46 |
| MS.gene060137 | MS.gene40942 | -0.822343 | 2.49E-53 | -1.69E-46 |
| MS.gene060918 | MS.gene40942 | 0.818578 | 1.82E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40942 | MS.gene84485 | PPI |
| MS.gene40942 | MS.gene00895 | PPI |
| MS.gene01146 | MS.gene40942 | PPI |
| MS.gene01838 | MS.gene40942 | PPI |
| MS.gene40942 | MS.gene01143 | PPI |
| MS.gene071949 | MS.gene40942 | PPI |
| MS.gene00893 | MS.gene40942 | PPI |
| MS.gene047901 | MS.gene40942 | PPI |
| MS.gene40942 | MS.gene026637 | PPI |
| MS.gene33602 | MS.gene40942 | PPI |
| MS.gene63019 | MS.gene40942 | PPI |
| MS.gene01826 | MS.gene40942 | PPI |
| MS.gene002176 | MS.gene40942 | PPI |
| MS.gene40942 | MS.gene047900 | PPI |
| MS.gene40942 | MS.gene002864 | PPI |
| MS.gene002867 | MS.gene40942 | PPI |
| MS.gene40942 | MS.gene00896 | PPI |
| MS.gene40942 | MS.gene75229 | PPI |
| MS.gene047904 | MS.gene40942 | PPI |
| MS.gene40942 | MS.gene047083 | PPI |
| MS.gene40942 | MS.gene93193 | PPI |
| MS.gene071947 | MS.gene40942 | PPI |
| MS.gene002174 | MS.gene40942 | PPI |
| MS.gene40942 | MS.gene002865 | PPI |
| MS.gene026126 | MS.gene40942 | PPI |
| MS.gene40942 | MS.gene01827 | PPI |
| MS.gene40942 | MS.gene99533 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40942.t1 | MTR_3g096990 | 89.388 | 735 | 64 | 2 | 1 | 730 | 1 | 726 | 0.0 | 1286 |
| MS.gene40942.t1 | MTR_3g096990 | 89.066 | 503 | 46 | 1 | 1 | 503 | 1 | 494 | 0.0 | 871 |
| MS.gene40942.t1 | MTR_3g096990 | 81.467 | 259 | 40 | 2 | 477 | 730 | 377 | 632 | 1.21e-133 | 409 |
| MS.gene40942.t1 | MTR_8g094760 | 61.996 | 521 | 154 | 6 | 1 | 501 | 1 | 497 | 0.0 | 553 |
| MS.gene40942.t1 | MTR_8g094760 | 55.253 | 257 | 108 | 4 | 474 | 727 | 379 | 631 | 4.54e-70 | 241 |
| MS.gene40942.t1 | MTR_8g094760 | 62.526 | 483 | 139 | 4 | 39 | 501 | 25 | 485 | 0.0 | 531 |
| MS.gene40942.t1 | MTR_8g094760 | 55.253 | 257 | 108 | 4 | 474 | 727 | 367 | 619 | 3.63e-70 | 241 |
| MS.gene40942.t1 | MTR_1g030010 | 41.193 | 704 | 344 | 17 | 48 | 725 | 126 | 785 | 6.39e-123 | 387 |
| MS.gene40942.t1 | MTR_3g113290 | 42.035 | 226 | 108 | 3 | 64 | 266 | 93 | 318 | 8.16e-37 | 149 |
| MS.gene40942.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 7.28e-34 | 139 |
| MS.gene40942.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 7.69e-34 | 139 |
| MS.gene40942.t1 | MTR_5g021810 | 33.223 | 301 | 168 | 5 | 1 | 268 | 1 | 301 | 4.57e-30 | 127 |
| MS.gene40942.t1 | MTR_5g021810 | 32.781 | 302 | 169 | 5 | 1 | 268 | 1 | 302 | 1.59e-29 | 125 |
| MS.gene40942.t1 | MTR_4g094848 | 33.916 | 286 | 130 | 6 | 1 | 258 | 1 | 255 | 3.76e-29 | 125 |
| MS.gene40942.t1 | MTR_5g016830 | 28.467 | 411 | 215 | 13 | 1 | 389 | 1 | 354 | 2.07e-23 | 106 |
| MS.gene40942.t1 | MTR_4g085570 | 28.214 | 280 | 150 | 9 | 1 | 266 | 1 | 243 | 1.65e-11 | 68.2 |
| MS.gene40942.t1 | MTR_4g085570 | 28.214 | 280 | 150 | 9 | 1 | 266 | 1 | 243 | 2.52e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40942.t1 | AT3G05270 | 41.860 | 688 | 313 | 15 | 1 | 674 | 1 | 615 | 2.79e-130 | 400 |
| MS.gene40942.t1 | AT3G05270 | 41.860 | 688 | 313 | 15 | 1 | 674 | 1 | 615 | 2.79e-130 | 400 |
| MS.gene40942.t1 | AT3G05270 | 41.860 | 688 | 313 | 15 | 1 | 674 | 1 | 615 | 2.79e-130 | 400 |
| MS.gene40942.t1 | AT1G21810 | 36.276 | 623 | 273 | 20 | 79 | 674 | 13 | 538 | 2.22e-73 | 250 |
| MS.gene40942.t1 | AT1G21810 | 36.276 | 623 | 273 | 20 | 79 | 674 | 13 | 538 | 2.22e-73 | 250 |
| MS.gene40942.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 4.38e-70 | 241 |
| MS.gene40942.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 7.02e-69 | 241 |
| MS.gene40942.t1 | AT1G77580 | 34.007 | 297 | 160 | 12 | 381 | 674 | 394 | 657 | 4.31e-12 | 70.1 |
| MS.gene40942.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 9.21e-69 | 241 |
| MS.gene40942.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 3.86e-12 | 70.5 |
| MS.gene40942.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 9.21e-69 | 241 |
| MS.gene40942.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 3.86e-12 | 70.5 |
| MS.gene40942.t1 | AT1G21810 | 34.008 | 494 | 215 | 21 | 211 | 674 | 3 | 415 | 1.68e-39 | 153 |
| MS.gene40942.t1 | AT1G19835 | 34.675 | 323 | 180 | 5 | 1 | 296 | 1 | 319 | 2.00e-37 | 150 |
| MS.gene40942.t1 | AT1G19835 | 34.675 | 323 | 180 | 5 | 1 | 296 | 1 | 319 | 2.00e-37 | 150 |
| MS.gene40942.t1 | AT1G19835 | 34.675 | 323 | 180 | 5 | 1 | 296 | 1 | 319 | 2.00e-37 | 150 |
| MS.gene40942.t1 | AT1G19835 | 34.675 | 323 | 180 | 5 | 1 | 296 | 1 | 319 | 2.00e-37 | 150 |
| MS.gene40942.t1 | AT1G19835 | 34.675 | 323 | 180 | 5 | 1 | 296 | 1 | 319 | 2.00e-37 | 150 |
| MS.gene40942.t1 | AT1G19835 | 34.675 | 323 | 180 | 5 | 1 | 296 | 1 | 319 | 2.00e-37 | 150 |
| MS.gene40942.t1 | AT4G36120 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 7.05e-31 | 130 |
| MS.gene40942.t1 | AT4G36120 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 7.05e-31 | 130 |
| MS.gene40942.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.23e-28 | 122 |
| MS.gene40942.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.23e-28 | 122 |
| MS.gene40942.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.29e-28 | 122 |
| MS.gene40942.t1 | AT2G23360 | 33.333 | 237 | 135 | 4 | 53 | 266 | 16 | 252 | 3.43e-17 | 86.7 |
Find 134 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAACAACTCTTGTAAT+TGG | 0.137119 | 3.2:-80942161 | MS.gene40942:CDS |
| CCACTCAAGCTCGTCTCTTT+TGG | 0.200759 | 3.2:+80942134 | None:intergenic |
| GGCTTTGTCTGCTGATAATT+TGG | 0.210676 | 3.2:-80940861 | MS.gene40942:CDS |
| CTGCTTTACCAAATCTTCTT+TGG | 0.249118 | 3.2:+80942625 | None:intergenic |
| AAGAGAAAGCAAGCAATATT+TGG | 0.255370 | 3.2:-80941920 | MS.gene40942:CDS |
| GTAATACCTCGAGCTGCTTT+TGG | 0.280342 | 3.2:+80941377 | None:intergenic |
| TGCTTTCTCTTTCTGCAGCT+TGG | 0.289852 | 3.2:+80941932 | None:intergenic |
| GCTTTCTCTTTCTGCAGCTT+GGG | 0.293528 | 3.2:+80941933 | None:intergenic |
| TCACCGCCATCTTGGGGAGC+TGG | 0.312775 | 3.2:+80940310 | None:intergenic |
| CTAAATCCATCTATTAGCTT+TGG | 0.314378 | 3.2:-80940244 | MS.gene40942:CDS |
| GTCTGCTTCAATTACAGAAT+TGG | 0.315854 | 3.2:-80941659 | MS.gene40942:CDS |
| GATCAAGTTAGTCATCTTAA+TGG | 0.317493 | 3.2:-80942255 | MS.gene40942:CDS |
| TGATCTTCTGCAGAGGCTTC+AGG | 0.318270 | 3.2:-80942046 | MS.gene40942:CDS |
| CAACTGCTCACCGCCATCTT+GGG | 0.319126 | 3.2:+80940303 | None:intergenic |
| GCAGTATTTCAGTGTCTTGA+TGG | 0.319413 | 3.2:+80940783 | None:intergenic |
| CACCGCCATCTTGGGGAGCT+GGG | 0.323771 | 3.2:+80940311 | None:intergenic |
| ATCAAGTTAGTCATCTTAAT+GGG | 0.324475 | 3.2:-80942254 | MS.gene40942:CDS |
| CATTAGTGCCAAAGAAGATT+TGG | 0.331279 | 3.2:-80942633 | MS.gene40942:CDS |
| GGAGAAGAAGCTAGCGAAAA+TGG | 0.341125 | 3.2:-80941440 | MS.gene40942:CDS |
| GGTTGGTCTGATGCAGTATC+TGG | 0.344154 | 3.2:+80941532 | None:intergenic |
| TGTTCTGCTCAAGACCTTGT+AGG | 0.358228 | 3.2:+80940190 | None:intergenic |
| ACTGATGTGCATACTCTAAC+TGG | 0.369885 | 3.2:-80942680 | MS.gene40942:CDS |
| GCAGCCACGGAAATGACTTC+TGG | 0.375082 | 3.2:+80942722 | None:intergenic |
| TCAACTGCTCACCGCCATCT+TGG | 0.379423 | 3.2:+80940302 | None:intergenic |
| GACAGCTTCTTCAGCAACTT+TGG | 0.380920 | 3.2:+80942598 | None:intergenic |
| ACAGATAGCATGTCAGATAA+TGG | 0.389217 | 3.2:-80941772 | MS.gene40942:CDS |
| GATGGATGATTTCCTCGAAA+TGG | 0.408615 | 3.2:-80941572 | MS.gene40942:CDS |
| TTCCCTGGCCAACATTTGGT+TGG | 0.409152 | 3.2:+80941515 | None:intergenic |
| CAGCAAGCCTTTCCATTTCG+AGG | 0.412193 | 3.2:+80941560 | None:intergenic |
| GAAAGTGATATGCGTAAATT+CGG | 0.418055 | 3.2:-80941730 | MS.gene40942:CDS |
| TGCAAACAACTCTTGTAATT+GGG | 0.422194 | 3.2:-80942160 | MS.gene40942:CDS |
| TGTGAATGACTCTGCATAAA+CGG | 0.424603 | 3.2:+80941792 | None:intergenic |
| TCTGTTCCCTGGCCAACATT+TGG | 0.426822 | 3.2:+80941511 | None:intergenic |
| TCATCTTAATGGGGAACTAA+AGG | 0.428665 | 3.2:-80942244 | MS.gene40942:CDS |
| GGCCATGAGTCATAATGCTT+TGG | 0.432790 | 3.2:+80941682 | None:intergenic |
| ACTTGATTCAGAGGACACTA+TGG | 0.441112 | 3.2:-80940356 | MS.gene40942:CDS |
| TAAAATTCAAAACCATTGAA+TGG | 0.442991 | 3.2:-80941966 | MS.gene40942:CDS |
| CTGCATAGGGAAGGTATTGA+TGG | 0.443757 | 3.2:-80940764 | MS.gene40942:CDS |
| TTTGGCCAAGTGTGAAAAGT+TGG | 0.448967 | 3.2:-80940843 | MS.gene40942:CDS |
| AAAATTCAAAACCATTGAAT+GGG | 0.454203 | 3.2:-80941965 | MS.gene40942:CDS |
| GGTGCTCAAATCCCATTCAA+TGG | 0.455832 | 3.2:+80941954 | None:intergenic |
| TCTGCAGAGGCTTCAGGATG+TGG | 0.457307 | 3.2:-80942040 | MS.gene40942:CDS |
| GTTGAAGTCCCTTGCAACAT+TGG | 0.462272 | 3.2:-80940389 | MS.gene40942:CDS |
| AAGATTATCTGCTCATGATC+AGG | 0.469911 | 3.2:-80943583 | MS.gene40942:intron |
| AGACCAACCAAATGTTGGCC+AGG | 0.478188 | 3.2:-80941518 | MS.gene40942:CDS |
| AGAAGAACTGTGAGTTTCAC+TGG | 0.479117 | 3.2:+80943629 | None:intergenic |
| AGATAATGGAGAGAGGCTAT+TGG | 0.482617 | 3.2:-80941758 | MS.gene40942:CDS |
| AGTTGTTTGCAACAGCTTCA+AGG | 0.483000 | 3.2:+80942172 | None:intergenic |
| CCGGGTAAAGGAAGCAGAGT+TGG | 0.490552 | 3.2:-80941350 | MS.gene40942:CDS |
| ACCACTGCACAAAACCGTAT+TGG | 0.496783 | 3.2:-80941616 | MS.gene40942:CDS |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.501906 | 3.2:-80942593 | MS.gene40942:intron |
| CATACACTGTGTCTGTTCCC+TGG | 0.502835 | 3.2:+80941500 | None:intergenic |
| GGTATCACAAAGTCGGGTAA+AGG | 0.503164 | 3.2:-80941080 | MS.gene40942:CDS |
| AGCTCGAGGTATTACAAGGC+CGG | 0.505834 | 3.2:-80941369 | MS.gene40942:CDS |
| GCTCAAGGTATCACAAAGTC+GGG | 0.506661 | 3.2:-80941086 | MS.gene40942:CDS |
| TCGGGTAAAGGAAGCGGAGT+TGG | 0.507512 | 3.2:-80941068 | MS.gene40942:CDS |
| TATAGATGGAACGAAGGAGT+TGG | 0.511290 | 3.2:-80943683 | None:intergenic |
| AACTGCTCACCGCCATCTTG+GGG | 0.513505 | 3.2:+80940304 | None:intergenic |
| CCAAAAGAGACGAGCTTGAG+TGG | 0.515425 | 3.2:-80942134 | MS.gene40942:CDS |
| TTCAACTCAGATCGATCTGA+TGG | 0.516137 | 3.2:-80941590 | MS.gene40942:CDS |
| TTGGTAGGTTCTATCCTACA+AGG | 0.519182 | 3.2:-80940204 | MS.gene40942:CDS |
| ATATGCGTAAATTCGGAGGC+AGG | 0.521010 | 3.2:-80941723 | MS.gene40942:CDS |
| GGTATTACAAGGCCGGGTAA+AGG | 0.522637 | 3.2:-80941362 | MS.gene40942:CDS |
| GAGCCACGACATTCAATCTC+TGG | 0.528546 | 3.2:+80941860 | None:intergenic |
| AGGAAGAGATTGACAAAGAG+CGG | 0.530251 | 3.2:-80941165 | MS.gene40942:CDS |
| AGACACTGAAATACTGCATA+GGG | 0.534338 | 3.2:-80940777 | MS.gene40942:CDS |
| CATTCTCTGTCAACGATCGC+AGG | 0.538257 | 3.2:-80941831 | MS.gene40942:CDS |
| TCTGAGTTGAAAGGCCAATA+CGG | 0.539705 | 3.2:+80941602 | None:intergenic |
| GGTAAAGGAAGCGGAGTTGG+AGG | 0.539727 | 3.2:-80941065 | MS.gene40942:CDS |
| AGGAAGAGATTGAGAAAGAG+CGG | 0.539922 | 3.2:-80940883 | MS.gene40942:CDS |
| CGGAAAACCATCGAATCTCT+AGG | 0.540417 | 3.2:-80940418 | MS.gene40942:CDS |
| ACCGCCATCTTGGGGAGCTG+GGG | 0.541230 | 3.2:+80940312 | None:intergenic |
| CTCTTCATTTGACGCAGCCA+CGG | 0.542038 | 3.2:+80942709 | None:intergenic |
| AGCTCAAGGTATCACAAAGT+CGG | 0.543179 | 3.2:-80941087 | MS.gene40942:CDS |
| GGTTCAAAAGAATGATGCAT+TGG | 0.543300 | 3.2:-80941461 | MS.gene40942:CDS |
| GGGAACTAAAGGATTGTATG+AGG | 0.545681 | 3.2:-80942233 | MS.gene40942:CDS |
| GTGGAAAGTTACTGAGCTTG+AGG | 0.546401 | 3.2:-80942115 | MS.gene40942:CDS |
| ATTATATTTAGGCTGGGAGA+AGG | 0.546698 | 3.2:-80942346 | MS.gene40942:intron |
| GCAGGAGAAGGAAGTAGCAT+TGG | 0.546961 | 3.2:-80940464 | MS.gene40942:intron |
| CTGCTGTCCTAGAGATTCGA+TGG | 0.547891 | 3.2:+80940411 | None:intergenic |
| GAGGCTTCAGGATGTGGAGA+GGG | 0.549030 | 3.2:-80942034 | MS.gene40942:CDS |
| AGACACAGTGTATGCTGAAG+TGG | 0.551827 | 3.2:-80941491 | MS.gene40942:CDS |
| AGACTTCATACTTGATTCAG+AGG | 0.557101 | 3.2:-80940365 | MS.gene40942:CDS |
| ACAAAGTCGGGTAAAGGAAG+CGG | 0.558654 | 3.2:-80941074 | MS.gene40942:CDS |
| AACCAAAGCATTATGACTCA+TGG | 0.559723 | 3.2:-80941684 | MS.gene40942:CDS |
| GGTAAAGGAAGCAGAGTTGG+AGG | 0.562324 | 3.2:-80941347 | MS.gene40942:CDS |
| GGAAGAGATTGACAAAGAGC+GGG | 0.567707 | 3.2:-80941164 | MS.gene40942:CDS |
| CGTGGCTGCGTCAAATGAAG+AGG | 0.568762 | 3.2:-80942708 | MS.gene40942:CDS |
| CCAACTCTGCTTCCTTTACC+CGG | 0.569027 | 3.2:+80941350 | None:intergenic |
| TGGCGAGTTAATGTTCAAGC+AGG | 0.569151 | 3.2:-80940744 | MS.gene40942:intron |
| GCTCGAGGTATTACAAGGCC+GGG | 0.574482 | 3.2:-80941368 | MS.gene40942:CDS |
| TGCAGATAAACTCGAGCTAG+AGG | 0.575538 | 3.2:-80941134 | MS.gene40942:CDS |
| GGAAGAGATTGAGAAAGAGC+GGG | 0.579765 | 3.2:-80940882 | MS.gene40942:CDS |
| AAGACACTGAAATACTGCAT+AGG | 0.582843 | 3.2:-80940778 | MS.gene40942:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.2:-80940939 | MS.gene40942:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.2:-80941221 | MS.gene40942:CDS |
| GGAGGCAGGGAGATAAATGA+AGG | 0.583949 | 3.2:-80941709 | MS.gene40942:CDS |
| ATGATTTCCTCGAAATGGAA+AGG | 0.588479 | 3.2:-80941567 | MS.gene40942:CDS |
| TGAAGTCTTCCAATGTTGCA+AGG | 0.589752 | 3.2:+80940380 | None:intergenic |
| ACAACCCCAGCTCCCCAAGA+TGG | 0.590488 | 3.2:-80940316 | MS.gene40942:CDS |
| AAGCAGCTCGAGGTATTACA+AGG | 0.592236 | 3.2:-80941373 | MS.gene40942:CDS |
| TGGAACGAAGGAGTTGGATG+TGG | 0.592305 | 3.2:-80943677 | MS.gene40942:CDS |
| ACGGAAATGACTTCTGGAGA+TGG | 0.595138 | 3.2:+80942728 | None:intergenic |
| TCAGATCGATCTGAGTTGAA+AGG | 0.597854 | 3.2:+80941593 | None:intergenic |
| GCATCAGACCAACCAAATGT+TGG | 0.607554 | 3.2:-80941523 | MS.gene40942:CDS |
| TAATGGAGAGAGGCTATTGG+TGG | 0.608912 | 3.2:-80941755 | MS.gene40942:CDS |
| ATCTCCAGAAGTCATTTCCG+TGG | 0.609448 | 3.2:-80942726 | MS.gene40942:CDS |
| AGAACCTACCAAAACTGAAG+TGG | 0.609934 | 3.2:+80940215 | None:intergenic |
| GACCAACCAAATGTTGGCCA+GGG | 0.612070 | 3.2:-80941517 | MS.gene40942:CDS |
| GAAGTCTTCCAATGTTGCAA+GGG | 0.615238 | 3.2:+80940381 | None:intergenic |
| AGAGGCTTCAGGATGTGGAG+AGG | 0.619121 | 3.2:-80942035 | MS.gene40942:CDS |
| TATTATTATAGATGGAACGA+AGG | 0.620108 | 3.2:-80943689 | None:intergenic |
| GGCACTAATGTCTAAGAGAG+CGG | 0.621884 | 3.2:+80942646 | None:intergenic |
| TGGAGATGGAACAGTTTGAG+TGG | 0.623998 | 3.2:+80942742 | None:intergenic |
| AGATAAAATTGAGCTAGAGA+TGG | 0.626676 | 3.2:-80941413 | MS.gene40942:CDS |
| GTATGCTGAAGTGGAAGCAT+TGG | 0.628182 | 3.2:-80941482 | MS.gene40942:CDS |
| ACCCCAGCTCCCCAAGATGG+CGG | 0.628407 | 3.2:-80940313 | MS.gene40942:CDS |
| GAGAGCTGCTCAAACTGAGG+CGG | 0.637369 | 3.2:-80941218 | MS.gene40942:CDS |
| TTAACTCTGATCTTCTGCAG+AGG | 0.638024 | 3.2:-80942053 | MS.gene40942:CDS |
| TTTGGAGAGTATAACGAAGG+TGG | 0.647288 | 3.2:-80941902 | MS.gene40942:CDS |
| TATGCGTAAATTCGGAGGCA+GGG | 0.647344 | 3.2:-80941722 | MS.gene40942:CDS |
| AATTCTGTAATTGAAGCAGA+CGG | 0.653774 | 3.2:+80941661 | None:intergenic |
| TGCTGCAAAACAGCAAAATG+CGG | 0.660097 | 3.2:-80942286 | MS.gene40942:CDS |
| AGATAAACTCGAGCTAGAGG+TGG | 0.661721 | 3.2:-80941131 | MS.gene40942:CDS |
| TGAACTACAATCTCGACTCG+AGG | 0.662262 | 3.2:-80941992 | MS.gene40942:CDS |
| TCAAGTTAGTCATCTTAATG+GGG | 0.667984 | 3.2:-80942253 | MS.gene40942:CDS |
| AGTGATATGCGTAAATTCGG+AGG | 0.673306 | 3.2:-80941727 | MS.gene40942:CDS |
| ACTGAAATACTGCATAGGGA+AGG | 0.673392 | 3.2:-80940773 | MS.gene40942:CDS |
| GCATGTCAGATAATGGAGAG+AGG | 0.673908 | 3.2:-80941765 | MS.gene40942:CDS |
| CGAGTGCCAAAAGCAGCTCG+AGG | 0.681288 | 3.2:-80941383 | MS.gene40942:CDS |
| GTGCCAGAGATTGAATGTCG+TGG | 0.689035 | 3.2:-80941863 | MS.gene40942:CDS |
| ACTAATGTCTAAGAGAGCGG+CGG | 0.698941 | 3.2:+80942649 | None:intergenic |
| GAAGAAGCTAGCGAAAATGG+AGG | 0.702295 | 3.2:-80941437 | MS.gene40942:CDS |
| ATATTTGGAGAGTATAACGA+AGG | 0.713817 | 3.2:-80941905 | MS.gene40942:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAATTGAATATTATTTA+AGG | + | chr3.2:80940800-80940819 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATAAACCATAA+CGG | + | chr3.2:80941439-80941458 | None:intergenic | 10.0% |
| !!! | CATTGTTTTATTTTATTCTA+CGG | - | chr3.2:80940990-80941009 | MS.gene40942:CDS | 15.0% |
| !!! | TTACATGATTTTAAGTTTAT+AGG | - | chr3.2:80940956-80940975 | MS.gene40942:CDS | 15.0% |
| !! | AAAATTCAAAACCATTGAAT+GGG | - | chr3.2:80941911-80941930 | MS.gene40942:CDS | 20.0% |
| !! | AATATTAATATAGCAGTCTT+TGG | + | chr3.2:80941508-80941527 | None:intergenic | 20.0% |
| !! | ATATTTGATTATATTTAGGC+TGG | - | chr3.2:80941523-80941542 | MS.gene40942:CDS | 20.0% |
| !! | TAAAATTCAAAACCATTGAA+TGG | - | chr3.2:80941910-80941929 | MS.gene40942:CDS | 20.0% |
| !! | TATTTGATTATATTTAGGCT+GGG | - | chr3.2:80941524-80941543 | MS.gene40942:CDS | 20.0% |
| !!! | AGTTAAAATTTTAACATGTG+AGG | - | chr3.2:80943298-80943317 | MS.gene40942:intron | 20.0% |
| !!! | ATTCAACAAGGTTTTTAATA+GGG | + | chr3.2:80940912-80940931 | None:intergenic | 20.0% |
| !!! | CAAAATTCCAAAATATTTTC+TGG | + | chr3.2:80943333-80943352 | None:intergenic | 20.0% |
| !!! | CAGAAAATATTTTGGAATTT+TGG | - | chr3.2:80943331-80943350 | MS.gene40942:intron | 20.0% |
| !!! | TCATAAACCATCTTATATTT+TGG | - | chr3.2:80943378-80943397 | MS.gene40942:intron | 20.0% |
| !!! | TTAACTTCTATTTTCAATAC+AGG | - | chr3.2:80940342-80940361 | MS.gene40942:CDS | 20.0% |
| ! | AATCAGACCAAAAAACAAAA+AGG | + | chr3.2:80941392-80941411 | None:intergenic | 25.0% |
| ! | AATGAAGGAGAAGTTTAAAA+TGG | + | chr3.2:80941323-80941342 | None:intergenic | 25.0% |
| ! | AATGACATAATTCAATGTGT+CGG | + | chr3.2:80940695-80940714 | None:intergenic | 25.0% |
| ! | AATGATGCCAAAATATAAGA+TGG | + | chr3.2:80943388-80943407 | None:intergenic | 25.0% |
| ! | ACCTAATATCATCTAAACAT+AGG | - | chr3.2:80941470-80941489 | MS.gene40942:CDS | 25.0% |
| ! | ACCTATGTTTAGATGATATT+AGG | + | chr3.2:80941474-80941493 | None:intergenic | 25.0% |
| ! | ATCAAGTTAGTCATCTTAAT+GGG | - | chr3.2:80941622-80941641 | MS.gene40942:CDS | 25.0% |
| ! | ATCTAAACATAGGTTATCAA+AGG | - | chr3.2:80941480-80941499 | MS.gene40942:CDS | 25.0% |
| ! | CTCTCATTAAAACAAAATTG+AGG | - | chr3.2:80940543-80940562 | MS.gene40942:intron | 25.0% |
| ! | TAGTAACTAGTAACCATATT+TGG | - | chr3.2:80940435-80940454 | MS.gene40942:CDS | 25.0% |
| !! | GATTCAACAAGGTTTTTAAT+AGG | + | chr3.2:80940913-80940932 | None:intergenic | 25.0% |
| !! | TTTTAAACTTCTCCTTCATT+TGG | - | chr3.2:80941323-80941342 | MS.gene40942:CDS | 25.0% |
| !!! | AGGTTGTCATTTTTGTTAAT+AGG | - | chr3.2:80940464-80940483 | MS.gene40942:intron | 25.0% |
| AAGAGAAAGCAAGCAATATT+TGG | - | chr3.2:80941956-80941975 | MS.gene40942:CDS | 30.0% | |
| AAGCAACAATTTGAACAATC+AGG | + | chr3.2:80941059-80941078 | None:intergenic | 30.0% | |
| AATAACGTAGCCAAAAAAAG+AGG | + | chr3.2:80940321-80940340 | None:intergenic | 30.0% | |
| AATTCTGTAATTGAAGCAGA+CGG | + | chr3.2:80942218-80942237 | None:intergenic | 30.0% | |
| AGATAAAATTGAGCTAGAGA+TGG | - | chr3.2:80942463-80942482 | MS.gene40942:intron | 30.0% | |
| AGCAACAATTTGAACAATCA+GGG | + | chr3.2:80941058-80941077 | None:intergenic | 30.0% | |
| CTTGTATTCTTGATTCAACA+AGG | + | chr3.2:80940924-80940943 | None:intergenic | 30.0% | |
| GAAAGTGATATGCGTAAATT+CGG | - | chr3.2:80942146-80942165 | MS.gene40942:CDS | 30.0% | |
| GATCAAGTTAGTCATCTTAA+TGG | - | chr3.2:80941621-80941640 | MS.gene40942:CDS | 30.0% | |
| TAAAATTGACAGCCAAATGA+AGG | + | chr3.2:80941338-80941357 | None:intergenic | 30.0% | |
| TCAAGTTAGTCATCTTAATG+GGG | - | chr3.2:80941623-80941642 | MS.gene40942:CDS | 30.0% | |
| TGCAAACAACTCTTGTAATT+GGG | - | chr3.2:80941716-80941735 | MS.gene40942:CDS | 30.0% | |
| TTGCAAACAACTCTTGTAAT+TGG | - | chr3.2:80941715-80941734 | MS.gene40942:CDS | 30.0% | |
| ! | AAATTGTTGCTTGTTTGAGA+CGG | - | chr3.2:80941067-80941086 | MS.gene40942:CDS | 30.0% |
| ! | AAGGTTTTTAATAGGGACTT+GGG | + | chr3.2:80940905-80940924 | None:intergenic | 30.0% |
| ! | ATATTTGGAGAGTATAACGA+AGG | - | chr3.2:80941971-80941990 | MS.gene40942:CDS | 30.0% |
| ! | CCAGATTCCAGAAAATATTT+TGG | - | chr3.2:80943323-80943342 | MS.gene40942:intron | 30.0% |
| ! | CTAAATCCATCTATTAGCTT+TGG | - | chr3.2:80943632-80943651 | MS.gene40942:CDS | 30.0% |
| ! | CTTCTATTTTCAATACAGGA+AGG | - | chr3.2:80940346-80940365 | MS.gene40942:CDS | 30.0% |
| ! | CTTTTTCCAAAGCTAATAGA+TGG | + | chr3.2:80943641-80943660 | None:intergenic | 30.0% |
| ! | TATTTTCAATACAGGAAGGA+GGG | - | chr3.2:80940350-80940369 | MS.gene40942:CDS | 30.0% |
| !!! | AGCATTCTCATTTTTTGCTT+GGG | + | chr3.2:80942909-80942928 | None:intergenic | 30.0% |
| !!! | AGCTTTCTCATTTTTTTCTC+GGG | + | chr3.2:80942627-80942646 | None:intergenic | 30.0% |
| !!! | CAGCTTTCTCATTTTTTTCT+CGG | + | chr3.2:80942628-80942647 | None:intergenic | 30.0% |
| !!! | CCAAAATATTTTCTGGAATC+TGG | + | chr3.2:80943326-80943345 | None:intergenic | 30.0% |
| !!! | GTATCGACCTTTTTGTTTTT+TGG | - | chr3.2:80941382-80941401 | MS.gene40942:CDS | 30.0% |
| AAGAAGAAGAAGAGAGATTG+AGG | - | chr3.2:80940493-80940512 | MS.gene40942:intron | 35.0% | |
| AAGACACTGAAATACTGCAT+AGG | - | chr3.2:80943098-80943117 | MS.gene40942:intron | 35.0% | |
| AAGATTATCTGCTCATGATC+AGG | - | chr3.2:80940293-80940312 | MS.gene40942:CDS | 35.0% | |
| AATGTTCAAGCAGGTAAGTT+TGG | - | chr3.2:80943141-80943160 | MS.gene40942:intron | 35.0% | |
| ACAACCTTCACTTCCAAATA+TGG | + | chr3.2:80940451-80940470 | None:intergenic | 35.0% | |
| ACAGATAGCATGTCAGATAA+TGG | - | chr3.2:80942104-80942123 | MS.gene40942:CDS | 35.0% | |
| AGAAGAAGAAGAGAGATTGA+GGG | - | chr3.2:80940494-80940513 | MS.gene40942:intron | 35.0% | |
| AGACACTGAAATACTGCATA+GGG | - | chr3.2:80943099-80943118 | MS.gene40942:intron | 35.0% | |
| AGACTTCATACTTGATTCAG+AGG | - | chr3.2:80943511-80943530 | MS.gene40942:intron | 35.0% | |
| AGGGATCTCAAACTTAAAAG+CGG | + | chr3.2:80941039-80941058 | None:intergenic | 35.0% | |
| ATGATTTCCTCGAAATGGAA+AGG | - | chr3.2:80942309-80942328 | MS.gene40942:CDS | 35.0% | |
| ATTATATTTAGGCTGGGAGA+AGG | - | chr3.2:80941530-80941549 | MS.gene40942:CDS | 35.0% | |
| CATTAGTGCCAAAGAAGATT+TGG | - | chr3.2:80941243-80941262 | MS.gene40942:CDS | 35.0% | |
| CTGCTTTACCAAATCTTCTT+TGG | + | chr3.2:80941254-80941273 | None:intergenic | 35.0% | |
| GATCTCAAAAATCTGTTCAC+TGG | - | chr3.2:80942688-80942707 | MS.gene40942:CDS | 35.0% | |
| GGTTCAAAAGAATGATGCAT+TGG | - | chr3.2:80942415-80942434 | MS.gene40942:intron | 35.0% | |
| GTAACCATATTTGGAAGTGA+AGG | - | chr3.2:80940444-80940463 | MS.gene40942:CDS | 35.0% | |
| GTCTGCTTCAATTACAGAAT+TGG | - | chr3.2:80942217-80942236 | MS.gene40942:CDS | 35.0% | |
| TCATCTTAATGGGGAACTAA+AGG | - | chr3.2:80941632-80941651 | MS.gene40942:CDS | 35.0% | |
| TGTGAATGACTCTGCATAAA+CGG | + | chr3.2:80942087-80942106 | None:intergenic | 35.0% | |
| ! | AACAATCTCACTCTTTTTGG+AGG | - | chr3.2:80943228-80943247 | MS.gene40942:intron | 35.0% |
| ! | AACCAAAGCATTATGACTCA+TGG | - | chr3.2:80942192-80942211 | MS.gene40942:CDS | 35.0% |
| ! | ACGCCTTCAATCAAAAGTAT+TGG | + | chr3.2:80940637-80940656 | None:intergenic | 35.0% |
| ! | ATTTTCAATACAGGAAGGAG+GGG | - | chr3.2:80940351-80940370 | MS.gene40942:CDS | 35.0% |
| ! | CAAGGTTTTTAATAGGGACT+TGG | + | chr3.2:80940906-80940925 | None:intergenic | 35.0% |
| ! | CTATTTTCAATACAGGAAGG+AGG | - | chr3.2:80940349-80940368 | MS.gene40942:CDS | 35.0% |
| ! | GAGGGAAAGCTAAAATGTTT+TGG | - | chr3.2:80940512-80940531 | MS.gene40942:intron | 35.0% |
| ! | GCTAACAATCTCACTCTTTT+TGG | - | chr3.2:80943225-80943244 | MS.gene40942:intron | 35.0% |
| ! | TTCTTCCAACTTTTCACACT+TGG | + | chr3.2:80943041-80943060 | None:intergenic | 35.0% |
| !! | ATTTTGGCATCATTTGATGC+AGG | - | chr3.2:80943394-80943413 | MS.gene40942:intron | 35.0% |
| !! | GCACCAATACTTTTGATTGA+AGG | - | chr3.2:80940631-80940650 | MS.gene40942:intron | 35.0% |
| !!! | CAGCATTCTCATTTTTTGCT+TGG | + | chr3.2:80942910-80942929 | None:intergenic | 35.0% |
| !!! | TGATCAGGTACCTCTTTTTT+TGG | - | chr3.2:80940308-80940327 | MS.gene40942:CDS | 35.0% |
| AACTTAAAAGCGGACAGAAC+AGG | + | chr3.2:80941029-80941048 | None:intergenic | 40.0% | |
| ACTAGTTACTACTACTACCC+TGG | + | chr3.2:80940426-80940445 | None:intergenic | 40.0% | |
| ACTGAAATACTGCATAGGGA+AGG | - | chr3.2:80943103-80943122 | MS.gene40942:intron | 40.0% | |
| ACTGATGTGCATACTCTAAC+TGG | - | chr3.2:80941196-80941215 | MS.gene40942:CDS | 40.0% | |
| ACTTGATTCAGAGGACACTA+TGG | - | chr3.2:80943520-80943539 | MS.gene40942:intron | 40.0% | |
| AGAACCTACCAAAACTGAAG+TGG | + | chr3.2:80943664-80943683 | None:intergenic | 40.0% | |
| AGAAGAACTGTGAGTTTCAC+TGG | + | chr3.2:80940250-80940269 | None:intergenic | 40.0% | |
| AGCTAGCTGTTCTTTGTGTT+TGG | - | chr3.2:80940386-80940405 | MS.gene40942:CDS | 40.0% | |
| AGGAAGAGATTGACAAAGAG+CGG | - | chr3.2:80942711-80942730 | MS.gene40942:CDS | 40.0% | |
| AGGAAGAGATTGAGAAAGAG+CGG | - | chr3.2:80942993-80943012 | MS.gene40942:intron | 40.0% | |
| AGTGATATGCGTAAATTCGG+AGG | - | chr3.2:80942149-80942168 | MS.gene40942:CDS | 40.0% | |
| AGTTGTTTGCAACAGCTTCA+AGG | + | chr3.2:80941707-80941726 | None:intergenic | 40.0% | |
| ATAGGGACTTGGGTATTATG+AGG | + | chr3.2:80940895-80940914 | None:intergenic | 40.0% | |
| CAAGCTATGAAGCACAAACA+CGG | + | chr3.2:80940757-80940776 | None:intergenic | 40.0% | |
| CTAGCTGTTCTTTGTGTTTG+GGG | - | chr3.2:80940388-80940407 | MS.gene40942:CDS | 40.0% | |
| CTAGTTACTACTACTACCCT+GGG | + | chr3.2:80940425-80940444 | None:intergenic | 40.0% | |
| CTCAAAAATCTGTTCACTGG+AGG | - | chr3.2:80942691-80942710 | MS.gene40942:CDS | 40.0% | |
| GAAGTCTTCCAATGTTGCAA+GGG | + | chr3.2:80943498-80943517 | None:intergenic | 40.0% | |
| GATGGATGATTTCCTCGAAA+TGG | - | chr3.2:80942304-80942323 | MS.gene40942:CDS | 40.0% | |
| GCAGTATTTCAGTGTCTTGA+TGG | + | chr3.2:80943096-80943115 | None:intergenic | 40.0% | |
| GCTAGCTGTTCTTTGTGTTT+GGG | - | chr3.2:80940387-80940406 | MS.gene40942:CDS | 40.0% | |
| GGGAACTAAAGGATTGTATG+AGG | - | chr3.2:80941643-80941662 | MS.gene40942:CDS | 40.0% | |
| TGAAGTCTTCCAATGTTGCA+AGG | + | chr3.2:80943499-80943518 | None:intergenic | 40.0% | |
| TGCTGCAAAACAGCAAAATG+CGG | - | chr3.2:80941590-80941609 | MS.gene40942:CDS | 40.0% | |
| TTAACTCTGATCTTCTGCAG+AGG | - | chr3.2:80941823-80941842 | MS.gene40942:CDS | 40.0% | |
| TTCAACTCAGATCGATCTGA+TGG | - | chr3.2:80942286-80942305 | MS.gene40942:CDS | 40.0% | |
| TTGGTAGGTTCTATCCTACA+AGG | - | chr3.2:80943672-80943691 | MS.gene40942:CDS | 40.0% | |
| TTTGGCCAAGTGTGAAAAGT+TGG | - | chr3.2:80943033-80943052 | MS.gene40942:intron | 40.0% | |
| ! | AGCTCAAGGTATCACAAAGT+CGG | - | chr3.2:80942789-80942808 | MS.gene40942:intron | 40.0% |
| ! | ATGCCACTTAAATACTCCAC+CGG | - | chr3.2:80940830-80940849 | MS.gene40942:CDS | 40.0% |
| ! | CTAGAGATTCGATGGTTTTC+CGG | + | chr3.2:80943460-80943479 | None:intergenic | 40.0% |
| ! | CTAGTAGATTTTCTGAGTGC+CGG | - | chr3.2:80943438-80943457 | MS.gene40942:intron | 40.0% |
| ! | GGAAAAAGCCACTTCAGTTT+TGG | - | chr3.2:80943653-80943672 | MS.gene40942:CDS | 40.0% |
| ! | GGCTTTGTCTGCTGATAATT+TGG | - | chr3.2:80943015-80943034 | MS.gene40942:intron | 40.0% |
| ! | TAGTATGACTATGAGGTGTC+CGG | + | chr3.2:80940852-80940871 | None:intergenic | 40.0% |
| ! | TCAGATCGATCTGAGTTGAA+AGG | + | chr3.2:80942286-80942305 | None:intergenic | 40.0% |
| ! | TCTGAGTTGAAAGGCCAATA+CGG | + | chr3.2:80942277-80942296 | None:intergenic | 40.0% |
| ! | TTCAAGTTCTGTCTCCGTTA+TGG | - | chr3.2:80941422-80941441 | MS.gene40942:CDS | 40.0% |
| ! | TTTGGAGAGTATAACGAAGG+TGG | - | chr3.2:80941974-80941993 | MS.gene40942:CDS | 40.0% |
| !! | AAAGCCACTTCAGTTTTGGT+AGG | - | chr3.2:80943657-80943676 | MS.gene40942:CDS | 40.0% |
| !! | AGATAATGGAGAGAGGCTAT+TGG | - | chr3.2:80942118-80942137 | MS.gene40942:CDS | 40.0% |
| !! | ATCTCACTCTTTTTGGAGGA+TGG | - | chr3.2:80943232-80943251 | MS.gene40942:intron | 40.0% |
| !! | CAAAAGTATTGGTGCTACAG+AGG | + | chr3.2:80940626-80940645 | None:intergenic | 40.0% |
| !! | GTGATACCTTGAGCTGTTTT+TGG | + | chr3.2:80942784-80942803 | None:intergenic | 40.0% |
| AAAGGTCGATACCAATGCCT+CGG | + | chr3.2:80941374-80941393 | None:intergenic | 45.0% | |
| ACAAAGTCGGGTAAAGGAAG+CGG | - | chr3.2:80942802-80942821 | MS.gene40942:intron | 45.0% | |
| ACCACTGCACAAAACCGTAT+TGG | - | chr3.2:80942260-80942279 | MS.gene40942:CDS | 45.0% | |
| ACTAATGTCTAAGAGAGCGG+CGG | + | chr3.2:80941230-80941249 | None:intergenic | 45.0% | |
| AGACACAGTGTATGCTGAAG+TGG | - | chr3.2:80942385-80942404 | MS.gene40942:intron | 45.0% | |
| AGATAAACTCGAGCTAGAGG+TGG | - | chr3.2:80942745-80942764 | MS.gene40942:CDS | 45.0% | |
| ATATGCGTAAATTCGGAGGC+AGG | - | chr3.2:80942153-80942172 | MS.gene40942:CDS | 45.0% | |
| ATCAGTGTATGTGTCATGCC+TGG | - | chr3.2:80940728-80940747 | MS.gene40942:intron | 45.0% | |
| ATCTCCAGAAGTCATTTCCG+TGG | - | chr3.2:80941150-80941169 | MS.gene40942:CDS | 45.0% | |
| CGGAAAACCATCGAATCTCT+AGG | - | chr3.2:80943458-80943477 | MS.gene40942:intron | 45.0% | |
| CGTCGAGTAGTATGACTATG+AGG | + | chr3.2:80940859-80940878 | None:intergenic | 45.0% | |
| GAAGAAGCTAGCGAAAATGG+AGG | - | chr3.2:80942439-80942458 | MS.gene40942:intron | 45.0% | |
| GACAGCTTCTTCAGCAACTT+TGG | + | chr3.2:80941281-80941300 | None:intergenic | 45.0% | |
| GCATCAGACCAACCAAATGT+TGG | - | chr3.2:80942353-80942372 | MS.gene40942:intron | 45.0% | |
| GCATCATTTGATGCAGGAGA+AGG | - | chr3.2:80943400-80943419 | MS.gene40942:intron | 45.0% | |
| GCTTTCTCTTTCTGCAGCTT+GGG | + | chr3.2:80941946-80941965 | None:intergenic | 45.0% | |
| GGAAGAGATTGACAAAGAGC+GGG | - | chr3.2:80942712-80942731 | MS.gene40942:CDS | 45.0% | |
| GGAAGAGATTGAGAAAGAGC+GGG | - | chr3.2:80942994-80943013 | MS.gene40942:intron | 45.0% | |
| GGAGAAGAAGCTAGCGAAAA+TGG | - | chr3.2:80942436-80942455 | MS.gene40942:intron | 45.0% | |
| GGCACTAATGTCTAAGAGAG+CGG | + | chr3.2:80941233-80941252 | None:intergenic | 45.0% | |
| GGCCATGAGTCATAATGCTT+TGG | + | chr3.2:80942197-80942216 | None:intergenic | 45.0% | |
| GGTATCACAAAGTCGGGTAA+AGG | - | chr3.2:80942796-80942815 | MS.gene40942:intron | 45.0% | |
| GGTGCTCAAATCCCATTCAA+TGG | + | chr3.2:80941925-80941944 | None:intergenic | 45.0% | |
| GTGGAAAGTTACTGAGCTTG+AGG | - | chr3.2:80941761-80941780 | MS.gene40942:CDS | 45.0% | |
| GTTGAAGTCCCTTGCAACAT+TGG | - | chr3.2:80943487-80943506 | MS.gene40942:intron | 45.0% | |
| TAATGGAGAGAGGCTATTGG+TGG | - | chr3.2:80942121-80942140 | MS.gene40942:CDS | 45.0% | |
| TACTACTCGACGTCAGACTT+AGG | - | chr3.2:80940867-80940886 | MS.gene40942:CDS | 45.0% | |
| TATGCGTAAATTCGGAGGCA+GGG | - | chr3.2:80942154-80942173 | MS.gene40942:CDS | 45.0% | |
| TGCAGATAAACTCGAGCTAG+AGG | - | chr3.2:80942742-80942761 | MS.gene40942:CDS | 45.0% | |
| TGCTTTCTCTTTCTGCAGCT+TGG | + | chr3.2:80941947-80941966 | None:intergenic | 45.0% | |
| TGGAGATGGAACAGTTTGAG+TGG | + | chr3.2:80941137-80941156 | None:intergenic | 45.0% | |
| TGGCATATACCTGTACAGCA+CGG | + | chr3.2:80941117-80941136 | None:intergenic | 45.0% | |
| TGGCGAGTTAATGTTCAAGC+AGG | - | chr3.2:80943132-80943151 | MS.gene40942:intron | 45.0% | |
| TGGGGTTATGTGAATTCCCA+GGG | - | chr3.2:80940406-80940425 | MS.gene40942:CDS | 45.0% | |
| TTGGGGTTATGTGAATTCCC+AGG | - | chr3.2:80940405-80940424 | MS.gene40942:CDS | 45.0% | |
| TTTATCCAGTGAGAAAGCCG+AGG | - | chr3.2:80941354-80941373 | MS.gene40942:CDS | 45.0% | |
| ! | AAGCAGCTCGAGGTATTACA+AGG | - | chr3.2:80942503-80942522 | MS.gene40942:intron | 45.0% |
| ! | ACGGAAATGACTTCTGGAGA+TGG | + | chr3.2:80941151-80941170 | None:intergenic | 45.0% |
| ! | ATGTTTTCTCCGTGCTGTAC+AGG | - | chr3.2:80941105-80941124 | MS.gene40942:CDS | 45.0% |
| ! | GCTCAAGGTATCACAAAGTC+GGG | - | chr3.2:80942790-80942809 | MS.gene40942:intron | 45.0% |
| ! | GTATGCTGAAGTGGAAGCAT+TGG | - | chr3.2:80942394-80942413 | MS.gene40942:intron | 45.0% |
| ! | TGAACTACAATCTCGACTCG+AGG | - | chr3.2:80941884-80941903 | MS.gene40942:CDS | 45.0% |
| ! | TGTCCGGTGGAGTATTTAAG+TGG | + | chr3.2:80940836-80940855 | None:intergenic | 45.0% |
| !! | ATTCAATGTGTCGGTGCTGT+AGG | + | chr3.2:80940686-80940705 | None:intergenic | 45.0% |
| !! | CTGCATAGGGAAGGTATTGA+TGG | - | chr3.2:80943112-80943131 | MS.gene40942:intron | 45.0% |
| !! | GCATGTCAGATAATGGAGAG+AGG | - | chr3.2:80942111-80942130 | MS.gene40942:CDS | 45.0% |
| !! | GTAATACCTCGAGCTGCTTT+TGG | + | chr3.2:80942502-80942521 | None:intergenic | 45.0% |
| !! | ATTAATATTTGATTATATTT+AGG | - | chr3.2:80941519-80941538 | MS.gene40942:CDS | 5.0% |
| ACTGAGAGCTGCTCAAACTG+AGG | - | chr3.2:80942655-80942674 | MS.gene40942:CDS | 50.0% | |
| AGACCAACCAAATGTTGGCC+AGG | - | chr3.2:80942358-80942377 | MS.gene40942:intron | 50.0% | |
| CAGCAAGCCTTTCCATTTCG+AGG | + | chr3.2:80942319-80942338 | None:intergenic | 50.0% | |
| CATACACTGTGTCTGTTCCC+TGG | + | chr3.2:80942379-80942398 | None:intergenic | 50.0% | |
| CATTCTCTGTCAACGATCGC+AGG | - | chr3.2:80942045-80942064 | MS.gene40942:CDS | 50.0% | |
| CCAAAAGAGACGAGCTTGAG+TGG | - | chr3.2:80941742-80941761 | MS.gene40942:CDS | 50.0% | |
| CCAACTCTGCTTCCTTTACC+CGG | + | chr3.2:80942529-80942548 | None:intergenic | 50.0% | |
| CGAGTGCCAAAAACAGCTCA+AGG | - | chr3.2:80942775-80942794 | MS.gene40942:intron | 50.0% | |
| CTCTTCATTTGACGCAGCCA+CGG | + | chr3.2:80941170-80941189 | None:intergenic | 50.0% | |
| CTGCTGTCCTAGAGATTCGA+TGG | + | chr3.2:80943468-80943487 | None:intergenic | 50.0% | |
| GAACAGCTAGCTACCTACCT+AGG | + | chr3.2:80940378-80940397 | None:intergenic | 50.0% | |
| GACCAACCAAATGTTGGCCA+GGG | - | chr3.2:80942359-80942378 | MS.gene40942:intron | 50.0% | |
| GAGCCACGACATTCAATCTC+TGG | + | chr3.2:80942019-80942038 | None:intergenic | 50.0% | |
| GCAGGAGAAGGAAGTAGCAT+TGG | - | chr3.2:80943412-80943431 | MS.gene40942:intron | 50.0% | |
| GCTATGAAGCACAAACACGG+AGG | + | chr3.2:80940754-80940773 | None:intergenic | 50.0% | |
| GGAGGCAGGGAGATAAATGA+AGG | - | chr3.2:80942167-80942186 | MS.gene40942:CDS | 50.0% | |
| GGTAAAGGAAGCAGAGTTGG+AGG | - | chr3.2:80942529-80942548 | MS.gene40942:intron | 50.0% | |
| GGTATTACAAGGCCGGGTAA+AGG | - | chr3.2:80942514-80942533 | MS.gene40942:intron | 50.0% | |
| GTGCCAGAGATTGAATGTCG+TGG | - | chr3.2:80942013-80942032 | MS.gene40942:CDS | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | - | chr3.2:80941283-80941302 | MS.gene40942:CDS | 50.0% | |
| TCTGTTCCCTGGCCAACATT+TGG | + | chr3.2:80942368-80942387 | None:intergenic | 50.0% | |
| TGATCTTCTGCAGAGGCTTC+AGG | - | chr3.2:80941830-80941849 | MS.gene40942:CDS | 50.0% | |
| TGGAACGAAGGAGTTGGATG+TGG | - | chr3.2:80940199-80940218 | MS.gene40942:CDS | 50.0% | |
| TTCCCTGGCCAACATTTGGT+TGG | + | chr3.2:80942364-80942383 | None:intergenic | 50.0% | |
| ! | AGCTCGAGGTATTACAAGGC+CGG | - | chr3.2:80942507-80942526 | MS.gene40942:intron | 50.0% |
| ! | CCACTCAAGCTCGTCTCTTT+TGG | + | chr3.2:80941745-80941764 | None:intergenic | 50.0% |
| ! | TATGACTATGAGGTGTCCGG+TGG | + | chr3.2:80940849-80940868 | None:intergenic | 50.0% |
| ! | TTGAAGGCGTGTCTGATGTC+TGG | - | chr3.2:80940647-80940666 | MS.gene40942:intron | 50.0% |
| !! | GCCAATACGGTTTTGTGCAG+TGG | + | chr3.2:80942264-80942283 | None:intergenic | 50.0% |
| !! | GGTTGGTCTGATGCAGTATC+TGG | + | chr3.2:80942347-80942366 | None:intergenic | 50.0% |
| AACTGCTCACCGCCATCTTG+GGG | + | chr3.2:80943575-80943594 | None:intergenic | 55.0% | |
| AGAGGCTTCAGGATGTGGAG+AGG | - | chr3.2:80941841-80941860 | MS.gene40942:CDS | 55.0% | |
| ATACAGGAAGGAGGGGTCCT+AGG | - | chr3.2:80940358-80940377 | MS.gene40942:CDS | 55.0% | |
| CAACTGCTCACCGCCATCTT+GGG | + | chr3.2:80943576-80943595 | None:intergenic | 55.0% | |
| CAATGCCTCGGCTTTCTCAC+TGG | + | chr3.2:80941362-80941381 | None:intergenic | 55.0% | |
| CAGTGAGAAAGCCGAGGCAT+TGG | - | chr3.2:80941360-80941379 | MS.gene40942:CDS | 55.0% | |
| CCGGGTAAAGGAAGCAGAGT+TGG | - | chr3.2:80942526-80942545 | MS.gene40942:intron | 55.0% | |
| CGTGGCTGCGTCAAATGAAG+AGG | - | chr3.2:80941168-80941187 | MS.gene40942:CDS | 55.0% | |
| GAGAGCTGCTCAAACTGAGG+CGG | - | chr3.2:80942658-80942677 | MS.gene40942:CDS | 55.0% | |
| GAGGCTTCAGGATGTGGAGA+GGG | - | chr3.2:80941842-80941861 | MS.gene40942:CDS | 55.0% | |
| GCAGCCACGGAAATGACTTC+TGG | + | chr3.2:80941157-80941176 | None:intergenic | 55.0% | |
| GGTAAAGGAAGCGGAGTTGG+AGG | - | chr3.2:80942811-80942830 | MS.gene40942:intron | 55.0% | |
| TCAACTGCTCACCGCCATCT+TGG | + | chr3.2:80943577-80943596 | None:intergenic | 55.0% | |
| TCGGGTAAAGGAAGCGGAGT+TGG | - | chr3.2:80942808-80942827 | MS.gene40942:intron | 55.0% | |
| TCTGCAGAGGCTTCAGGATG+TGG | - | chr3.2:80941836-80941855 | MS.gene40942:CDS | 55.0% | |
| ! | GCTCGAGGTATTACAAGGCC+GGG | - | chr3.2:80942508-80942527 | MS.gene40942:intron | 55.0% |
| ACAACCCCAGCTCCCCAAGA+TGG | - | chr3.2:80943560-80943579 | MS.gene40942:intron | 60.0% | |
| AGGAAGGAGGGGTCCTAGGT+AGG | - | chr3.2:80940362-80940381 | MS.gene40942:CDS | 60.0% | |
| CGAGTGCCAAAAGCAGCTCG+AGG | - | chr3.2:80942493-80942512 | MS.gene40942:intron | 60.0% | |
| GAAGCACAAACACGGAGGCC+AGG | + | chr3.2:80940749-80940768 | None:intergenic | 60.0% | |
| ACCCCAGCTCCCCAAGATGG+CGG | - | chr3.2:80943563-80943582 | MS.gene40942:intron | 65.0% | |
| ACCGCCATCTTGGGGAGCTG+GGG | + | chr3.2:80943567-80943586 | None:intergenic | 65.0% | |
| CACCGCCATCTTGGGGAGCT+GGG | + | chr3.2:80943568-80943587 | None:intergenic | 65.0% | |
| TCACCGCCATCTTGGGGAGC+TGG | + | chr3.2:80943569-80943588 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80940198 | 80943700 | 80940198 | ID=MS.gene40942 |
| chr3.2 | mRNA | 80940198 | 80943700 | 80940198 | ID=MS.gene40942.t1;Parent=MS.gene40942 |
| chr3.2 | exon | 80943584 | 80943700 | 80943584 | ID=MS.gene40942.t1.exon1;Parent=MS.gene40942.t1 |
| chr3.2 | CDS | 80943584 | 80943700 | 80943584 | ID=cds.MS.gene40942.t1;Parent=MS.gene40942.t1 |
| chr3.2 | exon | 80942594 | 80942771 | 80942594 | ID=MS.gene40942.t1.exon2;Parent=MS.gene40942.t1 |
| chr3.2 | CDS | 80942594 | 80942771 | 80942594 | ID=cds.MS.gene40942.t1;Parent=MS.gene40942.t1 |
| chr3.2 | exon | 80940745 | 80942357 | 80940745 | ID=MS.gene40942.t1.exon3;Parent=MS.gene40942.t1 |
| chr3.2 | CDS | 80940745 | 80942357 | 80940745 | ID=cds.MS.gene40942.t1;Parent=MS.gene40942.t1 |
| chr3.2 | exon | 80940198 | 80940482 | 80940198 | ID=MS.gene40942.t1.exon4;Parent=MS.gene40942.t1 |
| chr3.2 | CDS | 80940198 | 80940482 | 80940198 | ID=cds.MS.gene40942.t1;Parent=MS.gene40942.t1 |
| Gene Sequence |
| Protein sequence |
