Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06347.t1 | XP_003602691.1 | 88.6 | 735 | 70 | 2 | 1 | 730 | 1 | 726 | 7.70E-264 | 919.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06347.t1 | Q8LLE5 | 55.9 | 295 | 129 | 1 | 82 | 376 | 1 | 294 | 1.8e-75 | 285.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06347.t1 | G7J2M7 | 88.6 | 735 | 70 | 2 | 1 | 730 | 1 | 726 | 5.5e-264 | 919.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene06347 | 0.825698 | 4.07E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene06347 | 0.82873 | 7.64E-55 | -1.69E-46 |
| MS.gene049233 | MS.gene06347 | 0.894355 | 2.67E-75 | -1.69E-46 |
| MS.gene049260 | MS.gene06347 | 0.805614 | 1.23E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene06347 | 0.823961 | 1.04E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene06347 | 0.810635 | 1.05E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene06347 | 0.812231 | 4.70E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene06347 | 0.822058 | 2.90E-53 | -1.69E-46 |
| MS.gene050558 | MS.gene06347 | 0.832865 | 7.41E-56 | -1.69E-46 |
| MS.gene050560 | MS.gene06347 | 0.812313 | 4.51E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene06347 | 0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene050787 | MS.gene06347 | 0.812645 | 3.82E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene06347 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene06347 | 0.814275 | 1.67E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene06347 | 0.830385 | 3.03E-55 | -1.69E-46 |
| MS.gene052207 | MS.gene06347 | 0.805773 | 1.14E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene06347 | 0.814734 | 1.32E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene06347 | 0.812298 | 4.55E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene06347 | 0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene054473 | MS.gene06347 | 0.805213 | 1.49E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene06347 | 0.824411 | 8.19E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene06347 | 0.823516 | 1.33E-53 | -1.69E-46 |
| MS.gene055357 | MS.gene06347 | 0.80614 | 9.50E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene06347 | 0.846313 | 2.35E-59 | -1.69E-46 |
| MS.gene056875 | MS.gene06347 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene06347 | 0.862259 | 5.75E-64 | -1.69E-46 |
| MS.gene05761 | MS.gene06347 | 0.80487 | 1.76E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene06347 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene058736 | MS.gene06347 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene06347 | 0.809013 | 2.33E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene06347 | 0.843073 | 1.75E-58 | -1.69E-46 |
| MS.gene059609 | MS.gene06347 | 0.806022 | 1.01E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene06347 | -0.815101 | 1.10E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene06347 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene06347 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene06347 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene06347 | 0.801253 | 9.83E-49 | -1.69E-46 |
| MS.gene060918 | MS.gene06347 | 0.811809 | 5.82E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06347 | MS.gene002864 | PPI |
| MS.gene002176 | MS.gene06347 | PPI |
| MS.gene071949 | MS.gene06347 | PPI |
| MS.gene047901 | MS.gene06347 | PPI |
| MS.gene047904 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene026637 | PPI |
| MS.gene06347 | MS.gene047900 | PPI |
| MS.gene01826 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene00896 | PPI |
| MS.gene002867 | MS.gene06347 | PPI |
| MS.gene071947 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene75229 | PPI |
| MS.gene002174 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene047083 | PPI |
| MS.gene06347 | MS.gene93193 | PPI |
| MS.gene06347 | MS.gene002865 | PPI |
| MS.gene026126 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene01827 | PPI |
| MS.gene06347 | MS.gene99533 | PPI |
| MS.gene01146 | MS.gene06347 | PPI |
| MS.gene01838 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene84485 | PPI |
| MS.gene00893 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene00895 | PPI |
| MS.gene33602 | MS.gene06347 | PPI |
| MS.gene63019 | MS.gene06347 | PPI |
| MS.gene06347 | MS.gene01143 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06347.t1 | MTR_3g096990 | 89.660 | 735 | 62 | 2 | 1 | 730 | 1 | 726 | 0.0 | 1288 |
| MS.gene06347.t1 | MTR_3g096990 | 89.264 | 503 | 45 | 1 | 1 | 503 | 1 | 494 | 0.0 | 874 |
| MS.gene06347.t1 | MTR_3g096990 | 81.853 | 259 | 39 | 2 | 477 | 730 | 377 | 632 | 3.10e-134 | 410 |
| MS.gene06347.t1 | MTR_8g094760 | 61.996 | 521 | 154 | 6 | 1 | 501 | 1 | 497 | 0.0 | 554 |
| MS.gene06347.t1 | MTR_8g094760 | 55.642 | 257 | 107 | 4 | 474 | 727 | 379 | 631 | 1.93e-70 | 243 |
| MS.gene06347.t1 | MTR_8g094760 | 62.526 | 483 | 139 | 4 | 39 | 501 | 25 | 485 | 0.0 | 531 |
| MS.gene06347.t1 | MTR_8g094760 | 55.642 | 257 | 107 | 4 | 474 | 727 | 367 | 619 | 1.87e-70 | 242 |
| MS.gene06347.t1 | MTR_1g030010 | 42.020 | 683 | 327 | 16 | 68 | 725 | 147 | 785 | 1.69e-122 | 386 |
| MS.gene06347.t1 | MTR_3g113290 | 42.035 | 226 | 108 | 3 | 64 | 266 | 93 | 318 | 8.02e-37 | 149 |
| MS.gene06347.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 1.22e-33 | 139 |
| MS.gene06347.t1 | MTR_1g024095 | 32.181 | 376 | 197 | 9 | 1 | 338 | 1 | 356 | 1.69e-33 | 139 |
| MS.gene06347.t1 | MTR_5g021810 | 33.223 | 301 | 168 | 5 | 1 | 268 | 1 | 301 | 2.64e-30 | 128 |
| MS.gene06347.t1 | MTR_5g021810 | 32.781 | 302 | 169 | 5 | 1 | 268 | 1 | 302 | 9.61e-30 | 126 |
| MS.gene06347.t1 | MTR_4g094848 | 33.916 | 286 | 130 | 6 | 1 | 258 | 1 | 255 | 1.49e-28 | 123 |
| MS.gene06347.t1 | MTR_5g016830 | 28.467 | 411 | 215 | 13 | 1 | 389 | 1 | 354 | 7.16e-23 | 104 |
| MS.gene06347.t1 | MTR_4g085570 | 28.571 | 280 | 149 | 9 | 1 | 266 | 1 | 243 | 7.54e-12 | 69.3 |
| MS.gene06347.t1 | MTR_4g085570 | 28.571 | 280 | 149 | 9 | 1 | 266 | 1 | 243 | 9.50e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06347.t1 | AT3G05270 | 42.006 | 688 | 312 | 15 | 1 | 674 | 1 | 615 | 4.87e-131 | 402 |
| MS.gene06347.t1 | AT3G05270 | 42.006 | 688 | 312 | 15 | 1 | 674 | 1 | 615 | 4.87e-131 | 402 |
| MS.gene06347.t1 | AT3G05270 | 42.006 | 688 | 312 | 15 | 1 | 674 | 1 | 615 | 4.87e-131 | 402 |
| MS.gene06347.t1 | AT1G21810 | 36.581 | 626 | 267 | 22 | 79 | 674 | 13 | 538 | 4.37e-73 | 249 |
| MS.gene06347.t1 | AT1G21810 | 36.581 | 626 | 267 | 22 | 79 | 674 | 13 | 538 | 4.37e-73 | 249 |
| MS.gene06347.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 1.15e-69 | 240 |
| MS.gene06347.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 8 | 299 | 2.78e-68 | 239 |
| MS.gene06347.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 394 | 657 | 7.87e-12 | 69.3 |
| MS.gene06347.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 2.97e-68 | 239 |
| MS.gene06347.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 6.03e-12 | 69.7 |
| MS.gene06347.t1 | AT1G77580 | 45.190 | 343 | 136 | 6 | 46 | 387 | 42 | 333 | 2.97e-68 | 239 |
| MS.gene06347.t1 | AT1G77580 | 33.446 | 296 | 163 | 10 | 381 | 674 | 428 | 691 | 6.03e-12 | 69.7 |
| MS.gene06347.t1 | AT1G21810 | 34.008 | 494 | 215 | 21 | 211 | 674 | 3 | 415 | 1.88e-39 | 153 |
| MS.gene06347.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.34e-38 | 154 |
| MS.gene06347.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.34e-38 | 154 |
| MS.gene06347.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.34e-38 | 154 |
| MS.gene06347.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.34e-38 | 154 |
| MS.gene06347.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.34e-38 | 154 |
| MS.gene06347.t1 | AT1G19835 | 34.985 | 323 | 179 | 5 | 1 | 296 | 1 | 319 | 2.34e-38 | 154 |
| MS.gene06347.t1 | AT4G36120 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 3.75e-31 | 131 |
| MS.gene06347.t1 | AT4G36120 | 33.887 | 301 | 166 | 4 | 1 | 268 | 1 | 301 | 3.75e-31 | 131 |
| MS.gene06347.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.54e-28 | 122 |
| MS.gene06347.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.54e-28 | 122 |
| MS.gene06347.t1 | AT1G47900 | 36.842 | 228 | 121 | 3 | 64 | 268 | 114 | 341 | 2.56e-28 | 122 |
| MS.gene06347.t1 | AT2G23360 | 29.758 | 289 | 143 | 5 | 1 | 266 | 1 | 252 | 7.31e-17 | 85.5 |
Find 134 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAACAACTCTTGTAAT+TGG | 0.137119 | 3.1:-77410281 | MS.gene06347:CDS |
| CCACTCAAGCTCGTCTCTTT+TGG | 0.200759 | 3.1:+77410254 | None:intergenic |
| GGCTTTGTCTGCTGATAATT+TGG | 0.210676 | 3.1:-77408981 | MS.gene06347:CDS |
| CTGCTTTACCAAATCTTCTT+TGG | 0.249118 | 3.1:+77410745 | None:intergenic |
| AAGAGAAAGCAAGCAATATT+TGG | 0.255370 | 3.1:-77410040 | MS.gene06347:CDS |
| GTAATACCTCGAGCTGCTTT+TGG | 0.280342 | 3.1:+77409497 | None:intergenic |
| TGCTTTCTCTTTCTGCAGCT+TGG | 0.289852 | 3.1:+77410052 | None:intergenic |
| GCTTTCTCTTTCTGCAGCTT+GGG | 0.293528 | 3.1:+77410053 | None:intergenic |
| TCACCGCCATCTTGGGGAGC+TGG | 0.312775 | 3.1:+77408430 | None:intergenic |
| CTAAATCCATCTATTAGCTT+TGG | 0.314378 | 3.1:-77408364 | MS.gene06347:CDS |
| GTCTGCTTCAATTACAGAAT+TGG | 0.315854 | 3.1:-77409779 | MS.gene06347:CDS |
| GATCAAGTTAGTCATCTTAA+TGG | 0.317493 | 3.1:-77410375 | MS.gene06347:CDS |
| TGATCTTCTGCAGAGGCTTC+AGG | 0.318270 | 3.1:-77410166 | MS.gene06347:CDS |
| CAACTGCTCACCGCCATCTT+GGG | 0.319126 | 3.1:+77408423 | None:intergenic |
| GCAGTATTTCAGTGTCTTGA+TGG | 0.319413 | 3.1:+77408903 | None:intergenic |
| CACCGCCATCTTGGGGAGCT+GGG | 0.323771 | 3.1:+77408431 | None:intergenic |
| ATCAAGTTAGTCATCTTAAT+GGG | 0.324475 | 3.1:-77410374 | MS.gene06347:CDS |
| CATTAGTGCCAAAGAAGATT+TGG | 0.331279 | 3.1:-77410753 | MS.gene06347:CDS |
| GCAGCCTCGGAAATGACTTC+TGG | 0.331994 | 3.1:+77410842 | None:intergenic |
| GGAGAAGAAGCTAGCGAAAA+TGG | 0.341125 | 3.1:-77409560 | MS.gene06347:CDS |
| GGTTGGTCTGATGCAGTATC+TGG | 0.344154 | 3.1:+77409652 | None:intergenic |
| TGTTCTGCTCAAGACCTTGT+AGG | 0.358228 | 3.1:+77408310 | None:intergenic |
| ACTGATGTGCATACTCTAAC+TGG | 0.369885 | 3.1:-77410800 | MS.gene06347:CDS |
| TCAACTGCTCACCGCCATCT+TGG | 0.379423 | 3.1:+77408422 | None:intergenic |
| GACAGCTTCTTCAGCAACTT+TGG | 0.380920 | 3.1:+77410718 | None:intergenic |
| ACAGATAGCATGTCAGATAA+TGG | 0.389217 | 3.1:-77409892 | MS.gene06347:CDS |
| GATGGATGATTTCCTCGAAA+TGG | 0.408615 | 3.1:-77409692 | MS.gene06347:CDS |
| TTCCCTGGCCAACATTTGGT+TGG | 0.409152 | 3.1:+77409635 | None:intergenic |
| CAGCAAGCCTTTCCATTTCG+AGG | 0.412193 | 3.1:+77409680 | None:intergenic |
| GAAAGTGATATGCGTAAATT+CGG | 0.418055 | 3.1:-77409850 | MS.gene06347:CDS |
| TGCAAACAACTCTTGTAATT+GGG | 0.422194 | 3.1:-77410280 | MS.gene06347:CDS |
| TGTGAATGACTCTGCATAAA+CGG | 0.424603 | 3.1:+77409912 | None:intergenic |
| TCTGTTCCCTGGCCAACATT+TGG | 0.426822 | 3.1:+77409631 | None:intergenic |
| TCATCTTAATGGGGAACTAA+AGG | 0.428665 | 3.1:-77410364 | MS.gene06347:CDS |
| GGCCATGAGTCATAATGCTT+TGG | 0.432790 | 3.1:+77409802 | None:intergenic |
| ACTTGATTCAGAGGACACTA+TGG | 0.441112 | 3.1:-77408476 | MS.gene06347:CDS |
| TAAAATTCAAAACCATTGAA+TGG | 0.442991 | 3.1:-77410086 | MS.gene06347:CDS |
| CTGCATAGGGAAGGTATTGA+TGG | 0.443757 | 3.1:-77408884 | MS.gene06347:CDS |
| TTTGGCCAAGTGTGAAAAGT+TGG | 0.448967 | 3.1:-77408963 | MS.gene06347:CDS |
| CTCTTCATTTGACGCAGCCT+CGG | 0.453100 | 3.1:+77410829 | None:intergenic |
| AAAATTCAAAACCATTGAAT+GGG | 0.454203 | 3.1:-77410085 | MS.gene06347:CDS |
| GGTGCTCAAATCCCATTCAA+TGG | 0.455832 | 3.1:+77410074 | None:intergenic |
| TCTGCAGAGGCTTCAGGATG+TGG | 0.457307 | 3.1:-77410160 | MS.gene06347:CDS |
| GTTGAAGTCCCTTGCAACAT+TGG | 0.462272 | 3.1:-77408509 | MS.gene06347:CDS |
| AAGATTATCTGCTCATGATC+AGG | 0.469911 | 3.1:-77411709 | MS.gene06347:intron |
| AGACCAACCAAATGTTGGCC+AGG | 0.478188 | 3.1:-77409638 | MS.gene06347:CDS |
| AGAAGAACTGTGAGTTTCAC+TGG | 0.479117 | 3.1:+77411755 | None:intergenic |
| AGATAATGGAGAGAGGCTAT+TGG | 0.482617 | 3.1:-77409878 | MS.gene06347:CDS |
| AGTTGTTTGCAACAGCTTCA+AGG | 0.483000 | 3.1:+77410292 | None:intergenic |
| CCGGGTAAAGGAAGCAGAGT+TGG | 0.490552 | 3.1:-77409470 | MS.gene06347:CDS |
| ACCACTGCACAAAACCGTAT+TGG | 0.496783 | 3.1:-77409736 | MS.gene06347:CDS |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.501906 | 3.1:-77410713 | MS.gene06347:intron |
| CATACACTGTGTCTGTTCCC+TGG | 0.502835 | 3.1:+77409620 | None:intergenic |
| GGTATCACAAAGTCGGGTAA+AGG | 0.503164 | 3.1:-77409200 | MS.gene06347:CDS |
| AGCTCGAGGTATTACAAGGC+CGG | 0.505834 | 3.1:-77409489 | MS.gene06347:CDS |
| GCTCAAGGTATCACAAAGTC+GGG | 0.506661 | 3.1:-77409206 | MS.gene06347:CDS |
| TCGGGTAAAGGAAGCGGAGT+TGG | 0.507512 | 3.1:-77409188 | MS.gene06347:CDS |
| TATAGATGGAACGAAGGAGT+TGG | 0.511290 | 3.1:-77411809 | None:intergenic |
| AACTGCTCACCGCCATCTTG+GGG | 0.513505 | 3.1:+77408424 | None:intergenic |
| CCAAAAGAGACGAGCTTGAG+TGG | 0.515425 | 3.1:-77410254 | MS.gene06347:CDS |
| TTCAACTCAGATCGATCTGA+TGG | 0.516137 | 3.1:-77409710 | MS.gene06347:CDS |
| TTGGTAGGTTCTATCCTACA+AGG | 0.519182 | 3.1:-77408324 | MS.gene06347:CDS |
| ATATGCGTAAATTCGGAGGC+AGG | 0.521010 | 3.1:-77409843 | MS.gene06347:CDS |
| GGTATTACAAGGCCGGGTAA+AGG | 0.522637 | 3.1:-77409482 | MS.gene06347:CDS |
| GAGCCACGACATTCAATCTC+TGG | 0.528546 | 3.1:+77409980 | None:intergenic |
| AGGAAGAGATTGACAAAGAG+CGG | 0.530251 | 3.1:-77409285 | MS.gene06347:CDS |
| AGACACTGAAATACTGCATA+GGG | 0.534338 | 3.1:-77408897 | MS.gene06347:CDS |
| CATTCTCTGTCAACGATCGC+AGG | 0.538257 | 3.1:-77409951 | MS.gene06347:CDS |
| TCTGAGTTGAAAGGCCAATA+CGG | 0.539705 | 3.1:+77409722 | None:intergenic |
| GGTAAAGGAAGCGGAGTTGG+AGG | 0.539727 | 3.1:-77409185 | MS.gene06347:CDS |
| AGGAAGAGATTGAGAAAGAG+CGG | 0.539922 | 3.1:-77409003 | MS.gene06347:CDS |
| CGGAAAACCATCGAATCTCT+AGG | 0.540417 | 3.1:-77408538 | MS.gene06347:CDS |
| ACCGCCATCTTGGGGAGCTG+GGG | 0.541230 | 3.1:+77408432 | None:intergenic |
| AGCTCAAGGTATCACAAAGT+CGG | 0.543179 | 3.1:-77409207 | MS.gene06347:CDS |
| GGTTCAAAAGAATGATGCAT+TGG | 0.543300 | 3.1:-77409581 | MS.gene06347:CDS |
| GGGAACTAAAGGATTGTATG+AGG | 0.545681 | 3.1:-77410353 | MS.gene06347:CDS |
| GTGGAAAGTTACTGAGCTTG+AGG | 0.546401 | 3.1:-77410235 | MS.gene06347:CDS |
| ATTATATTTAGGCTGGGAGA+AGG | 0.546698 | 3.1:-77410466 | MS.gene06347:intron |
| CTGCTGTCCTAGAGATTCGA+TGG | 0.547891 | 3.1:+77408531 | None:intergenic |
| GAGGCTTCAGGATGTGGAGA+GGG | 0.549030 | 3.1:-77410154 | MS.gene06347:CDS |
| AGACACAGTGTATGCTGAAG+TGG | 0.551827 | 3.1:-77409611 | MS.gene06347:CDS |
| GCAGGAGAAGGAACTAGCAT+TGG | 0.555868 | 3.1:-77408584 | MS.gene06347:intron |
| AGACTTCATACTTGATTCAG+AGG | 0.557101 | 3.1:-77408485 | MS.gene06347:CDS |
| TCGGAAATGACTTCTGGAGA+TGG | 0.558364 | 3.1:+77410848 | None:intergenic |
| ACAAAGTCGGGTAAAGGAAG+CGG | 0.558654 | 3.1:-77409194 | MS.gene06347:CDS |
| AACCAAAGCATTATGACTCA+TGG | 0.559723 | 3.1:-77409804 | MS.gene06347:CDS |
| CGAGGCTGCGTCAAATGAAG+AGG | 0.560290 | 3.1:-77410828 | MS.gene06347:CDS |
| GGTAAAGGAAGCAGAGTTGG+AGG | 0.562324 | 3.1:-77409467 | MS.gene06347:CDS |
| GGAAGAGATTGACAAAGAGC+GGG | 0.567707 | 3.1:-77409284 | MS.gene06347:CDS |
| CCAACTCTGCTTCCTTTACC+CGG | 0.569027 | 3.1:+77409470 | None:intergenic |
| TGGCGAGTTAATGTTCAAGC+AGG | 0.569151 | 3.1:-77408864 | MS.gene06347:intron |
| GCTCGAGGTATTACAAGGCC+GGG | 0.574482 | 3.1:-77409488 | MS.gene06347:CDS |
| TGCAGATAAACTCGAGCTAG+AGG | 0.575538 | 3.1:-77409254 | MS.gene06347:CDS |
| GGAAGAGATTGAGAAAGAGC+GGG | 0.579765 | 3.1:-77409002 | MS.gene06347:CDS |
| AAGACACTGAAATACTGCAT+AGG | 0.582843 | 3.1:-77408898 | MS.gene06347:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.1:-77409059 | MS.gene06347:CDS |
| ACTGAGAGCTGCTCAAACTG+AGG | 0.583542 | 3.1:-77409341 | MS.gene06347:CDS |
| GGAGGCAGGGAGATAAATGA+AGG | 0.583949 | 3.1:-77409829 | MS.gene06347:CDS |
| ATGATTTCCTCGAAATGGAA+AGG | 0.588479 | 3.1:-77409687 | MS.gene06347:CDS |
| TGAAGTCTTCCAATGTTGCA+AGG | 0.589752 | 3.1:+77408500 | None:intergenic |
| ACAACCCCAGCTCCCCAAGA+TGG | 0.590488 | 3.1:-77408436 | MS.gene06347:CDS |
| TATTATTATAGATGGAACGA+AGG | 0.591091 | 3.1:-77411815 | None:intergenic |
| AAGCAGCTCGAGGTATTACA+AGG | 0.592236 | 3.1:-77409493 | MS.gene06347:CDS |
| TGGAACGAAGGAGTTGGATG+TGG | 0.592305 | 3.1:-77411803 | MS.gene06347:CDS |
| TCAGATCGATCTGAGTTGAA+AGG | 0.597854 | 3.1:+77409713 | None:intergenic |
| GCATCAGACCAACCAAATGT+TGG | 0.607554 | 3.1:-77409643 | MS.gene06347:CDS |
| TAATGGAGAGAGGCTATTGG+TGG | 0.608912 | 3.1:-77409875 | MS.gene06347:CDS |
| AGAACCTACCAAAACTGAAG+TGG | 0.609934 | 3.1:+77408335 | None:intergenic |
| GACCAACCAAATGTTGGCCA+GGG | 0.612070 | 3.1:-77409637 | MS.gene06347:CDS |
| GAAGTCTTCCAATGTTGCAA+GGG | 0.615238 | 3.1:+77408501 | None:intergenic |
| AGAGGCTTCAGGATGTGGAG+AGG | 0.619121 | 3.1:-77410155 | MS.gene06347:CDS |
| GGCACTAATGTCTAAGAGAG+CGG | 0.621884 | 3.1:+77410766 | None:intergenic |
| TGGAGATGGAACAGTTTGAG+TGG | 0.623998 | 3.1:+77410862 | None:intergenic |
| AGATAAAATTGAGCTAGAGA+TGG | 0.626676 | 3.1:-77409533 | MS.gene06347:CDS |
| GTATGCTGAAGTGGAAGCAT+TGG | 0.628182 | 3.1:-77409602 | MS.gene06347:CDS |
| ACCCCAGCTCCCCAAGATGG+CGG | 0.628407 | 3.1:-77408433 | MS.gene06347:CDS |
| ATCTCCAGAAGTCATTTCCG+AGG | 0.630862 | 3.1:-77410846 | MS.gene06347:CDS |
| GAGAGCTGCTCAAACTGAGG+CGG | 0.637369 | 3.1:-77409338 | MS.gene06347:CDS |
| TTAACTCTGATCTTCTGCAG+AGG | 0.638024 | 3.1:-77410173 | MS.gene06347:CDS |
| TTTGGAGAGTATAACGAAGG+TGG | 0.647288 | 3.1:-77410022 | MS.gene06347:CDS |
| TATGCGTAAATTCGGAGGCA+GGG | 0.647344 | 3.1:-77409842 | MS.gene06347:CDS |
| AATTCTGTAATTGAAGCAGA+CGG | 0.653774 | 3.1:+77409781 | None:intergenic |
| TGCTGCAAAACAGCAAAATG+CGG | 0.660097 | 3.1:-77410406 | MS.gene06347:CDS |
| AGATAAACTCGAGCTAGAGG+TGG | 0.661721 | 3.1:-77409251 | MS.gene06347:CDS |
| TGAACTACAATCTCGACTCG+AGG | 0.662262 | 3.1:-77410112 | MS.gene06347:CDS |
| TCAAGTTAGTCATCTTAATG+GGG | 0.667984 | 3.1:-77410373 | MS.gene06347:CDS |
| AGTGATATGCGTAAATTCGG+AGG | 0.673306 | 3.1:-77409847 | MS.gene06347:CDS |
| ACTGAAATACTGCATAGGGA+AGG | 0.673392 | 3.1:-77408893 | MS.gene06347:CDS |
| GCATGTCAGATAATGGAGAG+AGG | 0.673908 | 3.1:-77409885 | MS.gene06347:CDS |
| CGAGTGCCAAAAGCAGCTCG+AGG | 0.681288 | 3.1:-77409503 | MS.gene06347:CDS |
| GTGCCAGAGATTGAATGTCG+TGG | 0.689035 | 3.1:-77409983 | MS.gene06347:CDS |
| ACTAATGTCTAAGAGAGCGG+CGG | 0.698941 | 3.1:+77410769 | None:intergenic |
| GAAGAAGCTAGCGAAAATGG+AGG | 0.702295 | 3.1:-77409557 | MS.gene06347:CDS |
| ATATTTGGAGAGTATAACGA+AGG | 0.713817 | 3.1:-77410025 | MS.gene06347:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAATTGAATATTATTTA+AGG | + | chr3.1:77408926-77408945 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATAAACCATAA+CGG | + | chr3.1:77409565-77409584 | None:intergenic | 10.0% |
| !!! | CATTGTTTTATTTTATTCTA+CGG | - | chr3.1:77409116-77409135 | MS.gene06347:CDS | 15.0% |
| !!! | TTACATGATTTTAAGTTTAT+AGG | - | chr3.1:77409082-77409101 | MS.gene06347:CDS | 15.0% |
| !! | AAAATTCAAAACCATTGAAT+GGG | - | chr3.1:77410037-77410056 | MS.gene06347:CDS | 20.0% |
| !! | AATATTAATATAGCAGTCTT+TGG | + | chr3.1:77409634-77409653 | None:intergenic | 20.0% |
| !! | ATATTTGATTATATTTAGGC+TGG | - | chr3.1:77409649-77409668 | MS.gene06347:CDS | 20.0% |
| !! | TAAAATTCAAAACCATTGAA+TGG | - | chr3.1:77410036-77410055 | MS.gene06347:CDS | 20.0% |
| !! | TATTTGATTATATTTAGGCT+GGG | - | chr3.1:77409650-77409669 | MS.gene06347:CDS | 20.0% |
| !!! | AGTTAAAATTTTAACATGTG+AGG | - | chr3.1:77411424-77411443 | MS.gene06347:intron | 20.0% |
| !!! | ATTCAACAAGGTTTTTAATA+GGG | + | chr3.1:77409038-77409057 | None:intergenic | 20.0% |
| !!! | CAAAATTCCAAAATATTTTC+TGG | + | chr3.1:77411459-77411478 | None:intergenic | 20.0% |
| !!! | CAGAAAATATTTTGGAATTT+TGG | - | chr3.1:77411457-77411476 | MS.gene06347:intron | 20.0% |
| !!! | TCATAAACCATCTTATATTT+TGG | - | chr3.1:77411504-77411523 | MS.gene06347:intron | 20.0% |
| !!! | TTAACTTCTATTTTCAATAC+AGG | - | chr3.1:77408465-77408484 | MS.gene06347:CDS | 20.0% |
| ! | AATAACGTAGCCAAAAAAAT+AGG | + | chr3.1:77408444-77408463 | None:intergenic | 25.0% |
| ! | AATCAGACCAAAAAACAAAA+AGG | + | chr3.1:77409518-77409537 | None:intergenic | 25.0% |
| ! | AATGAAGGAGAAGTTTAAAA+TGG | + | chr3.1:77409449-77409468 | None:intergenic | 25.0% |
| ! | AATGACATAATTCAATGTGT+CGG | + | chr3.1:77408821-77408840 | None:intergenic | 25.0% |
| ! | AATGATGCCAAAATATAAGA+TGG | + | chr3.1:77411514-77411533 | None:intergenic | 25.0% |
| ! | ACCTAATATCATCTAAACAT+AGG | - | chr3.1:77409596-77409615 | MS.gene06347:CDS | 25.0% |
| ! | ACCTATGTTTAGATGATATT+AGG | + | chr3.1:77409600-77409619 | None:intergenic | 25.0% |
| ! | ATCAAGTTAGTCATCTTAAT+GGG | - | chr3.1:77409748-77409767 | MS.gene06347:CDS | 25.0% |
| ! | ATCTAAACATAGGTTATCAA+AGG | - | chr3.1:77409606-77409625 | MS.gene06347:CDS | 25.0% |
| ! | CTCTCATTAAAACAAAATTG+AGG | - | chr3.1:77408669-77408688 | MS.gene06347:intron | 25.0% |
| ! | TAGTAACTAGTAACCATATT+TGG | - | chr3.1:77408558-77408577 | MS.gene06347:CDS | 25.0% |
| !! | GATTCAACAAGGTTTTTAAT+AGG | + | chr3.1:77409039-77409058 | None:intergenic | 25.0% |
| !! | TTTTAAACTTCTCCTTCATT+TGG | - | chr3.1:77409449-77409468 | MS.gene06347:CDS | 25.0% |
| !!! | AGGTTGTCATTTTTGTTAAT+AGG | - | chr3.1:77408587-77408606 | MS.gene06347:intron | 25.0% |
| AAGAGAAAGCAAGCAATATT+TGG | - | chr3.1:77410082-77410101 | MS.gene06347:CDS | 30.0% | |
| AAGCAACAATTTGAACAATC+AGG | + | chr3.1:77409185-77409204 | None:intergenic | 30.0% | |
| AATTCTGTAATTGAAGCAGA+CGG | + | chr3.1:77410344-77410363 | None:intergenic | 30.0% | |
| AGATAAAATTGAGCTAGAGA+TGG | - | chr3.1:77410589-77410608 | MS.gene06347:intron | 30.0% | |
| AGCAACAATTTGAACAATCA+GGG | + | chr3.1:77409184-77409203 | None:intergenic | 30.0% | |
| CTTGTATTCTTGATTCAACA+AGG | + | chr3.1:77409050-77409069 | None:intergenic | 30.0% | |
| GAAAGTGATATGCGTAAATT+CGG | - | chr3.1:77410272-77410291 | MS.gene06347:CDS | 30.0% | |
| GATCAAGTTAGTCATCTTAA+TGG | - | chr3.1:77409747-77409766 | MS.gene06347:CDS | 30.0% | |
| TAAAATTGACAGCCAAATGA+AGG | + | chr3.1:77409464-77409483 | None:intergenic | 30.0% | |
| TCAAGTTAGTCATCTTAATG+GGG | - | chr3.1:77409749-77409768 | MS.gene06347:CDS | 30.0% | |
| TGCAAACAACTCTTGTAATT+GGG | - | chr3.1:77409842-77409861 | MS.gene06347:CDS | 30.0% | |
| TTGCAAACAACTCTTGTAAT+TGG | - | chr3.1:77409841-77409860 | MS.gene06347:CDS | 30.0% | |
| ! | AAATTGTTGCTTGTTTGAGA+CGG | - | chr3.1:77409193-77409212 | MS.gene06347:CDS | 30.0% |
| ! | AAGGTTTTTAATAGGGACTT+GGG | + | chr3.1:77409031-77409050 | None:intergenic | 30.0% |
| ! | ATATTTGGAGAGTATAACGA+AGG | - | chr3.1:77410097-77410116 | MS.gene06347:CDS | 30.0% |
| ! | CCAGATTCCAGAAAATATTT+TGG | - | chr3.1:77411449-77411468 | MS.gene06347:intron | 30.0% |
| ! | CTAAATCCATCTATTAGCTT+TGG | - | chr3.1:77411758-77411777 | MS.gene06347:CDS | 30.0% |
| ! | CTTCTATTTTCAATACAGGA+AGG | - | chr3.1:77408469-77408488 | MS.gene06347:CDS | 30.0% |
| ! | CTTTTTCCAAAGCTAATAGA+TGG | + | chr3.1:77411767-77411786 | None:intergenic | 30.0% |
| ! | TATTTTCAATACAGGAAGGA+GGG | - | chr3.1:77408473-77408492 | MS.gene06347:CDS | 30.0% |
| !!! | AGCATTCTCATTTTTTGCTT+GGG | + | chr3.1:77411035-77411054 | None:intergenic | 30.0% |
| !!! | AGCTTTCTCATTTTTTTCTC+GGG | + | chr3.1:77410753-77410772 | None:intergenic | 30.0% |
| !!! | CAGCTTTCTCATTTTTTTCT+CGG | + | chr3.1:77410754-77410773 | None:intergenic | 30.0% |
| !!! | CCAAAATATTTTCTGGAATC+TGG | + | chr3.1:77411452-77411471 | None:intergenic | 30.0% |
| !!! | GTATCGACCTTTTTGTTTTT+TGG | - | chr3.1:77409508-77409527 | MS.gene06347:CDS | 30.0% |
| AACGTAGCCAAAAAAATAGG+AGG | + | chr3.1:77408441-77408460 | None:intergenic | 35.0% | |
| AAGAAGAAGAAGAGAGATTG+AGG | - | chr3.1:77408619-77408638 | MS.gene06347:intron | 35.0% | |
| AAGACACTGAAATACTGCAT+AGG | - | chr3.1:77411224-77411243 | MS.gene06347:intron | 35.0% | |
| AAGATTATCTGCTCATGATC+AGG | - | chr3.1:77408413-77408432 | MS.gene06347:CDS | 35.0% | |
| AATGTTCAAGCAGGTAAGTT+TGG | - | chr3.1:77411267-77411286 | MS.gene06347:intron | 35.0% | |
| ACAACCTTCACTTCCAAATA+TGG | + | chr3.1:77408574-77408593 | None:intergenic | 35.0% | |
| ACAGATAGCATGTCAGATAA+TGG | - | chr3.1:77410230-77410249 | MS.gene06347:CDS | 35.0% | |
| AGAAGAAGAAGAGAGATTGA+GGG | - | chr3.1:77408620-77408639 | MS.gene06347:intron | 35.0% | |
| AGACACTGAAATACTGCATA+GGG | - | chr3.1:77411225-77411244 | MS.gene06347:intron | 35.0% | |
| AGACTTCATACTTGATTCAG+AGG | - | chr3.1:77411637-77411656 | MS.gene06347:intron | 35.0% | |
| AGGGATCTCAAACTTAAAAG+CGG | + | chr3.1:77409165-77409184 | None:intergenic | 35.0% | |
| ATGATTTCCTCGAAATGGAA+AGG | - | chr3.1:77410435-77410454 | MS.gene06347:CDS | 35.0% | |
| ATTATATTTAGGCTGGGAGA+AGG | - | chr3.1:77409656-77409675 | MS.gene06347:CDS | 35.0% | |
| CATTAGTGCCAAAGAAGATT+TGG | - | chr3.1:77409369-77409388 | MS.gene06347:CDS | 35.0% | |
| CTGCTTTACCAAATCTTCTT+TGG | + | chr3.1:77409380-77409399 | None:intergenic | 35.0% | |
| GATCTCAAAAATCTGTTCAC+TGG | - | chr3.1:77410814-77410833 | MS.gene06347:CDS | 35.0% | |
| GGTTCAAAAGAATGATGCAT+TGG | - | chr3.1:77410541-77410560 | MS.gene06347:intron | 35.0% | |
| GTAACCATATTTGGAAGTGA+AGG | - | chr3.1:77408567-77408586 | MS.gene06347:CDS | 35.0% | |
| GTCTGCTTCAATTACAGAAT+TGG | - | chr3.1:77410343-77410362 | MS.gene06347:CDS | 35.0% | |
| TCATCTTAATGGGGAACTAA+AGG | - | chr3.1:77409758-77409777 | MS.gene06347:CDS | 35.0% | |
| TGTGAATGACTCTGCATAAA+CGG | + | chr3.1:77410213-77410232 | None:intergenic | 35.0% | |
| ! | AACAATCTCACTCTTTTTGG+AGG | - | chr3.1:77411354-77411373 | MS.gene06347:intron | 35.0% |
| ! | AACCAAAGCATTATGACTCA+TGG | - | chr3.1:77410318-77410337 | MS.gene06347:CDS | 35.0% |
| ! | ACGCCTTCAATCAAAAGTAT+TGG | + | chr3.1:77408763-77408782 | None:intergenic | 35.0% |
| ! | ATTTTCAATACAGGAAGGAG+GGG | - | chr3.1:77408474-77408493 | MS.gene06347:CDS | 35.0% |
| ! | CAAGGTTTTTAATAGGGACT+TGG | + | chr3.1:77409032-77409051 | None:intergenic | 35.0% |
| ! | CTATTTTCAATACAGGAAGG+AGG | - | chr3.1:77408472-77408491 | MS.gene06347:CDS | 35.0% |
| ! | GAGGGAAAGCTAAAATGTTT+TGG | - | chr3.1:77408638-77408657 | MS.gene06347:intron | 35.0% |
| ! | GCTAACAATCTCACTCTTTT+TGG | - | chr3.1:77411351-77411370 | MS.gene06347:intron | 35.0% |
| ! | TTCTTCCAACTTTTCACACT+TGG | + | chr3.1:77411167-77411186 | None:intergenic | 35.0% |
| !! | ATTTTGGCATCATTTGATGC+AGG | - | chr3.1:77411520-77411539 | MS.gene06347:intron | 35.0% |
| !! | GCACCAATACTTTTGATTGA+AGG | - | chr3.1:77408757-77408776 | MS.gene06347:intron | 35.0% |
| !!! | CAGCATTCTCATTTTTTGCT+TGG | + | chr3.1:77411036-77411055 | None:intergenic | 35.0% |
| !!! | TCAGGTACCTCCTATTTTTT+TGG | - | chr3.1:77408431-77408450 | MS.gene06347:CDS | 35.0% |
| AACTTAAAAGCGGACAGAAC+AGG | + | chr3.1:77409155-77409174 | None:intergenic | 40.0% | |
| ACTAGTTACTACTACTACCC+TGG | + | chr3.1:77408549-77408568 | None:intergenic | 40.0% | |
| ACTGAAATACTGCATAGGGA+AGG | - | chr3.1:77411229-77411248 | MS.gene06347:intron | 40.0% | |
| ACTGATGTGCATACTCTAAC+TGG | - | chr3.1:77409322-77409341 | MS.gene06347:CDS | 40.0% | |
| ACTTGATTCAGAGGACACTA+TGG | - | chr3.1:77411646-77411665 | MS.gene06347:intron | 40.0% | |
| AGAACCTACCAAAACTGAAG+TGG | + | chr3.1:77411790-77411809 | None:intergenic | 40.0% | |
| AGAAGAACTGTGAGTTTCAC+TGG | + | chr3.1:77408370-77408389 | None:intergenic | 40.0% | |
| AGCTAGCTGTTCTTTGTGTT+TGG | - | chr3.1:77408509-77408528 | MS.gene06347:CDS | 40.0% | |
| AGGAAGAGATTGACAAAGAG+CGG | - | chr3.1:77410837-77410856 | MS.gene06347:CDS | 40.0% | |
| AGGAAGAGATTGAGAAAGAG+CGG | - | chr3.1:77411119-77411138 | MS.gene06347:intron | 40.0% | |
| AGTGATATGCGTAAATTCGG+AGG | - | chr3.1:77410275-77410294 | MS.gene06347:CDS | 40.0% | |
| AGTTGTTTGCAACAGCTTCA+AGG | + | chr3.1:77409833-77409852 | None:intergenic | 40.0% | |
| ATAGGGACTTGGGTATTATG+AGG | + | chr3.1:77409021-77409040 | None:intergenic | 40.0% | |
| CAAGCTATGAAGCACAAACA+CGG | + | chr3.1:77408883-77408902 | None:intergenic | 40.0% | |
| CTAGCTGTTCTTTGTGTTTG+GGG | - | chr3.1:77408511-77408530 | MS.gene06347:CDS | 40.0% | |
| CTAGTTACTACTACTACCCT+GGG | + | chr3.1:77408548-77408567 | None:intergenic | 40.0% | |
| CTCAAAAATCTGTTCACTGG+AGG | - | chr3.1:77410817-77410836 | MS.gene06347:CDS | 40.0% | |
| GAAGTCTTCCAATGTTGCAA+GGG | + | chr3.1:77411624-77411643 | None:intergenic | 40.0% | |
| GATGGATGATTTCCTCGAAA+TGG | - | chr3.1:77410430-77410449 | MS.gene06347:CDS | 40.0% | |
| GCAGTATTTCAGTGTCTTGA+TGG | + | chr3.1:77411222-77411241 | None:intergenic | 40.0% | |
| GCTAGCTGTTCTTTGTGTTT+GGG | - | chr3.1:77408510-77408529 | MS.gene06347:CDS | 40.0% | |
| GGGAACTAAAGGATTGTATG+AGG | - | chr3.1:77409769-77409788 | MS.gene06347:CDS | 40.0% | |
| TGAAGTCTTCCAATGTTGCA+AGG | + | chr3.1:77411625-77411644 | None:intergenic | 40.0% | |
| TGCTGCAAAACAGCAAAATG+CGG | - | chr3.1:77409716-77409735 | MS.gene06347:CDS | 40.0% | |
| TTAACTCTGATCTTCTGCAG+AGG | - | chr3.1:77409949-77409968 | MS.gene06347:CDS | 40.0% | |
| TTCAACTCAGATCGATCTGA+TGG | - | chr3.1:77410412-77410431 | MS.gene06347:CDS | 40.0% | |
| TTGGTAGGTTCTATCCTACA+AGG | - | chr3.1:77411798-77411817 | MS.gene06347:CDS | 40.0% | |
| TTTGGCCAAGTGTGAAAAGT+TGG | - | chr3.1:77411159-77411178 | MS.gene06347:intron | 40.0% | |
| ! | AGCTCAAGGTATCACAAAGT+CGG | - | chr3.1:77410915-77410934 | MS.gene06347:intron | 40.0% |
| ! | ATGCCACTTAAATACTCCAC+CGG | - | chr3.1:77408956-77408975 | MS.gene06347:CDS | 40.0% |
| ! | CTAGAGATTCGATGGTTTTC+CGG | + | chr3.1:77411586-77411605 | None:intergenic | 40.0% |
| ! | CTAGTAGATTTTCTGAGTGC+CGG | - | chr3.1:77411564-77411583 | MS.gene06347:intron | 40.0% |
| ! | GGAAAAAGCCACTTCAGTTT+TGG | - | chr3.1:77411779-77411798 | MS.gene06347:CDS | 40.0% |
| ! | GGCTTTGTCTGCTGATAATT+TGG | - | chr3.1:77411141-77411160 | MS.gene06347:intron | 40.0% |
| ! | TAGTATGACTATGAGGTGTC+CGG | + | chr3.1:77408978-77408997 | None:intergenic | 40.0% |
| ! | TCAGATCGATCTGAGTTGAA+AGG | + | chr3.1:77410412-77410431 | None:intergenic | 40.0% |
| ! | TCTGAGTTGAAAGGCCAATA+CGG | + | chr3.1:77410403-77410422 | None:intergenic | 40.0% |
| ! | TTCAAGTTCTGTCTCCGTTA+TGG | - | chr3.1:77409548-77409567 | MS.gene06347:CDS | 40.0% |
| ! | TTTGGAGAGTATAACGAAGG+TGG | - | chr3.1:77410100-77410119 | MS.gene06347:CDS | 40.0% |
| !! | AAAGCCACTTCAGTTTTGGT+AGG | - | chr3.1:77411783-77411802 | MS.gene06347:CDS | 40.0% |
| !! | AGATAATGGAGAGAGGCTAT+TGG | - | chr3.1:77410244-77410263 | MS.gene06347:CDS | 40.0% |
| !! | ATCTCACTCTTTTTGGAGGA+TGG | - | chr3.1:77411358-77411377 | MS.gene06347:intron | 40.0% |
| !! | CAAAAGTATTGGTGCTACAG+AGG | + | chr3.1:77408752-77408771 | None:intergenic | 40.0% |
| !! | GTGATACCTTGAGCTGTTTT+TGG | + | chr3.1:77410910-77410929 | None:intergenic | 40.0% |
| AAAGGTCGATACCAATGCCT+CGG | + | chr3.1:77409500-77409519 | None:intergenic | 45.0% | |
| ACAAAGTCGGGTAAAGGAAG+CGG | - | chr3.1:77410928-77410947 | MS.gene06347:intron | 45.0% | |
| ACCACTGCACAAAACCGTAT+TGG | - | chr3.1:77410386-77410405 | MS.gene06347:CDS | 45.0% | |
| ACTAATGTCTAAGAGAGCGG+CGG | + | chr3.1:77409356-77409375 | None:intergenic | 45.0% | |
| AGACACAGTGTATGCTGAAG+TGG | - | chr3.1:77410511-77410530 | MS.gene06347:intron | 45.0% | |
| AGATAAACTCGAGCTAGAGG+TGG | - | chr3.1:77410871-77410890 | MS.gene06347:CDS | 45.0% | |
| ATATGCGTAAATTCGGAGGC+AGG | - | chr3.1:77410279-77410298 | MS.gene06347:CDS | 45.0% | |
| ATCAGTGTATGTGTCATGCC+TGG | - | chr3.1:77408854-77408873 | MS.gene06347:intron | 45.0% | |
| ATCTCCAGAAGTCATTTCCG+AGG | - | chr3.1:77409276-77409295 | MS.gene06347:CDS | 45.0% | |
| CGGAAAACCATCGAATCTCT+AGG | - | chr3.1:77411584-77411603 | MS.gene06347:intron | 45.0% | |
| CGTCGAGTAGTATGACTATG+AGG | + | chr3.1:77408985-77409004 | None:intergenic | 45.0% | |
| GAAGAAGCTAGCGAAAATGG+AGG | - | chr3.1:77410565-77410584 | MS.gene06347:intron | 45.0% | |
| GACAGCTTCTTCAGCAACTT+TGG | + | chr3.1:77409407-77409426 | None:intergenic | 45.0% | |
| GCATCAGACCAACCAAATGT+TGG | - | chr3.1:77410479-77410498 | MS.gene06347:intron | 45.0% | |
| GCATCATTTGATGCAGGAGA+AGG | - | chr3.1:77411526-77411545 | MS.gene06347:intron | 45.0% | |
| GCTTTCTCTTTCTGCAGCTT+GGG | + | chr3.1:77410072-77410091 | None:intergenic | 45.0% | |
| GGAAGAGATTGACAAAGAGC+GGG | - | chr3.1:77410838-77410857 | MS.gene06347:CDS | 45.0% | |
| GGAAGAGATTGAGAAAGAGC+GGG | - | chr3.1:77411120-77411139 | MS.gene06347:intron | 45.0% | |
| GGAGAAGAAGCTAGCGAAAA+TGG | - | chr3.1:77410562-77410581 | MS.gene06347:intron | 45.0% | |
| GGCACTAATGTCTAAGAGAG+CGG | + | chr3.1:77409359-77409378 | None:intergenic | 45.0% | |
| GGCCATGAGTCATAATGCTT+TGG | + | chr3.1:77410323-77410342 | None:intergenic | 45.0% | |
| GGTATCACAAAGTCGGGTAA+AGG | - | chr3.1:77410922-77410941 | MS.gene06347:intron | 45.0% | |
| GGTGCTCAAATCCCATTCAA+TGG | + | chr3.1:77410051-77410070 | None:intergenic | 45.0% | |
| GTGGAAAGTTACTGAGCTTG+AGG | - | chr3.1:77409887-77409906 | MS.gene06347:CDS | 45.0% | |
| GTTGAAGTCCCTTGCAACAT+TGG | - | chr3.1:77411613-77411632 | MS.gene06347:intron | 45.0% | |
| TAATGGAGAGAGGCTATTGG+TGG | - | chr3.1:77410247-77410266 | MS.gene06347:CDS | 45.0% | |
| TACTACTCGACGTCAGACTT+AGG | - | chr3.1:77408993-77409012 | MS.gene06347:CDS | 45.0% | |
| TATGCGTAAATTCGGAGGCA+GGG | - | chr3.1:77410280-77410299 | MS.gene06347:CDS | 45.0% | |
| TGCAGATAAACTCGAGCTAG+AGG | - | chr3.1:77410868-77410887 | MS.gene06347:CDS | 45.0% | |
| TGCTTTCTCTTTCTGCAGCT+TGG | + | chr3.1:77410073-77410092 | None:intergenic | 45.0% | |
| TGGAGATGGAACAGTTTGAG+TGG | + | chr3.1:77409263-77409282 | None:intergenic | 45.0% | |
| TGGCATATACCTGTACAGCA+CGG | + | chr3.1:77409243-77409262 | None:intergenic | 45.0% | |
| TGGCGAGTTAATGTTCAAGC+AGG | - | chr3.1:77411258-77411277 | MS.gene06347:intron | 45.0% | |
| TGGGGTTATGTGAATTCCCA+GGG | - | chr3.1:77408529-77408548 | MS.gene06347:CDS | 45.0% | |
| TTGGGGTTATGTGAATTCCC+AGG | - | chr3.1:77408528-77408547 | MS.gene06347:CDS | 45.0% | |
| TTTATCCAGTGAGAAAGCCG+AGG | - | chr3.1:77409480-77409499 | MS.gene06347:CDS | 45.0% | |
| ! | AAGCAGCTCGAGGTATTACA+AGG | - | chr3.1:77410629-77410648 | MS.gene06347:intron | 45.0% |
| ! | ATGTTTTCTCCGTGCTGTAC+AGG | - | chr3.1:77409231-77409250 | MS.gene06347:CDS | 45.0% |
| ! | GCTCAAGGTATCACAAAGTC+GGG | - | chr3.1:77410916-77410935 | MS.gene06347:intron | 45.0% |
| ! | GTATGCTGAAGTGGAAGCAT+TGG | - | chr3.1:77410520-77410539 | MS.gene06347:intron | 45.0% |
| ! | TCGGAAATGACTTCTGGAGA+TGG | + | chr3.1:77409277-77409296 | None:intergenic | 45.0% |
| ! | TGAACTACAATCTCGACTCG+AGG | - | chr3.1:77410010-77410029 | MS.gene06347:CDS | 45.0% |
| ! | TGTCCGGTGGAGTATTTAAG+TGG | + | chr3.1:77408962-77408981 | None:intergenic | 45.0% |
| !! | ATTCAATGTGTCGGTGCTGT+AGG | + | chr3.1:77408812-77408831 | None:intergenic | 45.0% |
| !! | CTGCATAGGGAAGGTATTGA+TGG | - | chr3.1:77411238-77411257 | MS.gene06347:intron | 45.0% |
| !! | GCATGTCAGATAATGGAGAG+AGG | - | chr3.1:77410237-77410256 | MS.gene06347:CDS | 45.0% |
| !! | GTAATACCTCGAGCTGCTTT+TGG | + | chr3.1:77410628-77410647 | None:intergenic | 45.0% |
| !! | ATTAATATTTGATTATATTT+AGG | - | chr3.1:77409645-77409664 | MS.gene06347:CDS | 5.0% |
| ACTGAGAGCTGCTCAAACTG+AGG | - | chr3.1:77410781-77410800 | MS.gene06347:CDS | 50.0% | |
| AGACCAACCAAATGTTGGCC+AGG | - | chr3.1:77410484-77410503 | MS.gene06347:intron | 50.0% | |
| CAGCAAGCCTTTCCATTTCG+AGG | + | chr3.1:77410445-77410464 | None:intergenic | 50.0% | |
| CATACACTGTGTCTGTTCCC+TGG | + | chr3.1:77410505-77410524 | None:intergenic | 50.0% | |
| CATTCTCTGTCAACGATCGC+AGG | - | chr3.1:77410171-77410190 | MS.gene06347:CDS | 50.0% | |
| CCAAAAGAGACGAGCTTGAG+TGG | - | chr3.1:77409868-77409887 | MS.gene06347:CDS | 50.0% | |
| CCAACTCTGCTTCCTTTACC+CGG | + | chr3.1:77410655-77410674 | None:intergenic | 50.0% | |
| CGAGTGCCAAAAACAGCTCA+AGG | - | chr3.1:77410901-77410920 | MS.gene06347:intron | 50.0% | |
| CTCTTCATTTGACGCAGCCT+CGG | + | chr3.1:77409296-77409315 | None:intergenic | 50.0% | |
| CTGCTGTCCTAGAGATTCGA+TGG | + | chr3.1:77411594-77411613 | None:intergenic | 50.0% | |
| GAACAGCTAGCTACCTACCT+AGG | + | chr3.1:77408501-77408520 | None:intergenic | 50.0% | |
| GACCAACCAAATGTTGGCCA+GGG | - | chr3.1:77410485-77410504 | MS.gene06347:intron | 50.0% | |
| GAGCCACGACATTCAATCTC+TGG | + | chr3.1:77410145-77410164 | None:intergenic | 50.0% | |
| GCAGGAGAAGGAACTAGCAT+TGG | - | chr3.1:77411538-77411557 | MS.gene06347:intron | 50.0% | |
| GCTATGAAGCACAAACACGG+AGG | + | chr3.1:77408880-77408899 | None:intergenic | 50.0% | |
| GGAGGCAGGGAGATAAATGA+AGG | - | chr3.1:77410293-77410312 | MS.gene06347:CDS | 50.0% | |
| GGTAAAGGAAGCAGAGTTGG+AGG | - | chr3.1:77410655-77410674 | MS.gene06347:intron | 50.0% | |
| GGTATTACAAGGCCGGGTAA+AGG | - | chr3.1:77410640-77410659 | MS.gene06347:intron | 50.0% | |
| GTGCCAGAGATTGAATGTCG+TGG | - | chr3.1:77410139-77410158 | MS.gene06347:CDS | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | - | chr3.1:77409409-77409428 | MS.gene06347:CDS | 50.0% | |
| TCTGTTCCCTGGCCAACATT+TGG | + | chr3.1:77410494-77410513 | None:intergenic | 50.0% | |
| TGATCTTCTGCAGAGGCTTC+AGG | - | chr3.1:77409956-77409975 | MS.gene06347:CDS | 50.0% | |
| TGGAACGAAGGAGTTGGATG+TGG | - | chr3.1:77408319-77408338 | MS.gene06347:CDS | 50.0% | |
| TTCCCTGGCCAACATTTGGT+TGG | + | chr3.1:77410490-77410509 | None:intergenic | 50.0% | |
| ! | AGCTCGAGGTATTACAAGGC+CGG | - | chr3.1:77410633-77410652 | MS.gene06347:intron | 50.0% |
| ! | CCACTCAAGCTCGTCTCTTT+TGG | + | chr3.1:77409871-77409890 | None:intergenic | 50.0% |
| ! | TATGACTATGAGGTGTCCGG+TGG | + | chr3.1:77408975-77408994 | None:intergenic | 50.0% |
| ! | TTGAAGGCGTGTCTGATGTC+TGG | - | chr3.1:77408773-77408792 | MS.gene06347:intron | 50.0% |
| !! | GCCAATACGGTTTTGTGCAG+TGG | + | chr3.1:77410390-77410409 | None:intergenic | 50.0% |
| !! | GGTTGGTCTGATGCAGTATC+TGG | + | chr3.1:77410473-77410492 | None:intergenic | 50.0% |
| AACTGCTCACCGCCATCTTG+GGG | + | chr3.1:77411701-77411720 | None:intergenic | 55.0% | |
| AGAGGCTTCAGGATGTGGAG+AGG | - | chr3.1:77409967-77409986 | MS.gene06347:CDS | 55.0% | |
| ATACAGGAAGGAGGGGTCCT+AGG | - | chr3.1:77408481-77408500 | MS.gene06347:CDS | 55.0% | |
| CAACTGCTCACCGCCATCTT+GGG | + | chr3.1:77411702-77411721 | None:intergenic | 55.0% | |
| CAATGCCTCGGCTTTCTCAC+TGG | + | chr3.1:77409488-77409507 | None:intergenic | 55.0% | |
| CAGTGAGAAAGCCGAGGCAT+TGG | - | chr3.1:77409486-77409505 | MS.gene06347:CDS | 55.0% | |
| CCGGGTAAAGGAAGCAGAGT+TGG | - | chr3.1:77410652-77410671 | MS.gene06347:intron | 55.0% | |
| CGAGGCTGCGTCAAATGAAG+AGG | - | chr3.1:77409294-77409313 | MS.gene06347:CDS | 55.0% | |
| GAGAGCTGCTCAAACTGAGG+CGG | - | chr3.1:77410784-77410803 | MS.gene06347:CDS | 55.0% | |
| GAGGCTTCAGGATGTGGAGA+GGG | - | chr3.1:77409968-77409987 | MS.gene06347:CDS | 55.0% | |
| GCAGCCTCGGAAATGACTTC+TGG | + | chr3.1:77409283-77409302 | None:intergenic | 55.0% | |
| GGTAAAGGAAGCGGAGTTGG+AGG | - | chr3.1:77410937-77410956 | MS.gene06347:intron | 55.0% | |
| TCAACTGCTCACCGCCATCT+TGG | + | chr3.1:77411703-77411722 | None:intergenic | 55.0% | |
| TCGGGTAAAGGAAGCGGAGT+TGG | - | chr3.1:77410934-77410953 | MS.gene06347:intron | 55.0% | |
| TCTGCAGAGGCTTCAGGATG+TGG | - | chr3.1:77409962-77409981 | MS.gene06347:CDS | 55.0% | |
| ! | GCTCGAGGTATTACAAGGCC+GGG | - | chr3.1:77410634-77410653 | MS.gene06347:intron | 55.0% |
| ACAACCCCAGCTCCCCAAGA+TGG | - | chr3.1:77411686-77411705 | MS.gene06347:intron | 60.0% | |
| AGGAAGGAGGGGTCCTAGGT+AGG | - | chr3.1:77408485-77408504 | MS.gene06347:CDS | 60.0% | |
| CGAGTGCCAAAAGCAGCTCG+AGG | - | chr3.1:77410619-77410638 | MS.gene06347:intron | 60.0% | |
| GAAGCACAAACACGGAGGCC+AGG | + | chr3.1:77408875-77408894 | None:intergenic | 60.0% | |
| ACCCCAGCTCCCCAAGATGG+CGG | - | chr3.1:77411689-77411708 | MS.gene06347:intron | 65.0% | |
| ACCGCCATCTTGGGGAGCTG+GGG | + | chr3.1:77411693-77411712 | None:intergenic | 65.0% | |
| CACCGCCATCTTGGGGAGCT+GGG | + | chr3.1:77411694-77411713 | None:intergenic | 65.0% | |
| TCACCGCCATCTTGGGGAGC+TGG | + | chr3.1:77411695-77411714 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 77408318 | 77411826 | 77408318 | ID=MS.gene06347 |
| chr3.1 | mRNA | 77408318 | 77411826 | 77408318 | ID=MS.gene06347.t1;Parent=MS.gene06347 |
| chr3.1 | exon | 77411710 | 77411826 | 77411710 | ID=MS.gene06347.t1.exon1;Parent=MS.gene06347.t1 |
| chr3.1 | CDS | 77411710 | 77411826 | 77411710 | ID=cds.MS.gene06347.t1;Parent=MS.gene06347.t1 |
| chr3.1 | exon | 77410714 | 77410891 | 77410714 | ID=MS.gene06347.t1.exon2;Parent=MS.gene06347.t1 |
| chr3.1 | CDS | 77410714 | 77410891 | 77410714 | ID=cds.MS.gene06347.t1;Parent=MS.gene06347.t1 |
| chr3.1 | exon | 77408865 | 77410477 | 77408865 | ID=MS.gene06347.t1.exon3;Parent=MS.gene06347.t1 |
| chr3.1 | CDS | 77408865 | 77410477 | 77408865 | ID=cds.MS.gene06347.t1;Parent=MS.gene06347.t1 |
| chr3.1 | exon | 77408318 | 77408602 | 77408318 | ID=MS.gene06347.t1.exon4;Parent=MS.gene06347.t1 |
| chr3.1 | CDS | 77408318 | 77408602 | 77408318 | ID=cds.MS.gene06347.t1;Parent=MS.gene06347.t1 |
| Gene Sequence |
| Protein sequence |
