AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012002

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012002.t1 MTR_8g077340 69.322 590 60 4 1 520 1 539 0.0 665
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012002.t1 AT2G18340 30.398 477 257 12 42 500 33 452 3.55e-12 68.9
MS.gene012002.t1 AT2G18340 29.851 469 248 12 42 500 33 430 5.01e-11 65.1

Find 117 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTATCTTTAGCATTAT+TGG 0.097673 8.2:+28150777 None:intergenic
TTCTTTATCTTTAGCATTAT+TGG 0.097673 8.2:+28150864 None:intergenic
GCCTCAAAGGCCACAGATTC+AGG 0.177634 8.2:-28151774 MS.gene012002:CDS
GGCCTTTGGATTTCGTTTCT+TGG 0.193418 8.2:+28151170 None:intergenic
TCCAACTGCACCCGAGGCCT+TGG 0.263118 8.2:+28150546 None:intergenic
TCCAGCTGCATCCGAGGCCT+TGG 0.270678 8.2:+28150981 None:intergenic
TCCACCTACTTCCGGGGCCT+TGG 0.273004 8.2:+28151425 None:intergenic
TCCAGCTGCATCTGAGGCCT+TGG 0.276584 8.2:+28150894 None:intergenic
CTTTATTACCACCTGCTTCC+GGG 0.276984 8.2:+28151148 None:intergenic
TCTTTATTACCACCTGCTTC+CGG 0.285383 8.2:+28151147 None:intergenic
GCTTTATTTCCACCTACTTC+CGG 0.290103 8.2:+28150625 None:intergenic
GCTTTATTTCCACCTACTTC+CGG 0.290103 8.2:+28151417 None:intergenic
CCCTGAATCTGTGGCCTTTG+AGG 0.291421 8.2:+28151773 None:intergenic
AAATGCAAAATTTGTCTTGT+TGG 0.293483 8.2:-28152152 MS.gene012002:CDS
CTTTATTTCCACCTACTTCC+GGG 0.306933 8.2:+28150626 None:intergenic
CTTTATTTCCACCTACTTCC+GGG 0.306933 8.2:+28151418 None:intergenic
CCACCTGCTTCCGGGGCCTT+TGG 0.311200 8.2:+28151156 None:intergenic
TCCAACTGCATCGGAGGCCT+TGG 0.311930 8.2:+28150459 None:intergenic
TCCAACTGCATCCGAGGTCT+TGG 0.318861 8.2:+28150720 None:intergenic
AATTGTTCTCATAGACATTT+CGG 0.320051 8.2:-28151852 MS.gene012002:intron
GATAAAGAAAATAGTGCATC+TGG 0.322305 8.2:-28150850 MS.gene012002:CDS
CCATATAGCCGCTGCTGATC+AGG 0.338715 8.2:-28151658 MS.gene012002:intron
CCACCTACTTCCGGGGCCTT+AGG 0.357844 8.2:+28150634 None:intergenic
CCACCTACTTCCGGGGCCTT+GGG 0.381111 8.2:+28151426 None:intergenic
GCTAAAGCAGGCGGTGCATA+TGG 0.388330 8.2:-28151198 MS.gene012002:CDS
GATAAAGAAAATAGCGCATC+TGG 0.392610 8.2:-28151294 MS.gene012002:CDS
GATAAAGAAAATAGTGCATC+TGG 0.393061 8.2:-28151381 MS.gene012002:CDS
AACAAAAGGAGCAGCTGATC+AGG 0.398629 8.2:-28151550 MS.gene012002:CDS
AACAAAAGGAGCAGCTGATC+AGG 0.398629 8.2:-28151604 MS.gene012002:CDS
CCAGCTGCATCCGAGGCCTT+GGG 0.399647 8.2:+28150982 None:intergenic
GAAAGAAAAGCCCAAGGCCT+CGG 0.402206 8.2:-28150557 MS.gene012002:CDS
CCAACTGCACCCGAGGCCTT+GGG 0.402344 8.2:+28150547 None:intergenic
CCAGCTGCATCTGAGGCCTT+GGG 0.414281 8.2:+28150895 None:intergenic
TTCTTTATCTTTAGCAACAT+TGG 0.416336 8.2:+28150690 None:intergenic
TTCTTTATCTTTAGCAACAT+TGG 0.416336 8.2:+28150951 None:intergenic
TTCTTTATCTTTAGCAACAT+TGG 0.416336 8.2:+28151038 None:intergenic
GATAAAGAAAATAATGCATC+TGG 0.428421 8.2:-28150763 MS.gene012002:CDS
AATCCAAAGGCCCCGGAAGC+AGG 0.430052 8.2:-28151159 MS.gene012002:CDS
CCCAAGGCCTCGGATGCAGC+TGG 0.431675 8.2:-28150982 MS.gene012002:CDS
GGCCTTAGGATTTCTGTGCT+TGG 0.432119 8.2:+28150648 None:intergenic
TGTATCTCCTACTGAGTCTT+GGG 0.438610 8.2:+28150382 None:intergenic
CCGAAGGCCTCGGATGCAGC+TGG 0.439921 8.2:-28151069 MS.gene012002:CDS
TTCTTTATCTTTAGCAACAT+TGG 0.444772 8.2:+28150516 None:intergenic
CCCAAGGCCTCGGGTGCAGT+TGG 0.446487 8.2:-28150547 MS.gene012002:CDS
GATAAAGAAAATAGTGCATC+CGG 0.454204 8.2:-28150937 MS.gene012002:CDS
GATAAAGAAAATAGTGCATC+CGG 0.454204 8.2:-28151024 MS.gene012002:CDS
GATAAAGAAAATAGTGCATC+CGG 0.454204 8.2:-28151111 MS.gene012002:CDS
GAAACAAAAGCCCAAGGCCT+CGG 0.455604 8.2:-28150992 MS.gene012002:CDS
GAAACAAAAGCCGAAGGCCT+CGG 0.457036 8.2:-28151079 MS.gene012002:CDS
CCAACTGCATCCGAGGTCTT+GGG 0.457194 8.2:+28150721 None:intergenic
CCAGCTGCATCCGAGGCCTT+CGG 0.460223 8.2:+28151069 None:intergenic
CCAACTGCATCGGAGGCCTT+GGG 0.465410 8.2:+28150460 None:intergenic
GATAAAGAAAATAGTGCAGC+TGG 0.473192 8.2:-28150676 MS.gene012002:CDS
CCTAAGGCCTCAGATGCAGC+TGG 0.474048 8.2:-28150808 MS.gene012002:CDS
GAAACAAAAGCCTAAGGCCT+CGG 0.476376 8.2:-28151349 MS.gene012002:CDS
ATGTATCTCCTACTGAGTCT+TGG 0.482455 8.2:+28150381 None:intergenic
TTGATCTCCAGCTGCATCTG+AGG 0.484086 8.2:+28150888 None:intergenic
ACAAAAGGAGCAGCTGAAGA+TGG 0.487902 8.2:-28151495 MS.gene012002:CDS
AAAGAAAAGCCCAAGGCCTC+GGG 0.488466 8.2:-28150556 MS.gene012002:CDS
CCAGCTGCATCTGAGGCCTT+AGG 0.491503 8.2:+28150808 None:intergenic
GATGCTAAAGAGAAAACAAA+AGG 0.507878 8.2:-28151510 MS.gene012002:CDS
GATGCTAAAGAGAAAACAAA+AGG 0.507878 8.2:-28151564 MS.gene012002:CDS
GATGCTAAAGAGAAAACAAA+AGG 0.507878 8.2:-28151618 MS.gene012002:CDS
TCTTTAACATCAGAGGCCTT+AGG 0.511034 8.2:+28151252 None:intergenic
AGCTGAAGCTGCTGCCTCAA+AGG 0.511276 8.2:-28151787 MS.gene012002:CDS
TACTTTCTCTTTAACATCAG+AGG 0.515846 8.2:+28151245 None:intergenic
CCTCAAAGGCCACAGATTCA+GGG 0.518776 8.2:-28151773 MS.gene012002:CDS
GAAACGAAATCCAAAGGCCC+CGG 0.519490 8.2:-28151166 MS.gene012002:CDS
CCCAAGGCCTCAGATGCAGC+TGG 0.519853 8.2:-28150895 MS.gene012002:CDS
TAGACATTTCGGCTCAAAAG+AGG 0.520960 8.2:-28151841 MS.gene012002:CDS
AATCCTAAGGCCCCGGAAGT+AGG 0.522917 8.2:-28150637 MS.gene012002:CDS
AATCCCAAGGCCCCGGAAGT+AGG 0.522917 8.2:-28151429 MS.gene012002:CDS
AAAGCAAGTAGTGCATATAG+TGG 0.531958 8.2:-28151465 MS.gene012002:CDS
TTTATGCCCAGCTGCATCTG+AGG 0.536299 8.2:+28150801 None:intergenic
AGCTTTATCTCCAACTGCAT+CGG 0.544510 8.2:+28150450 None:intergenic
GCAACGAAATCCCAAGGCCC+CGG 0.545665 8.2:-28151436 MS.gene012002:CDS
GTTGCTAAAGATAAAGAAAG+TGG 0.546622 8.2:-28150511 MS.gene012002:CDS
GCACAGAAATCCTAAGGCCC+CGG 0.547115 8.2:-28150644 MS.gene012002:CDS
CCAACTGCATCCGAGGCCTT+AGG 0.550068 8.2:+28151339 None:intergenic
ATAAAGAAAATAGTGCATCT+GGG 0.554138 8.2:-28150849 MS.gene012002:CDS
CCCAAGGCCTCCGATGCAGT+TGG 0.557431 8.2:-28150460 MS.gene012002:CDS
CCCAAGACCTCGGATGCAGT+TGG 0.557431 8.2:-28150721 MS.gene012002:CDS
CCCAAGGCCCCGGAAGTAGG+TGG 0.560916 8.2:-28151426 MS.gene012002:CDS
CCTAAGGCCTCGGATGCAGT+TGG 0.566355 8.2:-28151339 MS.gene012002:CDS
CCTAAGGCCCCGGAAGTAGG+TGG 0.569842 8.2:-28150634 MS.gene012002:CDS
TTTATTACCACCTGCTTCCG+GGG 0.571551 8.2:+28151149 None:intergenic
AGCCAAGAAACAAAAGCCTA+AGG 0.575617 8.2:-28150824 MS.gene012002:CDS
GAAACAAAAGCCCAAGACCT+CGG 0.579490 8.2:-28150731 MS.gene012002:CDS
CTAAGGCCTCAGATGCAGCT+GGG 0.582970 8.2:-28150807 MS.gene012002:CDS
CTTATCTCCAACTGCACCCG+AGG 0.585136 8.2:+28150540 None:intergenic
AACCAAGCACAGAAATCCTA+AGG 0.585415 8.2:-28150650 MS.gene012002:CDS
TTTATCTCCAGCTGCATCCG+AGG 0.588573 8.2:+28150975 None:intergenic
TTTATCTCCAGCTGCATCCG+AGG 0.588573 8.2:+28151062 None:intergenic
TGAAAAGCCCAAGACTCAGT+AGG 0.590771 8.2:-28150389 None:intergenic
AGCCAAGAAACAAAAGCCTA+AGG 0.592040 8.2:-28151268 MS.gene012002:CDS
AGCCAAGAAACAAAAGCCTA+AGG 0.592040 8.2:-28151355 MS.gene012002:CDS
AGCCAAGAAACGAAATCCAA+AGG 0.597720 8.2:-28151172 MS.gene012002:CDS
GAACACGGAAAAGCTAAAGC+AGG 0.601184 8.2:-28151210 MS.gene012002:CDS
TCTACACAACTCTACACATA+CGG 0.601407 8.2:+28152117 None:intergenic
TTTATCTCCAACTGCATCCG+AGG 0.602067 8.2:+28150714 None:intergenic
AGCCCATCGAGCAAAAGTCT+CGG 0.609947 8.2:+28152027 None:intergenic
AAAGAAAATAGTGCAGCTGG+TGG 0.613688 8.2:-28150673 MS.gene012002:CDS
TTTATCTCCAACTGCATCGG+AGG 0.614203 8.2:+28150453 None:intergenic
TTTATCTCCAACTGCATCCG+AGG 0.614203 8.2:+28151332 None:intergenic
CCAAAGGCCCCGGAAGCAGG+TGG 0.615708 8.2:-28151156 MS.gene012002:CDS
GTAAAAGAAGCAGTTGAACA+CGG 0.616205 8.2:-28151225 MS.gene012002:CDS
TAAAGAAAATAGTGCATCTG+GGG 0.619982 8.2:-28150848 MS.gene012002:CDS
AAACAAGCAACGAAATCCCA+AGG 0.624410 8.2:-28151442 MS.gene012002:CDS
TTTATTTCCACCTACTTCCG+GGG 0.641914 8.2:+28150627 None:intergenic
TTTATTTCCACCTACTTCCG+GGG 0.641914 8.2:+28151419 None:intergenic
AGCCAAGAAACAAAAGCCCA+AGG 0.644467 8.2:-28150911 MS.gene012002:CDS
AGCCAAGAAACAAAAGCCCA+AGG 0.644467 8.2:-28150998 MS.gene012002:CDS
AGCCAAGAAACAAAAGCCGA+AGG 0.644467 8.2:-28151085 MS.gene012002:CDS
CACGGAAAAGCTAAAGCAGG+CGG 0.657070 8.2:-28151207 MS.gene012002:CDS
AGCCAAGAAAGAAAAGCCCA+AGG 0.677269 8.2:-28150476 MS.gene012002:CDS
AGCCAAGAAAGAAAAGCCCA+AGG 0.677269 8.2:-28150563 MS.gene012002:CDS
GTTGTGTAGACCAGACGATG+TGG 0.680290 8.2:-28152104 MS.gene012002:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATAACTTTTTAAGTT+TGG + chr8.2:28150663-28150682 None:intergenic 15.0%
!! GAATTAATATATACCAGTAA+GGG + chr8.2:28150847-28150866 None:intergenic 20.0%
!! TGAATTAATATATACCAGTA+AGG + chr8.2:28150848-28150867 None:intergenic 20.0%
!! TTCTTTATCTTTAGCATTAT+TGG + chr8.2:28151692-28151711 None:intergenic 20.0%
!!! GTTTTCTTGTTCATAAAATT+AGG - chr8.2:28150637-28150656 MS.gene012002:CDS 20.0%
! AAATGCAAAATTTGTCTTGT+TGG - chr8.2:28150401-28150420 MS.gene012002:CDS 25.0%
! AATTGTTCTCATAGACATTT+CGG - chr8.2:28150701-28150720 MS.gene012002:CDS 25.0%
! ACAATATTACCTAGATTTCA+TGG - chr8.2:28150615-28150634 MS.gene012002:CDS 25.0%
! ATAAAGAAAATAGTGCATCT+GGG - chr8.2:28151173-28151192 MS.gene012002:CDS 25.0%
! GATAAAGAAAATAATGCATC+TGG - chr8.2:28151790-28151809 MS.gene012002:CDS 25.0%
! TTCTTTATCTTTAGCAACAT+TGG + chr8.2:28151161-28151180 None:intergenic 25.0%
!!! TTTTGTTTTCTCTTTAGCAT+CGG + chr8.2:28150936-28150955 None:intergenic 25.0%
ACAAGAAAACCATGAAATCT+AGG + chr8.2:28150627-28150646 None:intergenic 30.0%
GATAAAGAAAATAGTGCATC+CGG - chr8.2:28151172-28151191 MS.gene012002:CDS 30.0%
GATAAAGAAAATAGTGCATC+TGG - chr8.2:28151172-28151191 MS.gene012002:CDS 30.0%
GATGCTAAAGAGAAAACAAA+AGG - chr8.2:28150935-28150954 MS.gene012002:CDS 30.0%
GTTGCTAAAGATAAAGAAAG+TGG - chr8.2:28152042-28152061 MS.gene012002:CDS 30.0%
TAAAGAAAATAGTGCATCTG+GGG - chr8.2:28151174-28151193 MS.gene012002:CDS 30.0%
TACTTTCTCTTTAACATCAG+AGG + chr8.2:28151311-28151330 None:intergenic 30.0%
!!! ATATTTTTTCCCTGAATCTG+TGG + chr8.2:28150792-28150811 None:intergenic 30.0%
AAAGCAAGTAGTGCATATAG+TGG - chr8.2:28151088-28151107 MS.gene012002:CDS 35.0%
GAAAATGCCAAAGAAAAAGC+TGG - chr8.2:28150474-28150493 MS.gene012002:CDS 35.0%
GATAAAGAAAATAGCGCATC+TGG - chr8.2:28151259-28151278 MS.gene012002:CDS 35.0%
GATAAAGAAAATAGTGCAGC+TGG - chr8.2:28151877-28151896 MS.gene012002:intron 35.0%
GTAAAAGAAGCAGTTGAACA+CGG - chr8.2:28151328-28151347 MS.gene012002:CDS 35.0%
TCATTGACATTAACCCTTAC+TGG - chr8.2:28150831-28150850 MS.gene012002:CDS 35.0%
TCTACACAACTCTACACATA+CGG + chr8.2:28150439-28150458 None:intergenic 35.0%
!! AAAAGTCTCGGATTTTTCAG+TGG + chr8.2:28150517-28150536 None:intergenic 35.0%
AAACAAGCAACGAAATCCCA+AGG - chr8.2:28151111-28151130 MS.gene012002:CDS 40.0%
AAAGAAAATAGTGCAGCTGG+TGG - chr8.2:28151880-28151899 MS.gene012002:intron 40.0%
AACCAAGCACAGAAATCCTA+AGG - chr8.2:28151903-28151922 MS.gene012002:intron 40.0%
AGCCAAGAAACAAAAGCCTA+AGG - chr8.2:28151198-28151217 MS.gene012002:CDS 40.0%
AGCCAAGAAACGAAATCCAA+AGG - chr8.2:28151381-28151400 MS.gene012002:CDS 40.0%
AGCTGATCAGGCTTCAAAAA+CGG - chr8.2:28150961-28150980 MS.gene012002:CDS 40.0%
TAGACATTTCGGCTCAAAAG+AGG - chr8.2:28150712-28150731 MS.gene012002:CDS 40.0%
TCAGGGAAAAAATATGCAGC+AGG - chr8.2:28150797-28150816 MS.gene012002:CDS 40.0%
TCTTTAACATCAGAGGCCTT+AGG + chr8.2:28151304-28151323 None:intergenic 40.0%
TCTTTATTACCACCTGCTTC+CGG + chr8.2:28151409-28151428 None:intergenic 40.0%
TGCTGATCAGGCTTCAAAAA+CGG - chr8.2:28150907-28150926 MS.gene012002:CDS 40.0%
TTTATTTCCACCTACTTCCG+GGG + chr8.2:28151137-28151156 None:intergenic 40.0%
! AGCTTTATCTCCAACTGCAT+CGG + chr8.2:28151227-28151246 None:intergenic 40.0%
! CTTTATTTCCACCTACTTCC+GGG + chr8.2:28151138-28151157 None:intergenic 40.0%
!! CTTTTGTTTCTTGGCTTCAC+CGG + chr8.2:28151194-28151213 None:intergenic 40.0%
!! GCTTTATTTCCACCTACTTC+CGG + chr8.2:28151139-28151158 None:intergenic 40.0%
!! TACCTCTCCAGCTTTTTCTT+TGG + chr8.2:28150484-28150503 None:intergenic 40.0%
AACAAAAGGAGCAGCTGATC+AGG - chr8.2:28150949-28150968 MS.gene012002:CDS 45.0%
ACAAAAGGAGCAGCTGAAGA+TGG - chr8.2:28151058-28151077 MS.gene012002:CDS 45.0%
AGCCAAGAAACAAAAGCCCA+AGG - chr8.2:28151555-28151574 MS.gene012002:CDS 45.0%
AGCCAAGAAACAAAAGCCGA+AGG - chr8.2:28151468-28151487 MS.gene012002:CDS 45.0%
AGCCAAGAAAGAAAAGCCCA+AGG - chr8.2:28151990-28152009 MS.gene012002:intron 45.0%
CTTTATTACCACCTGCTTCC+GGG + chr8.2:28151408-28151427 None:intergenic 45.0%
GAAACAAAAGCCCAAGACCT+CGG - chr8.2:28151822-28151841 MS.gene012002:CDS 45.0%
GAAACAAAAGCCTAAGGCCT+CGG - chr8.2:28151204-28151223 MS.gene012002:CDS 45.0%
GAACACGGAAAAGCTAAAGC+AGG - chr8.2:28151343-28151362 MS.gene012002:CDS 45.0%
GGCCTTTGGATTTCGTTTCT+TGG + chr8.2:28151386-28151405 None:intergenic 45.0%
TGCCAAAGAAAAAGCTGGAG+AGG - chr8.2:28150479-28150498 MS.gene012002:CDS 45.0%
TTTATCTCCAACTGCATCCG+AGG + chr8.2:28151224-28151243 None:intergenic 45.0%
TTTATCTCCAACTGCATCGG+AGG + chr8.2:28152103-28152122 None:intergenic 45.0%
TTTATTACCACCTGCTTCCG+GGG + chr8.2:28151407-28151426 None:intergenic 45.0%
! AATCCGAGACTTTTGCTCGA+TGG - chr8.2:28150523-28150542 MS.gene012002:CDS 45.0%
! ATCCGAGACTTTTGCTCGAT+GGG - chr8.2:28150524-28150543 MS.gene012002:CDS 45.0%
! TACTGAGTCTTGGGCTTTTC+AGG + chr8.2:28152165-28152184 None:intergenic 45.0%
!! GGCCTTAGGCTTTTGTTTCT+TGG + chr8.2:28151203-28151222 None:intergenic 45.0%
!! GGTCTTGGGCTTTTGTTTCT+TGG + chr8.2:28151821-28151840 None:intergenic 45.0%
!!! TTTTGAAGCCTGATCAGCAG+CGG + chr8.2:28150906-28150925 None:intergenic 45.0%
AAAGAAAAGCCCAAGGCCTC+GGG - chr8.2:28151997-28152016 MS.gene012002:intron 50.0%
AGCCCATCGAGCAAAAGTCT+CGG + chr8.2:28150529-28150548 None:intergenic 50.0%
CACGGAAAAGCTAAAGCAGG+CGG - chr8.2:28151346-28151365 MS.gene012002:CDS 50.0%
CCTCAAAGGCCACAGATTCA+GGG - chr8.2:28150780-28150799 MS.gene012002:CDS 50.0%
GAAACAAAAGCCCAAGGCCT+CGG - chr8.2:28151561-28151580 MS.gene012002:CDS 50.0%
GAAACAAAAGCCGAAGGCCT+CGG - chr8.2:28151474-28151493 MS.gene012002:CDS 50.0%
GAAACGAAATCCAAAGGCCC+CGG - chr8.2:28151387-28151406 MS.gene012002:CDS 50.0%
GAAAGAAAAGCCCAAGGCCT+CGG - chr8.2:28151996-28152015 MS.gene012002:intron 50.0%
GGCCTTAGGATTTCTGTGCT+TGG + chr8.2:28151908-28151927 None:intergenic 50.0%
GTTGTGTAGACCAGACGATG+TGG - chr8.2:28150449-28150468 MS.gene012002:CDS 50.0%
TTGATCTCCAGCTGCATCTG+AGG + chr8.2:28151668-28151687 None:intergenic 50.0%
TTTATCTCCAGCTGCATCCG+AGG + chr8.2:28151494-28151513 None:intergenic 50.0%
TTTATGCCCAGCTGCATCTG+AGG + chr8.2:28151755-28151774 None:intergenic 50.0%
! GCATTTTCGACCACATCGTC+TGG + chr8.2:28150462-28150481 None:intergenic 50.0%
! GGCCTTGGGCTTTTCTTTCT+TGG + chr8.2:28151995-28152014 None:intergenic 50.0%
!! GGCCTTCGGCTTTTGTTTCT+TGG + chr8.2:28151473-28151492 None:intergenic 50.0%
!! GGCCTTGGGCTTTTGTTTCT+TGG + chr8.2:28151560-28151579 None:intergenic 50.0%
AATCCTAAGGCCCCGGAAGT+AGG - chr8.2:28151916-28151935 MS.gene012002:intron 55.0%
AGCTGAAGCTGCTGCCTCAA+AGG - chr8.2:28150766-28150785 MS.gene012002:CDS 55.0%
CCAACTGCATCCGAGGTCTT+GGG + chr8.2:28151835-28151854 None:intergenic 55.0%
CCATATAGCCGCTGCTGATC+AGG - chr8.2:28150895-28150914 MS.gene012002:CDS 55.0%
CCCTGAATCTGTGGCCTTTG+AGG + chr8.2:28150783-28150802 None:intergenic 55.0%
CCTGATCAGCAGCGGCTATA+TGG + chr8.2:28150898-28150917 None:intergenic 55.0%
CTAAGGCCTCAGATGCAGCT+GGG - chr8.2:28151746-28151765 MS.gene012002:intron 55.0%
CTTATCTCCAACTGCACCCG+AGG + chr8.2:28152016-28152035 None:intergenic 55.0%
GCACAGAAATCCTAAGGCCC+CGG - chr8.2:28151909-28151928 MS.gene012002:intron 55.0%
GCCTCAAAGGCCACAGATTC+AGG - chr8.2:28150779-28150798 MS.gene012002:CDS 55.0%
GCTAAAGCAGGCGGTGCATA+TGG - chr8.2:28151355-28151374 MS.gene012002:CDS 55.0%
TCCAACTGCATCCGAGGTCT+TGG + chr8.2:28151836-28151855 None:intergenic 55.0%
AATCCAAAGGCCCCGGAAGC+AGG - chr8.2:28151394-28151413 MS.gene012002:CDS 60.0%
AATCCCAAGGCCCCGGAAGT+AGG - chr8.2:28151124-28151143 MS.gene012002:CDS 60.0%
CCAACTGCATCCGAGGCCTT+AGG + chr8.2:28151217-28151236 None:intergenic 60.0%
CCAACTGCATCGGAGGCCTT+GGG + chr8.2:28152096-28152115 None:intergenic 60.0%
CCCAAGACCTCGGATGCAGT+TGG - chr8.2:28151832-28151851 MS.gene012002:CDS 60.0%
CCTAAGGCCTCAGATGCAGC+TGG - chr8.2:28151745-28151764 MS.gene012002:intron 60.0%
CCTAAGGCCTCGGATGCAGT+TGG - chr8.2:28151214-28151233 MS.gene012002:CDS 60.0%
GCAACGAAATCCCAAGGCCC+CGG - chr8.2:28151117-28151136 MS.gene012002:CDS 60.0%
TCCAACTGCATCGGAGGCCT+TGG + chr8.2:28152097-28152116 None:intergenic 60.0%
! CCAGCTGCATCTGAGGCCTT+AGG + chr8.2:28151661-28151680 None:intergenic 60.0%
! CCAGCTGCATCTGAGGCCTT+GGG + chr8.2:28151661-28151680 None:intergenic 60.0%
! TCCAGCTGCATCTGAGGCCT+TGG + chr8.2:28151662-28151681 None:intergenic 60.0%
CCAACTGCACCCGAGGCCTT+GGG + chr8.2:28152009-28152028 None:intergenic 65.0%
CCACCTACTTCCGGGGCCTT+AGG + chr8.2:28151130-28151149 None:intergenic 65.0%
CCACCTACTTCCGGGGCCTT+GGG + chr8.2:28151130-28151149 None:intergenic 65.0%
CCAGCTGCATCCGAGGCCTT+CGG + chr8.2:28151487-28151506 None:intergenic 65.0%
CCAGCTGCATCCGAGGCCTT+GGG + chr8.2:28151487-28151506 None:intergenic 65.0%
CCCAAGGCCTCAGATGCAGC+TGG - chr8.2:28151658-28151677 MS.gene012002:intron 65.0%
CCCAAGGCCTCCGATGCAGT+TGG - chr8.2:28152093-28152112 MS.gene012002:CDS 65.0%
CCTAAGGCCCCGGAAGTAGG+TGG - chr8.2:28151919-28151938 MS.gene012002:intron 65.0%
TCCAACTGCACCCGAGGCCT+TGG + chr8.2:28152010-28152029 None:intergenic 65.0%
TCCACCTACTTCCGGGGCCT+TGG + chr8.2:28151131-28151150 None:intergenic 65.0%
TCCAGCTGCATCCGAGGCCT+TGG + chr8.2:28151488-28151507 None:intergenic 65.0%
CCAAAGGCCCCGGAAGCAGG+TGG - chr8.2:28151397-28151416 MS.gene012002:CDS 70.0%
CCACCTGCTTCCGGGGCCTT+TGG + chr8.2:28151400-28151419 None:intergenic 70.0%
CCCAAGGCCCCGGAAGTAGG+TGG - chr8.2:28151127-28151146 MS.gene012002:CDS 70.0%
CCCAAGGCCTCGGATGCAGC+TGG - chr8.2:28151571-28151590 MS.gene012002:CDS 70.0%
CCCAAGGCCTCGGGTGCAGT+TGG - chr8.2:28152006-28152025 MS.gene012002:intron 70.0%
CCGAAGGCCTCGGATGCAGC+TGG - chr8.2:28151484-28151503 MS.gene012002:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 28150390 28152185 28150390 ID=MS.gene012002
chr8.2 mRNA 28150390 28152185 28150390 ID=MS.gene012002.t1;Parent=MS.gene012002
chr8.2 exon 28152010 28152185 28152010 ID=MS.gene012002.t1.exon1;Parent=MS.gene012002.t1
chr8.2 CDS 28152010 28152185 28152010 ID=cds.MS.gene012002.t1;Parent=MS.gene012002.t1
chr8.2 exon 28151757 28151860 28151757 ID=MS.gene012002.t1.exon2;Parent=MS.gene012002.t1
chr8.2 CDS 28151757 28151860 28151757 ID=cds.MS.gene012002.t1;Parent=MS.gene012002.t1
chr8.2 exon 28150390 28151672 28150390 ID=MS.gene012002.t1.exon3;Parent=MS.gene012002.t1
chr8.2 CDS 28150390 28151672 28150390 ID=cds.MS.gene012002.t1;Parent=MS.gene012002.t1
Gene Sequence

>MS.gene012002

ATGAAGATACAAAATGCAAAATTTGTCTTGTTGGTTTTATGTCTTGCCGTATGTGTAGAGTTGTGTAGACCAGACGATGTGGTCGAAAATGCCAAAGAAAAAGCTGGAGAGGTAGTCGATGATGCCACTGAAAAATCCGAGACTTTTGCTCGATGGGCTTATGATAAGATTTCTGAGTAAGTACTGCTAATTCTCATAATTCTACACATCTTAATTTGAACAATAACAATATTACCTAGATTTCATGGTTTTCTTGTTCATAAAATTAGGCCAAACTTAAAAAGTTATCATTTCATTCATCATTGATATGCAATTGTTCTCATAGACATTTCGGCTCAAAAGAGGAAATTGAAATATCACAAAATGTAAAGTTACAAGCTGAAGCTGCTGCCTCAAAGGCCACAGATTCAGGGAAAAAATATGCAGCAGGTACATAGTTGTTCATTGACATTAACCCTTACTGGTATATATTAATTCAAATAAAGCTTACAATGTTTATCATTTTCCATATAGCCGCTGCTGATCAGGCTTCAAAAACGGCTTCCGATGCTAAAGAGAAAACAAAAGGAGCAGCTGATCAGGCTTCAAAAACGGCTTCCGATGCTAAAGAGAAAACAAAAGGAGCAGCTGATCAGGCTTCAAAAACGGCTTCCGATGCTAAAGAGAAAACAAAAGGAGCAGCTGAAGATGGAAAAGCTAAAGCAAGTAGTGCATATAGTGGAAACAAGCAACGAAATCCCAAGGCCCCGGAAGTAGGTGGAAATAAAGCTAATGTTGCTAAAGATAAAGAAAATAGTGCATCTGGTGAAGCCAAGAAACAAAAGCCTAAGGCCTCGGATGCAGTTGGAGATAAAGCTAATGTTGCTAAAGATAAAGAAAATAGCGCATCTGGTGAAGCCAAGAAACAAAAGCCTAAGGCCTCTGATGTTAAAGAGAAAGTAAAAGAAGCAGTTGAACACGGAAAAGCTAAAGCAGGCGGTGCATATGGTGCAGCCAAGAAACGAAATCCAAAGGCCCCGGAAGCAGGTGGTAATAAAGATAATGTTGCTAAAGATAAAGAAAATAGTGCATCCGGTGAAGCCAAGAAACAAAAGCCGAAGGCCTCGGATGCAGCTGGAGATAAAGCCAATGTTGCTAAAGATAAAGAAAATAGTGCATCCGGTGAAGCCAAGAAACAAAAGCCCAAGGCCTCGGATGCAGCTGGAGATAAAGCCAATGTTGCTAAAGATAAAGAAAATAGTGCATCCGGTGAAGCCAAGAAACAAAAGCCCAAGGCCTCAGATGCAGCTGGAGATCAAGCCAATAATGCTAAAGATAAAGAAAATAGTGCATCTGGGGAAGCCAAGAAACAAAAGCCTAAGGCCTCAGATGCAGCTGGGCATAAAGCCAATAATGCTAAAGATAAAGAAAATAATGCATCTGGTGAAGCCAAGAAACAAAAGCCCAAGACCTCGGATGCAGTTGGAGATAAAGCCAATGTTGCTAAAGATAAAGAAAATAGTGCAGCTGGTGGAACCAAGCACAGAAATCCTAAGGCCCCGGAAGTAGGTGGAAATAAAGCTAATGTTGCTAAAGATAAAGAAAATAATGCATCTAGTGAAGCCAAGAAAGAAAAGCCCAAGGCCTCGGGTGCAGTTGGAGATAAGACCAATGTTGCTAAAGATAAAGAAAGTGGTGCATCTAGTGAAGCCAAGAAAGAAAAGCCCAAGGCCTCCGATGCAGTTGGAGATAAAGCTAATGCTGCTAAAGATGCAACAAAGAAAACTGCAACTCCTGAAAAGCCCAAGACTCAGTAG
Protein sequence

>MS.gene012002.t1

MKIQNAKFVLLVLCLAVCVELCRPDDVVENAKEKAGEVVDDATEKSETFARWAYDKISEHFGSKEEIEISQNVKLQAEAAASKATDSGKKYAAAAADQASKTASDAKEKTKGAADQASKTASDAKEKTKGAADQASKTASDAKEKTKGAAEDGKAKASSAYSGNKQRNPKAPEVGGNKANVAKDKENSASGEAKKQKPKASDAVGDKANVAKDKENSASGEAKKQKPKASDVKEKVKEAVEHGKAKAGGAYGAAKKRNPKAPEAGGNKDNVAKDKENSASGEAKKQKPKASDAAGDKANVAKDKENSASGEAKKQKPKASDAAGDKANVAKDKENSASGEAKKQKPKASDAAGDQANNAKDKENSASGEAKKQKPKASDAAGHKANNAKDKENNASGEAKKQKPKTSDAVGDKANVAKDKENSAAGGTKHRNPKAPEVGGNKANVAKDKENNASSEAKKEKPKASGAVGDKTNVAKDKESGASSEAKKEKPKASDAVGDKANAAKDATKKTATPEKPKTQ