AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45489

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45489.t1 MTR_2g096760 98.194 443 8 0 1 443 1 443 0.0 905
MS.gene45489.t1 MTR_4g063830 74.273 447 109 5 1 443 1 445 0.0 684
MS.gene45489.t1 MTR_4g021880 61.827 427 148 7 18 438 104 521 0.0 522
MS.gene45489.t1 MTR_4g021880 64.610 308 104 3 18 324 104 407 4.90e-140 407
MS.gene45489.t1 MTR_0020s0130 30.752 452 233 12 1 403 1 421 1.48e-44 162
MS.gene45489.t1 MTR_4g129470 32.010 403 214 12 1 376 7 376 2.75e-41 154
MS.gene45489.t1 MTR_1g100797 31.204 407 218 11 1 376 1 376 3.31e-41 153
MS.gene45489.t1 MTR_4g129470 31.562 320 160 11 84 376 1 288 3.27e-26 110
MS.gene45489.t1 MTR_1g100797 30.769 299 146 10 109 376 4 272 3.59e-25 107
MS.gene45489.t1 MTR_1g115575 31.220 205 122 4 14 215 134 322 1.49e-18 88.6
MS.gene45489.t1 MTR_7g117620 29.661 236 125 8 15 219 85 310 2.43e-17 84.7
MS.gene45489.t1 MTR_7g100390 31.429 245 131 9 5 219 41 278 3.39e-17 84.3
MS.gene45489.t1 MTR_2g033050 31.214 173 103 5 14 181 201 362 1.18e-15 79.0
MS.gene45489.t1 MTR_2g096190 29.796 245 133 9 5 218 58 294 5.45e-15 77.4
MS.gene45489.t1 MTR_1g089180 33.333 183 108 6 45 218 252 429 9.92e-15 76.3
MS.gene45489.t1 MTR_7g100430 30.332 211 125 5 11 215 120 314 7.59e-14 73.9
MS.gene45489.t1 MTR_4g062100 28.095 210 126 4 12 215 71 261 1.84e-13 72.8
MS.gene45489.t1 MTR_1g032100 26.471 238 142 9 11 232 53 273 2.62e-13 72.0
MS.gene45489.t1 MTR_7g115280 27.138 269 163 6 18 259 21 283 8.52e-13 70.5
MS.gene45489.t1 MTR_6g027840 25.974 231 140 4 25 240 141 355 3.33e-12 68.9
MS.gene45489.t1 MTR_6g027840 29.032 217 139 4 47 253 244 455 3.42e-12 68.6
MS.gene45489.t1 MTR_5g085830 33.742 163 98 6 18 177 282 437 7.75e-12 67.8
MS.gene45489.t1 MTR_5g023090 29.240 171 104 3 45 215 292 445 1.60e-11 66.6
MS.gene45489.t1 MTR_1g112830 26.471 238 150 8 15 247 139 356 4.65e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45489.t1 AT2G28840 67.706 449 132 4 1 438 1 447 0.0 626
MS.gene45489.t1 AT2G28840 71.053 380 97 4 70 438 56 433 0.0 560
MS.gene45489.t1 AT5G07270 31.658 398 215 10 1 373 1 366 3.96e-41 153
MS.gene45489.t1 AT5G57740 31.188 404 213 10 1 373 7 376 6.75e-39 147
MS.gene45489.t1 AT5G02620 29.021 286 164 13 12 277 57 323 3.42e-19 90.5
MS.gene45489.t1 AT5G02620 29.021 286 164 13 12 277 57 323 3.42e-19 90.5
MS.gene45489.t1 AT5G02620 29.021 286 164 13 12 277 57 323 3.42e-19 90.5
MS.gene45489.t1 AT5G02620 30.097 206 119 8 12 211 57 243 2.02e-17 85.1
MS.gene45489.t1 AT5G02620 30.097 206 119 8 12 211 57 243 2.02e-17 85.1
MS.gene45489.t1 AT3G04710 30.000 300 166 11 22 294 249 531 2.25e-17 85.1
MS.gene45489.t1 AT3G04710 31.154 260 146 8 22 254 25 278 2.36e-17 84.3
MS.gene45489.t1 AT3G12360 30.556 216 132 5 14 225 120 321 4.60e-17 84.0
MS.gene45489.t1 AT3G12360 30.556 216 132 5 14 225 132 333 4.66e-17 84.0
MS.gene45489.t1 AT5G60070 29.864 221 123 6 14 206 76 292 2.22e-16 81.6
MS.gene45489.t1 AT3G04710 31.154 260 145 9 22 254 25 277 3.98e-16 80.9
MS.gene45489.t1 AT1G07710 30.806 211 117 8 14 216 69 258 1.77e-15 79.0
MS.gene45489.t1 AT1G07710 30.806 211 117 8 14 216 69 258 1.77e-15 79.0
MS.gene45489.t1 AT2G31820 27.372 274 175 8 15 278 193 452 5.62e-14 74.7
MS.gene45489.t1 AT3G09550 29.064 203 127 5 15 215 154 341 2.08e-13 72.8
MS.gene45489.t1 AT3G09550 29.064 203 127 5 15 215 147 334 2.08e-13 72.8
MS.gene45489.t1 AT3G09550 29.064 203 127 5 15 215 147 334 2.08e-13 72.8
MS.gene45489.t1 AT5G20350 29.204 226 124 8 50 247 35 252 4.26e-13 71.6
MS.gene45489.t1 AT5G51160 29.139 151 92 4 37 180 34 176 3.23e-11 65.5

Find 92 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACACTATGCTGCTTATTA+TGG 0.234084 2.1:-6836794 MS.gene45489:CDS
CTAGTCATGTGGCTGCTTCT+TGG 0.245814 2.1:-6836730 MS.gene45489:intron
CAGAAGAAAGAATAGCTTTA+AGG 0.264068 2.1:+6836759 None:intergenic
ACTATGTTGCTTCGACAAAA+TGG 0.280496 2.1:+6835222 None:intergenic
TTGATGTTTGATACGGTTAA+TGG 0.291932 2.1:-6836827 MS.gene45489:CDS
TCTAACAAGGCTTTGGCTTC+CGG 0.299067 2.1:+6835787 None:intergenic
TACCGCTGTCGTTCAAATTT+CGG 0.312482 2.1:+6835103 None:intergenic
CTTGTTAGAACAAGCTTTGA+TGG 0.323868 2.1:-6835773 MS.gene45489:CDS
CGTATTCAGCGTGATTCATC+TGG 0.341209 2.1:-6836280 MS.gene45489:CDS
AAGTTGGGCGTCCGAAGTTC+AGG 0.350071 2.1:-6835042 MS.gene45489:CDS
CTTCATATTGCTGCTGCTAA+TGG 0.351267 2.1:-6837296 MS.gene45489:CDS
TGTGCTTCGACCGGTAGATA+TGG 0.358247 2.1:-6836487 MS.gene45489:CDS
AATAGAATATGTACACATTC+AGG 0.364281 2.1:+6836529 None:intergenic
AAGCAACATAGTTAGACTTA+TGG 0.364923 2.1:-6835211 MS.gene45489:CDS
TAGTGTGTCGTTCGGAAAGT+TGG 0.387276 2.1:-6835058 MS.gene45489:CDS
AGCTTGTTCTAACAAGGCTT+TGG 0.389126 2.1:+6835780 None:intergenic
CATCTGCTGAGCCTCTTGTT+TGG 0.394206 2.1:-6835843 MS.gene45489:CDS
CAATTTGAAGGTTACCTTGT+TGG 0.396080 2.1:+6837387 None:intergenic
GGGTGCGACGCCGTTACATT+TGG 0.413527 2.1:-6836569 MS.gene45489:CDS
ACAGAGTTGTTACAATTTGA+AGG 0.414832 2.1:+6837375 None:intergenic
CCCTTCATCTTGCTGCTAGA+GGG 0.415274 2.1:-6836348 MS.gene45489:CDS
TGATTGTATTCGTGAATTGT+TGG 0.428838 2.1:-6836317 MS.gene45489:CDS
AGTGTGTCGTTCGGAAAGTT+GGG 0.435757 2.1:-6835057 MS.gene45489:CDS
TTTACAGACTCCTCTTATGT+TGG 0.443125 2.1:-6836998 MS.gene45489:intron
CTTCGACAAAATGGACAAAC+TGG 0.445468 2.1:+6835231 None:intergenic
TGCATTGCAGCCAACATAAG+AGG 0.455233 2.1:+6836988 None:intergenic
CCCCTTCATCTTGCTGCTAG+AGG 0.458363 2.1:-6836349 MS.gene45489:CDS
ATTCATCAGTGAACTTAATC+CGG 0.460718 2.1:-6835806 MS.gene45489:CDS
CAGGAAGAGTTGCTGCTGAA+TGG 0.461974 2.1:-6835023 MS.gene45489:CDS
AAGGGAGAAAGATATATTGA+AGG 0.462497 2.1:-6835737 MS.gene45489:CDS
AGATGAAGGGGAGTACTTCC+AGG 0.465349 2.1:+6836361 None:intergenic
TGATGGATGCAAACAGAGAA+AGG 0.466607 2.1:-6835756 MS.gene45489:CDS
GTGCTTCGACCGGTAGATAT+GGG 0.467851 2.1:-6836486 MS.gene45489:intron
CGGTTTGTTGTAGCAACAAA+GGG 0.467861 2.1:+6835281 None:intergenic
CCCCTCTAGCAGCAAGATGA+AGG 0.471186 2.1:+6836347 None:intergenic
TTGGTTGTAGGGGATTTGTT+CGG 0.476243 2.1:-6836615 MS.gene45489:intron
GAGTTATAGAAGTAGTTGTC+GGG 0.479062 2.1:+6835256 None:intergenic
ATAGAAGTAGTTGTCGGGTT+CGG 0.479189 2.1:+6835261 None:intergenic
TATTCGTGAATTGTTGGCAT+GGG 0.499232 2.1:-6836311 MS.gene45489:CDS
TGTTTCATAGCAACCATGTA+TGG 0.499705 2.1:+6835901 None:intergenic
AGGGAGAAAGATATATTGAA+GGG 0.502605 2.1:-6835736 MS.gene45489:CDS
CTGATGAATTTCAGTGGAGA+TGG 0.506025 2.1:+6835820 None:intergenic
GGAGTTATAGAAGTAGTTGT+CGG 0.511884 2.1:+6835255 None:intergenic
GCTCTTGTTTGTGCTTCGAC+CGG 0.514971 2.1:-6836496 MS.gene45489:CDS
ATGCTGCATCTGCTTTGAGC+AGG 0.517837 2.1:-6835361 MS.gene45489:CDS
CATCAAAGCTTGTTCTAACA+AGG 0.519785 2.1:+6835774 None:intergenic
CTTATGTTGGCTGCAATGCA+TGG 0.523935 2.1:-6836985 MS.gene45489:CDS
ATGTGCATTGTGCACACATT+TGG 0.527928 2.1:+6835307 None:intergenic
CTTCATCTTGCTGCTAGAGG+GGG 0.528164 2.1:-6836346 MS.gene45489:CDS
ACAATTGAAGTTCAGAATTG+TGG 0.536648 2.1:-6835333 MS.gene45489:CDS
TGCAGAGGTAACAATGATCA+TGG 0.538975 2.1:-6837425 MS.gene45489:CDS
CCCTCTAGCAGCAAGATGAA+GGG 0.539664 2.1:+6836348 None:intergenic
CCTTCATCTTGCTGCTAGAG+GGG 0.539952 2.1:-6836347 MS.gene45489:CDS
TTCTGCTCAATCTAGTCATG+TGG 0.540502 2.1:-6836741 MS.gene45489:CDS
TGTGAATGTTAGAGATGGAA+AGG 0.540835 2.1:-6836590 MS.gene45489:CDS
ATGCAGGCGTATACCATACA+TGG 0.545210 2.1:-6835914 MS.gene45489:intron
GGATTATCTAGTGTGTCGTT+CGG 0.546546 2.1:-6835066 MS.gene45489:CDS
TCGGTTTGTTGTAGCAACAA+AGG 0.550398 2.1:+6835280 None:intergenic
CTCTTCATTGCTGTCCAACA+AGG 0.550538 2.1:-6837401 MS.gene45489:CDS
AGCGGTAGTAGCAGCTTCAA+AGG 0.552358 2.1:-6835087 MS.gene45489:CDS
CGGTTTGTGAATGTTAGAGA+TGG 0.552849 2.1:-6836595 MS.gene45489:CDS
GATGGATGCAAACAGAGAAA+GGG 0.553678 2.1:-6835755 MS.gene45489:CDS
CTCCCCGACAACATGGGTCA+AGG 0.556059 2.1:-6837455 None:intergenic
GTTCAAAGATAAACAAGTTG+AGG 0.560709 2.1:-6835131 MS.gene45489:CDS
ACAAGAGGCTCAGCAGATGT+AGG 0.576412 2.1:+6835847 None:intergenic
CAGCAACTCTTCCTGAACTT+CGG 0.576697 2.1:+6835031 None:intergenic
GCATGGAAGGATTGCATGTG+TGG 0.582025 2.1:-6836968 MS.gene45489:CDS
TGTTGGCTGCAATGCATGGA+AGG 0.583065 2.1:-6836981 MS.gene45489:CDS
GTATTCGTGAATTGTTGGCA+TGG 0.584740 2.1:-6836312 MS.gene45489:CDS
GTGAATGTTAGAGATGGAAA+GGG 0.588584 2.1:-6836589 MS.gene45489:CDS
AGTTCACTGATGAATTTCAG+TGG 0.597323 2.1:+6835814 None:intergenic
TCTACACAATCTGATTGTGA+TGG 0.598122 2.1:+6835691 None:intergenic
GTGGAGAAGCTACTTGAAGC+TGG 0.601028 2.1:-6836949 MS.gene45489:CDS
TTCATCTTGCTGCTAGAGGG+GGG 0.602142 2.1:-6836345 MS.gene45489:CDS
ATTTGGCATCTCGACAAAGA+CGG 0.606723 2.1:-6836552 MS.gene45489:CDS
AGTGGAGATGGCCAAACAAG+AGG 0.607832 2.1:+6835832 None:intergenic
AGATCAGTACCCATATCTAC+CGG 0.613771 2.1:+6836477 None:intergenic
AGCAGATGTAGGATTTAGCA+AGG 0.613787 2.1:+6835858 None:intergenic
GTATTCAGCGTGATTCATCT+GGG 0.618936 2.1:-6836279 MS.gene45489:intron
TGTCGAGATGCCAAATGTAA+CGG 0.619258 2.1:+6836559 None:intergenic
CCTCTAGCAGCAAGATGAAG+GGG 0.627465 2.1:+6836349 None:intergenic
CAATCTGATTGTGATGGAGA+CGG 0.634456 2.1:+6835697 None:intergenic
CGACAAAATGGACAAACTGG+TGG 0.636725 2.1:+6835234 None:intergenic
TTAGCAGCAGCAATATGAAG+AGG 0.637344 2.1:+6837299 None:intergenic
GGTCAAGGTCTTAGTTGCAG+AGG 0.642603 2.1:-6837440 MS.gene45489:CDS
ATTCGTGAATTGTTGGCATG+GGG 0.650106 2.1:-6836310 MS.gene45489:CDS
GGGAGAAAGATATATTGAAG+GGG 0.658402 2.1:-6835735 MS.gene45489:CDS
TGCTGCTAATGGCCAGATCG+AGG 0.658793 2.1:-6837285 MS.gene45489:intron
CTCCGAAATTTGAACGACAG+CGG 0.698163 2.1:-6835105 MS.gene45489:CDS
GTACATATTCTATTAGACAG+TGG 0.720585 2.1:-6836520 MS.gene45489:CDS
GTTGCTATGAAACACAGACA+CGG 0.736330 2.1:-6835892 MS.gene45489:CDS
TGTAGATGACAATATCTCCG+AGG 0.741974 2.1:-6835674 MS.gene45489:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATGTTTTTGAAT+TGG - chr2.1:6835817-6835836 MS.gene45489:CDS 10.0%
!!! AATTATTCTGAAAAAGAAAA+AGG + chr2.1:6835752-6835771 None:intergenic 15.0%
!!! TATAATGCAAATTTTAAACT+TGG + chr2.1:6836999-6837018 None:intergenic 15.0%
!! AAATTCAGTTCAAATTCATT+TGG + chr2.1:6836912-6836931 None:intergenic 20.0%
!! ATAATTCATCTTCATTTATG+TGG - chr2.1:6836232-6836251 MS.gene45489:intron 20.0%
!! ATTGAAACTTCTCAAATTTA+AGG - chr2.1:6836390-6836409 MS.gene45489:intron 20.0%
!! TTATCATTTGTTTCAATCAT+AGG - chr2.1:6836952-6836971 MS.gene45489:CDS 20.0%
!!! AATTCTTTTTCCTTATTTTC+TGG - chr2.1:6835191-6835210 MS.gene45489:CDS 20.0%
!!! TGTTTTAAATCGAAAAAAAC+AGG - chr2.1:6835335-6835354 MS.gene45489:CDS 20.0%
!!! TTTTTTCGATTTAAAACATC+TGG + chr2.1:6835333-6835352 None:intergenic 20.0%
! AAAAAACACAATGCAAACTA+AGG + chr2.1:6835378-6835397 None:intergenic 25.0%
! AAATCGAAAAAAACAGGTAA+TGG - chr2.1:6835341-6835360 MS.gene45489:CDS 25.0%
! AATAGAATATGTACACATTC+AGG + chr2.1:6835925-6835944 None:intergenic 25.0%
! AATTGCAAAACACAAGAATT+TGG + chr2.1:6836840-6836859 None:intergenic 25.0%
! AGGGATAAAATAATTGATGA+GGG + chr2.1:6836491-6836510 None:intergenic 25.0%
! GTAAAAAGGGTTAATCAAAA+AGG + chr2.1:6835438-6835457 None:intergenic 25.0%
! TAGGGATAAAATAATTGATG+AGG + chr2.1:6836492-6836511 None:intergenic 25.0%
! TGTTAATCCATAGATGAATT+TGG - chr2.1:6835564-6835583 MS.gene45489:intron 25.0%
!! ATCAAACATCTAAGTCTTTT+AGG - chr2.1:6836308-6836327 MS.gene45489:CDS 25.0%
!! ATGGATTGTAGCATTTAATT+AGG - chr2.1:6836455-6836474 MS.gene45489:intron 25.0%
!! CAATTTTCCAAATTCATCTA+TGG + chr2.1:6835574-6835593 None:intergenic 25.0%
!!! AATGTTTTTGAATTGGTTGT+AGG - chr2.1:6835824-6835843 MS.gene45489:CDS 25.0%
!!! ATGTTTTTGAATTGGTTGTA+GGG - chr2.1:6835825-6835844 MS.gene45489:CDS 25.0%
!!! TCAGAATAATTCTTTTTTCC+TGG - chr2.1:6835761-6835780 MS.gene45489:CDS 25.0%
!!! TGAGAATGCTATTTCTTTTT+TGG + chr2.1:6837030-6837049 None:intergenic 25.0%
!!! TTAGCTGTTTTAAAGTTGAA+TGG - chr2.1:6836436-6836455 MS.gene45489:intron 25.0%
!!! TTAGTTTGCATTGTGTTTTT+TGG - chr2.1:6835377-6835396 MS.gene45489:CDS 25.0%
AAGAAATAGCATTCTCATTG+TGG - chr2.1:6837033-6837052 MS.gene45489:intron 30.0%
AAGCAACATAGTTAGACTTA+TGG - chr2.1:6837240-6837259 MS.gene45489:intron 30.0%
AAGGGAGAAAGATATATTGA+AGG - chr2.1:6836714-6836733 MS.gene45489:intron 30.0%
ACAATTGAAGTTCAGAATTG+TGG - chr2.1:6837118-6837137 MS.gene45489:CDS 30.0%
ACAGAGTTGTTACAATTTGA+AGG + chr2.1:6835079-6835098 None:intergenic 30.0%
ACCAAACAACATGAAAATCT+AGG + chr2.1:6836511-6836530 None:intergenic 30.0%
ACTGATCTCTCAATATTCTA+TGG - chr2.1:6835989-6836008 MS.gene45489:intron 30.0%
AGGGAGAAAGATATATTGAA+GGG - chr2.1:6836715-6836734 MS.gene45489:intron 30.0%
ATAAGAGGAGTCTGTAAAAA+GGG + chr2.1:6835451-6835470 None:intergenic 30.0%
ATTCATCAGTGAACTTAATC+CGG - chr2.1:6836645-6836664 MS.gene45489:intron 30.0%
CCAAACAACATGAAAATCTA+GGG + chr2.1:6836510-6836529 None:intergenic 30.0%
GAATTTGGAAAATTGATGTG+TGG - chr2.1:6835579-6835598 MS.gene45489:intron 30.0%
GGGATAAAATAATTGATGAG+GGG + chr2.1:6836490-6836509 None:intergenic 30.0%
GTACATATTCTATTAGACAG+TGG - chr2.1:6835931-6835950 MS.gene45489:intron 30.0%
GTTCAAAGATAAACAAGTTG+AGG - chr2.1:6837320-6837339 MS.gene45489:CDS 30.0%
TCTTCATTTATGTGGCTTAT+TGG - chr2.1:6836240-6836259 MS.gene45489:intron 30.0%
TGATTGTATTCGTGAATTGT+TGG - chr2.1:6836134-6836153 MS.gene45489:intron 30.0%
TGGAAACTATGAAAATCTTC+AGG - chr2.1:6835599-6835618 MS.gene45489:intron 30.0%
TGTGGAATATGATATTATGC+AGG - chr2.1:6837051-6837070 MS.gene45489:intron 30.0%
TTGATGTTTGATACGGTTAA+TGG - chr2.1:6835624-6835643 MS.gene45489:intron 30.0%
! CAGAAGAAAGAATAGCTTTA+AGG + chr2.1:6835695-6835714 None:intergenic 30.0%
! TTACACTATGCTGCTTATTA+TGG - chr2.1:6835657-6835676 MS.gene45489:intron 30.0%
!! TAGCTTTAAGGCAAGAAAAA+TGG + chr2.1:6835683-6835702 None:intergenic 30.0%
!! TCAGGTTTTGATGTTTGATA+CGG - chr2.1:6835617-6835636 MS.gene45489:intron 30.0%
!! TGTTTTTGAATTGGTTGTAG+GGG - chr2.1:6835826-6835845 MS.gene45489:CDS 30.0%
!! TTTTGTTTCAGATTCTGTCA+AGG - chr2.1:6835286-6835305 MS.gene45489:CDS 30.0%
!!! AACGATCAAAGAGAGTTTTT+TGG + chr2.1:6835127-6835146 None:intergenic 30.0%
!!! TTTTTTGGTGGAAAAGAGAA+GGG + chr2.1:6835112-6835131 None:intergenic 30.0%
AAAAAGAATTCACCTCGATC+TGG + chr2.1:6835181-6835200 None:intergenic 35.0%
AGCAGAAATGCCAGAAAATA+AGG + chr2.1:6835204-6835223 None:intergenic 35.0%
AGTTCACTGATGAATTTCAG+TGG + chr2.1:6836640-6836659 None:intergenic 35.0%
ATCAAAGTCAAAGTCAATCC+AGG + chr2.1:6835782-6835801 None:intergenic 35.0%
CAAAAGGAGTCAAATTACCT+CGG + chr2.1:6836797-6836816 None:intergenic 35.0%
CAATTTGAAGGTTACCTTGT+TGG + chr2.1:6835067-6835086 None:intergenic 35.0%
CATAAGAGGAGTCTGTAAAA+AGG + chr2.1:6835452-6835471 None:intergenic 35.0%
GAGTTATAGAAGTAGTTGTC+GGG + chr2.1:6837198-6837217 None:intergenic 35.0%
GGAGTTATAGAAGTAGTTGT+CGG + chr2.1:6837199-6837218 None:intergenic 35.0%
GGCTGAGAGATTTGATTATT+TGG - chr2.1:6836973-6836992 MS.gene45489:CDS 35.0%
GGGAGAAAGATATATTGAAG+GGG - chr2.1:6836716-6836735 MS.gene45489:intron 35.0%
GTGAATGTTAGAGATGGAAA+GGG - chr2.1:6835862-6835881 MS.gene45489:CDS 35.0%
TATTCGTGAATTGTTGGCAT+GGG - chr2.1:6836140-6836159 MS.gene45489:intron 35.0%
TCTACACAATCTGATTGTGA+TGG + chr2.1:6836763-6836782 None:intergenic 35.0%
TGTGAATGTTAGAGATGGAA+AGG - chr2.1:6835861-6835880 MS.gene45489:CDS 35.0%
TGTTTCATAGCAACCATGTA+TGG + chr2.1:6836553-6836572 None:intergenic 35.0%
TTTACAGACTCCTCTTATGT+TGG - chr2.1:6835453-6835472 MS.gene45489:intron 35.0%
! AAGCTGGTGCTAATGTAATT+TGG - chr2.1:6835518-6835537 MS.gene45489:intron 35.0%
! ACTATGTTGCTTCGACAAAA+TGG + chr2.1:6837232-6837251 None:intergenic 35.0%
! ATTCTGTCAAGGCTTTTACA+TGG - chr2.1:6835297-6835316 MS.gene45489:CDS 35.0%
! CATCAAAGCTTGTTCTAACA+AGG + chr2.1:6836680-6836699 None:intergenic 35.0%
! CCCTAGATTTTCATGTTGTT+TGG - chr2.1:6836507-6836526 MS.gene45489:CDS 35.0%
! CGAAAAAAACAGGTAATGGT+TGG - chr2.1:6835345-6835364 MS.gene45489:CDS 35.0%
! CTTGTTAGAACAAGCTTTGA+TGG - chr2.1:6836678-6836697 MS.gene45489:intron 35.0%
! TTGAAATTTTGCAGCTATCC+TGG - chr2.1:6836072-6836091 MS.gene45489:intron 35.0%
!! GTGGCTTATTGGTTTGTATA+TGG - chr2.1:6836251-6836270 MS.gene45489:intron 35.0%
!!! CATTGTGTTTTTTGGCATGT+TGG - chr2.1:6835385-6835404 MS.gene45489:intron 35.0%
!!! GATCAAAGAGAGTTTTTTGG+TGG + chr2.1:6835124-6835143 None:intergenic 35.0%
!!! GTTTTTTGGTGGAAAAGAGA+AGG + chr2.1:6835113-6835132 None:intergenic 35.0%
AGATCAGTACCCATATCTAC+CGG + chr2.1:6835977-6835996 None:intergenic 40.0%
AGCAGATGTAGGATTTAGCA+AGG + chr2.1:6836596-6836615 None:intergenic 40.0%
ATAGAAGTAGTTGTCGGGTT+CGG + chr2.1:6837193-6837212 None:intergenic 40.0%
ATGTGCATTGTGCACACATT+TGG + chr2.1:6837147-6837166 None:intergenic 40.0%
ATTCGTGAATTGTTGGCATG+GGG - chr2.1:6836141-6836160 MS.gene45489:intron 40.0%
ATTTGGCATCTCGACAAAGA+CGG - chr2.1:6835899-6835918 MS.gene45489:CDS 40.0%
CGGTTTGTGAATGTTAGAGA+TGG - chr2.1:6835856-6835875 MS.gene45489:CDS 40.0%
CTGATGAATTTCAGTGGAGA+TGG + chr2.1:6836634-6836653 None:intergenic 40.0%
CTTCATATTGCTGCTGCTAA+TGG - chr2.1:6835155-6835174 MS.gene45489:CDS 40.0%
CTTCGACAAAATGGACAAAC+TGG + chr2.1:6837223-6837242 None:intergenic 40.0%
GATGGATGCAAACAGAGAAA+GGG - chr2.1:6836696-6836715 MS.gene45489:intron 40.0%
GTATTCAGCGTGATTCATCT+GGG - chr2.1:6836172-6836191 MS.gene45489:intron 40.0%
GTATTCGTGAATTGTTGGCA+TGG - chr2.1:6836139-6836158 MS.gene45489:intron 40.0%
GTTGCTATGAAACACAGACA+CGG - chr2.1:6836559-6836578 MS.gene45489:CDS 40.0%
TACCGCTGTCGTTCAAATTT+CGG + chr2.1:6837351-6837370 None:intergenic 40.0%
TGCAGAGGTAACAATGATCA+TGG - chr2.1:6835026-6835045 MS.gene45489:CDS 40.0%
TGTAGATGACAATATCTCCG+AGG - chr2.1:6836777-6836796 MS.gene45489:CDS 40.0%
TGTCGAGATGCCAAATGTAA+CGG + chr2.1:6835895-6835914 None:intergenic 40.0%
TTAGCAGCAGCAATATGAAG+AGG + chr2.1:6835155-6835174 None:intergenic 40.0%
TTCTGCTCAATCTAGTCATG+TGG - chr2.1:6835710-6835729 MS.gene45489:CDS 40.0%
! AGCTTGTTCTAACAAGGCTT+TGG + chr2.1:6836674-6836693 None:intergenic 40.0%
! CAATCTGATTGTGATGGAGA+CGG + chr2.1:6836757-6836776 None:intergenic 40.0%
! GGATTATCTAGTGTGTCGTT+CGG - chr2.1:6837385-6837404 MS.gene45489:CDS 40.0%
! TGATGGATGCAAACAGAGAA+AGG - chr2.1:6836695-6836714 MS.gene45489:intron 40.0%
! TTGGTTGTAGGGGATTTGTT+CGG - chr2.1:6835836-6835855 MS.gene45489:CDS 40.0%
!! CGGTTTGTTGTAGCAACAAA+GGG + chr2.1:6837173-6837192 None:intergenic 40.0%
!! TCGGTTTGTTGTAGCAACAA+AGG + chr2.1:6837174-6837193 None:intergenic 40.0%
ATGCAGGCGTATACCATACA+TGG - chr2.1:6836537-6836556 MS.gene45489:CDS 45.0%
CAGCAACTCTTCCTGAACTT+CGG + chr2.1:6837423-6837442 None:intergenic 45.0%
CGACAAAATGGACAAACTGG+TGG + chr2.1:6837220-6837239 None:intergenic 45.0%
CGTATTCAGCGTGATTCATC+TGG - chr2.1:6836171-6836190 MS.gene45489:intron 45.0%
CTCCGAAATTTGAACGACAG+CGG - chr2.1:6837346-6837365 MS.gene45489:CDS 45.0%
CTCTTCATTGCTGTCCAACA+AGG - chr2.1:6835050-6835069 MS.gene45489:CDS 45.0%
TGCATTGCAGCCAACATAAG+AGG + chr2.1:6835466-6835485 None:intergenic 45.0%
! AGTGTGTCGTTCGGAAAGTT+GGG - chr2.1:6837394-6837413 MS.gene45489:CDS 45.0%
! CTTATGTTGGCTGCAATGCA+TGG - chr2.1:6835466-6835485 MS.gene45489:intron 45.0%
! TAGTGTGTCGTTCGGAAAGT+TGG - chr2.1:6837393-6837412 MS.gene45489:CDS 45.0%
! TCTAACAAGGCTTTGGCTTC+CGG + chr2.1:6836667-6836686 None:intergenic 45.0%
!! GTTGTTTGGTGCGTTTATGC+AGG - chr2.1:6836521-6836540 MS.gene45489:CDS 45.0%
ACAAGAGGCTCAGCAGATGT+AGG + chr2.1:6836607-6836626 None:intergenic 50.0%
AGCGGTAGTAGCAGCTTCAA+AGG - chr2.1:6837364-6837383 MS.gene45489:CDS 50.0%
AGTGGAGATGGCCAAACAAG+AGG + chr2.1:6836622-6836641 None:intergenic 50.0%
CAGCGTGATTCATCTGGGTA+TGG - chr2.1:6836177-6836196 MS.gene45489:intron 50.0%
CAGGAAGAGTTGCTGCTGAA+TGG - chr2.1:6837428-6837447 MS.gene45489:CDS 50.0%
CATCTGCTGAGCCTCTTGTT+TGG - chr2.1:6836608-6836627 MS.gene45489:CDS 50.0%
CCCTCTAGCAGCAAGATGAA+GGG + chr2.1:6836106-6836125 None:intergenic 50.0%
CCCTTCATCTTGCTGCTAGA+GGG - chr2.1:6836103-6836122 MS.gene45489:intron 50.0%
CCTCTAGCAGCAAGATGAAG+GGG + chr2.1:6836105-6836124 None:intergenic 50.0%
CCTTCATCTTGCTGCTAGAG+GGG - chr2.1:6836104-6836123 MS.gene45489:intron 50.0%
CTAGTCATGTGGCTGCTTCT+TGG - chr2.1:6835721-6835740 MS.gene45489:CDS 50.0%
CTTCATCTTGCTGCTAGAGG+GGG - chr2.1:6836105-6836124 MS.gene45489:intron 50.0%
GCATGGAAGGATTGCATGTG+TGG - chr2.1:6835483-6835502 MS.gene45489:intron 50.0%
GGTCAAGGTCTTAGTTGCAG+AGG - chr2.1:6835011-6835030 MS.gene45489:CDS 50.0%
GTGCTTCGACCGGTAGATAT+GGG - chr2.1:6835965-6835984 MS.gene45489:intron 50.0%
GTGGAGAAGCTACTTGAAGC+TGG - chr2.1:6835502-6835521 MS.gene45489:intron 50.0%
TATGTGTGCACGCGGACAAA+AGG + chr2.1:6836813-6836832 None:intergenic 50.0%
TGTGCTTCGACCGGTAGATA+TGG - chr2.1:6835964-6835983 MS.gene45489:intron 50.0%
TTCATCTTGCTGCTAGAGGG+GGG - chr2.1:6836106-6836125 MS.gene45489:intron 50.0%
TTGGTGTGTATGTGTGCACG+CGG + chr2.1:6836821-6836840 None:intergenic 50.0%
! ATGCTGCATCTGCTTTGAGC+AGG - chr2.1:6837090-6837109 MS.gene45489:intron 50.0%
! GCTCTTGTTTGTGCTTCGAC+CGG - chr2.1:6835955-6835974 MS.gene45489:intron 50.0%
! TGTTGGCTGCAATGCATGGA+AGG - chr2.1:6835470-6835489 MS.gene45489:intron 50.0%
!! AGATGAAGGGGAGTACTTCC+AGG + chr2.1:6836093-6836112 None:intergenic 50.0%
AAGTTGGGCGTCCGAAGTTC+AGG - chr2.1:6837409-6837428 MS.gene45489:CDS 55.0%
CCCCTCTAGCAGCAAGATGA+AGG + chr2.1:6836107-6836126 None:intergenic 55.0%
CCCCTTCATCTTGCTGCTAG+AGG - chr2.1:6836102-6836121 MS.gene45489:intron 55.0%
TGCTGCTAATGGCCAGATCG+AGG - chr2.1:6835166-6835185 MS.gene45489:CDS 55.0%
GGGTGCGACGCCGTTACATT+TGG - chr2.1:6835882-6835901 MS.gene45489:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6835008 6837465 6835008 ID=MS.gene45489
chr2.1 mRNA 6835008 6837465 6835008 ID=MS.gene45489.t1;Parent=MS.gene45489
chr2.1 exon 6837286 6837465 6837286 ID=MS.gene45489.t1.exon1;Parent=MS.gene45489.t1
chr2.1 CDS 6837286 6837465 6837286 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
chr2.1 exon 6837117 6837176 6837117 ID=MS.gene45489.t1.exon2;Parent=MS.gene45489.t1
chr2.1 CDS 6837117 6837176 6837117 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
chr2.1 exon 6836942 6837013 6836942 ID=MS.gene45489.t1.exon3;Parent=MS.gene45489.t1
chr2.1 CDS 6836942 6837013 6836942 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
chr2.1 exon 6836731 6836852 6836731 ID=MS.gene45489.t1.exon4;Parent=MS.gene45489.t1
chr2.1 CDS 6836731 6836852 6836731 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
chr2.1 exon 6836487 6836627 6836487 ID=MS.gene45489.t1.exon5;Parent=MS.gene45489.t1
chr2.1 CDS 6836487 6836627 6836487 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
chr2.1 exon 6836280 6836387 6836280 ID=MS.gene45489.t1.exon6;Parent=MS.gene45489.t1
chr2.1 CDS 6836280 6836387 6836280 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
chr2.1 exon 6835675 6835930 6835675 ID=MS.gene45489.t1.exon7;Parent=MS.gene45489.t1
chr2.1 CDS 6835675 6835930 6835675 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
chr2.1 exon 6835008 6835400 6835008 ID=MS.gene45489.t1.exon8;Parent=MS.gene45489.t1
chr2.1 CDS 6835008 6835400 6835008 ID=cds.MS.gene45489.t1;Parent=MS.gene45489.t1
Gene Sequence

>MS.gene45489

ATGGGTCAAGGTCTTAGTTGCAGAGGTAACAATGATCATGGTCTCTTCATTGCTGTCCAACAAGGTAACCTTCAAATTGTAACAACTCTGTTACAACAAGACCCTTCTCTTTTCCACCAAAAAACTCTCTTTGATCGTTTTTCACCTCTTCATATTGCTGCTGCTAATGGCCAGATCGAGGTGAATTCTTTTTCCTTATTTTCTGGCATTTCTGCTAAGTTTAGTTTAAGAATTAATATTCTATTTTGTATTGTTTGTAACATTTCTGTTTTGTTTTGTTTTGTTTCAGATTCTGTCAAGGCTTTTACATGGATCTGTTAATCCAGATGTTTTAAATCGAAAAAAACAGGTAATGGTTGGTTATGTTCCTTAGTTTGCATTGTGTTTTTTGGCATGTTGGTTTTTGTTTTTATTGCTATAAGTGTTACCTTTTTGATTAACCCTTTTTACAGACTCCTCTTATGTTGGCTGCAATGCATGGAAGGATTGCATGTGTGGAGAAGCTACTTGAAGCTGGTGCTAATGTAATTTGGAAAATTTCATTTTTAGTTTCATTTGTTAATCCATAGATGAATTTGGAAAATTGATGTGTGGAAACTATGAAAATCTTCAGGTTTTGATGTTTGATACGGTTAATGGAAGAACTTGTTTACACTATGCTGCTTATTATGGCCATTTTTCTTGCCTTAAAGCTATTCTTTCTTCTGCTCAATCTAGTCATGTGGCTGCTTCTTGGTTTGTCCTTTTTCTTTTTCAGAATAATTCTTTTTTCCTGGATTGACTTTGACTTTGATGCTATGCTGTTGTTGTTTTTTAAATGTTTTTGAATTGGTTGTAGGGGATTTGTTCGGTTTGTGAATGTTAGAGATGGAAAGGGTGCGACGCCGTTACATTTGGCATCTCGACAAAGACGGCCTGAATGTGTACATATTCTATTAGACAGTGGTGCTCTTGTTTGTGCTTCGACCGGTAGATATGGGTACTGATCTCTCAATATTCTATGGTTAATTAAAATGACTTGAATCTTATGCATTCTTCTGTTTTGTGTACTAATGAATTGTTATTTGAAATTTTGCAGCTATCCTGGAAGTACTCCCCTTCATCTTGCTGCTAGAGGGGGGTCTCTTGATTGTATTCGTGAATTGTTGGCATGGGGCGCAGATCGTATTCAGCGTGATTCATCTGGGTATGGTTTGATTTTGAGACTTGTTAACATATCTAAACATAATTCATCTTCATTTATGTGGCTTATTGGTTTGTATATGGATTATTTATGTTAATGTGTTGAAGTTATTGTAATATCAAACATCTAAGTCTTTTAGGCAAATCTTTGATATGATAATTTCATAATTTGTTTTAATACTCATATCTAGCATTTTCTTATTGAAACTTCTCAAATTTAAGGAGAAACTTTCTTTATTTAACGATTTAGCTGTTTTAAAGTTGAATGGATTGTAGCATTTAATTAGGCATTTTTTTCCCCTCATCAATTATTTTATCCCTAGATTTTCATGTTGTTTGGTGCGTTTATGCAGGCGTATACCATACATGGTTGCTATGAAACACAGACACGGATCATGCACGTCCTTGCTAAATCCTACATCTGCTGAGCCTCTTGTTTGGCCATCTCCACTGAAATTCATCAGTGAACTTAATCCGGAAGCCAAAGCCTTGTTAGAACAAGCTTTGATGGATGCAAACAGAGAAAGGGAGAAAGATATATTGAAGGGGAAATTTTACTCTCTTCCGTCTCCATCACAATCAGATTGTGTAGATGACAATATCTCCGAGGTAATTTGACTCCTTTTGTCCGCGTGCACACATACACACCAAATTCTTGTGTTTTGCAATTGAATTAATCATAATGCTGAAATGTTGCTTATTTGTTATGTGTATACAAACCAAATGAATTTGAACTGAATTTTTGTGATATGCTATCTGAATTTATCATTTGTTTCAATCATAGGCTGAGAGATTTGATTATTTGGCCAAGTTTAAAATTTGCATTATAAATGTGATCCAAAAAAGAAATAGCATTCTCATTGTGGAATATGATATTATGCAGGTCAGTGAGTCAGAATTATGCTGCATCTGCTTTGAGCAGGTATGCACAATTGAAGTTCAGAATTGTGGTCACCAAATGTGTGCACAATGCACATTATCCCTTTGTTGCTACAACAAACCGAACCCGACAACTACTTCTATAACTCCACCAGTTTGTCCATTTTGTCGAAGCAACATAGTTAGACTTATGGTTGTCATGAAAATTGAAAATCACGACGAAACTGATCAAGACAACGTTGATATCAATTGTTCAAAGATAAACAAGTTGAGGAAACTCCGAAATTTGAACGACAGCGGTAGTAGCAGCTTCAAAGGATTATCTAGTGTGTCGTTCGGAAAGTTGGGCGTCCGAAGTTCAGGAAGAGTTGCTGCTGAATGGATTGATAAAGAATGA
Protein sequence

>MS.gene45489.t1

MGQGLSCRGNNDHGLFIAVQQGNLQIVTTLLQQDPSLFHQKTLFDRFSPLHIAAANGQIEILSRLLHGSVNPDVLNRKKQTPLMLAAMHGRIACVEKLLEAGANVLMFDTVNGRTCLHYAAYYGHFSCLKAILSSAQSSHVAASWGFVRFVNVRDGKGATPLHLASRQRRPECVHILLDSGALVCASTGRYGYPGSTPLHLAARGGSLDCIRELLAWGADRIQRDSSGRIPYMVAMKHRHGSCTSLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKDILKGKFYSLPSPSQSDCVDDNISEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLSLCCYNKPNPTTTSITPPVCPFCRSNIVRLMVVMKIENHDETDQDNVDINCSKINKLRKLRNLNDSGSSSFKGLSSVSFGKLGVRSSGRVAAEWIDKE