AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012188

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012188.t1 MTR_4g124910 95.257 253 12 0 1 253 1 253 1.37e-174 481
MS.gene012188.t1 MTR_2g043230 76.378 254 59 1 1 253 1 254 6.61e-142 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012188.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene012188.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene012188.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene012188.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382

Find 63 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTCCCTGCATATT+TGG 0.259970 8.1:-7147123 None:intergenic
AACTGTATTCCCGGGTGAAA+TGG 0.321202 8.1:-7147093 None:intergenic
CCTCGTAACAATGCTAGAAT+TGG 0.335567 8.1:+7145212 MS.gene012188:CDS
TTCCCGGGTGAAATGGATAA+TGG 0.363835 8.1:-7147086 None:intergenic
TTTAAGATCTTTGACCTCTT+CGG 0.402758 8.1:-7146350 None:intergenic
AGGAACCTTTCTTCCTTTGA+AGG 0.413360 8.1:+7145164 MS.gene012188:CDS
GGAGTACAAAACTGTATTCC+CGG 0.420138 8.1:-7147102 None:intergenic
TATCAAGACTCTGTCATTCA+AGG 0.421253 8.1:-7146374 None:intergenic
CCTTCGTCATCCACAGGCCC+TGG 0.444066 8.1:-7147053 None:intergenic
GGCTTTGATTGAGCAGTTGA+TGG 0.449739 8.1:-7146063 None:intergenic
CTGTTGCCTTCGTCATCCAC+AGG 0.452383 8.1:-7147059 None:intergenic
CAGGTGATAGCTGTTGGTCC+AGG 0.460455 8.1:+7147035 MS.gene012188:intron
GAATGACAGAGTCTTGATAA+AGG 0.473936 8.1:+7146378 MS.gene012188:CDS
GCAATCCTTCAAAGGAAGAA+AGG 0.496887 8.1:-7145169 None:intergenic
GCCAATGGATGGCTTATCCT+TGG 0.505865 8.1:-7146612 None:intergenic
AATGACTTCAAAGGCAAAGA+TGG 0.508584 8.1:+7147137 MS.gene012188:CDS
TGCTGGTGGTTTGTTGCTCA+CGG 0.524264 8.1:+7146583 MS.gene012188:CDS
ATCAAGACTCTGTCATTCAA+GGG 0.529761 8.1:-7146373 None:intergenic
CTGCTCAATCAAAGCCTCAA+GGG 0.533192 8.1:+7146070 MS.gene012188:CDS
GCCACTAGGTGATAGAGTAC+TGG 0.539283 8.1:+7145993 MS.gene012188:CDS
GTTGGAGACGGAAAGACAGT+TGG 0.541212 8.1:+7146108 MS.gene012188:CDS
AAGCTTACCGTGCCAATGGA+TGG 0.542126 8.1:-7146623 None:intergenic
TTGGAGACGGAAAGACAGTT+GGG 0.547663 8.1:+7146109 MS.gene012188:CDS
AGAAAAGCTTACCGTGCCAA+TGG 0.548046 8.1:-7146627 None:intergenic
GGAACTGAAGTGGAGTTCAA+TGG 0.549387 8.1:+7146277 MS.gene012188:CDS
AGCTGTTGGTCCAGGGCCTG+TGG 0.552111 8.1:+7147043 MS.gene012188:CDS
GGAAGTTCGCAATCCTTCAA+AGG 0.561777 8.1:-7145177 None:intergenic
GCGGCTTTAACAACAATAGA+CGG 0.565089 8.1:-7145257 None:intergenic
GAGGTAGTTGCTGTTGGAGA+CGG 0.565613 8.1:+7146096 MS.gene012188:CDS
TTCAAAACATCTTATACTGA+AGG 0.568271 8.1:+7146300 MS.gene012188:CDS
CATACAACTGTCAAGCCACT+AGG 0.568378 8.1:+7145979 MS.gene012188:CDS
ACCAAGGATAAGCCATCCAT+TGG 0.568643 8.1:+7146611 MS.gene012188:CDS
TATGCAGGGAATGACTTCAA+AGG 0.569312 8.1:+7147128 MS.gene012188:CDS
TTTGAGAGCCTCAGATGTCA+TGG 0.571249 8.1:+7147175 MS.gene012188:CDS
GAGTACAAAACTGTATTCCC+GGG 0.572521 8.1:-7147101 None:intergenic
CTGAAGGATGATGACATCGT+TGG 0.572824 8.1:+7146316 MS.gene012188:CDS
TGCTCAATCAAAGCCTCAAG+GGG 0.578517 8.1:+7146071 MS.gene012188:CDS
AGGTGATAGCTGTTGGTCCA+GGG 0.579593 8.1:+7147036 MS.gene012188:intron
AAAGTATGCAGGAACTGAAG+TGG 0.581171 8.1:+7146267 MS.gene012188:CDS
ACTGCTCAATCAAAGCCTCA+AGG 0.582194 8.1:+7146069 MS.gene012188:CDS
GTTGTGTACTCAAAGTATGC+AGG 0.590902 8.1:+7146256 MS.gene012188:CDS
AAACCATTATCCATTTCACC+CGG 0.592297 8.1:+7147083 MS.gene012188:CDS
CGGCTTTAACAACAATAGAC+GGG 0.595648 8.1:-7145256 None:intergenic
GGATGCAGAAGAGAAAACTC+AGG 0.597980 8.1:+7146026 MS.gene012188:CDS
ACCAGTACTCTATCACCTAG+TGG 0.604909 8.1:-7145994 None:intergenic
GAATTGGTATTCTTACACAA+AGG 0.614844 8.1:+7145228 MS.gene012188:CDS
CCAGGGCCTGTGGATGACGA+AGG 0.620963 8.1:+7147053 MS.gene012188:CDS
AAAATAGCCAAAATTAAGAG+AGG 0.622578 8.1:-7147202 None:intergenic
CAAAGTGGACATTAGTGTGA+AGG 0.624864 8.1:+7146137 MS.gene012188:CDS
GTTGCTCACGGAAGCAACCA+AGG 0.626344 8.1:+7146595 MS.gene012188:CDS
GAGGATAGCCATGACATCTG+AGG 0.634831 8.1:-7147183 None:intergenic
CCAATTCTAGCATTGTTACG+AGG 0.641555 8.1:-7145212 None:intergenic
AACCATTATCCATTTCACCC+GGG 0.641591 8.1:+7147084 MS.gene012188:CDS
GTTACGAGGAAAATGAATTG+CGG 0.642882 8.1:-7145198 None:intergenic
GGATAAGCCATCCATTGGCA+CGG 0.647992 8.1:+7146616 MS.gene012188:CDS
CTGCTTCATCGATTTCTACG+AGG 0.656045 8.1:+7145144 MS.gene012188:CDS
TGGTATTCTTGAAACCGAAG+AGG 0.662324 8.1:+7146336 MS.gene012188:CDS
GACAGTTGGGAAGAACAAAG+TGG 0.672565 8.1:+7146122 MS.gene012188:CDS
GCTGCAGGTTGCAGAAGCTG+AGG 0.680718 8.1:+7146553 MS.gene012188:intron
GATGCAGAAGAGAAAACTCA+GGG 0.684794 8.1:+7146027 MS.gene012188:CDS
ATGTAACAGGTGATAGCTGT+TGG 0.691284 8.1:+7147029 MS.gene012188:intron
GCAGAAGAGAAAACTCAGGG+TGG 0.728959 8.1:+7146030 MS.gene012188:CDS
GCTCAATCAAAGCCTCAAGG+GGG 0.730531 8.1:+7146072 MS.gene012188:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAATAATACCT+TGG - chr8.1:7145297-7145316 None:intergenic 10.0%
!! AAAAATAAAAATAATACCTT+GGG - chr8.1:7145296-7145315 None:intergenic 10.0%
!!! AAGGTATTATTTTTATTTTT+TGG + chr8.1:7145296-7145315 MS.gene012188:intron 10.0%
!!! AGGTATTATTTTTATTTTTT+GGG + chr8.1:7145297-7145316 MS.gene012188:intron 10.0%
!!! TTTTCAAAAAATTAAAACAA+TGG + chr8.1:7146766-7146785 MS.gene012188:intron 10.0%
!! AAAATAAAAATAATACCTTG+GGG - chr8.1:7145295-7145314 None:intergenic 15.0%
!! CGAAAAATATTCATAAATAT+TGG - chr8.1:7145774-7145793 None:intergenic 15.0%
!! GTTAAGACAAATAATTAAAT+GGG - chr8.1:7146460-7146479 None:intergenic 15.0%
!! AAATAAAAATAATACCTTGG+GGG - chr8.1:7145294-7145313 None:intergenic 20.0%
!! AAGTATACTGTTTCAAAAAA+AGG - chr8.1:7146658-7146677 None:intergenic 20.0%
!! ACAAGATGAAATTACTAATA+AGG - chr8.1:7145957-7145976 None:intergenic 20.0%
!! CAAAAAATTAAAACAATGGA+TGG + chr8.1:7146770-7146789 MS.gene012188:intron 20.0%
!! GAAAAATATTCAAAAATGGT+GGG - chr8.1:7145748-7145767 None:intergenic 20.0%
!! GGTTAAGACAAATAATTAAA+TGG - chr8.1:7146461-7146480 None:intergenic 20.0%
!! GTCTGAAAAATATTCAAAAA+TGG - chr8.1:7145752-7145771 None:intergenic 20.0%
!! TGAAAAATATTCAAAAATGG+TGG - chr8.1:7145749-7145768 None:intergenic 20.0%
!! TTCAGACCAATAAAAAAAAA+GGG + chr8.1:7145673-7145692 MS.gene012188:intron 20.0%
!! TTTCAGACCAATAAAAAAAA+AGG + chr8.1:7145672-7145691 MS.gene012188:intron 20.0%
!!! ATTTTTATTTTTTGGGTCAT+GGG + chr8.1:7145304-7145323 MS.gene012188:intron 20.0%
!!! TACATTTTCTCTTATACTAA+GGG - chr8.1:7145565-7145584 None:intergenic 20.0%
!!! TATTTTTATTTTTTGGGTCA+TGG + chr8.1:7145303-7145322 MS.gene012188:intron 20.0%
! AAACATTAGAAATAATCCCA+TGG - chr8.1:7145899-7145918 None:intergenic 25.0%
! AACATTAGAAATAATCCCAT+GGG - chr8.1:7145898-7145917 None:intergenic 25.0%
! TAACACCTTAATGCAAAATA+TGG - chr8.1:7146482-7146501 None:intergenic 25.0%
! TGTAATGTATTTCTCTTTAC+AGG + chr8.1:7146222-7146241 MS.gene012188:intron 25.0%
! TTCAAAACATCTTATACTGA+AGG + chr8.1:7146300-7146319 MS.gene012188:CDS 25.0%
!! ACATTTTCTCTTATACTAAG+GGG - chr8.1:7145564-7145583 None:intergenic 25.0%
!! CTTAACCATATTTTGCATTA+AGG + chr8.1:7146474-7146493 MS.gene012188:intron 25.0%
!! GTACATTTTCTCTTATACTA+AGG - chr8.1:7145566-7145585 None:intergenic 25.0%
!! TTTATTTATTGCTTTAGCTC+AGG + chr8.1:7146912-7146931 MS.gene012188:intron 25.0%
AATAAAAAAAAAGGGCAACC+CGG + chr8.1:7145681-7145700 MS.gene012188:intron 30.0%
AATTAAAACAATGGATGGTC+TGG + chr8.1:7146775-7146794 MS.gene012188:intron 30.0%
AGAATTGCAAGAATGTGATT+TGG + chr8.1:7146739-7146758 MS.gene012188:intron 30.0%
CCAAAATAAAAGAAAGACCA+AGG - chr8.1:7146197-7146216 None:intergenic 30.0%
GAATGGTTATTTACATACCT+AGG - chr8.1:7146997-7147016 None:intergenic 30.0%
GAATTGCAAGAATGTGATTT+GGG + chr8.1:7146740-7146759 MS.gene012188:intron 30.0%
GAATTGGTATTCTTACACAA+AGG + chr8.1:7145228-7145247 MS.gene012188:CDS 30.0%
GCAATGTTATATCGTATGAA+GGG + chr8.1:7146707-7146726 MS.gene012188:intron 30.0%
GTTGTGTTTATAAGCTATCT+TGG + chr8.1:7145416-7145435 MS.gene012188:intron 30.0%
TTGAAAGAGCTTATAGCTTA+TGG - chr8.1:7145483-7145502 None:intergenic 30.0%
! AATAACCATTCTACTCCTTT+TGG + chr8.1:7147006-7147025 MS.gene012188:intron 30.0%
! CATTAAGGTGTTACGTTTAA+AGG + chr8.1:7146489-7146508 MS.gene012188:intron 30.0%
! TGGGTTTTCTTTATTATCTG+CGG + chr8.1:7145323-7145342 MS.gene012188:intron 30.0%
! TTTAAGATCTTTGACCTCTT+CGG - chr8.1:7146353-7146372 None:intergenic 30.0%
! TTTTGTACTCCAAATATGCA+GGG + chr8.1:7147114-7147133 MS.gene012188:CDS 30.0%
!! CCTTGGTCTTTCTTTTATTT+TGG + chr8.1:7146194-7146213 MS.gene012188:intron 30.0%
!! TAGAGTACTGGTAAAAATCA+AGG + chr8.1:7146005-7146024 MS.gene012188:CDS 30.0%
!!! TTGTTTTGATCGAGTAGTTT+TGG + chr8.1:7146970-7146989 MS.gene012188:intron 30.0%
AAACCATTATCCATTTCACC+CGG + chr8.1:7147083-7147102 MS.gene012188:CDS 35.0%
AAAGAAAGACCAAGGCTTAA+AGG - chr8.1:7146189-7146208 None:intergenic 35.0%
AACACATTCTACCGTCTTAA+GGG - chr8.1:7146867-7146886 None:intergenic 35.0%
AATGACTTCAAAGGCAAAGA+TGG + chr8.1:7147137-7147156 MS.gene012188:CDS 35.0%
ACCTGCAGCATCATAATTAA+AGG - chr8.1:7146542-7146561 None:intergenic 35.0%
ACTAGCATTATCCCTTAAGA+CGG + chr8.1:7146853-7146872 MS.gene012188:intron 35.0%
ATCAAGACTCTGTCATTCAA+GGG - chr8.1:7146376-7146395 None:intergenic 35.0%
ATCTCATAATGCACTTGAGT+GGG - chr8.1:7145509-7145528 None:intergenic 35.0%
ATGTATTTCTCTTTACAGGC+AGG + chr8.1:7146226-7146245 MS.gene012188:intron 35.0%
GAATGACAGAGTCTTGATAA+AGG + chr8.1:7146378-7146397 MS.gene012188:CDS 35.0%
GGCAATGTTATATCGTATGA+AGG + chr8.1:7146706-7146725 MS.gene012188:intron 35.0%
GTTACGAGGAAAATGAATTG+CGG - chr8.1:7145201-7145220 None:intergenic 35.0%
TAAAGGATTCCATAAGCTAG+TGG - chr8.1:7146172-7146191 None:intergenic 35.0%
TACATCCAAAAGGAGTAGAA+TGG - chr8.1:7147014-7147033 None:intergenic 35.0%
TATCAAGACTCTGTCATTCA+AGG - chr8.1:7146377-7146396 None:intergenic 35.0%
TATCACCTGTTACATCCAAA+AGG - chr8.1:7147024-7147043 None:intergenic 35.0%
TATCTCATAATGCACTTGAG+TGG - chr8.1:7145510-7145529 None:intergenic 35.0%
TGTTATATCGTATGAAGGGA+AGG + chr8.1:7146711-7146730 MS.gene012188:intron 35.0%
TTATGGAATCCTTTAAGCCT+TGG + chr8.1:7146177-7146196 MS.gene012188:intron 35.0%
! AACACCACTCTTCTAAAAGA+GGG + chr8.1:7146685-7146704 MS.gene012188:intron 35.0%
! GTTTTGTACTCCAAATATGC+AGG + chr8.1:7147113-7147132 MS.gene012188:CDS 35.0%
! TAACACCACTCTTCTAAAAG+AGG + chr8.1:7146684-7146703 MS.gene012188:intron 35.0%
!!! GGGTTGCCCTTTTTTTTTAT+TGG - chr8.1:7145682-7145701 None:intergenic 35.0%
AAAGTATGCAGGAACTGAAG+TGG + chr8.1:7146267-7146286 MS.gene012188:CDS 40.0%
AACCATTATCCATTTCACCC+GGG + chr8.1:7147084-7147103 MS.gene012188:CDS 40.0%
ACAGAGTCTTGATAAAGGTG+TGG + chr8.1:7146383-7146402 MS.gene012188:intron 40.0%
AGAAATAATCCCATGGGACA+GGG - chr8.1:7145892-7145911 None:intergenic 40.0%
AGGAACCTTTCTTCCTTTGA+AGG + chr8.1:7145164-7145183 MS.gene012188:CDS 40.0%
ATGTAACAGGTGATAGCTGT+TGG + chr8.1:7147029-7147048 MS.gene012188:intron 40.0%
CAAAGTGGACATTAGTGTGA+AGG + chr8.1:7146137-7146156 MS.gene012188:CDS 40.0%
CAACACATTCTACCGTCTTA+AGG - chr8.1:7146868-7146887 None:intergenic 40.0%
CCAATTCTAGCATTGTTACG+AGG - chr8.1:7145215-7145234 None:intergenic 40.0%
CCTCGTAACAATGCTAGAAT+TGG + chr8.1:7145212-7145231 MS.gene012188:CDS 40.0%
GAAGTCATTCCCTGCATATT+TGG - chr8.1:7147126-7147145 None:intergenic 40.0%
GAGTACAAAACTGTATTCCC+GGG - chr8.1:7147104-7147123 None:intergenic 40.0%
GATGCAGAAGAGAAAACTCA+GGG + chr8.1:7146027-7146046 MS.gene012188:CDS 40.0%
GCAATCCTTCAAAGGAAGAA+AGG - chr8.1:7145172-7145191 None:intergenic 40.0%
GCCTTTAATTATGATGCTGC+AGG + chr8.1:7146538-7146557 MS.gene012188:intron 40.0%
GGAGTACAAAACTGTATTCC+CGG - chr8.1:7147105-7147124 None:intergenic 40.0%
GTTGTGTACTCAAAGTATGC+AGG + chr8.1:7146256-7146275 MS.gene012188:CDS 40.0%
TAGAAATAATCCCATGGGAC+AGG - chr8.1:7145893-7145912 None:intergenic 40.0%
TATGCAGGGAATGACTTCAA+AGG + chr8.1:7147128-7147147 MS.gene012188:CDS 40.0%
TGGTATTCTTGAAACCGAAG+AGG + chr8.1:7146336-7146355 MS.gene012188:CDS 40.0%
! ATTGCTTTAGCTCAGGTCAT+TGG + chr8.1:7146919-7146938 MS.gene012188:intron 40.0%
! CGGCTTTAACAACAATAGAC+GGG - chr8.1:7145259-7145278 None:intergenic 40.0%
! CTACTCCTTTTGGATGTAAC+AGG + chr8.1:7147016-7147035 MS.gene012188:intron 40.0%
! GCGGCTTTAACAACAATAGA+CGG - chr8.1:7145260-7145279 None:intergenic 40.0%
! TTTAGCTCAGGTCATTGGTT+TGG + chr8.1:7146924-7146943 MS.gene012188:intron 40.0%
!! ATTGCCCTCTTTTAGAAGAG+TGG - chr8.1:7146692-7146711 None:intergenic 40.0%
AACTGTATTCCCGGGTGAAA+TGG - chr8.1:7147096-7147115 None:intergenic 45.0%
ACCAAGGATAAGCCATCCAT+TGG + chr8.1:7146611-7146630 MS.gene012188:CDS 45.0%
ACCAGTACTCTATCACCTAG+TGG - chr8.1:7145997-7146016 None:intergenic 45.0%
ACTGCTCAATCAAAGCCTCA+AGG + chr8.1:7146069-7146088 MS.gene012188:CDS 45.0%
AGAAAAGCTTACCGTGCCAA+TGG - chr8.1:7146630-7146649 None:intergenic 45.0%
AGTGGACATTAGTGTGAAGG+TGG + chr8.1:7146140-7146159 MS.gene012188:intron 45.0%
ATACATAAGCCCTGTCCCAT+GGG + chr8.1:7145880-7145899 MS.gene012188:intron 45.0%
CATACAACTGTCAAGCCACT+AGG + chr8.1:7145979-7145998 MS.gene012188:CDS 45.0%
CTACAGCGAGAGATCAAAGT+AGG + chr8.1:7145614-7145633 MS.gene012188:intron 45.0%
CTGAAGGATGATGACATCGT+TGG + chr8.1:7146316-7146335 MS.gene012188:CDS 45.0%
CTGCTCAATCAAAGCCTCAA+GGG + chr8.1:7146070-7146089 MS.gene012188:CDS 45.0%
GAAGCTGAGGAAAAAACTGC+TGG + chr8.1:7146566-7146585 MS.gene012188:CDS 45.0%
GACAGTTGGGAAGAACAAAG+TGG + chr8.1:7146122-7146141 MS.gene012188:CDS 45.0%
GGAACTGAAGTGGAGTTCAA+TGG + chr8.1:7146277-7146296 MS.gene012188:CDS 45.0%
GGAAGTTCGCAATCCTTCAA+AGG - chr8.1:7145180-7145199 None:intergenic 45.0%
GGATGCAGAAGAGAAAACTC+AGG + chr8.1:7146026-7146045 MS.gene012188:CDS 45.0%
GGGATAATGCTAGTTGCTAC+AGG - chr8.1:7146847-7146866 None:intergenic 45.0%
GTGGACATTAGTGTGAAGGT+GGG + chr8.1:7146141-7146160 MS.gene012188:intron 45.0%
TATACATAAGCCCTGTCCCA+TGG + chr8.1:7145879-7145898 MS.gene012188:intron 45.0%
TGCTCAATCAAAGCCTCAAG+GGG + chr8.1:7146071-7146090 MS.gene012188:CDS 45.0%
TTCCCGGGTGAAATGGATAA+TGG - chr8.1:7147089-7147108 None:intergenic 45.0%
TTGGAGACGGAAAGACAGTT+GGG + chr8.1:7146109-7146128 MS.gene012188:CDS 45.0%
TTTGAGAGCCTCAGATGTCA+TGG + chr8.1:7147175-7147194 MS.gene012188:CDS 45.0%
! GGCTTTGATTGAGCAGTTGA+TGG - chr8.1:7146066-7146085 None:intergenic 45.0%
!! CTGCTTCATCGATTTCTACG+AGG + chr8.1:7145144-7145163 MS.gene012188:CDS 45.0%
!!! GATCGAGTAGTTTTGGTCCT+AGG + chr8.1:7146977-7146996 MS.gene012188:intron 45.0%
AAGCTTACCGTGCCAATGGA+TGG - chr8.1:7146626-7146645 None:intergenic 50.0%
AGGTGATAGCTGTTGGTCCA+GGG + chr8.1:7147036-7147055 MS.gene012188:intron 50.0%
GAGGATAGCCATGACATCTG+AGG - chr8.1:7147186-7147205 None:intergenic 50.0%
GCAGAAGAGAAAACTCAGGG+TGG + chr8.1:7146030-7146049 MS.gene012188:CDS 50.0%
GCCAATGGATGGCTTATCCT+TGG - chr8.1:7146615-7146634 None:intergenic 50.0%
GCCACTAGGTGATAGAGTAC+TGG + chr8.1:7145993-7146012 MS.gene012188:CDS 50.0%
GCTCAATCAAAGCCTCAAGG+GGG + chr8.1:7146072-7146091 MS.gene012188:CDS 50.0%
GCTGAGGAAAAAACTGCTGG+TGG + chr8.1:7146569-7146588 MS.gene012188:CDS 50.0%
GGATAAGCCATCCATTGGCA+CGG + chr8.1:7146616-7146635 MS.gene012188:CDS 50.0%
GGGCAGATCATCAAGACAAC+TGG - chr8.1:7146440-7146459 None:intergenic 50.0%
GTTGGAGACGGAAAGACAGT+TGG + chr8.1:7146108-7146127 MS.gene012188:CDS 50.0%
TACCTTGGGGGTAACAACAG+TGG - chr8.1:7145282-7145301 None:intergenic 50.0%
! GAGGTAGTTGCTGTTGGAGA+CGG + chr8.1:7146096-7146115 MS.gene012188:CDS 50.0%
! TGGGTGATGCCACTAGCTTA+TGG + chr8.1:7146160-7146179 MS.gene012188:intron 50.0%
!! TGCTGGTGGTTTGTTGCTCA+CGG + chr8.1:7146583-7146602 MS.gene012188:CDS 50.0%
ACTAAAGCTCCCGCATACGC+GGG + chr8.1:7145707-7145726 MS.gene012188:intron 55.0%
ATCAAAGCCTCAAGGGGGTG+AGG + chr8.1:7146077-7146096 MS.gene012188:CDS 55.0%
CACTAAAGCTCCCGCATACG+CGG + chr8.1:7145706-7145725 MS.gene012188:intron 55.0%
CAGGTGATAGCTGTTGGTCC+AGG + chr8.1:7147035-7147054 MS.gene012188:intron 55.0%
CTGTTGCCTTCGTCATCCAC+AGG - chr8.1:7147062-7147081 None:intergenic 55.0%
CTTGGGGGTAACAACAGTGG+CGG - chr8.1:7145279-7145298 None:intergenic 55.0%
GTTGCTCACGGAAGCAACCA+AGG + chr8.1:7146595-7146614 MS.gene012188:CDS 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr8.1:7145703-7145722 None:intergenic 55.0%
CGCCACTGTTGTTACCCCCA+AGG + chr8.1:7145277-7145296 MS.gene012188:CDS 60.0%
CTAAAGCTCCCGCATACGCG+GGG + chr8.1:7145708-7145727 MS.gene012188:intron 60.0%
GCAACTACCTCACCCCCTTG+AGG - chr8.1:7146087-7146106 None:intergenic 60.0%
GCTGCAGGTTGCAGAAGCTG+AGG + chr8.1:7146553-7146572 MS.gene012188:intron 60.0%
GGGGGTGAGGTAGTTGCTGT+TGG + chr8.1:7146090-7146109 MS.gene012188:CDS 60.0%
! AAATGGTGGGACCCCCTTCC+CGG - chr8.1:7145735-7145754 None:intergenic 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr8.1:7145702-7145721 None:intergenic 60.0%
AGCTGTTGGTCCAGGGCCTG+TGG + chr8.1:7147043-7147062 MS.gene012188:CDS 65.0%
CCAGGGCCTGTGGATGACGA+AGG + chr8.1:7147053-7147072 MS.gene012188:CDS 65.0%
CCTTCGTCATCCACAGGCCC+TGG - chr8.1:7147056-7147075 None:intergenic 65.0%
ATACGCGGGGTCCGGGAAGG+GGG + chr8.1:7145721-7145740 MS.gene012188:intron 70.0%
CATACGCGGGGTCCGGGAAG+GGG + chr8.1:7145720-7145739 MS.gene012188:intron 70.0%
CTTCCCGGACCCCGCGTATG+CGG - chr8.1:7145720-7145739 None:intergenic 70.0%
GCATACGCGGGGTCCGGGAA+GGG + chr8.1:7145719-7145738 MS.gene012188:intron 70.0%
TTCCCGGACCCCGCGTATGC+GGG - chr8.1:7145719-7145738 None:intergenic 70.0%
CGCATACGCGGGGTCCGGGA+AGG + chr8.1:7145718-7145737 MS.gene012188:intron 75.0%
CTCCCGCATACGCGGGGTCC+GGG + chr8.1:7145714-7145733 MS.gene012188:intron 75.0%
GCTCCCGCATACGCGGGGTC+CGG + chr8.1:7145713-7145732 MS.gene012188:intron 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 7145125 7147211 7145125 ID=MS.gene012188
chr8.1 mRNA 7145125 7147211 7145125 ID=MS.gene012188.t1;Parent=MS.gene012188
chr8.1 exon 7145125 7145298 7145125 ID=MS.gene012188.t1.exon1;Parent=MS.gene012188.t1
chr8.1 CDS 7145125 7145298 7145125 ID=cds.MS.gene012188.t1;Parent=MS.gene012188.t1
chr8.1 exon 7145979 7146158 7145979 ID=MS.gene012188.t1.exon2;Parent=MS.gene012188.t1
chr8.1 CDS 7145979 7146158 7145979 ID=cds.MS.gene012188.t1;Parent=MS.gene012188.t1
chr8.1 exon 7146244 7146399 7146244 ID=MS.gene012188.t1.exon3;Parent=MS.gene012188.t1
chr8.1 CDS 7146244 7146399 7146244 ID=cds.MS.gene012188.t1;Parent=MS.gene012188.t1
chr8.1 exon 7146560 7146637 7146560 ID=MS.gene012188.t1.exon4;Parent=MS.gene012188.t1
chr8.1 CDS 7146560 7146637 7146560 ID=cds.MS.gene012188.t1;Parent=MS.gene012188.t1
chr8.1 exon 7147038 7147211 7147038 ID=MS.gene012188.t1.exon5;Parent=MS.gene012188.t1
chr8.1 CDS 7147038 7147211 7147038 ID=cds.MS.gene012188.t1;Parent=MS.gene012188.t1
Gene Sequence

>MS.gene012188

ATGGCGACTACTCAGCTTACTGCTTCATCGATTTCTACGAGGAACCTTTCTTCCTTTGAAGGATTGCGAACTTCCGCAATTCATTTTCCTCGTAACAATGCTAGAATTGGTATTCTTACACAAAGGTCGTTCCCGTCTATTGTTGTTAAAGCCGCCACTGTTGTTACCCCCAAGGTATTATTTTTATTTTTTGGGTCATGGGTTTTCTTTATTATCTGCGGCAAAATTATTCTTTTCAGTAGTATATTATGATAAAATAGAGTTAAATTGTTTTTGTATATGCTGCTATAAGTTGTGTTTATAAGCTATCTTGGAGAACTTGCGAAATTAAGTTGAGAAACACTTATGAAAAGTGCCATAAGCTATAAGCTCTTTCAAACACCCACTCAAGTGCATTATGAGATAGTTATCACACAAGTGCATTATCTTACGAGTGCCCCTTAGTATAAGAGAAAATGTACAATTTGTGAGTAGATAGAGAAAGCGAAGCTACAGCGAGAGATCAAAGTAGGAGTTAGAAAGAGTGAAAAATTCATTTGCAACTAAATTTCAGACCAATAAAAAAAAAGGGCAACCCGGTGCACTAAAGCTCCCGCATACGCGGGGTCCGGGAAGGGGGTCCCACCATTTTTGAATATTTTTCAGACCAATATTTATGAATATTTTTCGTACAGAAGAACATTATCTTTTTATTTCGTAAGCGAAATAGCAGACTATTGATATACATTTCATCTTGAATTAACATGTTCATTGATATACATAAGCCCTGTCCCATGGGATTATTTCTAATGTTTTTACTTCTACATTTTACAATTCAATGCTGCATGCGCCTTATTAGTAATTTCATCTTGTAGCATACAACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATCAAGGATGCAGAAGAGAAAACTCAGGGTGGAATTTTGCTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGACGGAAAGACAGTTGGGAAGAACAAAGTGGACATTAGTGTGAAGGTGGGTGATGCCACTAGCTTATGGAATCCTTTAAGCCTTGGTCTTTCTTTTATTTTGGATTTATGTAATGTATTTCTCTTTACAGGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGAACTGAAGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATCGTTGGTATTCTTGAAACCGAAGAGGTCAAAGATCTTAAACCCTTGAATGACAGAGTCTTGATAAAGGTGTGGAACTTTTCTGAGATTTGATTATTTCGATGCTCCAGTTGTCTTGATGATCTGCCCATTTAATTATTTGTCTTAACCATATTTTGCATTAAGGTGTTACGTTTAAAGGCAATATTATATCTGAATATTATACATGCCTTTAATTATGATGCTGCAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACGGAAGCAACCAAGGATAAGCCATCCATTGGCACGGTAAGCTTTTCTATTCTCCTTTTTTTGAAACAGTATACTTAAAAAGTAACACCACTCTTCTAAAAGAGGGCAATGTTATATCGTATGAAGGGAAGGTCACAAGAATTGCAAGAATGTGATTTGGGCTGTTTTCAAAAAATTAAAACAATGGATGGTCTGGTGAAAATGAACGCATTAGATACTGTCGTGCATTTAATTTTTGTGTTCCTGTAGCAACTAGCATTATCCCTTAAGACGGTAGAATGTGTTGATGACAGTTTAACTGATGCTTATTTTTATTTATTGCTTTAGCTCAGGTCATTGGTTTGGTTCTTACTTGCTTAGCTGTAACATTGTTTTGATCGAGTAGTTTTGGTCCTAGGTATGTAAATAACCATTCTACTCCTTTTGGATGTAACAGGTGATAGCTGTTGGTCCAGGGCCTGTGGATGACGAAGGCAACAGAAAACCATTATCCATTTCACCCGGGAATACAGTTTTGTACTCCAAATATGCAGGGAATGACTTCAAAGGCAAAGATGGTTCTGATTATATTGCTTTGAGAGCCTCAGATGTCATGGCTATCCTCTCTTAA
Protein sequence

>MS.gene012188.t1

MATTQLTASSISTRNLSSFEGLRTSAIHFPRNNARIGILTQRSFPSIVVKAATVVTPKHTTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAVGDGKTVGKNKVDISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPGPVDDEGNRKPLSISPGNTVLYSKYAGNDFKGKDGSDYIALRASDVMAILS