AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39354


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39354.t1 MTR_8g009280 97.778 135 3 0 1 135 1 135 1.13e-94 269
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39354.t1 AT3G60210 60.432 139 50 3 1 135 1 138 5.29e-56 171
MS.gene39354.t1 AT2G44650 58.273 139 54 2 1 135 1 139 2.68e-53 164

Find 36 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCGGCACCAACATTT+AGG 0.253224 8.2:+81752964 None:intergenic
TAAGAAATGGGAACCCTCTA+AGG 0.340240 8.2:-81754262 MS.gene39354:intron
AGGTTGTGCCTCAGGCTGAT+AGG 0.348377 8.2:-81754145 MS.gene39354:CDS
CATTAAATCAAGTGACTTGT+TGG 0.348829 8.2:-81750766 MS.gene39354:CDS
AGAAATTGGAATAACCTTAG+AGG 0.365531 8.2:+81754248 None:intergenic
TTAATGCAATTGCTAAGAAA+TGG 0.381136 8.2:-81754275 MS.gene39354:CDS
GAATTATACTTGGGAGTCTC+TGG 0.395066 8.2:+81754414 None:intergenic
CTCAAATTTAACAGCTGACT+TGG 0.404760 8.2:+81753094 None:intergenic
TGGATTGCAGGTTGTGCCTC+AGG 0.408276 8.2:-81754153 MS.gene39354:intron
CACCGACATAAATGCTTATG+AGG 0.413729 8.2:-81751085 MS.gene39354:intron
CTTGTTGGCCGTCGTTGAGT+AGG 0.414558 8.2:-81750751 None:intergenic
TTGTGAAGGAAGGGAGTTGT+TGG 0.416342 8.2:+81754461 None:intergenic
TTTGAAGAGGAACTCTTTGA+AGG 0.442390 8.2:-81754298 MS.gene39354:CDS
TAATGCAATTGCTAAGAAAT+GGG 0.473150 8.2:-81754274 MS.gene39354:CDS
GGTTGTGCCTCAGGCTGATA+GGG 0.488435 8.2:-81754144 MS.gene39354:CDS
TTGTTGGCCGTCGTTGAGTA+GGG 0.502146 8.2:-81750750 None:intergenic
AAATTTGAGCGATATCTTGT+GGG 0.511491 8.2:-81753080 MS.gene39354:CDS
GAAATTGGAATAACCTTAGA+GGG 0.512239 8.2:+81754249 None:intergenic
TAAATTTGAGCGATATCTTG+TGG 0.516085 8.2:-81753081 MS.gene39354:CDS
TAGGGTTCTTATTCGTCTTG+AGG 0.524050 8.2:-81754126 MS.gene39354:CDS
TTGTCTCAGGTCCTAAATGT+TGG 0.526187 8.2:-81752975 MS.gene39354:intron
TCAAATTTAACAGCTGACTT+GGG 0.548423 8.2:+81753095 None:intergenic
TGTTGGTATGGTGAGAAATG+TGG 0.554797 8.2:+81754478 None:intergenic
GAGGCTGAAAATGTAAAAGC+TGG 0.554966 8.2:-81752948 MS.gene39354:CDS
TATACTTGGGAGTCTCTGGT+TGG 0.556109 8.2:+81754418 None:intergenic
CTGGTTGGAGAAAGAAGCGG+TGG 0.589531 8.2:+81754433 None:intergenic
TTTGGGCAGAAAACTGCTGG+TGG 0.594539 8.2:-81753128 MS.gene39354:intron
AAGGAAGGGAGTTGTTGGTA+TGG 0.597282 8.2:+81754466 None:intergenic
AAATGTAAAAGCTGGCTCGA+AGG 0.601859 8.2:-81752940 MS.gene39354:intron
GGTCCTAAATGTTGGTGCCG+AGG 0.611786 8.2:-81752967 MS.gene39354:CDS
GGTTGGAGAAAGAAGCGGTG+GGG 0.659685 8.2:+81754435 None:intergenic
AACCTCATAAGCATTTATGT+CGG 0.663411 8.2:+81751083 None:intergenic
GGCCAAACCCTACTCAACGA+CGG 0.678555 8.2:+81750743 None:intergenic
TGGTTGGAGAAAGAAGCGGT+GGG 0.681233 8.2:+81754434 None:intergenic
ATAAGAACCCTATCAGCCTG+AGG 0.720606 8.2:+81754137 None:intergenic
TCTCTGGTTGGAGAAAGAAG+CGG 0.732198 8.2:+81754430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAACTTTTTTTTCATTT+GGG - chr8.2:81750905-81750924 MS.gene39354:intron 10.0%
!!! TTATAATTTTAAATATGGAA+TGG + chr8.2:81754104-81754123 None:intergenic 10.0%
!! AGTATATAACAATAAGTTAT+AGG + chr8.2:81751945-81751964 None:intergenic 15.0%
!! GTATATAACAATAAGTTATA+GGG + chr8.2:81751944-81751963 None:intergenic 15.0%
!! TTAAATGAATTAATCAATGT+CGG - chr8.2:81754223-81754242 MS.gene39354:intron 15.0%
!!! GATTGTGAATATAATTTTTT+GGG - chr8.2:81752092-81752111 MS.gene39354:intron 15.0%
!!! GTATTAACTTTTTTTTCATT+TGG - chr8.2:81750904-81750923 MS.gene39354:intron 15.0%
!!! TATGATTTTTGGTTATTTTT+TGG - chr8.2:81751064-81751083 MS.gene39354:intron 15.0%
!!! TGATTGTGAATATAATTTTT+TGG - chr8.2:81752091-81752110 MS.gene39354:intron 15.0%
!!! TTTTGTAATATGAGATATTT+CGG - chr8.2:81753400-81753419 MS.gene39354:intron 15.0%
!! AAATAAAGGAAAATAGTTAG+TGG - chr8.2:81754046-81754065 MS.gene39354:intron 20.0%
!! ACATTTGTACTTATGTATAA+AGG - chr8.2:81754189-81754208 MS.gene39354:intron 20.0%
!! ACTTCGTTAAAATGAATAAA+AGG + chr8.2:81750886-81750905 None:intergenic 20.0%
!! ATTTATTAATCAAATGACCA+TGG - chr8.2:81753896-81753915 MS.gene39354:intron 20.0%
!! CAAATATAGAAACAATGTAT+CGG + chr8.2:81751882-81751901 None:intergenic 20.0%
!! CTTCGTTAAAATGAATAAAA+GGG + chr8.2:81750885-81750904 None:intergenic 20.0%
!! TAGTTCAAATGACAAAATAA+AGG - chr8.2:81754032-81754051 MS.gene39354:intron 20.0%
!! TTACTAATTAATTAGTTGTG+AGG - chr8.2:81753235-81753254 MS.gene39354:intron 20.0%
!! TTGTTTAATTACTATGAAAG+AGG - chr8.2:81752324-81752343 MS.gene39354:intron 20.0%
!! TTTGTAATATGAGATATTTC+GGG - chr8.2:81753401-81753420 MS.gene39354:intron 20.0%
!!! AATCATAATTATTCTTTTGC+AGG - chr8.2:81754122-81754141 MS.gene39354:CDS 20.0%
!!! AATCATTATGGTAATTTGTT+GGG - chr8.2:81753486-81753505 MS.gene39354:intron 20.0%
!!! AATTCTAATTTGTAACTCAA+CGG - chr8.2:81754367-81754386 MS.gene39354:intron 20.0%
!!! AATTTTTTTGGATAAGATTG+TGG + chr8.2:81751153-81751172 None:intergenic 20.0%
!!! TAAGGGAATATTTCTTTTTT+TGG + chr8.2:81751804-81751823 None:intergenic 20.0%
!!! TTGTTTTTGCATATGATTTT+TGG - chr8.2:81751053-81751072 MS.gene39354:intron 20.0%
! AATTGAATGCACAAAGTTTA+AGG + chr8.2:81751822-81751841 None:intergenic 25.0%
! ACACTTAAAATATGATGAGA+AGG - chr8.2:81753212-81753231 MS.gene39354:intron 25.0%
! AGACATTAGTTCAATCATTA+TGG - chr8.2:81753474-81753493 MS.gene39354:intron 25.0%
! AGTAAGTATACATATTGCAT+AGG - chr8.2:81752183-81752202 MS.gene39354:intron 25.0%
! AGTAGAAGAAGAATTATACT+TGG + chr8.2:81750836-81750855 None:intergenic 25.0%
! ATTATATTCACAATCATGCA+CGG + chr8.2:81752087-81752106 None:intergenic 25.0%
! ATTGAATGCACAAAGTTTAA+GGG + chr8.2:81751821-81751840 None:intergenic 25.0%
! CAGAAAATGAAAAGAGAAAT+TGG + chr8.2:81751006-81751025 None:intergenic 25.0%
! GTAGAAGAAGAATTATACTT+GGG + chr8.2:81750835-81750854 None:intergenic 25.0%
! TAATGCAATTGCTAAGAAAT+GGG - chr8.2:81750963-81750982 MS.gene39354:intron 25.0%
! TATGAACAAGTTCATAACTT+GGG + chr8.2:81753765-81753784 None:intergenic 25.0%
! TGTAATTGGCACTTATAAAT+TGG - chr8.2:81752060-81752079 MS.gene39354:intron 25.0%
! TTAATGCAATTGCTAAGAAA+TGG - chr8.2:81750962-81750981 MS.gene39354:intron 25.0%
! TTATGAACAAGTTCATAACT+TGG + chr8.2:81753766-81753785 None:intergenic 25.0%
! TTATTTGTACAGTATCTATC+TGG - chr8.2:81753699-81753718 MS.gene39354:intron 25.0%
! TTTAATTACTATGAAAGAGG+TGG - chr8.2:81752327-81752346 MS.gene39354:intron 25.0%
!! ACTTTTAGCAATGAAAGTTT+AGG - chr8.2:81753054-81753073 MS.gene39354:intron 25.0%
!! ATGTGATACAACATTTTTGA+AGG - chr8.2:81753427-81753446 MS.gene39354:intron 25.0%
!! ATTTTACTATAATGTCCGTA+AGG - chr8.2:81752032-81752051 MS.gene39354:intron 25.0%
!! CAATCATTATGGTAATTTGT+TGG - chr8.2:81753485-81753504 MS.gene39354:intron 25.0%
!! CAATTTCTCTTTTCATTTTC+TGG - chr8.2:81751004-81751023 MS.gene39354:intron 25.0%
!! GTCTAAACTTGATAATATAG+AGG - chr8.2:81753944-81753963 MS.gene39354:intron 25.0%
!! TTGTGTCTAAAGAAATTTTC+AGG - chr8.2:81753808-81753827 MS.gene39354:intron 25.0%
!!! ATAACACAATTTTGAAGAAG+CGG + chr8.2:81753657-81753676 None:intergenic 25.0%
!!! CGATACATTGTTTCTATATT+TGG - chr8.2:81751880-81751899 MS.gene39354:intron 25.0%
!!! TATTGGTCTAATTGTTTTTC+AGG - chr8.2:81754417-81754436 MS.gene39354:intron 25.0%
!!! TCTGGTTTTTTGTTTTTGAA+AGG - chr8.2:81751022-81751041 MS.gene39354:intron 25.0%
AAAACTAAGCTGTATCACAT+TGG - chr8.2:81751496-81751515 MS.gene39354:intron 30.0%
AAATTTGAGCGATATCTTGT+GGG - chr8.2:81752157-81752176 MS.gene39354:intron 30.0%
AACACATCAAAATCATGACA+CGG + chr8.2:81751454-81751473 None:intergenic 30.0%
AACCTCATAAGCATTTATGT+CGG + chr8.2:81754157-81754176 None:intergenic 30.0%
AATGAAAGTTTAGGTGTGTT+GGG - chr8.2:81753063-81753082 MS.gene39354:intron 30.0%
ACTACCCTAAGTTATATGTA+TGG + chr8.2:81751746-81751765 None:intergenic 30.0%
AGAAATTGGAATAACCTTAG+AGG + chr8.2:81750992-81751011 None:intergenic 30.0%
CAATGAGGATATATCAGATT+AGG + chr8.2:81751536-81751555 None:intergenic 30.0%
GAAATTGGAATAACCTTAGA+GGG + chr8.2:81750991-81751010 None:intergenic 30.0%
GATGCCATACATATAACTTA+GGG - chr8.2:81751739-81751758 MS.gene39354:intron 30.0%
GTGAATGTGATTTAACTAGT+TGG - chr8.2:81751981-81752000 MS.gene39354:intron 30.0%
TAAATTTGAGCGATATCTTG+TGG - chr8.2:81752156-81752175 MS.gene39354:intron 30.0%
TAAGTTACCGATATTCAATG+TGG - chr8.2:81752610-81752629 MS.gene39354:intron 30.0%
TACTCATAAGTCATGTAAGA+AGG - chr8.2:81751668-81751687 MS.gene39354:intron 30.0%
TGATGCCATACATATAACTT+AGG - chr8.2:81751738-81751757 MS.gene39354:intron 30.0%
TGCAGTTATCTCGATAATAA+GGG + chr8.2:81751613-81751632 None:intergenic 30.0%
TGCTTGCCATTGTAAAATTA+GGG + chr8.2:81752471-81752490 None:intergenic 30.0%
TTCAGCTGTAAAACAACATA+AGG + chr8.2:81752211-81752230 None:intergenic 30.0%
TTGCAGTTATCTCGATAATA+AGG + chr8.2:81751614-81751633 None:intergenic 30.0%
TTGCTTGCCATTGTAAAATT+AGG + chr8.2:81752472-81752491 None:intergenic 30.0%
! AAAGGACCCTAATTTTACAA+TGG - chr8.2:81752462-81752481 MS.gene39354:intron 30.0%
! ATCTGAAGAACAACTTTTGT+GGG - chr8.2:81754259-81754278 MS.gene39354:intron 30.0%
! ATGTAAGAAGGTATAGACTA+GGG - chr8.2:81751680-81751699 MS.gene39354:intron 30.0%
! ATTCCTTTTGTATTTGTCTC+AGG - chr8.2:81752249-81752268 MS.gene39354:intron 30.0%
! CATTAAATCAAGTGACTTGT+TGG - chr8.2:81754471-81754490 MS.gene39354:CDS 30.0%
! GAATGTTGGATTTGTTTGTA+GGG - chr8.2:81751392-81751411 MS.gene39354:intron 30.0%
! TATCTGAAGAACAACTTTTG+TGG - chr8.2:81754258-81754277 MS.gene39354:intron 30.0%
! TCAAATTTAACAGCTGACTT+GGG + chr8.2:81752145-81752164 None:intergenic 30.0%
! TGAATGTTGGATTTGTTTGT+AGG - chr8.2:81751391-81751410 MS.gene39354:intron 30.0%
! TTACGTTGCTATTGTAAACT+GGG + chr8.2:81752593-81752612 None:intergenic 30.0%
!! AATTTTGAAGAAGCGGATAA+GGG + chr8.2:81753650-81753669 None:intergenic 30.0%
!! CTTGTTATTGTTCCAATGTT+TGG - chr8.2:81751321-81751340 MS.gene39354:intron 30.0%
!! TGTCATGATTTTGATGTGTT+TGG - chr8.2:81751454-81751473 MS.gene39354:intron 30.0%
!!! AATTGTTTTTCAGGTGGATT+TGG - chr8.2:81754426-81754445 MS.gene39354:CDS 30.0%
!!! ATTGTTTTTCAGGTGGATTT+GGG - chr8.2:81754427-81754446 MS.gene39354:CDS 30.0%
!!! ATTTTTTAAGAACCACGTTC+GGG - chr8.2:81753855-81753874 MS.gene39354:intron 30.0%
!!! CATTTTTTAAGAACCACGTT+CGG - chr8.2:81753854-81753873 MS.gene39354:intron 30.0%
!!! TGTTATTTTGCAACTCTGTT+TGG - chr8.2:81753671-81753690 MS.gene39354:intron 30.0%
!!! TTGGTTATTTTTTGGATTGC+AGG - chr8.2:81751072-81751091 MS.gene39354:intron 30.0%
AACAAGTTCATAACTTGGGA+AGG + chr8.2:81753761-81753780 None:intergenic 35.0%
AAGCTCATAGATGGTTTATC+TGG - chr8.2:81752937-81752956 MS.gene39354:intron 35.0%
ACAAAGCGAAATAGAAACCA+TGG + chr8.2:81753916-81753935 None:intergenic 35.0%
ACGAACAGATTTGGGAATAT+TGG + chr8.2:81752915-81752934 None:intergenic 35.0%
ATATTCAATGTGGTCTATGG+CGG - chr8.2:81752620-81752639 MS.gene39354:intron 35.0%
ATGGTTACTTGTTTGTACCT+TGG + chr8.2:81752522-81752541 None:intergenic 35.0%
ATTTCATCACCAATAACTCC+AGG + chr8.2:81752549-81752568 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG + chr8.2:81751781-81751800 None:intergenic 35.0%
CAATGAAAGTTTAGGTGTGT+TGG - chr8.2:81753062-81753081 MS.gene39354:intron 35.0%
CCATAGACCACATTGAATAT+CGG + chr8.2:81752620-81752639 None:intergenic 35.0%
CTAGGATAAGTTCAAACTGT+AGG - chr8.2:81751367-81751386 MS.gene39354:intron 35.0%
CTCAAATTTAACAGCTGACT+TGG + chr8.2:81752146-81752165 None:intergenic 35.0%
CTTCTAAACTTGTGCCTTAA+GGG - chr8.2:81751903-81751922 MS.gene39354:intron 35.0%
GATAGCAAGATCTAACAACT+TGG - chr8.2:81753548-81753567 MS.gene39354:intron 35.0%
GCAGTCTTGAAATAATCACT+AGG - chr8.2:81751349-81751368 MS.gene39354:intron 35.0%
GCCAATTACAGAATACCTTA+CGG + chr8.2:81752050-81752069 None:intergenic 35.0%
TATAATAAGTATCCCGAACG+TGG + chr8.2:81753870-81753889 None:intergenic 35.0%
TCCACAAGTTAAGAACTATG+TGG + chr8.2:81753726-81753745 None:intergenic 35.0%
TCTCGATAATAAGGGAACAT+CGG + chr8.2:81751605-81751624 None:intergenic 35.0%
TGACATAAATCCTAATCCCA+AGG - chr8.2:81752502-81752521 MS.gene39354:intron 35.0%
TGCTATTGTAAACTGGGAAT+TGG + chr8.2:81752587-81752606 None:intergenic 35.0%
TGGTTACTTGTTTGTACCTT+GGG + chr8.2:81752521-81752540 None:intergenic 35.0%
TTTCATCACCAATAACTCCA+GGG + chr8.2:81752548-81752567 None:intergenic 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr8.2:81751780-81751799 None:intergenic 35.0%
TTTGAAGAGGAACTCTTTGA+AGG - chr8.2:81750939-81750958 MS.gene39354:intron 35.0%
! AACTTGGAAGTCTCTTTTGT+TGG - chr8.2:81753564-81753583 MS.gene39354:intron 35.0%
! ACTTGGAAGTCTCTTTTGTT+GGG - chr8.2:81753565-81753584 MS.gene39354:intron 35.0%
! AGCTTTTACATTTTCAGCCT+CGG + chr8.2:81752290-81752309 None:intergenic 35.0%
! CATGTAAGAAGGTATAGACT+AGG - chr8.2:81751679-81751698 MS.gene39354:intron 35.0%
! CTTACGTTGCTATTGTAAAC+TGG + chr8.2:81752594-81752613 None:intergenic 35.0%
! GATTTGTTTGTAGGGATCAT+TGG - chr8.2:81751400-81751419 MS.gene39354:intron 35.0%
! GTATTTGAGCAAGTGCTATT+TGG - chr8.2:81754284-81754303 MS.gene39354:CDS 35.0%
! TAAACTGGGAATTGGAGTTT+TGG + chr8.2:81752579-81752598 None:intergenic 35.0%
! TAGTTGACTCAGATTCTGAA+AGG - chr8.2:81752444-81752463 MS.gene39354:intron 35.0%
! TCCACATAGTTCTTAACTTG+TGG - chr8.2:81753722-81753741 MS.gene39354:intron 35.0%
! TCCGTAAGGTATTCTGTAAT+TGG - chr8.2:81752046-81752065 MS.gene39354:intron 35.0%
! TGTTAGATCTTGCTATCACA+AGG + chr8.2:81753545-81753564 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr8.2:81751920-81751939 None:intergenic 35.0%
!! CAATTTTGAAGAAGCGGATA+AGG + chr8.2:81753651-81753670 None:intergenic 35.0%
!! GTTGTTTTGTCAGTGAAAAC+AGG - chr8.2:81751575-81751594 MS.gene39354:intron 35.0%
!!! CTTTTTTCAAGAAAGCAGTG+TGG + chr8.2:81754336-81754355 None:intergenic 35.0%
!!! GCTGTCATTTTAGATTATGG+CGG - chr8.2:81752689-81752708 MS.gene39354:intron 35.0%
!!! GGTATGTTTCAGTTTTGAAG+AGG - chr8.2:81750926-81750945 MS.gene39354:intron 35.0%
!!! TGGTCTAATTGTTTTTCAGG+TGG - chr8.2:81754420-81754439 MS.gene39354:intron 35.0%
!!! TTGTTTTTCAGGTGGATTTG+GGG - chr8.2:81754428-81754447 MS.gene39354:CDS 35.0%
AAACAAGTAACCATGAACCC+TGG - chr8.2:81752528-81752547 MS.gene39354:intron 40.0%
AAACCTTGGACAATACCACT+GGG - chr8.2:81752992-81753011 MS.gene39354:intron 40.0%
ACACAAATTCGTCTGCTGAA+GGG + chr8.2:81753794-81753813 None:intergenic 40.0%
ACTAAGCTGTATCACATTGG+TGG - chr8.2:81751499-81751518 MS.gene39354:intron 40.0%
ATATCTGCTGAAATTGGGCA+TGG - chr8.2:81752723-81752742 MS.gene39354:intron 40.0%
ATGCCCAATTTCAGCAGATA+TGG + chr8.2:81752724-81752743 None:intergenic 40.0%
CAAGCTGATGACATTCAATG+AGG + chr8.2:81751551-81751570 None:intergenic 40.0%
CACCGACATAAATGCTTATG+AGG - chr8.2:81754152-81754171 MS.gene39354:intron 40.0%
CCGATATTCAATGTGGTCTA+TGG - chr8.2:81752617-81752636 MS.gene39354:intron 40.0%
CTCATTGAATGTCATCAGCT+TGG - chr8.2:81751549-81751568 MS.gene39354:intron 40.0%
CTGCCATATCTGCTGAAATT+GGG - chr8.2:81752718-81752737 MS.gene39354:intron 40.0%
CTTGTTTGTACCTTGGGATT+AGG + chr8.2:81752515-81752534 None:intergenic 40.0%
GAATTATACTTGGGAGTCTC+TGG + chr8.2:81750826-81750845 None:intergenic 40.0%
GAGCTTCAACGAACAGATTT+GGG + chr8.2:81752923-81752942 None:intergenic 40.0%
GAGGCTGAAAATGTAAAAGC+TGG - chr8.2:81752289-81752308 MS.gene39354:intron 40.0%
GCTTCTAAACTTGTGCCTTA+AGG - chr8.2:81751902-81751921 MS.gene39354:intron 40.0%
GGACCTGAGACAAATACAAA+AGG + chr8.2:81752255-81752274 None:intergenic 40.0%
GTGTTGTCAAATATCAGCCA+TGG + chr8.2:81752877-81752896 None:intergenic 40.0%
TAAACCTTGGACAATACCAC+TGG - chr8.2:81752991-81753010 MS.gene39354:intron 40.0%
TAAGAAATGGGAACCCTCTA+AGG - chr8.2:81750975-81750994 MS.gene39354:intron 40.0%
TAGGGTTCTTATTCGTCTTG+AGG - chr8.2:81751111-81751130 MS.gene39354:intron 40.0%
TCAAACTGTAGGCTGAATGT+TGG - chr8.2:81751378-81751397 MS.gene39354:intron 40.0%
TCACATATTTGCATGCCATG+CGG - chr8.2:81753978-81753997 MS.gene39354:intron 40.0%
TGAAAGAGGTGGAGTAGAAA+CGG - chr8.2:81752338-81752357 MS.gene39354:intron 40.0%
TGACACGGTACAACATCAAA+CGG + chr8.2:81751439-81751458 None:intergenic 40.0%
TGAGCTTCAACGAACAGATT+TGG + chr8.2:81752924-81752943 None:intergenic 40.0%
TGTCCAAGGTTTAAGTCCAA+AGG + chr8.2:81752984-81753003 None:intergenic 40.0%
TGTTCGTTGAAGCTCATAGA+TGG - chr8.2:81752928-81752947 MS.gene39354:intron 40.0%
TGTTGGTATGGTGAGAAATG+TGG + chr8.2:81750762-81750781 None:intergenic 40.0%
TTGACTCTAATCAGCCCAAA+AGG + chr8.2:81753021-81753040 None:intergenic 40.0%
TTGTCAAATATCAGCCATGG+CGG + chr8.2:81752874-81752893 None:intergenic 40.0%
TTGTCTCAGGTCCTAAATGT+TGG - chr8.2:81752262-81752281 MS.gene39354:intron 40.0%
TTTCAAGAAAGCAGTGTGGT+TGG + chr8.2:81754332-81754351 None:intergenic 40.0%
! CTTGGAAGTCTCTTTTGTTG+GGG - chr8.2:81753566-81753585 MS.gene39354:intron 40.0%
!! AAATGTAAAAGCTGGCTCGA+AGG - chr8.2:81752297-81752316 MS.gene39354:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr8.2:81751763-81751782 MS.gene39354:intron 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr8.2:81751762-81751781 MS.gene39354:intron 40.0%
!!! GGCGCTGTCATTTTAGATTA+TGG - chr8.2:81752686-81752705 MS.gene39354:intron 40.0%
!!! TTTTTTGGGCAGAAAACTGC+TGG - chr8.2:81752106-81752125 MS.gene39354:intron 40.0%
AAGGAAGGGAGTTGTTGGTA+TGG + chr8.2:81750774-81750793 None:intergenic 45.0%
ACCAATAACTCCAGGGTTCA+TGG + chr8.2:81752541-81752560 None:intergenic 45.0%
ACCATGAACCCTGGAGTTAT+TGG - chr8.2:81752537-81752556 MS.gene39354:intron 45.0%
ACTCTAATCAGCCCAAAAGG+TGG + chr8.2:81753018-81753037 None:intergenic 45.0%
AGACTGCAGACACCAAACAT+TGG + chr8.2:81751336-81751355 None:intergenic 45.0%
AGGCCTTTGGACTTAAACCT+TGG - chr8.2:81752978-81752997 MS.gene39354:intron 45.0%
ATAAGAACCCTATCAGCCTG+AGG + chr8.2:81751103-81751122 None:intergenic 45.0%
CAAAGGCCTTCTGTTTGAGA+GGG + chr8.2:81752967-81752986 None:intergenic 45.0%
CACATATTTGCATGCCATGC+GGG - chr8.2:81753979-81753998 MS.gene39354:intron 45.0%
CCAATTTCAGCAGATATGGC+AGG + chr8.2:81752720-81752739 None:intergenic 45.0%
CCTGCCATATCTGCTGAAAT+TGG - chr8.2:81752717-81752736 MS.gene39354:intron 45.0%
CTGTGTGTTATGAGCTGCTT+AGG + chr8.2:81753267-81753286 None:intergenic 45.0%
GACACAAATTCGTCTGCTGA+AGG + chr8.2:81753795-81753814 None:intergenic 45.0%
TACACGTTCGTTGAGCCTTA+AGG + chr8.2:81753118-81753137 None:intergenic 45.0%
TATACTTGGGAGTCTCTGGT+TGG + chr8.2:81750822-81750841 None:intergenic 45.0%
TCTCTGGTTGGAGAAAGAAG+CGG + chr8.2:81750810-81750829 None:intergenic 45.0%
TTGTGAAGGAAGGGAGTTGT+TGG + chr8.2:81750779-81750798 None:intergenic 45.0%
TTGTTGGGGTGAGGATTCAT+TGG - chr8.2:81753580-81753599 MS.gene39354:intron 45.0%
! AAGTCTCTTTTGTTGGGGTG+AGG - chr8.2:81753571-81753590 MS.gene39354:intron 45.0%
! GTGGGGTTTTTGTGAAGGAA+GGG + chr8.2:81750788-81750807 None:intergenic 45.0%
!! ATATCAGCCATGGCGGATAT+CGG + chr8.2:81752867-81752886 None:intergenic 45.0%
!! CATTAATAAATAATAAATAT+TGG - chr8.2:81754400-81754419 MS.gene39354:intron 5.0%
!!! AAAAAAAAAACTAATTTTTT+TGG + chr8.2:81751165-81751184 None:intergenic 5.0%
!!! AGTTTTTTTTTTTTTAATTT+GGG - chr8.2:81751173-81751192 MS.gene39354:intron 5.0%
!!! TAGTTTTTTTTTTTTTAATT+TGG - chr8.2:81751172-81751191 MS.gene39354:intron 5.0%
!!! TATGATTATAATTTTAAATA+TGG + chr8.2:81754109-81754128 None:intergenic 5.0%
AGTTTAGGTGTGTTGGGCTC+CGG - chr8.2:81753069-81753088 MS.gene39354:intron 50.0%
CCAAAGGCCTTCTGTTTGAG+AGG + chr8.2:81752968-81752987 None:intergenic 50.0%
CCTCTCAAACAGAAGGCCTT+TGG - chr8.2:81752965-81752984 MS.gene39354:CDS 50.0%
GACCAAAGAGTCCTCACACT+GGG - chr8.2:81753159-81753178 MS.gene39354:intron 50.0%
GGCTCAACGAACGTGTACAA+AGG - chr8.2:81753121-81753140 MS.gene39354:CDS 50.0%
TCTGCTGAAATTGGGCATGG+CGG - chr8.2:81752726-81752745 MS.gene39354:intron 50.0%
TGACCAAAGAGTCCTCACAC+TGG - chr8.2:81753158-81753177 MS.gene39354:intron 50.0%
TGGTTGGAGAAAGAAGCGGT+GGG + chr8.2:81750806-81750825 None:intergenic 50.0%
TTTGGGCAGAAAACTGCTGG+TGG - chr8.2:81752109-81752128 MS.gene39354:intron 50.0%
! AAGCGGTGGGGTTTTTGTGA+AGG + chr8.2:81750793-81750812 None:intergenic 50.0%
! AATACCACTGGGCCACCTTT+TGG - chr8.2:81753003-81753022 MS.gene39354:intron 50.0%
! ATACCACTGGGCCACCTTTT+GGG - chr8.2:81753004-81753023 MS.gene39354:intron 50.0%
! GATATCGGTGGGGGGTTTTT+GGG + chr8.2:81752852-81752871 None:intergenic 50.0%
! GGTGGGGTTTTTGTGAAGGA+AGG + chr8.2:81750789-81750808 None:intergenic 50.0%
!! TGTATCACATTGGTGGCGTG+CGG - chr8.2:81751506-81751525 MS.gene39354:intron 50.0%
AAGAGTCCTCACACTGGGAG+CGG - chr8.2:81753164-81753183 MS.gene39354:intron 55.0%
ACAAAGCGACCGGTATGGCA+GGG + chr8.2:81752666-81752685 None:intergenic 55.0%
AGGTTGTGCCTCAGGCTGAT+AGG - chr8.2:81751092-81751111 MS.gene39354:CDS 55.0%
ATGTGGTCTATGGCGGTCCA+TGG - chr8.2:81752627-81752646 MS.gene39354:intron 55.0%
CAGCCTCGGCACCAACATTT+AGG + chr8.2:81752276-81752295 None:intergenic 55.0%
CTCCCAGTGTGAGGACTCTT+TGG + chr8.2:81753164-81753183 None:intergenic 55.0%
CTGGTTGGAGAAAGAAGCGG+TGG + chr8.2:81750807-81750826 None:intergenic 55.0%
GGCATGCCCTCTCAAACAGA+AGG - chr8.2:81752958-81752977 MS.gene39354:CDS 55.0%
GGTTGGAGAAAGAAGCGGTG+GGG + chr8.2:81750805-81750824 None:intergenic 55.0%
GGTTGTGCCTCAGGCTGATA+GGG - chr8.2:81751093-81751112 MS.gene39354:CDS 55.0%
TATATCCCGCTCCCAGTGTG+AGG + chr8.2:81753173-81753192 None:intergenic 55.0%
TGGATTGCAGGTTGTGCCTC+AGG - chr8.2:81751084-81751103 MS.gene39354:intron 55.0%
TGGCCCAGTGGTATTGTCCA+AGG + chr8.2:81752998-81753017 None:intergenic 55.0%
TTTGCATGCCATGCGGGTAG+TGG - chr8.2:81753985-81754004 MS.gene39354:intron 55.0%
! GGATATCGGTGGGGGGTTTT+TGG + chr8.2:81752853-81752872 None:intergenic 55.0%
!! GGTCCTAAATGTTGGTGCCG+AGG - chr8.2:81752270-81752289 MS.gene39354:intron 55.0%
AGAGTCCTCACACTGGGAGC+GGG - chr8.2:81753165-81753184 MS.gene39354:intron 60.0%
CACAAAGCGACCGGTATGGC+AGG + chr8.2:81752667-81752686 None:intergenic 60.0%
CAGGGTCAAGGCAGGCCTTA+AGG - chr8.2:81753100-81753119 MS.gene39354:CDS 60.0%
CTTAAGGCCTGCCTTGACCC+TGG + chr8.2:81753102-81753121 None:intergenic 60.0%
GAGCCAAGACCCTGCCATAC+CGG - chr8.2:81752654-81752673 MS.gene39354:intron 60.0%
TGACAGCGCCACAAAGCGAC+CGG + chr8.2:81752676-81752695 None:intergenic 60.0%
TTAGGTGTGTTGGGCTCCGG+AGG - chr8.2:81753072-81753091 MS.gene39354:intron 60.0%
! AGGGTCTTGGCTCTCAGCCA+TGG + chr8.2:81752647-81752666 None:intergenic 60.0%
! ATGCGGGTAGTGGTGTGCAG+GGG - chr8.2:81753995-81754014 MS.gene39354:intron 60.0%
! CATGCGGGTAGTGGTGTGCA+GGG - chr8.2:81753994-81754013 MS.gene39354:intron 60.0%
! CTGCCATACCGGTCGCTTTG+TGG - chr8.2:81752665-81752684 MS.gene39354:intron 60.0%
!! AGCCATGGCGGATATCGGTG+GGG + chr8.2:81752862-81752881 None:intergenic 60.0%
!! CAGCCATGGCGGATATCGGT+GGG + chr8.2:81752863-81752882 None:intergenic 60.0%
!! TCAGCCATGGCGGATATCGG+TGG + chr8.2:81752864-81752883 None:intergenic 60.0%
AGGCTCACCAGGGTCAAGGC+AGG - chr8.2:81753092-81753111 MS.gene39354:CDS 65.0%
CAGCCCAAAAGGTGGCCCAG+TGG + chr8.2:81753010-81753029 None:intergenic 65.0%
CCTGCACACCACTACCCGCA+TGG + chr8.2:81753996-81754015 None:intergenic 65.0%
CCTTGACCCTGGTGAGCCTC+CGG + chr8.2:81753091-81753110 None:intergenic 65.0%
CGACCGGTATGGCAGGGTCT+TGG + chr8.2:81752660-81752679 None:intergenic 65.0%
GCGCCACAAAGCGACCGGTA+TGG + chr8.2:81752671-81752690 None:intergenic 65.0%
! CCATGCGGGTAGTGGTGTGC+AGG - chr8.2:81753993-81754012 MS.gene39354:intron 65.0%
!! CCATGGCGGATATCGGTGGG+GGG + chr8.2:81752860-81752879 None:intergenic 65.0%
!! GCCATGGCGGATATCGGTGG+GGG + chr8.2:81752861-81752880 None:intergenic 65.0%
CCCCCCACCGATATCCGCCA+TGG - chr8.2:81752857-81752876 MS.gene39354:intron 70.0%
CCGGAGGCTCACCAGGGTCA+AGG - chr8.2:81753088-81753107 MS.gene39354:CDS 70.0%
TGGGCTCCGGAGGCTCACCA+GGG - chr8.2:81753082-81753101 MS.gene39354:CDS 70.0%
TTGGGCTCCGGAGGCTCACC+AGG - chr8.2:81753081-81753100 MS.gene39354:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 81750752 81754507 81750752 ID=MS.gene39354
chr8.2 mRNA 81750752 81754507 81750752 ID=MS.gene39354.t1;Parent=MS.gene39354
chr8.2 exon 81754423 81754507 81754423 ID=MS.gene39354.t1.exon1;Parent=MS.gene39354.t1
chr8.2 CDS 81754423 81754507 81754423 ID=cds.MS.gene39354.t1;Parent=MS.gene39354.t1
chr8.2 exon 81754263 81754321 81754263 ID=MS.gene39354.t1.exon2;Parent=MS.gene39354.t1
chr8.2 CDS 81754263 81754321 81754263 ID=cds.MS.gene39354.t1;Parent=MS.gene39354.t1
chr8.2 exon 81754115 81754165 81754115 ID=MS.gene39354.t1.exon3;Parent=MS.gene39354.t1
chr8.2 CDS 81754115 81754165 81754115 ID=cds.MS.gene39354.t1;Parent=MS.gene39354.t1
chr8.2 exon 81753076 81753141 81753076 ID=MS.gene39354.t1.exon4;Parent=MS.gene39354.t1
chr8.2 CDS 81753076 81753141 81753076 ID=cds.MS.gene39354.t1;Parent=MS.gene39354.t1
chr8.2 exon 81752941 81752988 81752941 ID=MS.gene39354.t1.exon5;Parent=MS.gene39354.t1
chr8.2 CDS 81752941 81752988 81752941 ID=cds.MS.gene39354.t1;Parent=MS.gene39354.t1
chr8.2 exon 81751086 81751115 81751086 ID=MS.gene39354.t1.exon6;Parent=MS.gene39354.t1
chr8.2 CDS 81751086 81751115 81751086 ID=cds.MS.gene39354.t1;Parent=MS.gene39354.t1
chr8.2 exon 81750752 81750820 81750752 ID=MS.gene39354.t1.exon7;Parent=MS.gene39354.t1
chr8.2 CDS 81750752 81750820 81750752 ID=cds.MS.gene39354.t1;Parent=MS.gene39354.t1
Gene Sequence

>MS.gene39354

ATGGCTTCCACATTTCTCACCATACCAACAACTCCCTTCCTTCACAAAAACCCCACCGCTTCTTTCTCCAACCAGAGACTCCCAAGTATAATTCTTCTTCTACTCATCAAAAAATTCAGTTTTTTGTTGACCCTTTTATTCATTTTAACGAAGTATTAACTTTTTTTTCATTTGGGTATGTTTCAGTTTTGAAGAGGAACTCTTTGAAGGTTAATGCAATTGCTAAGAAATGGGAACCCTCTAAGGTTATTCCAATTTCTCTTTTCATTTTCTGGTTTTTTGTTTTTGAAAGGTTATATTTTTGTTTTTGCATATGATTTTTGGTTATTTTTTGGATTGCAGGTTGTGCCTCAGGCTGATAGGGTTCTTATTCGTCTTGAGGAGTTATCAGACGTATGCCACAATCTTATCCAAAAAAATTAGTTTTTTTTTTTTTAATTTGGGATTTTGTTTATTCTTAGTGTGCAGAAAATATGAGTAGATTACAGAACTTAATTATTCTTTCATTTGATGTTGTTTGTTGCTAATGTTGTTGTTATTAATATTATTTGTATTGTTGTTGTTGTTCACTTGTTATTGTTCCAATGTTTGGTGTCTGCAGTCTTGAAATAATCACTAGGATAAGTTCAAACTGTAGGCTGAATGTTGGATTTGTTTGTAGGGATCATTGGTTTAGCTAACTTGCCGTTTGATGTTGTACCGTGTCATGATTTTGATGTGTTTGGCGTGTTTATTTGTTGCAAAAAAACTAAGCTGTATCACATTGGTGGCGTGCGGCGTGCCTAATCTGATATATCCTCATTGAATGTCATCAGCTTGGTTTGTTGTTTTGTCAGTGAAAACAGGAACACCGATGTTCCCTTATTATCGAGATAACTGCAATCTAAATGCATCATGATATTTTTTTTTTTTTAATTACTCATAAGTCATGTAAGAAGGTATAGACTAGGGAGTTTATTATTGAAATTCTGTAAGTTATAATGCTGTGATGCCATACATATAACTTAGGGTAGTGTTAACTTGTGCCCTTAGGGCACATGTTAAGAAATCCAAAAAAAGAAATATTCCCTTAAACTTTGTGCATTCAATTCATTAAAACATTAAAGATTAAATTTAACACACGCATTCCGATACATTGTTTCTATATTTGGCTTCTAAACTTGTGCCTTAAGGGCACAAGTTAACATTTCCCTATAACTTATTGTTATATACTTATCGATGCTTTATGTGTGAATGTGATTTAACTAGTTGGCTTCATCTGTTTTATTATGATTAGTTTGATTTTACTATAATGTCCGTAAGGTATTCTGTAATTGGCACTTATAAATTGGTCCGTGCATGATTGTGAATATAATTTTTTGGGCAGAAAACTGCTGGTGGAATTTTGTTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAGTAAGTATACATATTGCATAGGTACCTTATGTTGTTTTACAGCTGAATATTTGTTCTCTATAATAATTCCTTTTGTATTTGTCTCAGGTCCTAAATGTTGGTGCCGAGGCTGAAAATGTAAAAGCTGGCTCGAAGGTATGTTGTTTAATTACTATGAAAGAGGTGGAGTAGAAACGGAAAATATCAAAAGAGTAATCTAAAAACTCTCAATTTTATTTAATAATATGTCAACAATCTTGTGATTAATACTATGTTTTGTATAGTTGACTCAGATTCTGAAAGGACCCTAATTTTACAATGGCAAGCAACTCAAACTTGTGACATAAATCCTAATCCCAAGGTACAAACAAGTAACCATGAACCCTGGAGTTATTGGTGATGAAATATGAATGCCAAAACTCCAATTCCCAGTTTACAATAGCAACGTAAGTTACCGATATTCAATGTGGTCTATGGCGGTCCATGGCTGAGAGCCAAGACCCTGCCATACCGGTCGCTTTGTGGCGCTGTCATTTTAGATTATGGCGGAAAATCCTGCCATATCTGCTGAAATTGGGCATGGCTGAGAGCCAAGACCCTGCCATACCGGTCGCTTTGTGGCGCTGTCATTTTAGATTATGGCGGAAAATCCTGCCATATCTGCTGAAATTGGGCATGGCGGAGAGCCCAAAAACCCCCCACCGATATCCGCCATGGCTGATATTTGACAACACTGCTGATATTAAGAACCAATATTCCCAAATCTGTTCGTTGAAGCTCATAGATGGTTTATCTGGCATGCCCTCTCAAACAGAAGGCCTTTGGACTTAAACCTTGGACAATACCACTGGGCCACCTTTTGGGCTGATTAGAGTCAACTTATTGACTACTACTTTTAGCAATGAAAGTTTAGGTGTGTTGGGCTCCGGAGGCTCACCAGGGTCAAGGCAGGCCTTAAGGCTCAACGAACGTGTACAAAGGTGCTTACATATCACTGACCAAAGAGTCCTCACACTGGGAGCGGGATATAGCTTTGATACAATGATATCACACTTAAAATATGATGAGAAGGTTACTAATTAATTAGTTGTGAGGTGAAAACCTAAGCAGCTCATAACACACAGACATATATATTATGTGTATTACTATATTTTTTTATTACAAGAAACAGATAATACAACATCAAATTAGTAATTACTGAAGAAAATAGATCAAATAAATTTGTAATATACACACATTTTGTAATATGAGATATTTCGGGAAAATGTGATACAACATTTTTGAAGGTTATAGAACAATTTTTGTATTATTAGACATTAGTTCAATCATTATGGTAATTTGTTGGGCTAAATGATAAAATCATACGAGCACTAAGTGTGCCTTGTGATAGCAAGATCTAACAACTTGGAAGTCTCTTTTGTTGGGGTGAGGATTCATTGGTTTTGCAATTAACACAATGTTTCTGTTAGATTCTTATGCAGTTTCCCTTATCCGCTTCTTCAAAATTGTGTTATTTTGCAACTCTGTTTGGTTCTATTATTTGTACAGTATCTATCTGGTCCACATAGTTCTTAACTTGTGGAGTCATGAGTTCACCTTCCCAAGTTATGAACTTGTTCATAAGCTCACCCTTCAGCAGACGAATTTGTGTCTAAAGAAATTTTCAGGCACTAAAGCAACAGAAGTAGTAACATTTTTTAAGAACCACGTTCGGGATACTTATTATACTGTTAATTTATTAATCAAATGACCATGGTTTCTATTTCGCTTTGTTTTAATGTGTCTAAACTTGATAATATAGAGGAAGTTAGAGATTCACATATTTGCATGCCATGCGGGTAGTGGTGTGCAGGGGCAACATATTACTTTTAGTTCAAATGACAAAATAAAGGAAAATAGTTAGTGGTCTATGATTGAATCGATTGAGCTTGCTTGATTCCATTCCATATTTAAAATTATAATCATAATTATTCTTTTGCAGGTACTATTCACCGACATAAATGCTTATGAGGTTAGTCACTTAAAAACATTTGTACTTATGTATAAAGGTTTTCTATTTTTTAAATGAATTAATCAATGTCGGAAGAAATAGTTATATCTGAAGAACAACTTTTGTGGGAAGTATTTGAGCAAGTGCTATTTGGCAAGCATAGAGCAATTGTTATGCCAACCACACTGCTTTCTTGAAAAAAGAAAATTGATAGAATTCTAATTTGTAACTCAACGGTCGTTTTCATCATTAATAAATAATAAATATTGGTCTAATTGTTTTTCAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCATTAAATCAAGTGACTTGTTGGCCGTCGTTGAGTAG

Protein sequence

>MS.gene39354.t1

MASTFLTIPTTPFLHKNPTASFSNQRLPILKRNSLKVNAIAKKWEPSKVVPQADRVLIRLEELSDKTAGGILLPKSAVKFERYLVGEVLNVGAEAENVKAGSKVLFTDINAYEVDLGTDAKHCFIKSSDLLAVVE