Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39671.t1 | XP_003626805.1 | 97.8 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 3.00E-65 | 257.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39671.t1 | Q9M1C2 | 60.4 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 8.4e-40 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39671.t1 | G7LDE7 | 97.8 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 2.2e-65 | 257.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050163 | MS.gene39671 | 0.800066 | 1.72E-48 | -1.69E-46 |
| MS.gene050767 | MS.gene39671 | 0.826666 | 2.39E-54 | -1.69E-46 |
| MS.gene050770 | MS.gene39671 | 0.831603 | 1.52E-55 | -1.69E-46 |
| MS.gene051434 | MS.gene39671 | 0.842772 | 2.11E-58 | -1.69E-46 |
| MS.gene053322 | MS.gene39671 | 0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene39671 | 0.824053 | 9.94E-54 | -1.69E-46 |
| MS.gene054802 | MS.gene39671 | 0.834071 | 3.70E-56 | -1.69E-46 |
| MS.gene054803 | MS.gene39671 | 0.833627 | 4.78E-56 | -1.69E-46 |
| MS.gene054804 | MS.gene39671 | 0.835486 | 1.63E-56 | -1.69E-46 |
| MS.gene055397 | MS.gene39671 | 0.817576 | 3.07E-52 | -1.69E-46 |
| MS.gene055499 | MS.gene39671 | 0.823555 | 1.30E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene39671 | 0.801704 | 7.94E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene39671 | 0.825162 | 5.45E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene39671 | 0.852136 | 5.63E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene39671 | 0.814675 | 1.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24780 | MS.gene39671 | PPI |
| MS.gene065342 | MS.gene39671 | PPI |
| MS.gene39671 | MS.gene24509 | PPI |
| MS.gene26688 | MS.gene39671 | PPI |
| MS.gene39671 | MS.gene057439 | PPI |
| MS.gene24778 | MS.gene39671 | PPI |
| MS.gene66498 | MS.gene39671 | PPI |
| MS.gene39671 | MS.gene24508 | PPI |
| MS.gene39671 | MS.gene00537 | PPI |
| MS.gene39671 | MS.gene00538 | PPI |
| MS.gene39671 | MS.gene012188 | PPI |
| MS.gene051662 | MS.gene39671 | PPI |
| MS.gene39671 | MS.gene24776 | PPI |
| MS.gene39671 | MS.gene25661 | PPI |
| MS.gene25264 | MS.gene39671 | PPI |
| MS.gene39671 | MS.gene25664 | PPI |
| MS.gene39671 | MS.gene037125 | PPI |
| MS.gene39671 | MS.gene66497 | PPI |
| MS.gene051663 | MS.gene39671 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39671.t1 | MTR_8g009280 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 1.13e-94 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39671.t1 | AT3G60210 | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.29e-56 | 171 |
| MS.gene39671.t1 | AT2G44650 | 58.273 | 139 | 54 | 2 | 1 | 135 | 1 | 139 | 2.68e-53 | 164 |
Find 36 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCTCGGCACCAACATTT+AGG | 0.253224 | 8.3:+79746875 | None:intergenic |
| TAAGAAATGGGAACCCTCTA+AGG | 0.340240 | 8.3:-79747978 | MS.gene39671:intron |
| AGGTTGTGCCTCAGGCTGAT+AGG | 0.348377 | 8.3:-79747861 | MS.gene39671:CDS |
| CATTAAATCAAGTGACTTGT+TGG | 0.348829 | 8.3:-79744734 | MS.gene39671:CDS |
| AGAAATTGGAATAACCTTAG+AGG | 0.365531 | 8.3:+79747964 | None:intergenic |
| TTAATGCAATTGCTAAGAAA+TGG | 0.381136 | 8.3:-79747991 | MS.gene39671:CDS |
| GAATTATACTTGGGAGTCTC+TGG | 0.395066 | 8.3:+79748130 | None:intergenic |
| CTCAAATTTAACAGCTGACT+TGG | 0.404760 | 8.3:+79747006 | None:intergenic |
| TGGATTGCAGGTTGTGCCTC+AGG | 0.408276 | 8.3:-79747869 | MS.gene39671:intron |
| CACCGACATAAATGCTTATG+AGG | 0.413729 | 8.3:-79745053 | MS.gene39671:intron |
| CTTGTTGGCCGTCGTTGAGT+AGG | 0.414558 | 8.3:-79744719 | None:intergenic |
| TTGTGAAGGAAGGGAGTTGT+TGG | 0.416342 | 8.3:+79748177 | None:intergenic |
| TTTGAAGAGGAACTCTTTGA+AGG | 0.442390 | 8.3:-79748014 | MS.gene39671:CDS |
| TAATGCAATTGCTAAGAAAT+GGG | 0.473150 | 8.3:-79747990 | MS.gene39671:CDS |
| GGTTGTGCCTCAGGCTGATA+GGG | 0.488435 | 8.3:-79747860 | MS.gene39671:CDS |
| TTGTTTCAGGTCCTAAATGT+TGG | 0.499652 | 8.3:-79746886 | MS.gene39671:intron |
| TTGTTGGCCGTCGTTGAGTA+GGG | 0.502146 | 8.3:-79744718 | None:intergenic |
| AAATTTGAGCGATATCTTGT+GGG | 0.511491 | 8.3:-79746992 | MS.gene39671:CDS |
| GAAATTGGAATAACCTTAGA+GGG | 0.512239 | 8.3:+79747965 | None:intergenic |
| TAAATTTGAGCGATATCTTG+TGG | 0.516085 | 8.3:-79746993 | MS.gene39671:CDS |
| TAGGGTTCTTATTCGTCTTG+AGG | 0.524050 | 8.3:-79747842 | MS.gene39671:CDS |
| TCAAATTTAACAGCTGACTT+GGG | 0.548423 | 8.3:+79747007 | None:intergenic |
| TGTTGGTATGGTGAGAAATG+TGG | 0.554797 | 8.3:+79748194 | None:intergenic |
| GAGGCTGAAAATGTAAAAGC+TGG | 0.554966 | 8.3:-79746859 | MS.gene39671:CDS |
| TATACTTGGGAGTCTCTGGT+TGG | 0.556109 | 8.3:+79748134 | None:intergenic |
| CTGGTTGGAGAAAGAAGCGG+TGG | 0.589531 | 8.3:+79748149 | None:intergenic |
| TTTGGGCAGAAAACTGCTGG+TGG | 0.594539 | 8.3:-79747040 | MS.gene39671:intron |
| AAGGAAGGGAGTTGTTGGTA+TGG | 0.597282 | 8.3:+79748182 | None:intergenic |
| AAATGTAAAAGCTGGCTCGA+AGG | 0.601859 | 8.3:-79746851 | MS.gene39671:intron |
| GGTCCTAAATGTTGGTGCCG+AGG | 0.613958 | 8.3:-79746878 | MS.gene39671:CDS |
| GGTTGGAGAAAGAAGCGGTG+GGG | 0.659685 | 8.3:+79748151 | None:intergenic |
| AACCTCATAAGCATTTATGT+CGG | 0.663411 | 8.3:+79745051 | None:intergenic |
| GGCCAAACCCTACTCAACGA+CGG | 0.678555 | 8.3:+79744711 | None:intergenic |
| TGGTTGGAGAAAGAAGCGGT+GGG | 0.681233 | 8.3:+79748150 | None:intergenic |
| ATAAGAACCCTATCAGCCTG+AGG | 0.720606 | 8.3:+79747853 | None:intergenic |
| TCTCTGGTTGGAGAAAGAAG+CGG | 0.732198 | 8.3:+79748146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTAATTT+GGG | - | chr8.3:79745145-79745164 | MS.gene39671:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTTAATT+TGG | - | chr8.3:79745144-79745163 | MS.gene39671:intron | 0.0% |
| !!! | TATTAACTTTTTTTTCATTT+GGG | - | chr8.3:79744873-79744892 | MS.gene39671:intron | 10.0% |
| !! | ATAACAATAAGTTATATGTA+TGG | + | chr8.3:79745712-79745731 | None:intergenic | 15.0% |
| !! | ATATTTGTACTTATGTATAA+AGG | - | chr8.3:79747905-79747924 | MS.gene39671:intron | 15.0% |
| !! | TTAAATGAATTAATCAATGT+CGG | - | chr8.3:79747939-79747958 | MS.gene39671:intron | 15.0% |
| !!! | GATTGTGAATATAATTTTTT+GGG | - | chr8.3:79745864-79745883 | MS.gene39671:intron | 15.0% |
| !!! | GTATTAACTTTTTTTTCATT+TGG | - | chr8.3:79744872-79744891 | MS.gene39671:intron | 15.0% |
| !!! | TATGATTTTTGGTTATTTTT+TGG | - | chr8.3:79745032-79745051 | MS.gene39671:intron | 15.0% |
| !!! | TGATTGTGAATATAATTTTT+TGG | - | chr8.3:79745863-79745882 | MS.gene39671:intron | 15.0% |
| !! | AAATAAAGGAAAATAGTTAG+TGG | - | chr8.3:79747732-79747751 | MS.gene39671:intron | 20.0% |
| !! | ACTTCGTTAAAATGAATAAA+AGG | + | chr8.3:79744854-79744873 | None:intergenic | 20.0% |
| !! | CTTCGTTAAAATGAATAAAA+GGG | + | chr8.3:79744853-79744872 | None:intergenic | 20.0% |
| !! | TAGTTCAAATGATGAAATAA+AGG | - | chr8.3:79747718-79747737 | MS.gene39671:intron | 20.0% |
| !! | TTACTAATTAATTAGTTGTG+AGG | - | chr8.3:79746918-79746937 | MS.gene39671:intron | 20.0% |
| !! | TTGTTTATTTACTATGAAAG+AGG | - | chr8.3:79746097-79746116 | MS.gene39671:intron | 20.0% |
| !! | TTTGTAATATGAGATATTTC+AGG | - | chr8.3:79747085-79747104 | MS.gene39671:intron | 20.0% |
| !!! | AATCATAATTATTCTTTTGC+AGG | - | chr8.3:79747838-79747857 | MS.gene39671:CDS | 20.0% |
| !!! | AATCATTATGGTAATTTGTT+GGG | - | chr8.3:79747169-79747188 | MS.gene39671:intron | 20.0% |
| !!! | AATTCTAATTTGTAACTCAA+CGG | - | chr8.3:79748083-79748102 | MS.gene39671:intron | 20.0% |
| !!! | AATTTTTTTGGATAAGATTG+TGG | + | chr8.3:79745121-79745140 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGCATATGATTTT+TGG | - | chr8.3:79745021-79745040 | MS.gene39671:intron | 20.0% |
| ! | AGACATTAGTTCAATCATTA+TGG | - | chr8.3:79747157-79747176 | MS.gene39671:intron | 25.0% |
| ! | AGTAAGTATACATATTGCAT+AGG | - | chr8.3:79745955-79745974 | MS.gene39671:intron | 25.0% |
| ! | AGTAGAAGAAGAATTATACT+TGG | + | chr8.3:79744804-79744823 | None:intergenic | 25.0% |
| ! | ATTATATTCACAATCATGCA+TGG | + | chr8.3:79745859-79745878 | None:intergenic | 25.0% |
| ! | CAGAAAATGAAAAGAGAAAT+TGG | + | chr8.3:79744974-79744993 | None:intergenic | 25.0% |
| ! | GTAGAAGAAGAATTATACTT+GGG | + | chr8.3:79744803-79744822 | None:intergenic | 25.0% |
| ! | GTGAATGTGATTTAACTATT+TGG | - | chr8.3:79745753-79745772 | MS.gene39671:intron | 25.0% |
| ! | TAAATTACCGATATTCAATG+TGG | - | chr8.3:79746386-79746405 | MS.gene39671:intron | 25.0% |
| ! | TAATGCAATTGCTAAGAAAT+GGG | - | chr8.3:79744931-79744950 | MS.gene39671:intron | 25.0% |
| ! | TATGAACAAGTTCATAACTT+GGG | + | chr8.3:79747447-79747466 | None:intergenic | 25.0% |
| ! | TGTAATTGGCACTTATAAAT+TGG | - | chr8.3:79745832-79745851 | MS.gene39671:intron | 25.0% |
| ! | TTAATGCAATTGCTAAGAAA+TGG | - | chr8.3:79744930-79744949 | MS.gene39671:intron | 25.0% |
| ! | TTATGAACAAGTTCATAACT+TGG | + | chr8.3:79747448-79747467 | None:intergenic | 25.0% |
| ! | TTATTTGTACAGTATCTATC+TGG | - | chr8.3:79747381-79747400 | MS.gene39671:intron | 25.0% |
| ! | TTCAGATGTAAAACAACATA+AGG | + | chr8.3:79745983-79746002 | None:intergenic | 25.0% |
| !! | ACTTTTAGCAATGAAAGTTT+AGG | - | chr8.3:79746738-79746757 | MS.gene39671:intron | 25.0% |
| !! | CAATCATTATGGTAATTTGT+TGG | - | chr8.3:79747168-79747187 | MS.gene39671:intron | 25.0% |
| !! | CAATTTCTCTTTTCATTTTC+TGG | - | chr8.3:79744972-79744991 | MS.gene39671:intron | 25.0% |
| !! | GTCTAAACTTGATAATATAG+AGG | - | chr8.3:79747627-79747646 | MS.gene39671:intron | 25.0% |
| !! | TTAAGTTGCTATTGTAAACT+GGG | + | chr8.3:79746369-79746388 | None:intergenic | 25.0% |
| !! | TTGTGTCTAAAGAAATTTTC+AGG | - | chr8.3:79747490-79747509 | MS.gene39671:intron | 25.0% |
| !! | TTTCCTTTTGTATTTGTTTC+AGG | - | chr8.3:79746022-79746041 | MS.gene39671:intron | 25.0% |
| !!! | ATAACACAATTTTGAAGAAG+CGG | + | chr8.3:79747339-79747358 | None:intergenic | 25.0% |
| !!! | ATTTTTTAAGAACCACATTC+GGG | - | chr8.3:79747537-79747556 | MS.gene39671:intron | 25.0% |
| !!! | CATTTTTTAAGAACCACATT+CGG | - | chr8.3:79747536-79747555 | MS.gene39671:intron | 25.0% |
| !!! | TATTGGTCTAATTGTTTTTC+AGG | - | chr8.3:79748133-79748152 | MS.gene39671:intron | 25.0% |
| !!! | TCTGGTTTTTTGTTTTTGAA+AGG | - | chr8.3:79744990-79745009 | MS.gene39671:intron | 25.0% |
| !!! | TTTAAGTTGCTATTGTAAAC+TGG | + | chr8.3:79746370-79746389 | None:intergenic | 25.0% |
| AAAACTAAGCTGTATCACAT+TGG | - | chr8.3:79745468-79745487 | MS.gene39671:intron | 30.0% | |
| AAATTTGAGCGATATCTTGT+GGG | - | chr8.3:79745929-79745948 | MS.gene39671:intron | 30.0% | |
| AACACATCAAATTCATGACA+CGG | + | chr8.3:79745426-79745445 | None:intergenic | 30.0% | |
| AACCTCATAAGCATTTATGT+CGG | + | chr8.3:79747873-79747892 | None:intergenic | 30.0% | |
| AATGAAAGTTTAGGTGTGTT+GGG | - | chr8.3:79746747-79746766 | MS.gene39671:intron | 30.0% | |
| ACTCATTAATCAAATGACCA+TGG | - | chr8.3:79747578-79747597 | MS.gene39671:intron | 30.0% | |
| AGAAATTGGAATAACCTTAG+AGG | + | chr8.3:79744960-79744979 | None:intergenic | 30.0% | |
| ATTTCATTACCAATAACTCC+AGG | + | chr8.3:79746325-79746344 | None:intergenic | 30.0% | |
| CAAAGTGATAATAGAAACCA+TGG | + | chr8.3:79747598-79747617 | None:intergenic | 30.0% | |
| CAATGAGGATATATCAGATT+AGG | + | chr8.3:79745501-79745520 | None:intergenic | 30.0% | |
| CACACTTAAATATGATGAGA+AGG | - | chr8.3:79746895-79746914 | MS.gene39671:intron | 30.0% | |
| GAAATTGGAATAACCTTAGA+GGG | + | chr8.3:79744959-79744978 | None:intergenic | 30.0% | |
| TAAATTTGAGCGATATCTTG+TGG | - | chr8.3:79745928-79745947 | MS.gene39671:intron | 30.0% | |
| TACTCATAAGTCATGTAAGA+AGG | - | chr8.3:79745634-79745653 | MS.gene39671:intron | 30.0% | |
| TATAATAAGTATCCCGAATG+TGG | + | chr8.3:79747552-79747571 | None:intergenic | 30.0% | |
| TGACATAAATCCTAATCACA+AGG | - | chr8.3:79746278-79746297 | MS.gene39671:intron | 30.0% | |
| TGCAGTTATCTCGATAATAA+GGG | + | chr8.3:79745578-79745597 | None:intergenic | 30.0% | |
| TGCTTGCCATTGTAAAATTA+GGG | + | chr8.3:79746247-79746266 | None:intergenic | 30.0% | |
| TGTCATGAATTTGATGTGTT+TGG | - | chr8.3:79745426-79745445 | MS.gene39671:intron | 30.0% | |
| TTGCAGTTATCTCGATAATA+AGG | + | chr8.3:79745579-79745598 | None:intergenic | 30.0% | |
| TTGCTTGCCATTGTAAAATT+AGG | + | chr8.3:79746248-79746267 | None:intergenic | 30.0% | |
| TTTCATTACCAATAACTCCA+GGG | + | chr8.3:79746324-79746343 | None:intergenic | 30.0% | |
| ! | AATGTGATGCAACATTTTTG+AGG | - | chr8.3:79747110-79747129 | MS.gene39671:intron | 30.0% |
| ! | ATCTGAAGAACAACTTTTGT+GGG | - | chr8.3:79747975-79747994 | MS.gene39671:intron | 30.0% |
| ! | ATGTAAGAAGGTATAGACTA+GGG | - | chr8.3:79745646-79745665 | MS.gene39671:intron | 30.0% |
| ! | CATTAAATCAAGTGACTTGT+TGG | - | chr8.3:79748187-79748206 | MS.gene39671:CDS | 30.0% |
| ! | GAATGTTGGATTTGTTTGTA+GGG | - | chr8.3:79745364-79745383 | MS.gene39671:intron | 30.0% |
| ! | TATCTGAAGAACAACTTTTG+TGG | - | chr8.3:79747974-79747993 | MS.gene39671:intron | 30.0% |
| ! | TCAAATTTAACAGCTGACTT+GGG | + | chr8.3:79745917-79745936 | None:intergenic | 30.0% |
| ! | TGAATGTTGGATTTGTTTGT+AGG | - | chr8.3:79745363-79745382 | MS.gene39671:intron | 30.0% |
| !! | AATTTTGAAGAAGCGGATAA+GGG | + | chr8.3:79747332-79747351 | None:intergenic | 30.0% |
| !! | ATTTTGCTATAATGTCCGTA+AGG | - | chr8.3:79745804-79745823 | MS.gene39671:intron | 30.0% |
| !! | CTTGTTATTGTTCCAATGTT+TGG | - | chr8.3:79745293-79745312 | MS.gene39671:intron | 30.0% |
| !!! | AATTGTTTTTCAGGTGGATT+TGG | - | chr8.3:79748142-79748161 | MS.gene39671:CDS | 30.0% |
| !!! | ATTGTTTTTCAGGTGGATTT+GGG | - | chr8.3:79748143-79748162 | MS.gene39671:CDS | 30.0% |
| !!! | TGTTATTTTGCAACTCTGTT+TGG | - | chr8.3:79747353-79747372 | MS.gene39671:intron | 30.0% |
| !!! | TTGGTTATTTTTTGGATTGC+AGG | - | chr8.3:79745040-79745059 | MS.gene39671:intron | 30.0% |
| AAAATCATACGAGCACTAAG+TGG | - | chr8.3:79747201-79747220 | MS.gene39671:intron | 35.0% | |
| AACAAGTTCATAACTTGGGA+AGG | + | chr8.3:79747443-79747462 | None:intergenic | 35.0% | |
| ACCAACAGATTTGGGAATAT+TGG | + | chr8.3:79746594-79746613 | None:intergenic | 35.0% | |
| ACCAATATTCCCAAATCTGT+TGG | - | chr8.3:79746590-79746609 | MS.gene39671:intron | 35.0% | |
| ATATTCAATGTGGTCTATGG+CGG | - | chr8.3:79746396-79746415 | MS.gene39671:intron | 35.0% | |
| CAATGAAAGTTTAGGTGTGT+TGG | - | chr8.3:79746746-79746765 | MS.gene39671:intron | 35.0% | |
| CCATAGACCACATTGAATAT+CGG | + | chr8.3:79746396-79746415 | None:intergenic | 35.0% | |
| CTAGGATAAGTTCAAACTGT+AGG | - | chr8.3:79745339-79745358 | MS.gene39671:intron | 35.0% | |
| CTCAAATTTAACAGCTGACT+TGG | + | chr8.3:79745918-79745937 | None:intergenic | 35.0% | |
| CTTGTTTGAACCTTGTGATT+AGG | + | chr8.3:79746291-79746310 | None:intergenic | 35.0% | |
| GATAGCAAGATCTAACAACT+TGG | - | chr8.3:79747230-79747249 | MS.gene39671:intron | 35.0% | |
| GCAGTCTTGAAATAATCACT+AGG | - | chr8.3:79745321-79745340 | MS.gene39671:intron | 35.0% | |
| GCCAATTACAGAATACCTTA+CGG | + | chr8.3:79745822-79745841 | None:intergenic | 35.0% | |
| GGACCTGAAACAAATACAAA+AGG | + | chr8.3:79746028-79746047 | None:intergenic | 35.0% | |
| TCACTTATTTGCATTCCATG+CGG | - | chr8.3:79747661-79747680 | MS.gene39671:intron | 35.0% | |
| TCAGCAGTGTTGTCAAATAT+CGG | + | chr8.3:79746562-79746581 | None:intergenic | 35.0% | |
| TCCACAAGTTAAGAACTATG+TGG | + | chr8.3:79747408-79747427 | None:intergenic | 35.0% | |
| TCTAATCTAATCAGCCCAAA+AGG | + | chr8.3:79746700-79746719 | None:intergenic | 35.0% | |
| TCTCGATAATAAGGGAACAT+CGG | + | chr8.3:79745570-79745589 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGTAGAAA+AGG | - | chr8.3:79746111-79746130 | MS.gene39671:intron | 35.0% | |
| TGCTATTGTAAACTGGGAAT+TGG | + | chr8.3:79746363-79746382 | None:intergenic | 35.0% | |
| TTTGAAGAGGAACTCTTTGA+AGG | - | chr8.3:79744907-79744926 | MS.gene39671:intron | 35.0% | |
| ! | AACTTGGAAGTCTCTTTTGT+TGG | - | chr8.3:79747246-79747265 | MS.gene39671:intron | 35.0% |
| ! | ACTTGGAAGTCTCTTTTGTT+GGG | - | chr8.3:79747247-79747266 | MS.gene39671:intron | 35.0% |
| ! | AGCTTTTACATTTTCAGCCT+CGG | + | chr8.3:79746063-79746082 | None:intergenic | 35.0% |
| ! | AGGACACCCTAATTTTACAA+TGG | - | chr8.3:79746238-79746257 | MS.gene39671:intron | 35.0% |
| ! | CATGTAAGAAGGTATAGACT+AGG | - | chr8.3:79745645-79745664 | MS.gene39671:intron | 35.0% |
| ! | GATTTGTTTGTAGGGATCAT+TGG | - | chr8.3:79745372-79745391 | MS.gene39671:intron | 35.0% |
| ! | GTATTTGAGCAAGTGCTATT+TGG | - | chr8.3:79748000-79748019 | MS.gene39671:CDS | 35.0% |
| ! | TAAACTGGGAATTGGAGTTT+TGG | + | chr8.3:79746355-79746374 | None:intergenic | 35.0% |
| ! | TAGTTGACTCAGATTCTGAA+AGG | - | chr8.3:79746218-79746237 | MS.gene39671:intron | 35.0% |
| ! | TCCACATAGTTCTTAACTTG+TGG | - | chr8.3:79747404-79747423 | MS.gene39671:intron | 35.0% |
| ! | TCCGTAAGGTATTCTGTAAT+TGG | - | chr8.3:79745818-79745837 | MS.gene39671:intron | 35.0% |
| ! | TGTTAGATCTTGCTATCACA+AGG | + | chr8.3:79747227-79747246 | None:intergenic | 35.0% |
| ! | TTGTTTCAGGTCCTAAATGT+TGG | - | chr8.3:79746035-79746054 | MS.gene39671:intron | 35.0% |
| !! | CAATTTTGAAGAAGCGGATA+AGG | + | chr8.3:79747333-79747352 | None:intergenic | 35.0% |
| !! | GTTGTTTTGTCAGTGAAAAC+AGG | - | chr8.3:79745540-79745559 | MS.gene39671:intron | 35.0% |
| !!! | GGTATGTTTCAGTTTTGAAG+AGG | - | chr8.3:79744894-79744913 | MS.gene39671:intron | 35.0% |
| !!! | TGGTCTAATTGTTTTTCAGG+TGG | - | chr8.3:79748136-79748155 | MS.gene39671:intron | 35.0% |
| !!! | TTGTTTTTCAGGTGGATTTG+GGG | - | chr8.3:79748144-79748163 | MS.gene39671:CDS | 35.0% |
| AAACAAGTAACCATGAACCC+TGG | - | chr8.3:79746304-79746323 | MS.gene39671:intron | 40.0% | |
| AATCTAATCAGCCCAAAAGG+TGG | + | chr8.3:79746697-79746716 | None:intergenic | 40.0% | |
| ACACAAATTCGTCTGCTGAA+GGG | + | chr8.3:79747476-79747495 | None:intergenic | 40.0% | |
| ACTAAGCTGTATCACATTGG+TGG | - | chr8.3:79745471-79745490 | MS.gene39671:intron | 40.0% | |
| AGACCTTTGGACTTAAACGT+TGG | - | chr8.3:79746657-79746676 | MS.gene39671:intron | 40.0% | |
| ATATCTGCTGAAATTGGGCA+TGG | - | chr8.3:79746499-79746518 | MS.gene39671:intron | 40.0% | |
| ATCTAATCAGCCCAAAAGGT+GGG | + | chr8.3:79746696-79746715 | None:intergenic | 40.0% | |
| ATGCCCAATTTCAGCAGATA+TGG | + | chr8.3:79746500-79746519 | None:intergenic | 40.0% | |
| CAAAGGTCTTCTGTTTGAGA+GGG | + | chr8.3:79746646-79746665 | None:intergenic | 40.0% | |
| CAAGCTGATGACATTCAATG+AGG | + | chr8.3:79745516-79745535 | None:intergenic | 40.0% | |
| CACCGACATAAATGCTTATG+AGG | - | chr8.3:79747868-79747887 | MS.gene39671:intron | 40.0% | |
| CACTTATTTGCATTCCATGC+GGG | - | chr8.3:79747662-79747681 | MS.gene39671:intron | 40.0% | |
| CCGATATTCAATGTGGTCTA+TGG | - | chr8.3:79746393-79746412 | MS.gene39671:intron | 40.0% | |
| CTCATTGAATGTCATCAGCT+TGG | - | chr8.3:79745514-79745533 | MS.gene39671:intron | 40.0% | |
| CTGCCATATCTGCTGAAATT+GGG | - | chr8.3:79746494-79746513 | MS.gene39671:intron | 40.0% | |
| GAATTATACTTGGGAGTCTC+TGG | + | chr8.3:79744794-79744813 | None:intergenic | 40.0% | |
| GAGCTTCAACCAACAGATTT+GGG | + | chr8.3:79746602-79746621 | None:intergenic | 40.0% | |
| GAGGCTGAAAATGTAAAAGC+TGG | - | chr8.3:79746062-79746081 | MS.gene39671:intron | 40.0% | |
| TAAGAAATGGGAACCCTCTA+AGG | - | chr8.3:79744943-79744962 | MS.gene39671:intron | 40.0% | |
| TAGGGTTCTTATTCGTCTTG+AGG | - | chr8.3:79745079-79745098 | MS.gene39671:intron | 40.0% | |
| TCAAACTGTAGGCTGAATGT+TGG | - | chr8.3:79745350-79745369 | MS.gene39671:intron | 40.0% | |
| TGACACGGTACAACATCAAA+CGG | + | chr8.3:79745411-79745430 | None:intergenic | 40.0% | |
| TGAGCTTCAACCAACAGATT+TGG | + | chr8.3:79746603-79746622 | None:intergenic | 40.0% | |
| TGTCCAACGTTTAAGTCCAA+AGG | + | chr8.3:79746663-79746682 | None:intergenic | 40.0% | |
| TGTTGGTATGGTGAGAAATG+TGG | + | chr8.3:79744730-79744749 | None:intergenic | 40.0% | |
| ! | AGATATCAGTGGGGGTTTTT+GGG | + | chr8.3:79746532-79746551 | None:intergenic | 40.0% |
| ! | CTTGGAAGTCTCTTTTGTTG+GGG | - | chr8.3:79747248-79747267 | MS.gene39671:intron | 40.0% |
| ! | CTTTTCTCAAGAAAGCAGTG+TGG | + | chr8.3:79748052-79748071 | None:intergenic | 40.0% |
| ! | TGTTGGTTGAAGCTCATAGA+TGG | - | chr8.3:79746607-79746626 | MS.gene39671:intron | 40.0% |
| !! | AAATGTAAAAGCTGGCTCGA+AGG | - | chr8.3:79746070-79746089 | MS.gene39671:intron | 40.0% |
| !!! | TTTTTTGGGCAGAAAACTGC+TGG | - | chr8.3:79745878-79745897 | MS.gene39671:intron | 40.0% |
| AAGGAAGGGAGTTGTTGGTA+TGG | + | chr8.3:79744742-79744761 | None:intergenic | 45.0% | |
| ACCAATAACTCCAGGGTTCA+TGG | + | chr8.3:79746317-79746336 | None:intergenic | 45.0% | |
| ACCATGAACCCTGGAGTTAT+TGG | - | chr8.3:79746313-79746332 | MS.gene39671:intron | 45.0% | |
| AGACTGCAGACACCAAACAT+TGG | + | chr8.3:79745308-79745327 | None:intergenic | 45.0% | |
| ATAAGAACCCTATCAGCCTG+AGG | + | chr8.3:79745071-79745090 | None:intergenic | 45.0% | |
| CCAAAGGTCTTCTGTTTGAG+AGG | + | chr8.3:79746647-79746666 | None:intergenic | 45.0% | |
| CCAATTTCAGCAGATATGGC+AGG | + | chr8.3:79746496-79746515 | None:intergenic | 45.0% | |
| CCTAAGCTGCTCATAACACA+CGG | - | chr8.3:79746947-79746966 | MS.gene39671:intron | 45.0% | |
| CCTCTCAAACAGAAGACCTT+TGG | - | chr8.3:79746644-79746663 | MS.gene39671:intron | 45.0% | |
| CCTGCCATATCTGCTGAAAT+TGG | - | chr8.3:79746493-79746512 | MS.gene39671:intron | 45.0% | |
| GACACAAATTCGTCTGCTGA+AGG | + | chr8.3:79747477-79747496 | None:intergenic | 45.0% | |
| GACGCCGTCATTTCAGATTA+CGG | - | chr8.3:79746462-79746481 | MS.gene39671:intron | 45.0% | |
| GTGTTGTCAAATATCGGCCA+TGG | + | chr8.3:79746556-79746575 | None:intergenic | 45.0% | |
| TAAACGTTGGACAATGCCAC+TGG | - | chr8.3:79746670-79746689 | MS.gene39671:intron | 45.0% | |
| TACACGTTCGTTGAGCCTTA+AGG | + | chr8.3:79746802-79746821 | None:intergenic | 45.0% | |
| TATACTTGGGAGTCTCTGGT+TGG | + | chr8.3:79744790-79744809 | None:intergenic | 45.0% | |
| TCTCAAGAAAGCAGTGTGGT+TGG | + | chr8.3:79748048-79748067 | None:intergenic | 45.0% | |
| TCTCTGGTTGGAGAAAGAAG+CGG | + | chr8.3:79744778-79744797 | None:intergenic | 45.0% | |
| TTGTGAAGGAAGGGAGTTGT+TGG | + | chr8.3:79744747-79744766 | None:intergenic | 45.0% | |
| TTGTTGGGGTGAGGATTCAT+TGG | - | chr8.3:79747262-79747281 | MS.gene39671:intron | 45.0% | |
| ! | AAGTCTCTTTTGTTGGGGTG+AGG | - | chr8.3:79747253-79747272 | MS.gene39671:intron | 45.0% |
| ! | CAGATATCAGTGGGGGTTTT+TGG | + | chr8.3:79746533-79746552 | None:intergenic | 45.0% |
| ! | GTGGGGTTTTTGTGAAGGAA+GGG | + | chr8.3:79744756-79744775 | None:intergenic | 45.0% |
| ! | TCCGCCGTAATCTGAAATGA+CGG | + | chr8.3:79746469-79746488 | None:intergenic | 45.0% |
| !! | CATTAATAAATAATAAATAT+TGG | - | chr8.3:79748116-79748135 | MS.gene39671:intron | 5.0% |
| !! | TTATGATTATAATTTAAATA+TGG | + | chr8.3:79747826-79747845 | None:intergenic | 5.0% |
| !! | TTCAAAAAAAAATTTAAATA+TGG | + | chr8.3:79747795-79747814 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAACTAATTTTTT+TGG | + | chr8.3:79745133-79745152 | None:intergenic | 5.0% |
| AGTTTAGGTGTGTTGGGCTC+CGG | - | chr8.3:79746753-79746772 | MS.gene39671:intron | 50.0% | |
| CCGTGTGTTATGAGCAGCTT+AGG | + | chr8.3:79746950-79746969 | None:intergenic | 50.0% | |
| GCCGTCATTTCAGATTACGG+CGG | - | chr8.3:79746465-79746484 | MS.gene39671:intron | 50.0% | |
| GGCTCAACGAACGTGTACAA+CGG | - | chr8.3:79746805-79746824 | MS.gene39671:intron | 50.0% | |
| TCTGCTGAAATTGGGCATGG+CGG | - | chr8.3:79746502-79746521 | MS.gene39671:intron | 50.0% | |
| TGGTTGGAGAAAGAAGCGGT+GGG | + | chr8.3:79744774-79744793 | None:intergenic | 50.0% | |
| TTTGCATTCCATGCGGGTAG+TGG | - | chr8.3:79747668-79747687 | MS.gene39671:intron | 50.0% | |
| TTTGGGCAGAAAACTGCTGG+TGG | - | chr8.3:79745881-79745900 | MS.gene39671:intron | 50.0% | |
| ! | AAGCGGTGGGGTTTTTGTGA+AGG | + | chr8.3:79744761-79744780 | None:intergenic | 50.0% |
| ! | GGTGGGGTTTTTGTGAAGGA+AGG | + | chr8.3:79744757-79744776 | None:intergenic | 50.0% |
| ACCCCCACTGATATCTGCCA+TGG | - | chr8.3:79746536-79746555 | MS.gene39671:intron | 55.0% | |
| AGGTTGTGCCTCAGGCTGAT+AGG | - | chr8.3:79745060-79745079 | MS.gene39671:CDS | 55.0% | |
| ATGTGGTCTATGGCGGTCCA+TGG | - | chr8.3:79746403-79746422 | MS.gene39671:intron | 55.0% | |
| CAGCCTCGGCACCAACATTT+AGG | + | chr8.3:79746049-79746068 | None:intergenic | 55.0% | |
| CGGCCATGGCAGATATCAGT+GGG | + | chr8.3:79746542-79746561 | None:intergenic | 55.0% | |
| CTGGTTGGAGAAAGAAGCGG+TGG | + | chr8.3:79744775-79744794 | None:intergenic | 55.0% | |
| GACCAAAGAGTCCTCACGCT+GGG | - | chr8.3:79746843-79746862 | MS.gene39671:intron | 55.0% | |
| GCCATGGCAGATATCAGTGG+GGG | + | chr8.3:79746540-79746559 | None:intergenic | 55.0% | |
| GGCCATGGCAGATATCAGTG+GGG | + | chr8.3:79746541-79746560 | None:intergenic | 55.0% | |
| GGTTGGAGAAAGAAGCGGTG+GGG | + | chr8.3:79744773-79744792 | None:intergenic | 55.0% | |
| GGTTGTGCCTCAGGCTGATA+GGG | - | chr8.3:79745061-79745080 | MS.gene39671:CDS | 55.0% | |
| TCGGCCATGGCAGATATCAG+TGG | + | chr8.3:79746543-79746562 | None:intergenic | 55.0% | |
| TGACCAAAGAGTCCTCACGC+TGG | - | chr8.3:79746842-79746861 | MS.gene39671:intron | 55.0% | |
| TGGATTGCAGGTTGTGCCTC+AGG | - | chr8.3:79745052-79745071 | MS.gene39671:intron | 55.0% | |
| ! | AATGCCACTGGCCCACCTTT+TGG | - | chr8.3:79746682-79746701 | MS.gene39671:intron | 55.0% |
| ! | ATGCCACTGGCCCACCTTTT+GGG | - | chr8.3:79746683-79746702 | MS.gene39671:intron | 55.0% |
| !! | GGTCCTAAATGTTGGTGCCG+AGG | - | chr8.3:79746043-79746062 | MS.gene39671:intron | 55.0% |
| AAGAGTCCTCACGCTGGGAG+CGG | - | chr8.3:79746848-79746867 | MS.gene39671:intron | 60.0% | |
| ACAAAGCGACCGGCATGGCA+GGG | + | chr8.3:79746442-79746461 | None:intergenic | 60.0% | |
| CAGGGTCAAGGCAGGCCTTA+AGG | - | chr8.3:79746784-79746803 | MS.gene39671:intron | 60.0% | |
| CTCCCAGCGTGAGGACTCTT+TGG | + | chr8.3:79746848-79746867 | None:intergenic | 60.0% | |
| CTTAAGGCCTGCCTTGACCC+TGG | + | chr8.3:79746786-79746805 | None:intergenic | 60.0% | |
| TATATCCCGCTCCCAGCGTG+AGG | + | chr8.3:79746857-79746876 | None:intergenic | 60.0% | |
| TGACGGCGTCACAAAGCGAC+CGG | + | chr8.3:79746452-79746471 | None:intergenic | 60.0% | |
| TTAGGTGTGTTGGGCTCCGG+AGG | - | chr8.3:79746756-79746775 | MS.gene39671:intron | 60.0% | |
| ! | ATGCGGGTAGTGGTGTGCAG+GGG | - | chr8.3:79747678-79747697 | MS.gene39671:intron | 60.0% |
| ! | CATGCGGGTAGTGGTGTGCA+GGG | - | chr8.3:79747677-79747696 | MS.gene39671:intron | 60.0% |
| ! | CATGGCAGGGTCTTGGCTCT+CGG | + | chr8.3:79746429-79746448 | None:intergenic | 60.0% |
| AGAGTCCTCACGCTGGGAGC+GGG | - | chr8.3:79746849-79746868 | MS.gene39671:intron | 65.0% | |
| AGGCTCACCAGGGTCAAGGC+AGG | - | chr8.3:79746776-79746795 | MS.gene39671:intron | 65.0% | |
| CACAAAGCGACCGGCATGGC+AGG | + | chr8.3:79746443-79746462 | None:intergenic | 65.0% | |
| CAGCCCAAAAGGTGGGCCAG+TGG | + | chr8.3:79746689-79746708 | None:intergenic | 65.0% | |
| CCTGCACACCACTACCCGCA+TGG | + | chr8.3:79747679-79747698 | None:intergenic | 65.0% | |
| CCTTGACCCTGGTGAGCCTC+CGG | + | chr8.3:79746775-79746794 | None:intergenic | 65.0% | |
| GAGCCAAGACCCTGCCATGC+CGG | - | chr8.3:79746430-79746449 | MS.gene39671:intron | 65.0% | |
| GCGTCACAAAGCGACCGGCA+TGG | + | chr8.3:79746447-79746466 | None:intergenic | 65.0% | |
| ! | AGGGTCTTGGCTCTCGGCCA+TGG | + | chr8.3:79746423-79746442 | None:intergenic | 65.0% |
| ! | CCATGCGGGTAGTGGTGTGC+AGG | - | chr8.3:79747676-79747695 | MS.gene39671:intron | 65.0% |
| CCGGAGGCTCACCAGGGTCA+AGG | - | chr8.3:79746772-79746791 | MS.gene39671:intron | 70.0% | |
| CGACCGGCATGGCAGGGTCT+TGG | + | chr8.3:79746436-79746455 | None:intergenic | 70.0% | |
| TGGGCTCCGGAGGCTCACCA+GGG | - | chr8.3:79746766-79746785 | MS.gene39671:intron | 70.0% | |
| TTGGGCTCCGGAGGCTCACC+AGG | - | chr8.3:79746765-79746784 | MS.gene39671:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79744720 | 79748223 | 79744720 | ID=MS.gene39671 |
| chr8.3 | mRNA | 79744720 | 79748223 | 79744720 | ID=MS.gene39671.t1;Parent=MS.gene39671 |
| chr8.3 | exon | 79748139 | 79748223 | 79748139 | ID=MS.gene39671.t1.exon1;Parent=MS.gene39671.t1 |
| chr8.3 | CDS | 79748139 | 79748223 | 79748139 | ID=cds.MS.gene39671.t1;Parent=MS.gene39671.t1 |
| chr8.3 | exon | 79747979 | 79748037 | 79747979 | ID=MS.gene39671.t1.exon2;Parent=MS.gene39671.t1 |
| chr8.3 | CDS | 79747979 | 79748037 | 79747979 | ID=cds.MS.gene39671.t1;Parent=MS.gene39671.t1 |
| chr8.3 | exon | 79747831 | 79747881 | 79747831 | ID=MS.gene39671.t1.exon3;Parent=MS.gene39671.t1 |
| chr8.3 | CDS | 79747831 | 79747881 | 79747831 | ID=cds.MS.gene39671.t1;Parent=MS.gene39671.t1 |
| chr8.3 | exon | 79746988 | 79747053 | 79746988 | ID=MS.gene39671.t1.exon4;Parent=MS.gene39671.t1 |
| chr8.3 | CDS | 79746988 | 79747053 | 79746988 | ID=cds.MS.gene39671.t1;Parent=MS.gene39671.t1 |
| chr8.3 | exon | 79746852 | 79746899 | 79746852 | ID=MS.gene39671.t1.exon5;Parent=MS.gene39671.t1 |
| chr8.3 | CDS | 79746852 | 79746899 | 79746852 | ID=cds.MS.gene39671.t1;Parent=MS.gene39671.t1 |
| chr8.3 | exon | 79745054 | 79745083 | 79745054 | ID=MS.gene39671.t1.exon6;Parent=MS.gene39671.t1 |
| chr8.3 | CDS | 79745054 | 79745083 | 79745054 | ID=cds.MS.gene39671.t1;Parent=MS.gene39671.t1 |
| chr8.3 | exon | 79744720 | 79744788 | 79744720 | ID=MS.gene39671.t1.exon7;Parent=MS.gene39671.t1 |
| chr8.3 | CDS | 79744720 | 79744788 | 79744720 | ID=cds.MS.gene39671.t1;Parent=MS.gene39671.t1 |
| Gene Sequence |
| Protein sequence |
