Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022688.t1 | XP_003626805.1 | 97.8 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 3.00E-65 | 257.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022688.t1 | Q9M1C2 | 60.4 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 8.4e-40 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022688.t1 | G7LDE7 | 97.8 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 2.2e-65 | 257.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051663 | MS.gene022688 | PPI |
| MS.gene24780 | MS.gene022688 | PPI |
| MS.gene065342 | MS.gene022688 | PPI |
| MS.gene022688 | MS.gene25661 | PPI |
| MS.gene022688 | MS.gene012188 | PPI |
| MS.gene022688 | MS.gene66497 | PPI |
| MS.gene24778 | MS.gene022688 | PPI |
| MS.gene66498 | MS.gene022688 | PPI |
| MS.gene022688 | MS.gene25664 | PPI |
| MS.gene022688 | MS.gene24509 | PPI |
| MS.gene022688 | MS.gene037125 | PPI |
| MS.gene022688 | MS.gene057439 | PPI |
| MS.gene051662 | MS.gene022688 | PPI |
| MS.gene022688 | MS.gene24508 | PPI |
| MS.gene022688 | MS.gene00537 | PPI |
| MS.gene022688 | MS.gene24776 | PPI |
| MS.gene022688 | MS.gene00538 | PPI |
| MS.gene25264 | MS.gene022688 | PPI |
| MS.gene26688 | MS.gene022688 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022688.t1 | MTR_8g009280 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 1.13e-94 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022688.t1 | AT3G60210 | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.29e-56 | 171 |
| MS.gene022688.t1 | AT2G44650 | 58.273 | 139 | 54 | 2 | 1 | 135 | 1 | 139 | 2.68e-53 | 164 |
Find 36 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCTCGGCACCAACATTT+AGG | 0.253224 | 8.4:+78721830 | None:intergenic |
| TAAGAAATGGGAACCCTCTA+AGG | 0.340240 | 8.4:-78722931 | MS.gene022688:intron |
| AGGTTGTGCCTCAGGCTGAT+AGG | 0.348377 | 8.4:-78722814 | MS.gene022688:CDS |
| CATTAAATCAAGTGACTTGT+TGG | 0.348829 | 8.4:-78719689 | MS.gene022688:CDS |
| AGAAATTGGAATAACCTTAG+AGG | 0.365531 | 8.4:+78722917 | None:intergenic |
| TTAATGCAATTGCTAAGAAA+TGG | 0.381136 | 8.4:-78722944 | MS.gene022688:CDS |
| GAATTATACTTGGGAGTCTC+TGG | 0.395066 | 8.4:+78723083 | None:intergenic |
| CTCAAATTTAACAGCTGACT+TGG | 0.404760 | 8.4:+78721961 | None:intergenic |
| TGGATTGCAGGTTGTGCCTC+AGG | 0.408276 | 8.4:-78722822 | MS.gene022688:intron |
| CACCGACATAAATGCTTATG+AGG | 0.413729 | 8.4:-78720008 | MS.gene022688:intron |
| CTTGTTGGCCGTCGTTGAGT+AGG | 0.414558 | 8.4:-78719674 | None:intergenic |
| TTGTGAAGGAAGGGAGTTGT+TGG | 0.416342 | 8.4:+78723130 | None:intergenic |
| TTTGAAGAGGAACTCTTTGA+AGG | 0.442390 | 8.4:-78722967 | MS.gene022688:CDS |
| TAATGCAATTGCTAAGAAAT+GGG | 0.473150 | 8.4:-78722943 | MS.gene022688:CDS |
| GGTTGTGCCTCAGGCTGATA+GGG | 0.488435 | 8.4:-78722813 | MS.gene022688:CDS |
| TTGTTTCAGGTCCTAAATGT+TGG | 0.499652 | 8.4:-78721841 | MS.gene022688:intron |
| TTGTTGGCCGTCGTTGAGTA+GGG | 0.502146 | 8.4:-78719673 | None:intergenic |
| AAATTTGAGCGATATCTTGT+GGG | 0.511491 | 8.4:-78721947 | MS.gene022688:CDS |
| GAAATTGGAATAACCTTAGA+GGG | 0.512239 | 8.4:+78722918 | None:intergenic |
| TAAATTTGAGCGATATCTTG+TGG | 0.516085 | 8.4:-78721948 | MS.gene022688:CDS |
| TAGGGTTCTTATTCGTCTTG+AGG | 0.524050 | 8.4:-78722795 | MS.gene022688:CDS |
| TCAAATTTAACAGCTGACTT+GGG | 0.548423 | 8.4:+78721962 | None:intergenic |
| TGTTGGTATGGTGAGAAATG+TGG | 0.554797 | 8.4:+78723147 | None:intergenic |
| GAGGCTGAAAATGTAAAAGC+TGG | 0.554966 | 8.4:-78721814 | MS.gene022688:CDS |
| TATACTTGGGAGTCTCTGGT+TGG | 0.556109 | 8.4:+78723087 | None:intergenic |
| CTGGTTGGAGAAAGAAGCGG+TGG | 0.589531 | 8.4:+78723102 | None:intergenic |
| TTTGGGCAGAAAACTGCTGG+TGG | 0.594539 | 8.4:-78721995 | MS.gene022688:intron |
| AAGGAAGGGAGTTGTTGGTA+TGG | 0.597282 | 8.4:+78723135 | None:intergenic |
| AAATGTAAAAGCTGGCTCGA+AGG | 0.601859 | 8.4:-78721806 | MS.gene022688:intron |
| GGTCCTAAATGTTGGTGCCG+AGG | 0.613958 | 8.4:-78721833 | MS.gene022688:CDS |
| GGTTGGAGAAAGAAGCGGTG+GGG | 0.659685 | 8.4:+78723104 | None:intergenic |
| AACCTCATAAGCATTTATGT+CGG | 0.663411 | 8.4:+78720006 | None:intergenic |
| GGCCAAACCCTACTCAACGA+CGG | 0.678555 | 8.4:+78719666 | None:intergenic |
| TGGTTGGAGAAAGAAGCGGT+GGG | 0.681233 | 8.4:+78723103 | None:intergenic |
| ATAAGAACCCTATCAGCCTG+AGG | 0.720606 | 8.4:+78722806 | None:intergenic |
| TCTCTGGTTGGAGAAAGAAG+CGG | 0.732198 | 8.4:+78723099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTAATTT+GGG | - | chr8.4:78720099-78720118 | MS.gene022688:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTTAATT+TGG | - | chr8.4:78720098-78720117 | MS.gene022688:intron | 0.0% |
| !!! | TATTAACTTTTTTTTCATTT+GGG | - | chr8.4:78719828-78719847 | MS.gene022688:intron | 10.0% |
| !! | ATAACAATAAGTTATATGTA+TGG | + | chr8.4:78720665-78720684 | None:intergenic | 15.0% |
| !! | ATATTTGTACTTATGTATAA+AGG | - | chr8.4:78722858-78722877 | MS.gene022688:intron | 15.0% |
| !! | TTAAATGAATTAATCAATGT+CGG | - | chr8.4:78722892-78722911 | MS.gene022688:intron | 15.0% |
| !!! | GATTGTGAATATAATTTTTT+GGG | - | chr8.4:78720817-78720836 | MS.gene022688:intron | 15.0% |
| !!! | GTATTAACTTTTTTTTCATT+TGG | - | chr8.4:78719827-78719846 | MS.gene022688:intron | 15.0% |
| !!! | TATGATTTTTGGTTATTTTT+TGG | - | chr8.4:78719987-78720006 | MS.gene022688:intron | 15.0% |
| !!! | TGATTGTGAATATAATTTTT+TGG | - | chr8.4:78720816-78720835 | MS.gene022688:intron | 15.0% |
| !! | AAATAAAGGAAAATAGTTAG+TGG | - | chr8.4:78722685-78722704 | MS.gene022688:intron | 20.0% |
| !! | ACTTCGTTAAAATGAATAAA+AGG | + | chr8.4:78719809-78719828 | None:intergenic | 20.0% |
| !! | CTTCGTTAAAATGAATAAAA+GGG | + | chr8.4:78719808-78719827 | None:intergenic | 20.0% |
| !! | TAGTTCAAATGATGAAATAA+AGG | - | chr8.4:78722671-78722690 | MS.gene022688:intron | 20.0% |
| !! | TTACTAATTAATTAGTTGTG+AGG | - | chr8.4:78721871-78721890 | MS.gene022688:intron | 20.0% |
| !! | TTGTTTATTTACTATGAAAG+AGG | - | chr8.4:78721050-78721069 | MS.gene022688:intron | 20.0% |
| !! | TTTGTAATATGAGATATTTC+AGG | - | chr8.4:78722038-78722057 | MS.gene022688:intron | 20.0% |
| !!! | AATCATAATTATTCTTTTGC+AGG | - | chr8.4:78722791-78722810 | MS.gene022688:CDS | 20.0% |
| !!! | AATCATTATGGTAATTTGTT+GGG | - | chr8.4:78722122-78722141 | MS.gene022688:intron | 20.0% |
| !!! | AATTCTAATTTGTAACTCAA+CGG | - | chr8.4:78723036-78723055 | MS.gene022688:intron | 20.0% |
| !!! | AATTTTTTTGGATAAGATTG+TGG | + | chr8.4:78720076-78720095 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGCATATGATTTT+TGG | - | chr8.4:78719976-78719995 | MS.gene022688:intron | 20.0% |
| ! | AGACATTAGTTCAATCATTA+TGG | - | chr8.4:78722110-78722129 | MS.gene022688:intron | 25.0% |
| ! | AGTAAGTATACATATTGCAT+AGG | - | chr8.4:78720908-78720927 | MS.gene022688:intron | 25.0% |
| ! | AGTAGAAGAAGAATTATACT+TGG | + | chr8.4:78719759-78719778 | None:intergenic | 25.0% |
| ! | ATTATATTCACAATCATGCA+TGG | + | chr8.4:78720812-78720831 | None:intergenic | 25.0% |
| ! | CAGAAAATGAAAAGAGAAAT+TGG | + | chr8.4:78719929-78719948 | None:intergenic | 25.0% |
| ! | GTAGAAGAAGAATTATACTT+GGG | + | chr8.4:78719758-78719777 | None:intergenic | 25.0% |
| ! | GTGAATGTGATTTAACTATT+TGG | - | chr8.4:78720706-78720725 | MS.gene022688:intron | 25.0% |
| ! | TAAATTACCGATATTCAATG+TGG | - | chr8.4:78721339-78721358 | MS.gene022688:intron | 25.0% |
| ! | TAATGCAATTGCTAAGAAAT+GGG | - | chr8.4:78719886-78719905 | MS.gene022688:intron | 25.0% |
| ! | TATGAACAAGTTCATAACTT+GGG | + | chr8.4:78722400-78722419 | None:intergenic | 25.0% |
| ! | TGTAATTGGCACTTATAAAT+TGG | - | chr8.4:78720785-78720804 | MS.gene022688:intron | 25.0% |
| ! | TTAATGCAATTGCTAAGAAA+TGG | - | chr8.4:78719885-78719904 | MS.gene022688:intron | 25.0% |
| ! | TTATGAACAAGTTCATAACT+TGG | + | chr8.4:78722401-78722420 | None:intergenic | 25.0% |
| ! | TTATTTGTACAGTATCTATC+TGG | - | chr8.4:78722334-78722353 | MS.gene022688:intron | 25.0% |
| ! | TTCAGATGTAAAACAACATA+AGG | + | chr8.4:78720936-78720955 | None:intergenic | 25.0% |
| !! | ACTTTTAGCAATGAAAGTTT+AGG | - | chr8.4:78721691-78721710 | MS.gene022688:intron | 25.0% |
| !! | CAATCATTATGGTAATTTGT+TGG | - | chr8.4:78722121-78722140 | MS.gene022688:intron | 25.0% |
| !! | CAATTTCTCTTTTCATTTTC+TGG | - | chr8.4:78719927-78719946 | MS.gene022688:intron | 25.0% |
| !! | GTCTAAACTTGATAATATAG+AGG | - | chr8.4:78722580-78722599 | MS.gene022688:intron | 25.0% |
| !! | TTAAGTTGCTATTGTAAACT+GGG | + | chr8.4:78721322-78721341 | None:intergenic | 25.0% |
| !! | TTGTGTCTAAAGAAATTTTC+AGG | - | chr8.4:78722443-78722462 | MS.gene022688:intron | 25.0% |
| !! | TTTCCTTTTGTATTTGTTTC+AGG | - | chr8.4:78720975-78720994 | MS.gene022688:intron | 25.0% |
| !!! | ATAACACAATTTTGAAGAAG+CGG | + | chr8.4:78722292-78722311 | None:intergenic | 25.0% |
| !!! | ATTTTTTAAGAACCACATTC+GGG | - | chr8.4:78722490-78722509 | MS.gene022688:intron | 25.0% |
| !!! | CATTTTTTAAGAACCACATT+CGG | - | chr8.4:78722489-78722508 | MS.gene022688:intron | 25.0% |
| !!! | TATTGGTCTAATTGTTTTTC+AGG | - | chr8.4:78723086-78723105 | MS.gene022688:intron | 25.0% |
| !!! | TCTGGTTTTTTGTTTTTGAA+AGG | - | chr8.4:78719945-78719964 | MS.gene022688:intron | 25.0% |
| !!! | TTTAAGTTGCTATTGTAAAC+TGG | + | chr8.4:78721323-78721342 | None:intergenic | 25.0% |
| AAAACTAAGCTGTATCACAT+TGG | - | chr8.4:78720422-78720441 | MS.gene022688:intron | 30.0% | |
| AAATTTGAGCGATATCTTGT+GGG | - | chr8.4:78720882-78720901 | MS.gene022688:intron | 30.0% | |
| AACACATCAAATTCATGACA+CGG | + | chr8.4:78720380-78720399 | None:intergenic | 30.0% | |
| AACCTCATAAGCATTTATGT+CGG | + | chr8.4:78722826-78722845 | None:intergenic | 30.0% | |
| AATGAAAGTTTAGGTGTGTT+GGG | - | chr8.4:78721700-78721719 | MS.gene022688:intron | 30.0% | |
| ACTCATTAATCAAATGACCA+TGG | - | chr8.4:78722531-78722550 | MS.gene022688:intron | 30.0% | |
| AGAAATTGGAATAACCTTAG+AGG | + | chr8.4:78719915-78719934 | None:intergenic | 30.0% | |
| ATTTCATTACCAATAACTCC+AGG | + | chr8.4:78721278-78721297 | None:intergenic | 30.0% | |
| CAAAGTGATAATAGAAACCA+TGG | + | chr8.4:78722551-78722570 | None:intergenic | 30.0% | |
| CAATGAGGATATATCAGATT+AGG | + | chr8.4:78720455-78720474 | None:intergenic | 30.0% | |
| CACACTTAAATATGATGAGA+AGG | - | chr8.4:78721848-78721867 | MS.gene022688:intron | 30.0% | |
| GAAATTGGAATAACCTTAGA+GGG | + | chr8.4:78719914-78719933 | None:intergenic | 30.0% | |
| TAAATTTGAGCGATATCTTG+TGG | - | chr8.4:78720881-78720900 | MS.gene022688:intron | 30.0% | |
| TACTCATAAGTCATGTAAGA+AGG | - | chr8.4:78720587-78720606 | MS.gene022688:intron | 30.0% | |
| TATAATAAGTATCCCGAATG+TGG | + | chr8.4:78722505-78722524 | None:intergenic | 30.0% | |
| TGACATAAATCCTAATCACA+AGG | - | chr8.4:78721231-78721250 | MS.gene022688:intron | 30.0% | |
| TGCAGTTATCTCGATAATAA+GGG | + | chr8.4:78720532-78720551 | None:intergenic | 30.0% | |
| TGCTTGCCATTGTAAAATTA+GGG | + | chr8.4:78721200-78721219 | None:intergenic | 30.0% | |
| TGTCATGAATTTGATGTGTT+TGG | - | chr8.4:78720380-78720399 | MS.gene022688:intron | 30.0% | |
| TTGCAGTTATCTCGATAATA+AGG | + | chr8.4:78720533-78720552 | None:intergenic | 30.0% | |
| TTGCTTGCCATTGTAAAATT+AGG | + | chr8.4:78721201-78721220 | None:intergenic | 30.0% | |
| TTTCATTACCAATAACTCCA+GGG | + | chr8.4:78721277-78721296 | None:intergenic | 30.0% | |
| ! | AATGTGATGCAACATTTTTG+AGG | - | chr8.4:78722063-78722082 | MS.gene022688:intron | 30.0% |
| ! | ATCTGAAGAACAACTTTTGT+GGG | - | chr8.4:78722928-78722947 | MS.gene022688:intron | 30.0% |
| ! | ATGTAAGAAGGTATAGACTA+GGG | - | chr8.4:78720599-78720618 | MS.gene022688:intron | 30.0% |
| ! | CATTAAATCAAGTGACTTGT+TGG | - | chr8.4:78723140-78723159 | MS.gene022688:CDS | 30.0% |
| ! | GAATGTTGGATTTGTTTGTA+GGG | - | chr8.4:78720318-78720337 | MS.gene022688:intron | 30.0% |
| ! | TATCTGAAGAACAACTTTTG+TGG | - | chr8.4:78722927-78722946 | MS.gene022688:intron | 30.0% |
| ! | TCAAATTTAACAGCTGACTT+GGG | + | chr8.4:78720870-78720889 | None:intergenic | 30.0% |
| ! | TGAATGTTGGATTTGTTTGT+AGG | - | chr8.4:78720317-78720336 | MS.gene022688:intron | 30.0% |
| !! | AATTTTGAAGAAGCGGATAA+GGG | + | chr8.4:78722285-78722304 | None:intergenic | 30.0% |
| !! | ATTTTGCTATAATGTCCGTA+AGG | - | chr8.4:78720757-78720776 | MS.gene022688:intron | 30.0% |
| !! | CTTGTTATTGTTCCAATGTT+TGG | - | chr8.4:78720247-78720266 | MS.gene022688:intron | 30.0% |
| !!! | AATTGTTTTTCAGGTGGATT+TGG | - | chr8.4:78723095-78723114 | MS.gene022688:CDS | 30.0% |
| !!! | ATTGTTTTTCAGGTGGATTT+GGG | - | chr8.4:78723096-78723115 | MS.gene022688:CDS | 30.0% |
| !!! | TGTTATTTTGCAACTCTGTT+TGG | - | chr8.4:78722306-78722325 | MS.gene022688:intron | 30.0% |
| !!! | TTGGTTATTTTTTGGATTGC+AGG | - | chr8.4:78719995-78720014 | MS.gene022688:intron | 30.0% |
| AAAATCATACGAGCACTAAG+TGG | - | chr8.4:78722154-78722173 | MS.gene022688:intron | 35.0% | |
| AACAAGTTCATAACTTGGGA+AGG | + | chr8.4:78722396-78722415 | None:intergenic | 35.0% | |
| ACCAACAGATTTGGGAATAT+TGG | + | chr8.4:78721547-78721566 | None:intergenic | 35.0% | |
| ACCAATATTCCCAAATCTGT+TGG | - | chr8.4:78721543-78721562 | MS.gene022688:intron | 35.0% | |
| ATATTCAATGTGGTCTATGG+CGG | - | chr8.4:78721349-78721368 | MS.gene022688:intron | 35.0% | |
| CAATGAAAGTTTAGGTGTGT+TGG | - | chr8.4:78721699-78721718 | MS.gene022688:intron | 35.0% | |
| CCATAGACCACATTGAATAT+CGG | + | chr8.4:78721349-78721368 | None:intergenic | 35.0% | |
| CTAGGATAAGTTCAAACTGT+AGG | - | chr8.4:78720293-78720312 | MS.gene022688:intron | 35.0% | |
| CTCAAATTTAACAGCTGACT+TGG | + | chr8.4:78720871-78720890 | None:intergenic | 35.0% | |
| CTTGTTTGAACCTTGTGATT+AGG | + | chr8.4:78721244-78721263 | None:intergenic | 35.0% | |
| GATAGCAAGATCTAACAACT+TGG | - | chr8.4:78722183-78722202 | MS.gene022688:intron | 35.0% | |
| GCAGTCTTGAAATAATCACT+AGG | - | chr8.4:78720275-78720294 | MS.gene022688:intron | 35.0% | |
| GCCAATTACAGAATACCTTA+CGG | + | chr8.4:78720775-78720794 | None:intergenic | 35.0% | |
| GGACCTGAAACAAATACAAA+AGG | + | chr8.4:78720981-78721000 | None:intergenic | 35.0% | |
| TCACTTATTTGCATTCCATG+CGG | - | chr8.4:78722614-78722633 | MS.gene022688:intron | 35.0% | |
| TCAGCAGTGTTGTCAAATAT+CGG | + | chr8.4:78721515-78721534 | None:intergenic | 35.0% | |
| TCCACAAGTTAAGAACTATG+TGG | + | chr8.4:78722361-78722380 | None:intergenic | 35.0% | |
| TCTAATCTAATCAGCCCAAA+AGG | + | chr8.4:78721653-78721672 | None:intergenic | 35.0% | |
| TCTCGATAATAAGGGAACAT+CGG | + | chr8.4:78720524-78720543 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGTAGAAA+AGG | - | chr8.4:78721064-78721083 | MS.gene022688:intron | 35.0% | |
| TGCTATTGTAAACTGGGAAT+TGG | + | chr8.4:78721316-78721335 | None:intergenic | 35.0% | |
| TTTGAAGAGGAACTCTTTGA+AGG | - | chr8.4:78719862-78719881 | MS.gene022688:intron | 35.0% | |
| ! | AACTTGGAAGTCTCTTTTGT+TGG | - | chr8.4:78722199-78722218 | MS.gene022688:intron | 35.0% |
| ! | ACTTGGAAGTCTCTTTTGTT+GGG | - | chr8.4:78722200-78722219 | MS.gene022688:intron | 35.0% |
| ! | AGCTTTTACATTTTCAGCCT+CGG | + | chr8.4:78721016-78721035 | None:intergenic | 35.0% |
| ! | AGGACACCCTAATTTTACAA+TGG | - | chr8.4:78721191-78721210 | MS.gene022688:intron | 35.0% |
| ! | CATGTAAGAAGGTATAGACT+AGG | - | chr8.4:78720598-78720617 | MS.gene022688:intron | 35.0% |
| ! | GATTTGTTTGTAGGGATCAT+TGG | - | chr8.4:78720326-78720345 | MS.gene022688:intron | 35.0% |
| ! | GTATTTGAGCAAGTGCTATT+TGG | - | chr8.4:78722953-78722972 | MS.gene022688:CDS | 35.0% |
| ! | TAAACTGGGAATTGGAGTTT+TGG | + | chr8.4:78721308-78721327 | None:intergenic | 35.0% |
| ! | TAGTTGACTCAGATTCTGAA+AGG | - | chr8.4:78721171-78721190 | MS.gene022688:intron | 35.0% |
| ! | TCCACATAGTTCTTAACTTG+TGG | - | chr8.4:78722357-78722376 | MS.gene022688:intron | 35.0% |
| ! | TCCGTAAGGTATTCTGTAAT+TGG | - | chr8.4:78720771-78720790 | MS.gene022688:intron | 35.0% |
| ! | TGTTAGATCTTGCTATCACA+AGG | + | chr8.4:78722180-78722199 | None:intergenic | 35.0% |
| ! | TTGTTTCAGGTCCTAAATGT+TGG | - | chr8.4:78720988-78721007 | MS.gene022688:intron | 35.0% |
| !! | CAATTTTGAAGAAGCGGATA+AGG | + | chr8.4:78722286-78722305 | None:intergenic | 35.0% |
| !! | GTTGTTTTGTCAGTGAAAAC+AGG | - | chr8.4:78720494-78720513 | MS.gene022688:intron | 35.0% |
| !!! | GGTATGTTTCAGTTTTGAAG+AGG | - | chr8.4:78719849-78719868 | MS.gene022688:intron | 35.0% |
| !!! | TGGTCTAATTGTTTTTCAGG+TGG | - | chr8.4:78723089-78723108 | MS.gene022688:intron | 35.0% |
| !!! | TTGTTTTTCAGGTGGATTTG+GGG | - | chr8.4:78723097-78723116 | MS.gene022688:CDS | 35.0% |
| AAACAAGTAACCATGAACCC+TGG | - | chr8.4:78721257-78721276 | MS.gene022688:intron | 40.0% | |
| AATCTAATCAGCCCAAAAGG+TGG | + | chr8.4:78721650-78721669 | None:intergenic | 40.0% | |
| ACACAAATTCGTCTGCTGAA+GGG | + | chr8.4:78722429-78722448 | None:intergenic | 40.0% | |
| ACTAAGCTGTATCACATTGG+TGG | - | chr8.4:78720425-78720444 | MS.gene022688:intron | 40.0% | |
| AGACCTTTGGACTTAAACGT+TGG | - | chr8.4:78721610-78721629 | MS.gene022688:intron | 40.0% | |
| ATATCTGCTGAAATTGGGCA+TGG | - | chr8.4:78721452-78721471 | MS.gene022688:intron | 40.0% | |
| ATCTAATCAGCCCAAAAGGT+GGG | + | chr8.4:78721649-78721668 | None:intergenic | 40.0% | |
| ATGCCCAATTTCAGCAGATA+TGG | + | chr8.4:78721453-78721472 | None:intergenic | 40.0% | |
| CAAAGGTCTTCTGTTTGAGA+GGG | + | chr8.4:78721599-78721618 | None:intergenic | 40.0% | |
| CAAGCTGATGACATTCAATG+AGG | + | chr8.4:78720470-78720489 | None:intergenic | 40.0% | |
| CACCGACATAAATGCTTATG+AGG | - | chr8.4:78722821-78722840 | MS.gene022688:intron | 40.0% | |
| CACTTATTTGCATTCCATGC+GGG | - | chr8.4:78722615-78722634 | MS.gene022688:intron | 40.0% | |
| CCGATATTCAATGTGGTCTA+TGG | - | chr8.4:78721346-78721365 | MS.gene022688:intron | 40.0% | |
| CTCATTGAATGTCATCAGCT+TGG | - | chr8.4:78720468-78720487 | MS.gene022688:intron | 40.0% | |
| CTGCCATATCTGCTGAAATT+GGG | - | chr8.4:78721447-78721466 | MS.gene022688:intron | 40.0% | |
| GAATTATACTTGGGAGTCTC+TGG | + | chr8.4:78719749-78719768 | None:intergenic | 40.0% | |
| GAGCTTCAACCAACAGATTT+GGG | + | chr8.4:78721555-78721574 | None:intergenic | 40.0% | |
| GAGGCTGAAAATGTAAAAGC+TGG | - | chr8.4:78721015-78721034 | MS.gene022688:intron | 40.0% | |
| TAAGAAATGGGAACCCTCTA+AGG | - | chr8.4:78719898-78719917 | MS.gene022688:intron | 40.0% | |
| TAGGGTTCTTATTCGTCTTG+AGG | - | chr8.4:78720034-78720053 | MS.gene022688:intron | 40.0% | |
| TCAAACTGTAGGCTGAATGT+TGG | - | chr8.4:78720304-78720323 | MS.gene022688:intron | 40.0% | |
| TGACACGGTACAACATCAAA+CGG | + | chr8.4:78720365-78720384 | None:intergenic | 40.0% | |
| TGAGCTTCAACCAACAGATT+TGG | + | chr8.4:78721556-78721575 | None:intergenic | 40.0% | |
| TGTCCAACGTTTAAGTCCAA+AGG | + | chr8.4:78721616-78721635 | None:intergenic | 40.0% | |
| TGTTGGTATGGTGAGAAATG+TGG | + | chr8.4:78719685-78719704 | None:intergenic | 40.0% | |
| ! | AGATATCAGTGGGGGTTTTT+GGG | + | chr8.4:78721485-78721504 | None:intergenic | 40.0% |
| ! | CTTGGAAGTCTCTTTTGTTG+GGG | - | chr8.4:78722201-78722220 | MS.gene022688:intron | 40.0% |
| ! | CTTTTCTCAAGAAAGCAGTG+TGG | + | chr8.4:78723005-78723024 | None:intergenic | 40.0% |
| ! | TGTTGGTTGAAGCTCATAGA+TGG | - | chr8.4:78721560-78721579 | MS.gene022688:intron | 40.0% |
| !! | AAATGTAAAAGCTGGCTCGA+AGG | - | chr8.4:78721023-78721042 | MS.gene022688:intron | 40.0% |
| !!! | TTTTTTGGGCAGAAAACTGC+TGG | - | chr8.4:78720831-78720850 | MS.gene022688:intron | 40.0% |
| AAGGAAGGGAGTTGTTGGTA+TGG | + | chr8.4:78719697-78719716 | None:intergenic | 45.0% | |
| ACCAATAACTCCAGGGTTCA+TGG | + | chr8.4:78721270-78721289 | None:intergenic | 45.0% | |
| ACCATGAACCCTGGAGTTAT+TGG | - | chr8.4:78721266-78721285 | MS.gene022688:intron | 45.0% | |
| AGACTGCAGACACCAAACAT+TGG | + | chr8.4:78720262-78720281 | None:intergenic | 45.0% | |
| ATAAGAACCCTATCAGCCTG+AGG | + | chr8.4:78720026-78720045 | None:intergenic | 45.0% | |
| CCAAAGGTCTTCTGTTTGAG+AGG | + | chr8.4:78721600-78721619 | None:intergenic | 45.0% | |
| CCAATTTCAGCAGATATGGC+AGG | + | chr8.4:78721449-78721468 | None:intergenic | 45.0% | |
| CCTAAGCTGCTCATAACACA+CGG | - | chr8.4:78721900-78721919 | MS.gene022688:intron | 45.0% | |
| CCTCTCAAACAGAAGACCTT+TGG | - | chr8.4:78721597-78721616 | MS.gene022688:intron | 45.0% | |
| CCTGCCATATCTGCTGAAAT+TGG | - | chr8.4:78721446-78721465 | MS.gene022688:intron | 45.0% | |
| GACACAAATTCGTCTGCTGA+AGG | + | chr8.4:78722430-78722449 | None:intergenic | 45.0% | |
| GACGCCGTCATTTCAGATTA+CGG | - | chr8.4:78721415-78721434 | MS.gene022688:intron | 45.0% | |
| GTGTTGTCAAATATCGGCCA+TGG | + | chr8.4:78721509-78721528 | None:intergenic | 45.0% | |
| TAAACGTTGGACAATGCCAC+TGG | - | chr8.4:78721623-78721642 | MS.gene022688:intron | 45.0% | |
| TACACGTTCGTTGAGCCTTA+AGG | + | chr8.4:78721755-78721774 | None:intergenic | 45.0% | |
| TATACTTGGGAGTCTCTGGT+TGG | + | chr8.4:78719745-78719764 | None:intergenic | 45.0% | |
| TCTCAAGAAAGCAGTGTGGT+TGG | + | chr8.4:78723001-78723020 | None:intergenic | 45.0% | |
| TCTCTGGTTGGAGAAAGAAG+CGG | + | chr8.4:78719733-78719752 | None:intergenic | 45.0% | |
| TTGTGAAGGAAGGGAGTTGT+TGG | + | chr8.4:78719702-78719721 | None:intergenic | 45.0% | |
| TTGTTGGGGTGAGGATTCAT+TGG | - | chr8.4:78722215-78722234 | MS.gene022688:intron | 45.0% | |
| ! | AAGTCTCTTTTGTTGGGGTG+AGG | - | chr8.4:78722206-78722225 | MS.gene022688:intron | 45.0% |
| ! | CAGATATCAGTGGGGGTTTT+TGG | + | chr8.4:78721486-78721505 | None:intergenic | 45.0% |
| ! | GTGGGGTTTTTGTGAAGGAA+GGG | + | chr8.4:78719711-78719730 | None:intergenic | 45.0% |
| ! | TCCGCCGTAATCTGAAATGA+CGG | + | chr8.4:78721422-78721441 | None:intergenic | 45.0% |
| !! | CATTAATAAATAATAAATAT+TGG | - | chr8.4:78723069-78723088 | MS.gene022688:intron | 5.0% |
| !! | TTATGATTATAATTTAAATA+TGG | + | chr8.4:78722779-78722798 | None:intergenic | 5.0% |
| !! | TTCAAAAAAAAATTTAAATA+TGG | + | chr8.4:78722748-78722767 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAACTAATTTTTT+TGG | + | chr8.4:78720088-78720107 | None:intergenic | 5.0% |
| AGTTTAGGTGTGTTGGGCTC+CGG | - | chr8.4:78721706-78721725 | MS.gene022688:intron | 50.0% | |
| CCGTGTGTTATGAGCAGCTT+AGG | + | chr8.4:78721903-78721922 | None:intergenic | 50.0% | |
| GCCGTCATTTCAGATTACGG+CGG | - | chr8.4:78721418-78721437 | MS.gene022688:intron | 50.0% | |
| GGCTCAACGAACGTGTACAA+CGG | - | chr8.4:78721758-78721777 | MS.gene022688:intron | 50.0% | |
| TCTGCTGAAATTGGGCATGG+CGG | - | chr8.4:78721455-78721474 | MS.gene022688:intron | 50.0% | |
| TGGTTGGAGAAAGAAGCGGT+GGG | + | chr8.4:78719729-78719748 | None:intergenic | 50.0% | |
| TTTGCATTCCATGCGGGTAG+TGG | - | chr8.4:78722621-78722640 | MS.gene022688:intron | 50.0% | |
| TTTGGGCAGAAAACTGCTGG+TGG | - | chr8.4:78720834-78720853 | MS.gene022688:intron | 50.0% | |
| ! | AAGCGGTGGGGTTTTTGTGA+AGG | + | chr8.4:78719716-78719735 | None:intergenic | 50.0% |
| ! | GGTGGGGTTTTTGTGAAGGA+AGG | + | chr8.4:78719712-78719731 | None:intergenic | 50.0% |
| ACCCCCACTGATATCTGCCA+TGG | - | chr8.4:78721489-78721508 | MS.gene022688:intron | 55.0% | |
| AGGTTGTGCCTCAGGCTGAT+AGG | - | chr8.4:78720015-78720034 | MS.gene022688:CDS | 55.0% | |
| ATGTGGTCTATGGCGGTCCA+TGG | - | chr8.4:78721356-78721375 | MS.gene022688:intron | 55.0% | |
| CAGCCTCGGCACCAACATTT+AGG | + | chr8.4:78721002-78721021 | None:intergenic | 55.0% | |
| CGGCCATGGCAGATATCAGT+GGG | + | chr8.4:78721495-78721514 | None:intergenic | 55.0% | |
| CTGGTTGGAGAAAGAAGCGG+TGG | + | chr8.4:78719730-78719749 | None:intergenic | 55.0% | |
| GACCAAAGAGTCCTCACGCT+GGG | - | chr8.4:78721796-78721815 | MS.gene022688:intron | 55.0% | |
| GCCATGGCAGATATCAGTGG+GGG | + | chr8.4:78721493-78721512 | None:intergenic | 55.0% | |
| GGCCATGGCAGATATCAGTG+GGG | + | chr8.4:78721494-78721513 | None:intergenic | 55.0% | |
| GGTTGGAGAAAGAAGCGGTG+GGG | + | chr8.4:78719728-78719747 | None:intergenic | 55.0% | |
| GGTTGTGCCTCAGGCTGATA+GGG | - | chr8.4:78720016-78720035 | MS.gene022688:CDS | 55.0% | |
| TCGGCCATGGCAGATATCAG+TGG | + | chr8.4:78721496-78721515 | None:intergenic | 55.0% | |
| TGACCAAAGAGTCCTCACGC+TGG | - | chr8.4:78721795-78721814 | MS.gene022688:intron | 55.0% | |
| TGGATTGCAGGTTGTGCCTC+AGG | - | chr8.4:78720007-78720026 | MS.gene022688:intron | 55.0% | |
| ! | AATGCCACTGGCCCACCTTT+TGG | - | chr8.4:78721635-78721654 | MS.gene022688:intron | 55.0% |
| ! | ATGCCACTGGCCCACCTTTT+GGG | - | chr8.4:78721636-78721655 | MS.gene022688:intron | 55.0% |
| !! | GGTCCTAAATGTTGGTGCCG+AGG | - | chr8.4:78720996-78721015 | MS.gene022688:intron | 55.0% |
| AAGAGTCCTCACGCTGGGAG+CGG | - | chr8.4:78721801-78721820 | MS.gene022688:intron | 60.0% | |
| ACAAAGCGACCGGCATGGCA+GGG | + | chr8.4:78721395-78721414 | None:intergenic | 60.0% | |
| CAGGGTCAAGGCAGGCCTTA+AGG | - | chr8.4:78721737-78721756 | MS.gene022688:intron | 60.0% | |
| CTCCCAGCGTGAGGACTCTT+TGG | + | chr8.4:78721801-78721820 | None:intergenic | 60.0% | |
| CTTAAGGCCTGCCTTGACCC+TGG | + | chr8.4:78721739-78721758 | None:intergenic | 60.0% | |
| TATATCCCGCTCCCAGCGTG+AGG | + | chr8.4:78721810-78721829 | None:intergenic | 60.0% | |
| TGACGGCGTCACAAAGCGAC+CGG | + | chr8.4:78721405-78721424 | None:intergenic | 60.0% | |
| TTAGGTGTGTTGGGCTCCGG+AGG | - | chr8.4:78721709-78721728 | MS.gene022688:intron | 60.0% | |
| ! | ATGCGGGTAGTGGTGTGCAG+GGG | - | chr8.4:78722631-78722650 | MS.gene022688:intron | 60.0% |
| ! | CATGCGGGTAGTGGTGTGCA+GGG | - | chr8.4:78722630-78722649 | MS.gene022688:intron | 60.0% |
| ! | CATGGCAGGGTCTTGGCTCT+CGG | + | chr8.4:78721382-78721401 | None:intergenic | 60.0% |
| AGAGTCCTCACGCTGGGAGC+GGG | - | chr8.4:78721802-78721821 | MS.gene022688:intron | 65.0% | |
| AGGCTCACCAGGGTCAAGGC+AGG | - | chr8.4:78721729-78721748 | MS.gene022688:intron | 65.0% | |
| CACAAAGCGACCGGCATGGC+AGG | + | chr8.4:78721396-78721415 | None:intergenic | 65.0% | |
| CAGCCCAAAAGGTGGGCCAG+TGG | + | chr8.4:78721642-78721661 | None:intergenic | 65.0% | |
| CCTGCACACCACTACCCGCA+TGG | + | chr8.4:78722632-78722651 | None:intergenic | 65.0% | |
| CCTTGACCCTGGTGAGCCTC+CGG | + | chr8.4:78721728-78721747 | None:intergenic | 65.0% | |
| GAGCCAAGACCCTGCCATGC+CGG | - | chr8.4:78721383-78721402 | MS.gene022688:intron | 65.0% | |
| GCGTCACAAAGCGACCGGCA+TGG | + | chr8.4:78721400-78721419 | None:intergenic | 65.0% | |
| ! | AGGGTCTTGGCTCTCGGCCA+TGG | + | chr8.4:78721376-78721395 | None:intergenic | 65.0% |
| ! | CCATGCGGGTAGTGGTGTGC+AGG | - | chr8.4:78722629-78722648 | MS.gene022688:intron | 65.0% |
| CCGGAGGCTCACCAGGGTCA+AGG | - | chr8.4:78721725-78721744 | MS.gene022688:intron | 70.0% | |
| CGACCGGCATGGCAGGGTCT+TGG | + | chr8.4:78721389-78721408 | None:intergenic | 70.0% | |
| TGGGCTCCGGAGGCTCACCA+GGG | - | chr8.4:78721719-78721738 | MS.gene022688:intron | 70.0% | |
| TTGGGCTCCGGAGGCTCACC+AGG | - | chr8.4:78721718-78721737 | MS.gene022688:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 78719675 | 78723176 | 78719675 | ID=MS.gene022688 |
| chr8.4 | mRNA | 78719675 | 78723176 | 78719675 | ID=MS.gene022688.t1;Parent=MS.gene022688 |
| chr8.4 | exon | 78723092 | 78723176 | 78723092 | ID=MS.gene022688.t1.exon1;Parent=MS.gene022688.t1 |
| chr8.4 | CDS | 78723092 | 78723176 | 78723092 | ID=cds.MS.gene022688.t1;Parent=MS.gene022688.t1 |
| chr8.4 | exon | 78722932 | 78722990 | 78722932 | ID=MS.gene022688.t1.exon2;Parent=MS.gene022688.t1 |
| chr8.4 | CDS | 78722932 | 78722990 | 78722932 | ID=cds.MS.gene022688.t1;Parent=MS.gene022688.t1 |
| chr8.4 | exon | 78722784 | 78722834 | 78722784 | ID=MS.gene022688.t1.exon3;Parent=MS.gene022688.t1 |
| chr8.4 | CDS | 78722784 | 78722834 | 78722784 | ID=cds.MS.gene022688.t1;Parent=MS.gene022688.t1 |
| chr8.4 | exon | 78721943 | 78722008 | 78721943 | ID=MS.gene022688.t1.exon4;Parent=MS.gene022688.t1 |
| chr8.4 | CDS | 78721943 | 78722008 | 78721943 | ID=cds.MS.gene022688.t1;Parent=MS.gene022688.t1 |
| chr8.4 | exon | 78721807 | 78721854 | 78721807 | ID=MS.gene022688.t1.exon5;Parent=MS.gene022688.t1 |
| chr8.4 | CDS | 78721807 | 78721854 | 78721807 | ID=cds.MS.gene022688.t1;Parent=MS.gene022688.t1 |
| chr8.4 | exon | 78720009 | 78720038 | 78720009 | ID=MS.gene022688.t1.exon6;Parent=MS.gene022688.t1 |
| chr8.4 | CDS | 78720009 | 78720038 | 78720009 | ID=cds.MS.gene022688.t1;Parent=MS.gene022688.t1 |
| chr8.4 | exon | 78719675 | 78719743 | 78719675 | ID=MS.gene022688.t1.exon7;Parent=MS.gene022688.t1 |
| chr8.4 | CDS | 78719675 | 78719743 | 78719675 | ID=cds.MS.gene022688.t1;Parent=MS.gene022688.t1 |
| Gene Sequence |
| Protein sequence |
