Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013414.t1 | XP_013461532.1 | 100 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 8.40E-129 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013414.t1 | Q9M5M7 | 95.9 | 218 | 9 | 0 | 1 | 218 | 1 | 218 | 2.3e-122 | 439.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013414.t1 | A0A072V158 | 100.0 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 6.1e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05113 | MS.gene013414 | PPI |
| MS.gene013414 | MS.gene049386 | PPI |
| MS.gene049604 | MS.gene013414 | PPI |
| MS.gene043476 | MS.gene013414 | PPI |
| MS.gene53866 | MS.gene013414 | PPI |
| MS.gene059339 | MS.gene013414 | PPI |
| MS.gene31405 | MS.gene013414 | PPI |
| MS.gene028847 | MS.gene013414 | PPI |
| MS.gene013414 | MS.gene049604 | PPI |
| MS.gene06510 | MS.gene013414 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013414.t1 | MTR_3g094230 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 4.76e-169 | 464 |
| MS.gene013414.t1 | MTR_2g090910 | 98.649 | 222 | 3 | 0 | 1 | 222 | 1 | 222 | 1.29e-165 | 456 |
| MS.gene013414.t1 | MTR_3g062600 | 92.661 | 218 | 16 | 0 | 1 | 218 | 1 | 218 | 7.42e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013414.t1 | AT1G26910 | 89.450 | 218 | 23 | 0 | 1 | 218 | 1 | 218 | 2.18e-147 | 409 |
| MS.gene013414.t1 | AT1G14320 | 88.991 | 218 | 24 | 0 | 1 | 218 | 1 | 218 | 4.25e-146 | 406 |
| MS.gene013414.t1 | AT1G66580 | 87.671 | 219 | 27 | 0 | 1 | 219 | 1 | 219 | 1.70e-144 | 402 |
| MS.gene013414.t1 | AT1G26910 | 88.398 | 181 | 21 | 0 | 38 | 218 | 1 | 181 | 1.17e-118 | 335 |
| MS.gene013414.t1 | AT1G14320 | 77.660 | 94 | 19 | 1 | 127 | 218 | 31 | 124 | 1.58e-46 | 150 |
| MS.gene013414.t1 | AT1G14320 | 97.436 | 39 | 1 | 0 | 38 | 76 | 1 | 39 | 1.85e-20 | 84.0 |
Find 68 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTCCACTTGAGAGTT+AGG | 0.281116 | 3.3:+78404902 | MS.gene013414:CDS |
| TTCATCCATTCCATGTTCTT+AGG | 0.295164 | 3.3:+78404926 | MS.gene013414:CDS |
| ACTGGTATGAGAGGGGCTTT+TGG | 0.309142 | 3.3:+78404991 | MS.gene013414:CDS |
| CTTTGACATGTATTTGTTGC+AGG | 0.312261 | 3.3:-78404866 | None:intergenic |
| CAGAAACGTGACTTTGGATA+TGG | 0.332410 | 3.3:-78404700 | None:intergenic |
| GTTTCCTTTCTGTGTTCATC+TGG | 0.355959 | 3.3:+78404789 | MS.gene013414:CDS |
| CTGTGTTCATCTGGTCAGTT+GGG | 0.370061 | 3.3:+78404798 | MS.gene013414:CDS |
| ATTTGACGGTAACACCTTGC+AGG | 0.370519 | 3.3:-78404667 | None:intergenic |
| GCAGTCAGGAAAGCTCTTCC+AGG | 0.375435 | 3.3:-78405629 | None:intergenic |
| TCTGTGTTCATCTGGTCAGT+TGG | 0.393251 | 3.3:+78404797 | MS.gene013414:CDS |
| AACATCATAAATCCTGATCT+TGG | 0.406497 | 3.3:-78404740 | None:intergenic |
| TCACACCATCAGGCATAATT+CGG | 0.409368 | 3.3:-78405359 | None:intergenic |
| TTTGTGCTAGAGTGGCTATT+GGG | 0.420431 | 3.3:+78405028 | MS.gene013414:CDS |
| TTTCATGTGCGGGAGCTGAT+AGG | 0.426261 | 3.3:+78404962 | MS.gene013414:CDS |
| TTGCAGCTTCTTGGATGCCA+TGG | 0.430564 | 3.3:+78405587 | MS.gene013414:intron |
| TGCTAGAGTGGCTATTGGGC+AGG | 0.435686 | 3.3:+78405032 | MS.gene013414:CDS |
| GTTTGTGCTAGAGTGGCTAT+TGG | 0.453432 | 3.3:+78405027 | MS.gene013414:CDS |
| CATGTCAAAGTTTGCAGGAA+AGG | 0.453517 | 3.3:+78404879 | MS.gene013414:CDS |
| CAGCTGTAATGATGAGGCTT+AGG | 0.455136 | 3.3:+78405652 | MS.gene013414:CDS |
| TGCATTCCACTTGAGAGTTA+GGG | 0.456036 | 3.3:+78404903 | MS.gene013414:CDS |
| AGCAGCTTCAAGTGCCTCAC+TGG | 0.456981 | 3.3:-78404836 | None:intergenic |
| ATGGCTTGTTCTTAATTTGA+CGG | 0.461186 | 3.3:-78404681 | None:intergenic |
| CCACGGCAGAAACGTGACTT+TGG | 0.463875 | 3.3:-78404706 | None:intergenic |
| GGAAAGCTCTTCCAGGTTGA+CGG | 0.466465 | 3.3:-78405622 | None:intergenic |
| CATCATTACAGCTGGCAGTC+AGG | 0.468158 | 3.3:-78405643 | None:intergenic |
| AAATACATGTCAAAGTTTGC+AGG | 0.470834 | 3.3:+78404874 | MS.gene013414:CDS |
| ACCTTGGCATTCACACCATC+AGG | 0.473018 | 3.3:-78405369 | None:intergenic |
| TCTTCTTTCTGTTCGTTGCA+AGG | 0.480717 | 3.3:+78405056 | MS.gene013414:CDS |
| TAAATCCTGATCTTGGGATC+AGG | 0.483079 | 3.3:-78404733 | None:intergenic |
| ACATCATAAATCCTGATCTT+GGG | 0.486665 | 3.3:-78404739 | None:intergenic |
| TCTTGGATGCCATGGACCAT+TGG | 0.496449 | 3.3:+78405595 | MS.gene013414:CDS |
| CCATTGGCCAACCGTCAACC+TGG | 0.501077 | 3.3:+78405611 | MS.gene013414:CDS |
| AACAAGATGCTTTCATGTGC+GGG | 0.504380 | 3.3:+78404952 | MS.gene013414:CDS |
| GTGTTCCTGATCCCAAGATC+AGG | 0.511204 | 3.3:+78404728 | MS.gene013414:CDS |
| CGTGCTAAGTTCAAGTTCCC+TGG | 0.513242 | 3.3:+78405114 | MS.gene013414:CDS |
| CCAGGTTGACGGTTGGCCAA+TGG | 0.514937 | 3.3:-78405611 | None:intergenic |
| GTCAAAAGATCATTGTTAGC+AGG | 0.521890 | 3.3:+78405139 | MS.gene013414:CDS |
| CAACAACAGCCATCATGCTC+AGG | 0.528429 | 3.3:+78405080 | MS.gene013414:CDS |
| AGATCATTGTTAGCAGGAAG+TGG | 0.531763 | 3.3:+78405145 | MS.gene013414:CDS |
| CTAAGCCTCATCATTACAGC+TGG | 0.532221 | 3.3:-78405651 | None:intergenic |
| GACGGTTGGCCAATGGTCCA+TGG | 0.540431 | 3.3:-78405604 | None:intergenic |
| AAGATCAGGATTTATGATGT+TGG | 0.544933 | 3.3:+78404742 | MS.gene013414:CDS |
| GGAGAGCCTCCTGAGCATGA+TGG | 0.562150 | 3.3:-78405089 | None:intergenic |
| ACAAGGTGTTTGTGCTAGAG+TGG | 0.563189 | 3.3:+78405020 | MS.gene013414:CDS |
| GGCTTCAGACTGGTATGAGA+GGG | 0.563519 | 3.3:+78404983 | MS.gene013414:CDS |
| TCATCTGGTCAGTTGGGAGA+AGG | 0.572889 | 3.3:+78404804 | MS.gene013414:CDS |
| CTGACCAGATGAACACAGAA+AGG | 0.573863 | 3.3:-78404793 | None:intergenic |
| AGCTCTTCCAGGTTGACGGT+TGG | 0.574684 | 3.3:-78405618 | None:intergenic |
| GATGAACCCTAACTCTCAAG+TGG | 0.578245 | 3.3:-78404909 | None:intergenic |
| GATGTTGGTATGAAGAAGAA+AGG | 0.580932 | 3.3:+78404757 | MS.gene013414:CDS |
| CCAAAGTCACGTTTCTGCCG+TGG | 0.586608 | 3.3:+78404706 | MS.gene013414:CDS |
| GTGAGGCACTTGAAGCTGCT+AGG | 0.594487 | 3.3:+78404839 | MS.gene013414:CDS |
| CAACAAGATGCTTTCATGTG+CGG | 0.597854 | 3.3:+78404951 | MS.gene013414:CDS |
| TTGATCCTAAGAACATGGAA+TGG | 0.602625 | 3.3:-78404931 | None:intergenic |
| TTAACTTCAGATAATCAGCT+CGG | 0.606395 | 3.3:-78405326 | None:intergenic |
| AGGCTTCAGACTGGTATGAG+AGG | 0.607126 | 3.3:+78404982 | MS.gene013414:CDS |
| CAACAGCCATCATGCTCAGG+AGG | 0.612805 | 3.3:+78405083 | MS.gene013414:CDS |
| TCTTGTTGATCCTAAGAACA+TGG | 0.613434 | 3.3:-78404936 | None:intergenic |
| CAGGGAACTTGAACTTAGCA+CGG | 0.624584 | 3.3:-78405113 | None:intergenic |
| GACTGCCAGCTGTAATGATG+AGG | 0.627181 | 3.3:+78405646 | MS.gene013414:CDS |
| GGAGCTGATAGGCTTCAGAC+TGG | 0.660599 | 3.3:+78404973 | MS.gene013414:CDS |
| ACTCTAGCACAAACACCTTG+TGG | 0.661898 | 3.3:-78405018 | None:intergenic |
| GAGAACCGAATTATGCCTGA+TGG | 0.679163 | 3.3:+78405354 | MS.gene013414:CDS |
| GCCTGATGGTGTGAATGCCA+AGG | 0.685041 | 3.3:+78405368 | MS.gene013414:CDS |
| GCTTCAGACTGGTATGAGAG+GGG | 0.693964 | 3.3:+78404984 | MS.gene013414:CDS |
| GAAGGAAAATGTGTCCAGTG+AGG | 0.706232 | 3.3:+78404822 | MS.gene013414:CDS |
| TCTTGGGATCAGGAACACCA+CGG | 0.737353 | 3.3:-78404723 | None:intergenic |
| GGAACTTGAACTTAGCACGG+CGG | 0.787728 | 3.3:-78405110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAACAAATTATATATTTTT+AGG | - | chr3.3:78404070-78404089 | None:intergenic | 10.0% |
| !! | AAAAATGAAATAAGAATTCA+TGG | - | chr3.3:78403478-78403497 | None:intergenic | 15.0% |
| !! | TCGTAAATATAATGAAATTT+CGG | - | chr3.3:78403655-78403674 | None:intergenic | 15.0% |
| !! | TTTAACAAATTATGAAACAT+TGG | - | chr3.3:78403823-78403842 | None:intergenic | 15.0% |
| !!! | ATCATGTTTGTTTTATTTAT+AGG | + | chr3.3:78404643-78404662 | MS.gene013414:intron | 15.0% |
| !!! | ATTTTAGTTTGGAATATATT+GGG | + | chr3.3:78405454-78405473 | MS.gene013414:intron | 15.0% |
| !!! | TTATTTGTATCATTTTAGTT+TGG | + | chr3.3:78405443-78405462 | MS.gene013414:intron | 15.0% |
| !!! | TTATTTTGTATTTGTGATTT+AGG | + | chr3.3:78403606-78403625 | MS.gene013414:intron | 15.0% |
| !!! | TTTTATTTTCTGTTTTGATT+TGG | + | chr3.3:78403690-78403709 | MS.gene013414:intron | 15.0% |
| !! | AAATGAATGAAAATATGAGA+AGG | - | chr3.3:78403414-78403433 | None:intergenic | 20.0% |
| !! | AATGAATGAAAATATGAGAA+GGG | - | chr3.3:78403413-78403432 | None:intergenic | 20.0% |
| !! | ACCACTATAAAAAATCAAAA+AGG | - | chr3.3:78404259-78404278 | None:intergenic | 20.0% |
| !! | CAATGAATATAGTTAAAACA+TGG | - | chr3.3:78405268-78405287 | None:intergenic | 20.0% |
| !! | CCACTATAAAAAATCAAAAA+GGG | - | chr3.3:78404258-78404277 | None:intergenic | 20.0% |
| !! | CTAGTATTCATAATACATAA+TGG | + | chr3.3:78404401-78404420 | MS.gene013414:intron | 20.0% |
| !! | TAATGAACACAAATGAAAAT+AGG | - | chr3.3:78404470-78404489 | None:intergenic | 20.0% |
| !! | TATTTGTGATTTAGGAATTA+GGG | + | chr3.3:78403614-78403633 | MS.gene013414:intron | 20.0% |
| !! | TCATTATTCATTTGTAATTG+TGG | + | chr3.3:78404484-78404503 | MS.gene013414:intron | 20.0% |
| !!! | AAAACATGGATTAAAGTAAA+AGG | - | chr3.3:78405254-78405273 | None:intergenic | 20.0% |
| !!! | AACCAAATAAGTTTTGATTA+AGG | + | chr3.3:78403853-78403872 | MS.gene013414:intron | 20.0% |
| !!! | ACCAAATAAGTTTTGATTAA+GGG | + | chr3.3:78403854-78403873 | MS.gene013414:intron | 20.0% |
| !!! | AGATTCATTTTTTTGTCTAT+TGG | + | chr3.3:78404601-78404620 | MS.gene013414:intron | 20.0% |
| !!! | CATTTTAGTTTGGAATATAT+TGG | + | chr3.3:78405453-78405472 | MS.gene013414:intron | 20.0% |
| !!! | GGTTTTAAAAAAACATGTTA+AGG | - | chr3.3:78404237-78404256 | None:intergenic | 20.0% |
| ! | AAAAAACAAGCCAATTCAAA+CGG | + | chr3.3:78404042-78404061 | MS.gene013414:intron | 25.0% |
| ! | AAAATATGAGAAGGGAATTA+GGG | - | chr3.3:78403405-78403424 | None:intergenic | 25.0% |
| ! | AATCTGTTTGAACACTAAAT+TGG | + | chr3.3:78405499-78405518 | MS.gene013414:intron | 25.0% |
| ! | ACCCTTAATCAAAACTTATT+TGG | - | chr3.3:78403858-78403877 | None:intergenic | 25.0% |
| ! | GTATTTGTGATTTAGGAATT+AGG | + | chr3.3:78403613-78403632 | MS.gene013414:intron | 25.0% |
| ! | TTGAAAAAGAGATCAGAAAT+TGG | - | chr3.3:78403565-78403584 | None:intergenic | 25.0% |
| !! | AGATATGATGATGTTTACAT+TGG | + | chr3.3:78403503-78403522 | MS.gene013414:intron | 25.0% |
| !! | AGGTTTATACGATAATTTTG+TGG | + | chr3.3:78404129-78404148 | MS.gene013414:intron | 25.0% |
| !!! | CCCTTTTTGATTTTTTATAG+TGG | + | chr3.3:78404255-78404274 | MS.gene013414:intron | 25.0% |
| !!! | CTTGTTTTCATTTGTCATTA+TGG | + | chr3.3:78404559-78404578 | MS.gene013414:intron | 25.0% |
| !!! | GTTAGTTTTGTCTAAGTAAT+TGG | + | chr3.3:78405534-78405553 | MS.gene013414:intron | 25.0% |
| !!! | GTTGTTTAAATGCTTTTTCA+GGG | + | chr3.3:78405287-78405306 | MS.gene013414:intron | 25.0% |
| !!! | TGATTTTTTATAGTGGTAGA+CGG | + | chr3.3:78404262-78404281 | MS.gene013414:intron | 25.0% |
| !!! | TGTTGTTTAAATGCTTTTTC+AGG | + | chr3.3:78405286-78405305 | MS.gene013414:intron | 25.0% |
| !!! | TTGTTTAAATGCTTTTTCAG+GGG | + | chr3.3:78405288-78405307 | MS.gene013414:intron | 25.0% |
| AAATACATGTCAAAGTTTGC+AGG | + | chr3.3:78404874-78404893 | MS.gene013414:CDS | 30.0% | |
| AACATCATAAATCCTGATCT+TGG | - | chr3.3:78404743-78404762 | None:intergenic | 30.0% | |
| AAGATCAGGATTTATGATGT+TGG | + | chr3.3:78404742-78404761 | MS.gene013414:CDS | 30.0% | |
| ACAAATCTACATAGGATACA+GGG | - | chr3.3:78405213-78405232 | None:intergenic | 30.0% | |
| ACATAAAACACGACAAACAA+TGG | - | chr3.3:78404326-78404345 | None:intergenic | 30.0% | |
| ACATCATAAATCCTGATCTT+GGG | - | chr3.3:78404742-78404761 | None:intergenic | 30.0% | |
| AGAAACAAATATCCAACATG+CGG | - | chr3.3:78405424-78405443 | None:intergenic | 30.0% | |
| CAAACTTAAGCTAATCCAAA+CGG | - | chr3.3:78403881-78403900 | None:intergenic | 30.0% | |
| CCTATGTAGATTTGTAGTAT+GGG | + | chr3.3:78405218-78405237 | MS.gene013414:intron | 30.0% | |
| GAAAATATGAGAAGGGAATT+AGG | - | chr3.3:78403406-78403425 | None:intergenic | 30.0% | |
| GTGGTAAGTATTTGTTCTAT+TGG | + | chr3.3:78405164-78405183 | MS.gene013414:intron | 30.0% | |
| TACAAATCTACATAGGATAC+AGG | - | chr3.3:78405214-78405233 | None:intergenic | 30.0% | |
| TATGAGGATACAACTTTAGT+TGG | + | chr3.3:78403959-78403978 | MS.gene013414:intron | 30.0% | |
| TCCTATGTAGATTTGTAGTA+TGG | + | chr3.3:78405217-78405236 | MS.gene013414:intron | 30.0% | |
| TTAACTTCAGATAATCAGCT+CGG | - | chr3.3:78405329-78405348 | None:intergenic | 30.0% | |
| TTTGTAGTATGGGAATACTT+TGG | + | chr3.3:78405228-78405247 | MS.gene013414:intron | 30.0% | |
| ! | AAAAGAGCTTGTAAGTTGAA+AGG | - | chr3.3:78405560-78405579 | None:intergenic | 30.0% |
| ! | TGCTAACAATGATCTTTTGA+CGG | - | chr3.3:78405140-78405159 | None:intergenic | 30.0% |
| !! | ATGGCTTGTTCTTAATTTGA+CGG | - | chr3.3:78404684-78404703 | None:intergenic | 30.0% |
| !! | TTTTATTTATAGGACCTGCA+AGG | + | chr3.3:78404653-78404672 | MS.gene013414:intron | 30.0% |
| !!! | ATGCTTTTGAAATCGACATT+AGG | + | chr3.3:78404109-78404128 | MS.gene013414:intron | 30.0% |
| AAGAGATCAGAAATTGGAAG+AGG | - | chr3.3:78403559-78403578 | None:intergenic | 35.0% | |
| AAGCATGCTACGATACATAT+TGG | - | chr3.3:78404367-78404386 | None:intergenic | 35.0% | |
| ACATGTTAAGGTATGAAGAG+TGG | - | chr3.3:78404225-78404244 | None:intergenic | 35.0% | |
| CCCATACTACAAATCTACAT+AGG | - | chr3.3:78405221-78405240 | None:intergenic | 35.0% | |
| CTATGAGAAAACAGCTTATG+AGG | + | chr3.3:78403943-78403962 | MS.gene013414:intron | 35.0% | |
| GAACTAGCAAACAATGACAA+TGG | - | chr3.3:78404155-78404174 | None:intergenic | 35.0% | |
| GATGTTGGTATGAAGAAGAA+AGG | + | chr3.3:78404757-78404776 | MS.gene013414:CDS | 35.0% | |
| GTCAAAAGATCATTGTTAGC+AGG | + | chr3.3:78405139-78405158 | MS.gene013414:CDS | 35.0% | |
| TCTTGTTGATCCTAAGAACA+TGG | - | chr3.3:78404939-78404958 | None:intergenic | 35.0% | |
| TTAAGGTATGAAGAGTGGTT+AGG | - | chr3.3:78404220-78404239 | None:intergenic | 35.0% | |
| TTCATCCATTCCATGTTCTT+AGG | + | chr3.3:78404926-78404945 | MS.gene013414:CDS | 35.0% | |
| TTGATCCTAAGAACATGGAA+TGG | - | chr3.3:78404934-78404953 | None:intergenic | 35.0% | |
| ! | CTTTGACATGTATTTGTTGC+AGG | - | chr3.3:78404869-78404888 | None:intergenic | 35.0% |
| ! | GTTCTTGTGTATGGATTGTA+AGG | + | chr3.3:78404171-78404190 | MS.gene013414:intron | 35.0% |
| ! | TGTTTGCTAGTTCTTGTGTA+TGG | + | chr3.3:78404162-78404181 | MS.gene013414:intron | 35.0% |
| ! | TTTGTGATTTTGCAGCTTCT+TGG | + | chr3.3:78405578-78405597 | MS.gene013414:intron | 35.0% |
| !!! | TTTTTAGGGTCCGTTTGAAT+TGG | - | chr3.3:78404055-78404074 | None:intergenic | 35.0% |
| AACAAGATGCTTTCATGTGC+GGG | + | chr3.3:78404952-78404971 | MS.gene013414:CDS | 40.0% | |
| AGATCATTGTTAGCAGGAAG+TGG | + | chr3.3:78405145-78405164 | MS.gene013414:CDS | 40.0% | |
| ATGCATTCCACTTGAGAGTT+AGG | + | chr3.3:78404902-78404921 | MS.gene013414:CDS | 40.0% | |
| CAACAAGATGCTTTCATGTG+CGG | + | chr3.3:78404951-78404970 | MS.gene013414:CDS | 40.0% | |
| CAGAAACGTGACTTTGGATA+TGG | - | chr3.3:78404703-78404722 | None:intergenic | 40.0% | |
| CATGTCAAAGTTTGCAGGAA+AGG | + | chr3.3:78404879-78404898 | MS.gene013414:CDS | 40.0% | |
| GAATTCATTGTACCGCATGT+TGG | + | chr3.3:78405409-78405428 | MS.gene013414:intron | 40.0% | |
| GGTTGCTTATCGATGAATTC+AGG | + | chr3.3:78404192-78404211 | MS.gene013414:intron | 40.0% | |
| GTTTCCTTTCTGTGTTCATC+TGG | + | chr3.3:78404789-78404808 | MS.gene013414:CDS | 40.0% | |
| TAAATCCTGATCTTGGGATC+AGG | - | chr3.3:78404736-78404755 | None:intergenic | 40.0% | |
| TATGCAGCTTCACATTACCT+TGG | - | chr3.3:78405388-78405407 | None:intergenic | 40.0% | |
| TCACACCATCAGGCATAATT+CGG | - | chr3.3:78405362-78405381 | None:intergenic | 40.0% | |
| TCTTCTTTCTGTTCGTTGCA+AGG | + | chr3.3:78405056-78405075 | MS.gene013414:CDS | 40.0% | |
| TGCATTCCACTTGAGAGTTA+GGG | + | chr3.3:78404903-78404922 | MS.gene013414:CDS | 40.0% | |
| TTTATAGTGGTAGACGGTAG+TGG | + | chr3.3:78404268-78404287 | MS.gene013414:intron | 40.0% | |
| TTTGTGCTAGAGTGGCTATT+GGG | + | chr3.3:78405028-78405047 | MS.gene013414:CDS | 40.0% | |
| !!! | GTTTTGATTAAGGGTCCGTT+TGG | + | chr3.3:78403863-78403882 | MS.gene013414:intron | 40.0% |
| ACTCTAGCACAAACACCTTG+TGG | - | chr3.3:78405021-78405040 | None:intergenic | 45.0% | |
| ATTGGAAGAGGTTGTCTGTC+AGG | - | chr3.3:78403547-78403566 | None:intergenic | 45.0% | |
| ATTTGACGGTAACACCTTGC+AGG | - | chr3.3:78404670-78404689 | None:intergenic | 45.0% | |
| CAGGGAACTTGAACTTAGCA+CGG | - | chr3.3:78405116-78405135 | None:intergenic | 45.0% | |
| CTAAGCCTCATCATTACAGC+TGG | - | chr3.3:78405654-78405673 | None:intergenic | 45.0% | |
| CTGACCAGATGAACACAGAA+AGG | - | chr3.3:78404796-78404815 | None:intergenic | 45.0% | |
| CTGTGTTCATCTGGTCAGTT+GGG | + | chr3.3:78404798-78404817 | MS.gene013414:CDS | 45.0% | |
| GAAGGAAAATGTGTCCAGTG+AGG | + | chr3.3:78404822-78404841 | MS.gene013414:CDS | 45.0% | |
| GAGAACCGAATTATGCCTGA+TGG | + | chr3.3:78405354-78405373 | MS.gene013414:CDS | 45.0% | |
| GATGAACCCTAACTCTCAAG+TGG | - | chr3.3:78404912-78404931 | None:intergenic | 45.0% | |
| GTCAGGGTGAATCAGAAACA+CGG | - | chr3.3:78403530-78403549 | None:intergenic | 45.0% | |
| GTTTGTGCTAGAGTGGCTAT+TGG | + | chr3.3:78405027-78405046 | MS.gene013414:CDS | 45.0% | |
| TCTGTGTTCATCTGGTCAGT+TGG | + | chr3.3:78404797-78404816 | MS.gene013414:CDS | 45.0% | |
| TGGCTCATACAATACAAGCG+TGG | - | chr3.3:78404306-78404325 | None:intergenic | 45.0% | |
| TTGGAAGAGGTTGTCTGTCA+GGG | - | chr3.3:78403546-78403565 | None:intergenic | 45.0% | |
| ! | ACAAGGTGTTTGTGCTAGAG+TGG | + | chr3.3:78405020-78405039 | MS.gene013414:CDS | 45.0% |
| ! | ACAATGATCTTTTGACGGCC+AGG | - | chr3.3:78405135-78405154 | None:intergenic | 45.0% |
| ! | CAATGATCTTTTGACGGCCA+GGG | - | chr3.3:78405134-78405153 | None:intergenic | 45.0% |
| !!! | AAACAAATTATATATTTTTA+GGG | - | chr3.3:78404069-78404088 | None:intergenic | 5.0% |
| ACCTTGGCATTCACACCATC+AGG | - | chr3.3:78405372-78405391 | None:intergenic | 50.0% | |
| AGGCTTCAGACTGGTATGAG+AGG | + | chr3.3:78404982-78405001 | MS.gene013414:CDS | 50.0% | |
| CAACAACAGCCATCATGCTC+AGG | + | chr3.3:78405080-78405099 | MS.gene013414:CDS | 50.0% | |
| CATCATTACAGCTGGCAGTC+AGG | - | chr3.3:78405646-78405665 | None:intergenic | 50.0% | |
| GACTGCCAGCTGTAATGATG+AGG | + | chr3.3:78405646-78405665 | MS.gene013414:CDS | 50.0% | |
| GCTTCAGACTGGTATGAGAG+GGG | + | chr3.3:78404984-78405003 | MS.gene013414:CDS | 50.0% | |
| GGAACTTGAACTTAGCACGG+CGG | - | chr3.3:78405113-78405132 | None:intergenic | 50.0% | |
| GGCTTCAGACTGGTATGAGA+GGG | + | chr3.3:78404983-78405002 | MS.gene013414:CDS | 50.0% | |
| GTGTTCCTGATCCCAAGATC+AGG | + | chr3.3:78404728-78404747 | MS.gene013414:CDS | 50.0% | |
| TCATCTGGTCAGTTGGGAGA+AGG | + | chr3.3:78404804-78404823 | MS.gene013414:CDS | 50.0% | |
| TCTTGGATGCCATGGACCAT+TGG | + | chr3.3:78405595-78405614 | MS.gene013414:CDS | 50.0% | |
| TCTTGGGATCAGGAACACCA+CGG | - | chr3.3:78404726-78404745 | None:intergenic | 50.0% | |
| TTGCAGCTTCTTGGATGCCA+TGG | + | chr3.3:78405587-78405606 | MS.gene013414:intron | 50.0% | |
| TTTCATGTGCGGGAGCTGAT+AGG | + | chr3.3:78404962-78404981 | MS.gene013414:CDS | 50.0% | |
| ! | ACTGGTATGAGAGGGGCTTT+TGG | + | chr3.3:78404991-78405010 | MS.gene013414:CDS | 50.0% |
| ! | CGTGCTAAGTTCAAGTTCCC+TGG | + | chr3.3:78405114-78405133 | MS.gene013414:CDS | 50.0% |
| ! | GGAAAGCTCTTCCAGGTTGA+CGG | - | chr3.3:78405625-78405644 | None:intergenic | 50.0% |
| AGCAGCTTCAAGTGCCTCAC+TGG | - | chr3.3:78404839-78404858 | None:intergenic | 55.0% | |
| CAACAGCCATCATGCTCAGG+AGG | + | chr3.3:78405083-78405102 | MS.gene013414:CDS | 55.0% | |
| CCAAAGTCACGTTTCTGCCG+TGG | + | chr3.3:78404706-78404725 | MS.gene013414:CDS | 55.0% | |
| CCACGGCAGAAACGTGACTT+TGG | - | chr3.3:78404709-78404728 | None:intergenic | 55.0% | |
| GCAGTCAGGAAAGCTCTTCC+AGG | - | chr3.3:78405632-78405651 | None:intergenic | 55.0% | |
| GGAGCTGATAGGCTTCAGAC+TGG | + | chr3.3:78404973-78404992 | MS.gene013414:CDS | 55.0% | |
| TGCTAGAGTGGCTATTGGGC+AGG | + | chr3.3:78405032-78405051 | MS.gene013414:CDS | 55.0% | |
| ! | AGCTCTTCCAGGTTGACGGT+TGG | - | chr3.3:78405621-78405640 | None:intergenic | 55.0% |
| ! | GCCTGATGGTGTGAATGCCA+AGG | + | chr3.3:78405368-78405387 | MS.gene013414:CDS | 55.0% |
| ! | GTGAGGCACTTGAAGCTGCT+AGG | + | chr3.3:78404839-78404858 | MS.gene013414:CDS | 55.0% |
| !! | GGGGCTTTTGGAAAGCCACA+AGG | + | chr3.3:78405003-78405022 | MS.gene013414:CDS | 55.0% |
| CCATTGGCCAACCGTCAACC+TGG | + | chr3.3:78405611-78405630 | MS.gene013414:CDS | 60.0% | |
| GGAGAGCCTCCTGAGCATGA+TGG | - | chr3.3:78405092-78405111 | None:intergenic | 60.0% | |
| ! | CCAGGTTGACGGTTGGCCAA+TGG | - | chr3.3:78405614-78405633 | None:intergenic | 60.0% |
| ! | GACGGTTGGCCAATGGTCCA+TGG | - | chr3.3:78405607-78405626 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78403386 | 78405673 | 78403386 | ID=MS.gene013414 |
| chr3.3 | mRNA | 78403386 | 78405673 | 78403386 | ID=MS.gene013414.t1;Parent=MS.gene013414 |
| chr3.3 | exon | 78403386 | 78403395 | 78403386 | ID=MS.gene013414.t1.exon1;Parent=MS.gene013414.t1 |
| chr3.3 | CDS | 78403386 | 78403395 | 78403386 | ID=cds.MS.gene013414.t1;Parent=MS.gene013414.t1 |
| chr3.3 | exon | 78404665 | 78405166 | 78404665 | ID=MS.gene013414.t1.exon2;Parent=MS.gene013414.t1 |
| chr3.3 | CDS | 78404665 | 78405166 | 78404665 | ID=cds.MS.gene013414.t1;Parent=MS.gene013414.t1 |
| chr3.3 | exon | 78405308 | 78405389 | 78405308 | ID=MS.gene013414.t1.exon3;Parent=MS.gene013414.t1 |
| chr3.3 | CDS | 78405308 | 78405389 | 78405308 | ID=cds.MS.gene013414.t1;Parent=MS.gene013414.t1 |
| chr3.3 | exon | 78405593 | 78405673 | 78405593 | ID=MS.gene013414.t1.exon4;Parent=MS.gene013414.t1 |
| chr3.3 | CDS | 78405593 | 78405673 | 78405593 | ID=cds.MS.gene013414.t1;Parent=MS.gene013414.t1 |
| Gene Sequence |
| Protein sequence |
