Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06510.t1 | XP_013461532.1 | 99.5 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 2.70E-127 | 464.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06510.t1 | Q9M5M7 | 95.9 | 218 | 9 | 0 | 1 | 218 | 1 | 218 | 2.2e-122 | 439.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06510.t1 | A0A072V158 | 99.5 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 1.9e-127 | 464.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene06510 | 0.809758 | 1.62E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene06510 | 0.829325 | 5.48E-55 | -1.69E-46 |
| MS.gene05134 | MS.gene06510 | 0.801972 | 7.00E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene06510 | 0.818293 | 2.11E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene06510 | 0.835084 | 2.06E-56 | -1.69E-46 |
| MS.gene05364 | MS.gene06510 | 0.815668 | 8.22E-52 | -1.69E-46 |
| MS.gene05476 | MS.gene06510 | 0.804443 | 2.15E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene06510 | 0.80307 | 4.15E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene06510 | 0.815474 | 9.08E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene06510 | 0.830366 | 3.06E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene06510 | 0.806123 | 9.58E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene06510 | 0.805529 | 1.28E-49 | -1.69E-46 |
| MS.gene057694 | MS.gene06510 | 0.800846 | 1.19E-48 | -1.69E-46 |
| MS.gene057705 | MS.gene06510 | 0.836925 | 7.03E-57 | -1.69E-46 |
| MS.gene058852 | MS.gene06510 | 0.806959 | 6.39E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene06510 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene06510 | 0.841334 | 5.06E-58 | -1.69E-46 |
| MS.gene060917 | MS.gene06510 | 0.819338 | 1.22E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31405 | MS.gene06510 | PPI |
| MS.gene028847 | MS.gene06510 | PPI |
| MS.gene05113 | MS.gene06510 | PPI |
| MS.gene043476 | MS.gene06510 | PPI |
| MS.gene06510 | MS.gene049604 | PPI |
| MS.gene059339 | MS.gene06510 | PPI |
| MS.gene06510 | MS.gene049386 | PPI |
| MS.gene53866 | MS.gene06510 | PPI |
| MS.gene06510 | MS.gene013414 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06510.t1 | MTR_3g094230 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 5.06e-167 | 459 |
| MS.gene06510.t1 | MTR_2g090910 | 99.103 | 223 | 2 | 0 | 1 | 223 | 1 | 223 | 9.02e-167 | 458 |
| MS.gene06510.t1 | MTR_3g062600 | 92.661 | 218 | 16 | 0 | 1 | 218 | 1 | 218 | 1.17e-151 | 420 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06510.t1 | AT1G26910 | 89.450 | 218 | 23 | 0 | 1 | 218 | 1 | 218 | 2.10e-147 | 409 |
| MS.gene06510.t1 | AT1G14320 | 88.991 | 218 | 24 | 0 | 1 | 218 | 1 | 218 | 3.39e-146 | 406 |
| MS.gene06510.t1 | AT1G66580 | 87.671 | 219 | 27 | 0 | 1 | 219 | 1 | 219 | 1.80e-144 | 402 |
| MS.gene06510.t1 | AT1G26910 | 88.398 | 181 | 21 | 0 | 38 | 218 | 1 | 181 | 1.07e-118 | 335 |
| MS.gene06510.t1 | AT1G14320 | 77.660 | 94 | 19 | 1 | 127 | 218 | 31 | 124 | 1.46e-46 | 150 |
| MS.gene06510.t1 | AT1G14320 | 97.436 | 39 | 1 | 0 | 38 | 76 | 1 | 39 | 1.77e-20 | 84.0 |
Find 68 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTTTCCACTTGAGAGTT+AGG | 0.278634 | 3.2:+79005819 | MS.gene06510:CDS |
| TTCATCCATTCCATGTTCTT+AGG | 0.295164 | 3.2:+79005843 | MS.gene06510:CDS |
| ACTGGTATGAGAGGGGCTTT+TGG | 0.309142 | 3.2:+79005908 | MS.gene06510:CDS |
| CTTTGACATGTATTTGTTGC+AGG | 0.312261 | 3.2:-79005783 | None:intergenic |
| CAGAAACGTGACTTTGGATA+TGG | 0.332410 | 3.2:-79005617 | None:intergenic |
| ACCATTGGCCAACCGTCAAC+CGG | 0.355147 | 3.2:+79006553 | MS.gene06510:CDS |
| GTTTCCTTTCTGTGTTCATC+TGG | 0.355959 | 3.2:+79005706 | MS.gene06510:CDS |
| CTGTGTTCATCTGGTCAGTT+GGG | 0.370061 | 3.2:+79005715 | MS.gene06510:CDS |
| ATTTGACGGTAACACCTTGC+AGG | 0.370519 | 3.2:-79005584 | None:intergenic |
| AACATCATAAATCCTGATCT+TGG | 0.385450 | 3.2:-79005657 | None:intergenic |
| TCTGTGTTCATCTGGTCAGT+TGG | 0.393251 | 3.2:+79005714 | MS.gene06510:CDS |
| ATCAGGCATAATTCTGTTCT+CGG | 0.407151 | 3.2:-79006270 | None:intergenic |
| TTTGTGCTAGAGTGGCTATT+GGG | 0.420431 | 3.2:+79005945 | MS.gene06510:CDS |
| GCAGTCAGGAAAGCTCTTCC+CGG | 0.421225 | 3.2:-79006572 | None:intergenic |
| TTTCATGTGCGGGAGCTGAT+AGG | 0.426261 | 3.2:+79005879 | MS.gene06510:CDS |
| TTGCAGCTTCTTGGATGCCA+TGG | 0.430564 | 3.2:+79006530 | MS.gene06510:intron |
| TGCTAGAGTGGCTATTGGGC+AGG | 0.435686 | 3.2:+79005949 | MS.gene06510:CDS |
| TGCTTTCCACTTGAGAGTTA+GGG | 0.441216 | 3.2:+79005820 | MS.gene06510:CDS |
| GGAAAGCTCTTCCCGGTTGA+CGG | 0.444695 | 3.2:-79006565 | None:intergenic |
| GTTTGTGCTAGAGTGGCTAT+TGG | 0.453432 | 3.2:+79005944 | MS.gene06510:CDS |
| CATGTCAAAGTTTGCAGGAA+AGG | 0.453517 | 3.2:+79005796 | MS.gene06510:CDS |
| ACCTTAGCATTCACACCATC+AGG | 0.455380 | 3.2:-79006287 | None:intergenic |
| AGCAGCTTCAAGTGCCTCAC+TGG | 0.456981 | 3.2:-79005753 | None:intergenic |
| CCCGGTTGACGGTTGGCCAA+TGG | 0.460642 | 3.2:-79006554 | None:intergenic |
| ATGGCTTGTTCTTAATTTGA+CGG | 0.461186 | 3.2:-79005598 | None:intergenic |
| CCACGGCAGAAACGTGACTT+TGG | 0.463875 | 3.2:-79005623 | None:intergenic |
| CGTGCTAAGTTTAAGTTCCC+TGG | 0.464822 | 3.2:+79006031 | MS.gene06510:CDS |
| CCTCATTACAGCTGGCAGTC+AGG | 0.466220 | 3.2:-79006586 | None:intergenic |
| AAATACATGTCAAAGTTTGC+AGG | 0.470834 | 3.2:+79005791 | MS.gene06510:CDS |
| ACATCATAAATCCTGATCTT+GGG | 0.479634 | 3.2:-79005656 | None:intergenic |
| TCTTCTTTCTGTTCGTTGCA+AGG | 0.480717 | 3.2:+79005973 | MS.gene06510:CDS |
| TAAATCCTGATCTTGGGATC+AGG | 0.483079 | 3.2:-79005650 | None:intergenic |
| TGCCAGCTGTAATGAGGCTT+AGG | 0.494501 | 3.2:+79006592 | MS.gene06510:CDS |
| TCTTGGATGCCATGGACCAT+TGG | 0.496449 | 3.2:+79006538 | MS.gene06510:CDS |
| CCTGACTGCCAGCTGTAATG+AGG | 0.497594 | 3.2:+79006586 | MS.gene06510:CDS |
| AACAAGATGCTTTCATGTGC+GGG | 0.504380 | 3.2:+79005869 | MS.gene06510:CDS |
| AGCTCTTCCCGGTTGACGGT+TGG | 0.505552 | 3.2:-79006561 | None:intergenic |
| GTGTTCCTGATCCCAAGATC+AGG | 0.511204 | 3.2:+79005645 | MS.gene06510:CDS |
| GTCAAAAGATCATTGTTAGC+AGG | 0.521890 | 3.2:+79006056 | MS.gene06510:CDS |
| CAACAACAGCCATCATGCTC+AGG | 0.528429 | 3.2:+79005997 | MS.gene06510:CDS |
| AGATCATTGTTAGCAGGAAG+TGG | 0.531763 | 3.2:+79006062 | MS.gene06510:CDS |
| AGCCTAAGCCTCATTACAGC+TGG | 0.535691 | 3.2:-79006594 | None:intergenic |
| GACGGTTGGCCAATGGTCCA+TGG | 0.540431 | 3.2:-79006547 | None:intergenic |
| AAGATCAGGATTTATGATGT+TGG | 0.540872 | 3.2:+79005659 | MS.gene06510:CDS |
| ACAAGGTGTTTGTGCTAGAG+TGG | 0.563189 | 3.2:+79005937 | MS.gene06510:CDS |
| GGCTTCAGACTGGTATGAGA+GGG | 0.563519 | 3.2:+79005900 | MS.gene06510:CDS |
| CCATTGGCCAACCGTCAACC+GGG | 0.565470 | 3.2:+79006554 | MS.gene06510:CDS |
| TCATCTGGTCAGTTGGGAGA+AGG | 0.572889 | 3.2:+79005721 | MS.gene06510:CDS |
| GGAGAGCCTCCTGAGCATGA+TGG | 0.573200 | 3.2:-79006006 | None:intergenic |
| CTGACCAGATGAACACAGAA+AGG | 0.573863 | 3.2:-79005710 | None:intergenic |
| GATGAACCCTAACTCTCAAG+TGG | 0.578245 | 3.2:-79005826 | None:intergenic |
| CCAAAGTCACGTTTCTGCCG+TGG | 0.586608 | 3.2:+79005623 | MS.gene06510:CDS |
| GTGAGGCACTTGAAGCTGCT+AGG | 0.594487 | 3.2:+79005756 | MS.gene06510:CDS |
| CAACAAGATGCTTTCATGTG+CGG | 0.597854 | 3.2:+79005868 | MS.gene06510:CDS |
| GATGTTGGCATGAAGAAGAA+AGG | 0.601420 | 3.2:+79005674 | MS.gene06510:CDS |
| TTGATCCTAAGAACATGGAA+TGG | 0.602625 | 3.2:-79005848 | None:intergenic |
| TTAACTTCAGATAATCAGCT+CGG | 0.606395 | 3.2:-79006244 | None:intergenic |
| AGGCTTCAGACTGGTATGAG+AGG | 0.607126 | 3.2:+79005899 | MS.gene06510:CDS |
| CAACAGCCATCATGCTCAGG+AGG | 0.612805 | 3.2:+79006000 | MS.gene06510:CDS |
| TCTTGTTGATCCTAAGAACA+TGG | 0.613434 | 3.2:-79005853 | None:intergenic |
| GCCTGATGGTGTGAATGCTA+AGG | 0.639133 | 3.2:+79006286 | MS.gene06510:CDS |
| GAGAACAGAATTATGCCTGA+TGG | 0.652808 | 3.2:+79006272 | MS.gene06510:CDS |
| GGAGCTGATAGGCTTCAGAC+TGG | 0.660599 | 3.2:+79005890 | MS.gene06510:CDS |
| ACTCTAGCACAAACACCTTG+TGG | 0.661898 | 3.2:-79005935 | None:intergenic |
| GCTTCAGACTGGTATGAGAG+GGG | 0.693964 | 3.2:+79005901 | MS.gene06510:CDS |
| GAAGGAAAATGTGTCCAGTG+AGG | 0.706232 | 3.2:+79005739 | MS.gene06510:CDS |
| GGAACTTAAACTTAGCACGA+CGG | 0.721521 | 3.2:-79006027 | None:intergenic |
| TCTTGGGATCAGGAACACCA+CGG | 0.737353 | 3.2:-79005640 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAACAAATTATATATTTA+GGG | - | chr3.2:79005081-79005100 | None:intergenic | 10.0% |
| !! | AAAAATGAAATAAGAATTCA+TGG | - | chr3.2:79004491-79004510 | None:intergenic | 15.0% |
| !! | ACCACTATAAAAAATAAAAA+GGG | - | chr3.2:79005268-79005287 | None:intergenic | 15.0% |
| !! | CTGAAACAAATTATATATTT+AGG | - | chr3.2:79005082-79005101 | None:intergenic | 15.0% |
| !! | TACCACTATAAAAAATAAAA+AGG | - | chr3.2:79005269-79005288 | None:intergenic | 15.0% |
| !! | TTTAACAAATTATGAAACAT+TGG | - | chr3.2:79004835-79004854 | None:intergenic | 15.0% |
| !!! | ATCATGTTTGTTTTATTTAT+AGG | + | chr3.2:79005560-79005579 | MS.gene06510:intron | 15.0% |
| !!! | TTATTTTGTATTTGTGATTT+AGG | + | chr3.2:79004618-79004637 | MS.gene06510:intron | 15.0% |
| !!! | TTTTATTTTCTGTTTTGATT+TGG | + | chr3.2:79004702-79004721 | MS.gene06510:intron | 15.0% |
| !! | AAATGAATGAAAATATGAGA+AGG | - | chr3.2:79004427-79004446 | None:intergenic | 20.0% |
| !! | AATGAATGAAAATATGAGAA+GGG | - | chr3.2:79004426-79004445 | None:intergenic | 20.0% |
| !! | CAATGAATATAGTTAAAACA+TGG | - | chr3.2:79006185-79006204 | None:intergenic | 20.0% |
| !! | TATTTGTGATTTAGGAATTA+GGG | + | chr3.2:79004626-79004645 | MS.gene06510:intron | 20.0% |
| !!! | AAAAAGAACTTTAAGTTGAA+AGG | - | chr3.2:79006504-79006523 | None:intergenic | 20.0% |
| !!! | AACCAAATAAGTTTTGATTA+AGG | + | chr3.2:79004865-79004884 | MS.gene06510:intron | 20.0% |
| !!! | ACCAAATAAGTTTTGATTAA+GGG | + | chr3.2:79004866-79004885 | MS.gene06510:intron | 20.0% |
| !!! | ACCCTTTTTATTTTTTATAG+TGG | + | chr3.2:79005264-79005283 | MS.gene06510:intron | 20.0% |
| !!! | AGATTCATTTTTTTGTCTAT+TGG | + | chr3.2:79005518-79005537 | MS.gene06510:intron | 20.0% |
| !!! | ATCTTAGTTTGGAATATATT+GGG | + | chr3.2:79006397-79006416 | MS.gene06510:intron | 20.0% |
| !!! | CTTGTTTTCATTTGTAATTA+TGG | + | chr3.2:79005476-79005495 | MS.gene06510:intron | 20.0% |
| ! | AAAAAACAAGCCAATTCAAT+CGG | + | chr3.2:79005054-79005073 | MS.gene06510:intron | 25.0% |
| ! | AAAATATGAGAAGGGAATTA+GGG | - | chr3.2:79004418-79004437 | None:intergenic | 25.0% |
| ! | ACCCTTAATCAAAACTTATT+TGG | - | chr3.2:79004870-79004889 | None:intergenic | 25.0% |
| ! | CAAAATTAAGCTAATCCAAA+CGG | - | chr3.2:79004893-79004912 | None:intergenic | 25.0% |
| ! | CTAGTATTCGTAATACATAA+TGG | + | chr3.2:79005410-79005429 | MS.gene06510:intron | 25.0% |
| ! | GGTTTCAAAAAAACATGTTA+AGG | - | chr3.2:79005247-79005266 | None:intergenic | 25.0% |
| ! | GTATTTGTGATTTAGGAATT+AGG | + | chr3.2:79004625-79004644 | MS.gene06510:intron | 25.0% |
| ! | TAACTTGAATCATCTTAGTT+TGG | + | chr3.2:79006386-79006405 | MS.gene06510:intron | 25.0% |
| ! | TCATTTGTAATTATGGAACA+AGG | + | chr3.2:79005483-79005502 | MS.gene06510:intron | 25.0% |
| ! | TTGAAAAAGAGATCAGAAAT+TGG | - | chr3.2:79004578-79004597 | None:intergenic | 25.0% |
| !! | AAAACATGGATTGAAGTAAA+AGG | - | chr3.2:79006171-79006190 | None:intergenic | 25.0% |
| !! | AGATATGATGATGTTTACAT+TGG | + | chr3.2:79004516-79004535 | MS.gene06510:intron | 25.0% |
| !! | AGGTTTATACGATAATTTTG+TGG | + | chr3.2:79005139-79005158 | MS.gene06510:intron | 25.0% |
| !! | CATCTTAGTTTGGAATATAT+TGG | + | chr3.2:79006396-79006415 | MS.gene06510:intron | 25.0% |
| !! | TCTTAGTTTGGAATATATTG+GGG | + | chr3.2:79006398-79006417 | MS.gene06510:intron | 25.0% |
| !!! | GTTAGTTTTGTCTAAGTAAT+CGG | + | chr3.2:79006478-79006497 | MS.gene06510:intron | 25.0% |
| !!! | TTGTTTTAAATGCTTCTTCA+GGG | + | chr3.2:79006205-79006224 | MS.gene06510:intron | 25.0% |
| AAATACATGTCAAAGTTTGC+AGG | + | chr3.2:79005791-79005810 | MS.gene06510:CDS | 30.0% | |
| AACATCATAAATCCTGATCT+TGG | - | chr3.2:79005660-79005679 | None:intergenic | 30.0% | |
| AAGATCAGGATTTATGATGT+TGG | + | chr3.2:79005659-79005678 | MS.gene06510:CDS | 30.0% | |
| AATCTGTTTGAACACTCAAT+TGG | + | chr3.2:79006443-79006462 | MS.gene06510:intron | 30.0% | |
| ACATAAAACACGACAAACAA+TGG | - | chr3.2:79005335-79005354 | None:intergenic | 30.0% | |
| ACATCATAAATCCTGATCTT+GGG | - | chr3.2:79005659-79005678 | None:intergenic | 30.0% | |
| AGAAACAAATATCCAACATG+CGG | - | chr3.2:79006342-79006361 | None:intergenic | 30.0% | |
| AGAAAGTTTACACATAAAGC+AGG | - | chr3.2:79005392-79005411 | None:intergenic | 30.0% | |
| GAAAATATGAGAAGGGAATT+AGG | - | chr3.2:79004419-79004438 | None:intergenic | 30.0% | |
| GAACTAACAAACAATGACAA+TGG | - | chr3.2:79005165-79005184 | None:intergenic | 30.0% | |
| GTGGTAAGTATTTGTTCTAT+TGG | + | chr3.2:79006081-79006100 | MS.gene06510:intron | 30.0% | |
| TATGAGGATACAACTTTAGT+TGG | + | chr3.2:79004971-79004990 | MS.gene06510:intron | 30.0% | |
| TTAACTTCAGATAATCAGCT+CGG | - | chr3.2:79006247-79006266 | None:intergenic | 30.0% | |
| ! | TGCTAACAATGATCTTTTGA+CGG | - | chr3.2:79006057-79006076 | None:intergenic | 30.0% |
| ! | TGTTTGTTAGTTCTTGTGTA+TGG | + | chr3.2:79005172-79005191 | MS.gene06510:intron | 30.0% |
| !! | ATGGCTTGTTCTTAATTTGA+CGG | - | chr3.2:79005601-79005620 | None:intergenic | 30.0% |
| !! | TGTTTTAAATGCTTCTTCAG+GGG | + | chr3.2:79006206-79006225 | MS.gene06510:intron | 30.0% |
| !! | TTTTATTTATAGGACCTGCA+AGG | + | chr3.2:79005570-79005589 | MS.gene06510:intron | 30.0% |
| !!! | ATGCTTTTGAAATCGACATT+AGG | + | chr3.2:79005119-79005138 | MS.gene06510:intron | 30.0% |
| !!! | GTTGTTTTAAATGCTTCTTC+AGG | + | chr3.2:79006204-79006223 | MS.gene06510:intron | 30.0% |
| AAGAGATCAGAAATTGGAAG+AGG | - | chr3.2:79004572-79004591 | None:intergenic | 35.0% | |
| ACATGTTAAGGTATGAAGAG+TGG | - | chr3.2:79005235-79005254 | None:intergenic | 35.0% | |
| ATCAGGCATAATTCTGTTCT+CGG | - | chr3.2:79006273-79006292 | None:intergenic | 35.0% | |
| CCTTTGTAGATTTGCAGTAT+GGG | + | chr3.2:79006135-79006154 | MS.gene06510:intron | 35.0% | |
| CTATGAGAAAACAGCTTATG+AGG | + | chr3.2:79004955-79004974 | MS.gene06510:intron | 35.0% | |
| GCAAATCTACAAAGGATACA+AGG | - | chr3.2:79006130-79006149 | None:intergenic | 35.0% | |
| GTCAAAAGATCATTGTTAGC+AGG | + | chr3.2:79006056-79006075 | MS.gene06510:CDS | 35.0% | |
| TCCTTTGTAGATTTGCAGTA+TGG | + | chr3.2:79006134-79006153 | MS.gene06510:intron | 35.0% | |
| TCTTGTTGATCCTAAGAACA+TGG | - | chr3.2:79005856-79005875 | None:intergenic | 35.0% | |
| TTAAGGTATGAAGAGTGGTT+AGG | - | chr3.2:79005230-79005249 | None:intergenic | 35.0% | |
| TTCATCCATTCCATGTTCTT+AGG | + | chr3.2:79005843-79005862 | MS.gene06510:CDS | 35.0% | |
| TTGATCCTAAGAACATGGAA+TGG | - | chr3.2:79005851-79005870 | None:intergenic | 35.0% | |
| TTTATAGTGGTAGACAGTAG+TGG | + | chr3.2:79005277-79005296 | MS.gene06510:intron | 35.0% | |
| ! | CTTTGACATGTATTTGTTGC+AGG | - | chr3.2:79005786-79005805 | None:intergenic | 35.0% |
| ! | GCAAAAAGTATGTCTTTAGC+AGG | - | chr3.2:79006366-79006385 | None:intergenic | 35.0% |
| ! | GTTCTTGTGTATGGATTGTA+AGG | + | chr3.2:79005181-79005200 | MS.gene06510:intron | 35.0% |
| ! | TATTTAGGGTCCGATTGAAT+TGG | - | chr3.2:79005067-79005086 | None:intergenic | 35.0% |
| ! | TTTGTGATTTTGCAGCTTCT+TGG | + | chr3.2:79006521-79006540 | MS.gene06510:intron | 35.0% |
| AACAAGATGCTTTCATGTGC+GGG | + | chr3.2:79005869-79005888 | MS.gene06510:CDS | 40.0% | |
| AGATCATTGTTAGCAGGAAG+TGG | + | chr3.2:79006062-79006081 | MS.gene06510:CDS | 40.0% | |
| ATGCTTTCCACTTGAGAGTT+AGG | + | chr3.2:79005819-79005838 | MS.gene06510:CDS | 40.0% | |
| CAACAAGATGCTTTCATGTG+CGG | + | chr3.2:79005868-79005887 | MS.gene06510:CDS | 40.0% | |
| CAGAAACGTGACTTTGGATA+TGG | - | chr3.2:79005620-79005639 | None:intergenic | 40.0% | |
| CATGTCAAAGTTTGCAGGAA+AGG | + | chr3.2:79005796-79005815 | MS.gene06510:CDS | 40.0% | |
| CCCATACTGCAAATCTACAA+AGG | - | chr3.2:79006138-79006157 | None:intergenic | 40.0% | |
| GAATTCATTGTACCGCATGT+TGG | + | chr3.2:79006327-79006346 | MS.gene06510:intron | 40.0% | |
| GAGAACAGAATTATGCCTGA+TGG | + | chr3.2:79006272-79006291 | MS.gene06510:CDS | 40.0% | |
| GATGTTGGCATGAAGAAGAA+AGG | + | chr3.2:79005674-79005693 | MS.gene06510:CDS | 40.0% | |
| GGAACTTAAACTTAGCACGA+CGG | - | chr3.2:79006030-79006049 | None:intergenic | 40.0% | |
| GGTTGCTTATCGATGAATTC+AGG | + | chr3.2:79005202-79005221 | MS.gene06510:intron | 40.0% | |
| GTTTCCTTTCTGTGTTCATC+TGG | + | chr3.2:79005706-79005725 | MS.gene06510:CDS | 40.0% | |
| TAAATCCTGATCTTGGGATC+AGG | - | chr3.2:79005653-79005672 | None:intergenic | 40.0% | |
| TCTTCTTTCTGTTCGTTGCA+AGG | + | chr3.2:79005973-79005992 | MS.gene06510:CDS | 40.0% | |
| TGCTTTCCACTTGAGAGTTA+GGG | + | chr3.2:79005820-79005839 | MS.gene06510:CDS | 40.0% | |
| TTTGTGCTAGAGTGGCTATT+GGG | + | chr3.2:79005945-79005964 | MS.gene06510:CDS | 40.0% | |
| !! | TTTGCAGTATGGGAGTACTT+TGG | + | chr3.2:79006145-79006164 | MS.gene06510:intron | 40.0% |
| !!! | GTTTTGATTAAGGGTCCGTT+TGG | + | chr3.2:79004875-79004894 | MS.gene06510:intron | 40.0% |
| AAGCAGGCTACGACACATAT+TGG | - | chr3.2:79005376-79005395 | None:intergenic | 45.0% | |
| ACCTTAGCATTCACACCATC+AGG | - | chr3.2:79006290-79006309 | None:intergenic | 45.0% | |
| ACTCTAGCACAAACACCTTG+TGG | - | chr3.2:79005938-79005957 | None:intergenic | 45.0% | |
| ATTGGAAGAGGTTGTCTGTC+AGG | - | chr3.2:79004560-79004579 | None:intergenic | 45.0% | |
| ATTTGACGGTAACACCTTGC+AGG | - | chr3.2:79005587-79005606 | None:intergenic | 45.0% | |
| CTGACCAGATGAACACAGAA+AGG | - | chr3.2:79005713-79005732 | None:intergenic | 45.0% | |
| CTGTGTTCATCTGGTCAGTT+GGG | + | chr3.2:79005715-79005734 | MS.gene06510:CDS | 45.0% | |
| GAAGGAAAATGTGTCCAGTG+AGG | + | chr3.2:79005739-79005758 | MS.gene06510:CDS | 45.0% | |
| GATGAACCCTAACTCTCAAG+TGG | - | chr3.2:79005829-79005848 | None:intergenic | 45.0% | |
| GTCAGGGTGAATCAGAAACA+CGG | - | chr3.2:79004543-79004562 | None:intergenic | 45.0% | |
| GTTTGTGCTAGAGTGGCTAT+TGG | + | chr3.2:79005944-79005963 | MS.gene06510:CDS | 45.0% | |
| TCTGTGTTCATCTGGTCAGT+TGG | + | chr3.2:79005714-79005733 | MS.gene06510:CDS | 45.0% | |
| TGGCTCATACAATACAAGCG+TGG | - | chr3.2:79005315-79005334 | None:intergenic | 45.0% | |
| TTGGAAGAGGTTGTCTGTCA+GGG | - | chr3.2:79004559-79004578 | None:intergenic | 45.0% | |
| ! | ACAAGGTGTTTGTGCTAGAG+TGG | + | chr3.2:79005937-79005956 | MS.gene06510:CDS | 45.0% |
| ! | ACAATGATCTTTTGACGGCC+AGG | - | chr3.2:79006052-79006071 | None:intergenic | 45.0% |
| ! | CAATGATCTTTTGACGGCCA+GGG | - | chr3.2:79006051-79006070 | None:intergenic | 45.0% |
| ! | CGTGCTAAGTTTAAGTTCCC+TGG | + | chr3.2:79006031-79006050 | MS.gene06510:CDS | 45.0% |
| AGGCTTCAGACTGGTATGAG+AGG | + | chr3.2:79005899-79005918 | MS.gene06510:CDS | 50.0% | |
| CAACAACAGCCATCATGCTC+AGG | + | chr3.2:79005997-79006016 | MS.gene06510:CDS | 50.0% | |
| GCTTCAGACTGGTATGAGAG+GGG | + | chr3.2:79005901-79005920 | MS.gene06510:CDS | 50.0% | |
| GGCTTCAGACTGGTATGAGA+GGG | + | chr3.2:79005900-79005919 | MS.gene06510:CDS | 50.0% | |
| GTGTTCCTGATCCCAAGATC+AGG | + | chr3.2:79005645-79005664 | MS.gene06510:CDS | 50.0% | |
| TCATCTGGTCAGTTGGGAGA+AGG | + | chr3.2:79005721-79005740 | MS.gene06510:CDS | 50.0% | |
| TCTTGGATGCCATGGACCAT+TGG | + | chr3.2:79006538-79006557 | MS.gene06510:CDS | 50.0% | |
| TCTTGGGATCAGGAACACCA+CGG | - | chr3.2:79005643-79005662 | None:intergenic | 50.0% | |
| TTGCAGCTTCTTGGATGCCA+TGG | + | chr3.2:79006530-79006549 | MS.gene06510:intron | 50.0% | |
| TTTCATGTGCGGGAGCTGAT+AGG | + | chr3.2:79005879-79005898 | MS.gene06510:CDS | 50.0% | |
| ! | ACTGGTATGAGAGGGGCTTT+TGG | + | chr3.2:79005908-79005927 | MS.gene06510:CDS | 50.0% |
| ! | GCCTGATGGTGTGAATGCTA+AGG | + | chr3.2:79006286-79006305 | MS.gene06510:CDS | 50.0% |
| ACCATTGGCCAACCGTCAAC+CGG | + | chr3.2:79006553-79006572 | MS.gene06510:CDS | 55.0% | |
| AGCAGCTTCAAGTGCCTCAC+TGG | - | chr3.2:79005756-79005775 | None:intergenic | 55.0% | |
| CAACAGCCATCATGCTCAGG+AGG | + | chr3.2:79006000-79006019 | MS.gene06510:CDS | 55.0% | |
| CCAAAGTCACGTTTCTGCCG+TGG | + | chr3.2:79005623-79005642 | MS.gene06510:CDS | 55.0% | |
| CCACGGCAGAAACGTGACTT+TGG | - | chr3.2:79005626-79005645 | None:intergenic | 55.0% | |
| CCTCATTACAGCTGGCAGTC+AGG | - | chr3.2:79006589-79006608 | None:intergenic | 55.0% | |
| CCTGACTGCCAGCTGTAATG+AGG | + | chr3.2:79006586-79006605 | MS.gene06510:CDS | 55.0% | |
| GCAGTCAGGAAAGCTCTTCC+CGG | - | chr3.2:79006575-79006594 | None:intergenic | 55.0% | |
| GGAAAGCTCTTCCCGGTTGA+CGG | - | chr3.2:79006568-79006587 | None:intergenic | 55.0% | |
| GGAGCTGATAGGCTTCAGAC+TGG | + | chr3.2:79005890-79005909 | MS.gene06510:CDS | 55.0% | |
| TGCTAGAGTGGCTATTGGGC+AGG | + | chr3.2:79005949-79005968 | MS.gene06510:CDS | 55.0% | |
| ! | GTGAGGCACTTGAAGCTGCT+AGG | + | chr3.2:79005756-79005775 | MS.gene06510:CDS | 55.0% |
| !! | GGGGCTTTTGGAAAGCCACA+AGG | + | chr3.2:79005920-79005939 | MS.gene06510:CDS | 55.0% |
| AGCTCTTCCCGGTTGACGGT+TGG | - | chr3.2:79006564-79006583 | None:intergenic | 60.0% | |
| CCATTGGCCAACCGTCAACC+GGG | + | chr3.2:79006554-79006573 | MS.gene06510:CDS | 60.0% | |
| GGAGAGCCTCCTGAGCATGA+TGG | - | chr3.2:79006009-79006028 | None:intergenic | 60.0% | |
| ! | GACGGTTGGCCAATGGTCCA+TGG | - | chr3.2:79006550-79006569 | None:intergenic | 60.0% |
| ! | CCCGGTTGACGGTTGGCCAA+TGG | - | chr3.2:79006557-79006576 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 79004399 | 79006613 | 79004399 | ID=MS.gene06510 |
| chr3.2 | mRNA | 79004399 | 79006613 | 79004399 | ID=MS.gene06510.t1;Parent=MS.gene06510 |
| chr3.2 | exon | 79004399 | 79004408 | 79004399 | ID=MS.gene06510.t1.exon1;Parent=MS.gene06510.t1 |
| chr3.2 | CDS | 79004399 | 79004408 | 79004399 | ID=cds.MS.gene06510.t1;Parent=MS.gene06510.t1 |
| chr3.2 | exon | 79005582 | 79006083 | 79005582 | ID=MS.gene06510.t1.exon2;Parent=MS.gene06510.t1 |
| chr3.2 | CDS | 79005582 | 79006083 | 79005582 | ID=cds.MS.gene06510.t1;Parent=MS.gene06510.t1 |
| chr3.2 | exon | 79006226 | 79006307 | 79006226 | ID=MS.gene06510.t1.exon3;Parent=MS.gene06510.t1 |
| chr3.2 | CDS | 79006226 | 79006307 | 79006226 | ID=cds.MS.gene06510.t1;Parent=MS.gene06510.t1 |
| chr3.2 | exon | 79006536 | 79006613 | 79006536 | ID=MS.gene06510.t1.exon4;Parent=MS.gene06510.t1 |
| chr3.2 | CDS | 79006536 | 79006613 | 79006536 | ID=cds.MS.gene06510.t1;Parent=MS.gene06510.t1 |
| Gene Sequence |
| Protein sequence |
