Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05113.t1 | XP_003600557.1 | 98.6 | 217 | 3 | 0 | 1 | 217 | 1 | 217 | 6.80E-123 | 449.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05113.t1 | Q9SPB3 | 90.3 | 216 | 21 | 0 | 1 | 216 | 1 | 216 | 5.3e-116 | 418.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05113.t1 | G7IV57 | 98.6 | 217 | 3 | 0 | 1 | 217 | 1 | 217 | 4.9e-123 | 449.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05113 | MS.gene53866 | 0.816787 | 4.62E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05113 | MS.gene013414 | PPI |
| MS.gene043476 | MS.gene05113 | PPI |
| MS.gene05113 | MS.gene06510 | PPI |
| MS.gene53866 | MS.gene05113 | PPI |
| MS.gene05113 | MS.gene049604 | PPI |
| MS.gene05113 | MS.gene059339 | PPI |
| MS.gene31405 | MS.gene05113 | PPI |
| MS.gene028847 | MS.gene05113 | PPI |
| MS.gene05113 | MS.gene049386 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05113.t1 | MTR_3g062600 | 98.618 | 217 | 3 | 0 | 1 | 217 | 1 | 217 | 4.84e-161 | 444 |
| MS.gene05113.t1 | MTR_2g090910 | 93.151 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 8.24e-153 | 423 |
| MS.gene05113.t1 | MTR_3g094230 | 92.694 | 219 | 16 | 0 | 1 | 219 | 1 | 219 | 2.03e-152 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05113.t1 | AT1G26910 | 86.364 | 220 | 30 | 0 | 1 | 220 | 1 | 220 | 6.36e-143 | 398 |
| MS.gene05113.t1 | AT1G14320 | 87.097 | 217 | 28 | 0 | 1 | 217 | 1 | 217 | 8.16e-143 | 397 |
| MS.gene05113.t1 | AT1G66580 | 85.455 | 220 | 32 | 0 | 1 | 220 | 1 | 220 | 6.16e-141 | 393 |
| MS.gene05113.t1 | AT1G26910 | 85.165 | 182 | 27 | 0 | 39 | 220 | 2 | 183 | 2.34e-114 | 324 |
| MS.gene05113.t1 | AT1G14320 | 77.381 | 84 | 19 | 0 | 134 | 217 | 40 | 123 | 6.53e-43 | 141 |
| MS.gene05113.t1 | AT1G14320 | 97.368 | 38 | 1 | 0 | 39 | 76 | 2 | 39 | 1.07e-19 | 81.6 |
Find 68 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCGTAGATTCGGATCTT+TGG | 0.279539 | 3.4:-64998943 | None:intergenic |
| ATGGCTTGTTCTTTATTTGC+CGG | 0.339626 | 3.4:-64998885 | None:intergenic |
| TCTTGGGTGCCATGGACCTT+TGG | 0.343782 | 3.4:+65000074 | MS.gene05113:CDS |
| CGTGCTAAGTTTAAGTTCCC+TGG | 0.352955 | 3.4:+64999318 | MS.gene05113:CDS |
| ACGGGGATGAGAGGTGCGTT+TGG | 0.384343 | 3.4:+64999195 | MS.gene05113:CDS |
| CGCGTTTCATTTGCGTGTGA+GGG | 0.390227 | 3.4:+64999107 | MS.gene05113:CDS |
| ACCTTTGCATTTACCCCATC+CGG | 0.395333 | 3.4:-64999942 | None:intergenic |
| CCTCGACAGAATCGTGACTT+TGG | 0.395801 | 3.4:-64998910 | None:intergenic |
| ATTGGCAAGAAAGCTCTTCC+AGG | 0.400977 | 3.4:-65000108 | None:intergenic |
| TGCTAGGGTTAGTATTGGTC+AGG | 0.403771 | 3.4:+64999236 | MS.gene05113:CDS |
| GGTGCGTTTGGGAAACCGTT+AGG | 0.413754 | 3.4:+64999207 | MS.gene05113:CDS |
| TAGGACCGGCGAGATGTTAC+CGG | 0.419136 | 3.4:+64998866 | MS.gene05113:intron |
| TTTCAGGTTCTTGGGTGCCA+TGG | 0.433018 | 3.4:+65000066 | MS.gene05113:intron |
| CGGGGATGAGAGGTGCGTTT+GGG | 0.435241 | 3.4:+64999196 | MS.gene05113:CDS |
| TCTGCGTCCACTTGGTATCA+TGG | 0.437773 | 3.4:+64999001 | MS.gene05113:CDS |
| CTCGACAGAATCGTGACTTT+GGG | 0.442929 | 3.4:-64998909 | None:intergenic |
| AAGTACATGTCGAAATTTGC+TGG | 0.448147 | 3.4:+64999078 | MS.gene05113:CDS |
| GGGGCGGATAGGTTGCAAAC+GGG | 0.448995 | 3.4:+64999177 | MS.gene05113:CDS |
| AGATTATTGTTAGTAGAAAG+TGG | 0.459647 | 3.4:+64999349 | MS.gene05113:CDS |
| TAGTTGCTTACTTCTTCCCA+TGG | 0.476255 | 3.4:-64998599 | None:intergenic |
| TCGCCCCTACATCGTAGATT+CGG | 0.478381 | 3.4:-64998951 | None:intergenic |
| TTCATCCTTTCCATGTGTTG+AGG | 0.481389 | 3.4:+64999130 | MS.gene05113:CDS |
| CAGAATCGTGACTTTGGGTA+TGG | 0.485516 | 3.4:-64998904 | None:intergenic |
| TATCGTGCGCTGGGGCGGAT+AGG | 0.485722 | 3.4:+64999166 | MS.gene05113:CDS |
| AATAAGATGCTATCGTGCGC+TGG | 0.485788 | 3.4:+64999156 | MS.gene05113:CDS |
| ACGCGTTTCATTTGCGTGTG+AGG | 0.487582 | 3.4:+64999106 | MS.gene05113:CDS |
| GTGCGTTTGGGAAACCGTTA+GGG | 0.487868 | 3.4:+64999208 | MS.gene05113:CDS |
| TAGATTCGGATCTTTGGATC+AGG | 0.488790 | 3.4:-64998937 | None:intergenic |
| ATAAGATGCTATCGTGCGCT+GGG | 0.494058 | 3.4:+64999157 | MS.gene05113:CDS |
| AAGATCCGAATCTACGATGT+AGG | 0.496199 | 3.4:+64998946 | MS.gene05113:CDS |
| ATACCAAGTGGACGCAGAAT+GGG | 0.497494 | 3.4:-64998996 | None:intergenic |
| CCTTTGGCCAATCGTCAGCC+TGG | 0.499139 | 3.4:+65000090 | MS.gene05113:CDS |
| ACAATAATCTTCTGACGCCC+AGG | 0.505154 | 3.4:-64999336 | None:intergenic |
| AACCGTTAGGGACTTGTGCT+AGG | 0.506463 | 3.4:+64999220 | MS.gene05113:CDS |
| AGATCCGAATCTACGATGTA+GGG | 0.511886 | 3.4:+64998947 | MS.gene05113:CDS |
| GATACCAAGTGGACGCAGAA+TGG | 0.515306 | 3.4:-64998997 | None:intergenic |
| ATCTGAGAACAGAATTATGC+CGG | 0.523267 | 3.4:+64999923 | MS.gene05113:CDS |
| GTGCTAAGTTTAAGTTCCCT+GGG | 0.524046 | 3.4:+64999319 | MS.gene05113:CDS |
| AGCTCTTCCAGGCTGACGAT+TGG | 0.530968 | 3.4:-65000097 | None:intergenic |
| CTGCGTCCACTTGGTATCAT+GGG | 0.531766 | 3.4:+64999002 | MS.gene05113:CDS |
| TGGGGCGGATAGGTTGCAAA+CGG | 0.539361 | 3.4:+64999176 | MS.gene05113:CDS |
| ACTTGTGCTAGGGTTAGTAT+TGG | 0.541416 | 3.4:+64999231 | MS.gene05113:CDS |
| GTTCCCATTCTGCGTCCACT+TGG | 0.544714 | 3.4:+64998993 | MS.gene05113:CDS |
| AGAACAGAATTATGCCGGAT+GGG | 0.546335 | 3.4:+64999928 | MS.gene05113:CDS |
| ACCGTTAGGGACTTGTGCTA+GGG | 0.551725 | 3.4:+64999221 | MS.gene05113:CDS |
| TTAATCCTCAACACATGGAA+AGG | 0.561933 | 3.4:-64999135 | None:intergenic |
| GACGATTGGCCAAAGGTCCA+TGG | 0.563505 | 3.4:-65000083 | None:intergenic |
| CCACTTGGTATCATGGGAGA+AGG | 0.580044 | 3.4:+64999008 | MS.gene05113:CDS |
| ATATATTTCTAAGCAGACAT+TGG | 0.585277 | 3.4:-65000126 | None:intergenic |
| AGGTTGCAAACGGGGATGAG+AGG | 0.586075 | 3.4:+64999186 | MS.gene05113:CDS |
| GATGCTATCGTGCGCTGGGG+CGG | 0.591443 | 3.4:+64999161 | MS.gene05113:CDS |
| GAACAGAATTATGCCGGATG+GGG | 0.593803 | 3.4:+64999929 | MS.gene05113:CDS |
| GAATGGTGATCATGCTCAAG+AGG | 0.599366 | 3.4:+64999287 | MS.gene05113:CDS |
| GTTAGATGCAAGAGTGGGAA+TGG | 0.602579 | 3.4:+64999270 | MS.gene05113:CDS |
| GCCGGATGGGGTAAATGCAA+AGG | 0.604693 | 3.4:+64999941 | MS.gene05113:CDS |
| GAGAACAGAATTATGCCGGA+TGG | 0.605369 | 3.4:+64999927 | MS.gene05113:CDS |
| TCTTATTAATCCTCAACACA+TGG | 0.609244 | 3.4:-64999140 | None:intergenic |
| CAATAATCTTCTGACGCCCA+GGG | 0.610554 | 3.4:-64999335 | None:intergenic |
| GGGCGGATAGGTTGCAAACG+GGG | 0.616350 | 3.4:+64999178 | MS.gene05113:CDS |
| CCAGGCTGACGATTGGCCAA+AGG | 0.617677 | 3.4:-65000090 | None:intergenic |
| ATTTGCCGGTAACATCTCGC+CGG | 0.618985 | 3.4:-64998871 | None:intergenic |
| CCTTCTCCCATGATACCAAG+TGG | 0.622438 | 3.4:-64999008 | None:intergenic |
| ACCCTAGCACAAGTCCCTAA+CGG | 0.623661 | 3.4:-64999222 | None:intergenic |
| TTGTCTGTTAGATGCAAGAG+TGG | 0.648227 | 3.4:+64999264 | MS.gene05113:CDS |
| GATCCGAATCTACGATGTAG+GGG | 0.661772 | 3.4:+64998948 | MS.gene05113:CDS |
| CCAAAGTCACGATTCTGTCG+AGG | 0.671675 | 3.4:+64998910 | MS.gene05113:CDS |
| TAAGATGCTATCGTGCGCTG+GGG | 0.680697 | 3.4:+64999158 | MS.gene05113:CDS |
| TGTCTGTTAGATGCAAGAGT+GGG | 0.756778 | 3.4:+64999265 | MS.gene05113:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATTTAAACATAAAAATA+CGG | - | chr3.4:64998800-64998819 | None:intergenic | 10.0% |
| !!! | TAATTGTTTTCAATTTTTTA+GGG | + | chr3.4:64999860-64999879 | MS.gene05113:intron | 10.0% |
| !!! | TTAATTGTTTTCAATTTTTT+AGG | + | chr3.4:64999859-64999878 | MS.gene05113:intron | 10.0% |
| !! | ACATGATATCAATTTATTTA+AGG | + | chr3.4:64999976-64999995 | MS.gene05113:intron | 15.0% |
| !! | CATGATATCAATTTATTTAA+GGG | + | chr3.4:64999977-64999996 | MS.gene05113:intron | 15.0% |
| !!! | AATTGTTTTCAATTTTTTAG+GGG | + | chr3.4:64999861-64999880 | MS.gene05113:intron | 15.0% |
| !!! | TAAACATTTTGATATTTGTT+AGG | + | chr3.4:64998847-64998866 | MS.gene05113:intron | 15.0% |
| !! | AAAATATACACAACATCAAT+AGG | - | chr3.4:64998730-64998749 | None:intergenic | 20.0% |
| !! | TAAAAAAGAACATGAAAATC+TGG | - | chr3.4:64999417-64999436 | None:intergenic | 20.0% |
| !!! | ATCATATTTTTTGATAGATG+AGG | + | chr3.4:65000017-65000036 | MS.gene05113:intron | 20.0% |
| !!! | TTAGAATTGCTTTAAAAACA+AGG | - | chr3.4:64999812-64999831 | None:intergenic | 20.0% |
| ! | AACTTAGACAATGATTTGAT+TGG | - | chr3.4:64999700-64999719 | None:intergenic | 25.0% |
| ! | AGATTATTGTTAGTAGAAAG+TGG | + | chr3.4:64999349-64999368 | MS.gene05113:CDS | 25.0% |
| ! | CACAACTCTAATTATTCTAA+CGG | + | chr3.4:64998819-64998838 | MS.gene05113:intron | 25.0% |
| !! | AAAATTTTCCTGCATTTTTC+AGG | + | chr3.4:65000050-65000069 | MS.gene05113:intron | 25.0% |
| !! | TGTTTTCCTTTTTGTTAAAC+CGG | + | chr3.4:64999671-64999690 | MS.gene05113:intron | 25.0% |
| !!! | ATTTTGATATTTGTTAGGAC+CGG | + | chr3.4:64998852-64998871 | MS.gene05113:intron | 25.0% |
| AAAAAGAAAGAAAGAGAGAG+AGG | - | chr3.4:64998630-64998649 | None:intergenic | 30.0% | |
| AAATCATTGTCTAAGTTGTG+AGG | + | chr3.4:64999703-64999722 | MS.gene05113:intron | 30.0% | |
| ATCAATTTATTTAAGGGAGC+TGG | + | chr3.4:64999983-65000002 | MS.gene05113:intron | 30.0% | |
| TCTTATTAATCCTCAACACA+TGG | - | chr3.4:64999143-64999162 | None:intergenic | 30.0% | |
| AAGTACATGTCGAAATTTGC+TGG | + | chr3.4:64999078-64999097 | MS.gene05113:CDS | 35.0% | |
| ATCTGAGAACAGAATTATGC+CGG | + | chr3.4:64999923-64999942 | MS.gene05113:CDS | 35.0% | |
| ATTTATTTAAGGGAGCTGGT+TGG | + | chr3.4:64999987-65000006 | MS.gene05113:intron | 35.0% | |
| TTAATCCTCAACACATGGAA+AGG | - | chr3.4:64999138-64999157 | None:intergenic | 35.0% | |
| ! | ACAATGATTTGATTGGTGTC+CGG | - | chr3.4:64999693-64999712 | None:intergenic | 35.0% |
| ! | TAACAGTGAGCTTCTACTTT+TGG | + | chr3.4:64999730-64999749 | MS.gene05113:intron | 35.0% |
| ! | TCTCTAGAAGTAGAAGTTCA+TGG | + | chr3.4:64999551-64999570 | MS.gene05113:intron | 35.0% |
| !! | ATGGCTTGTTCTTTATTTGC+CGG | - | chr3.4:64998888-64998907 | None:intergenic | 35.0% |
| !! | GTTTGAGATTGTGAGTTGAT+CGG | + | chr3.4:64999590-64999609 | MS.gene05113:intron | 35.0% |
| AAGATCCGAATCTACGATGT+AGG | + | chr3.4:64998946-64998965 | MS.gene05113:CDS | 40.0% | |
| ACATCGTAGATTCGGATCTT+TGG | - | chr3.4:64998946-64998965 | None:intergenic | 40.0% | |
| AGAACAGAATTATGCCGGAT+GGG | + | chr3.4:64999928-64999947 | MS.gene05113:CDS | 40.0% | |
| AGATCCGAATCTACGATGTA+GGG | + | chr3.4:64998947-64998966 | MS.gene05113:CDS | 40.0% | |
| TAGATTCGGATCTTTGGATC+AGG | - | chr3.4:64998940-64998959 | None:intergenic | 40.0% | |
| TGGTGTCCGGTTTAACAAAA+AGG | - | chr3.4:64999680-64999699 | None:intergenic | 40.0% | |
| TGTCTGTTAGATGCAAGAGT+GGG | + | chr3.4:64999265-64999284 | MS.gene05113:CDS | 40.0% | |
| TTCATCCTTTCCATGTGTTG+AGG | + | chr3.4:64999130-64999149 | MS.gene05113:CDS | 40.0% | |
| TTGTCTGTTAGATGCAAGAG+TGG | + | chr3.4:64999264-64999283 | MS.gene05113:CDS | 40.0% | |
| ! | ACTTGTGCTAGGGTTAGTAT+TGG | + | chr3.4:64999231-64999250 | MS.gene05113:CDS | 40.0% |
| ! | GTGCTAAGTTTAAGTTCCCT+GGG | + | chr3.4:64999319-64999338 | MS.gene05113:CDS | 40.0% |
| !!! | CCTGCATTTTTCAGGTTCTT+GGG | + | chr3.4:65000058-65000077 | MS.gene05113:intron | 40.0% |
| !!! | TCCTGCATTTTTCAGGTTCT+TGG | + | chr3.4:65000057-65000076 | MS.gene05113:intron | 40.0% |
| AATAAGATGCTATCGTGCGC+TGG | + | chr3.4:64999156-64999175 | MS.gene05113:CDS | 45.0% | |
| ACAATAATCTTCTGACGCCC+AGG | - | chr3.4:64999339-64999358 | None:intergenic | 45.0% | |
| ACCTTTGCATTTACCCCATC+CGG | - | chr3.4:64999945-64999964 | None:intergenic | 45.0% | |
| ATAAGATGCTATCGTGCGCT+GGG | + | chr3.4:64999157-64999176 | MS.gene05113:CDS | 45.0% | |
| ATACCAAGTGGACGCAGAAT+GGG | - | chr3.4:64998999-64999018 | None:intergenic | 45.0% | |
| ATTGGCAAGAAAGCTCTTCC+AGG | - | chr3.4:65000111-65000130 | None:intergenic | 45.0% | |
| CAATAATCTTCTGACGCCCA+GGG | - | chr3.4:64999338-64999357 | None:intergenic | 45.0% | |
| CAGAATCGTGACTTTGGGTA+TGG | - | chr3.4:64998907-64998926 | None:intergenic | 45.0% | |
| CCCAAGAACCTGAAAAATGC+AGG | - | chr3.4:65000061-65000080 | None:intergenic | 45.0% | |
| CTCGACAGAATCGTGACTTT+GGG | - | chr3.4:64998912-64998931 | None:intergenic | 45.0% | |
| GAACAGAATTATGCCGGATG+GGG | + | chr3.4:64999929-64999948 | MS.gene05113:CDS | 45.0% | |
| GAATGGTGATCATGCTCAAG+AGG | + | chr3.4:64999287-64999306 | MS.gene05113:CDS | 45.0% | |
| GAGAACAGAATTATGCCGGA+TGG | + | chr3.4:64999927-64999946 | MS.gene05113:CDS | 45.0% | |
| GATCCGAATCTACGATGTAG+GGG | + | chr3.4:64998948-64998967 | MS.gene05113:CDS | 45.0% | |
| GATGTAGGGGCGAAGAAAAA+AGG | + | chr3.4:64998961-64998980 | MS.gene05113:CDS | 45.0% | |
| GTTAGATGCAAGAGTGGGAA+TGG | + | chr3.4:64999270-64999289 | MS.gene05113:CDS | 45.0% | |
| ! | CGTGCTAAGTTTAAGTTCCC+TGG | + | chr3.4:64999318-64999337 | MS.gene05113:CDS | 45.0% |
| !! | TGCTAGGGTTAGTATTGGTC+AGG | + | chr3.4:64999236-64999255 | MS.gene05113:CDS | 45.0% |
| AACCGTTAGGGACTTGTGCT+AGG | + | chr3.4:64999220-64999239 | MS.gene05113:CDS | 50.0% | |
| ACCCTAGCACAAGTCCCTAA+CGG | - | chr3.4:64999225-64999244 | None:intergenic | 50.0% | |
| ACCGTTAGGGACTTGTGCTA+GGG | + | chr3.4:64999221-64999240 | MS.gene05113:CDS | 50.0% | |
| ACGCGTTTCATTTGCGTGTG+AGG | + | chr3.4:64999106-64999125 | MS.gene05113:CDS | 50.0% | |
| ATTTGCCGGTAACATCTCGC+CGG | - | chr3.4:64998874-64998893 | None:intergenic | 50.0% | |
| CCAAAGTCACGATTCTGTCG+AGG | + | chr3.4:64998910-64998929 | MS.gene05113:CDS | 50.0% | |
| CCACTTGGTATCATGGGAGA+AGG | + | chr3.4:64999008-64999027 | MS.gene05113:CDS | 50.0% | |
| CCTCGACAGAATCGTGACTT+TGG | - | chr3.4:64998913-64998932 | None:intergenic | 50.0% | |
| CCTTCTCCCATGATACCAAG+TGG | - | chr3.4:64999011-64999030 | None:intergenic | 50.0% | |
| CGCGTTTCATTTGCGTGTGA+GGG | + | chr3.4:64999107-64999126 | MS.gene05113:CDS | 50.0% | |
| CTGCGTCCACTTGGTATCAT+GGG | + | chr3.4:64999002-64999021 | MS.gene05113:CDS | 50.0% | |
| GATACCAAGTGGACGCAGAA+TGG | - | chr3.4:64999000-64999019 | None:intergenic | 50.0% | |
| GTGCGTTTGGGAAACCGTTA+GGG | + | chr3.4:64999208-64999227 | MS.gene05113:CDS | 50.0% | |
| TAAGATGCTATCGTGCGCTG+GGG | + | chr3.4:64999158-64999177 | MS.gene05113:CDS | 50.0% | |
| TCGCCCCTACATCGTAGATT+CGG | - | chr3.4:64998954-64998973 | None:intergenic | 50.0% | |
| TCTGCGTCCACTTGGTATCA+TGG | + | chr3.4:64999001-64999020 | MS.gene05113:CDS | 50.0% | |
| !! | TTTCAGGTTCTTGGGTGCCA+TGG | + | chr3.4:65000066-65000085 | MS.gene05113:intron | 50.0% |
| AGCTCTTCCAGGCTGACGAT+TGG | - | chr3.4:65000100-65000119 | None:intergenic | 55.0% | |
| AGGTTGCAAACGGGGATGAG+AGG | + | chr3.4:64999186-64999205 | MS.gene05113:CDS | 55.0% | |
| GCCGGATGGGGTAAATGCAA+AGG | + | chr3.4:64999941-64999960 | MS.gene05113:CDS | 55.0% | |
| GGTGCGTTTGGGAAACCGTT+AGG | + | chr3.4:64999207-64999226 | MS.gene05113:CDS | 55.0% | |
| GTTCCCATTCTGCGTCCACT+TGG | + | chr3.4:64998993-64999012 | MS.gene05113:CDS | 55.0% | |
| TAGGACCGGCGAGATGTTAC+CGG | + | chr3.4:64998866-64998885 | MS.gene05113:intron | 55.0% | |
| TGGGGCGGATAGGTTGCAAA+CGG | + | chr3.4:64999176-64999195 | MS.gene05113:CDS | 55.0% | |
| ! | GACGATTGGCCAAAGGTCCA+TGG | - | chr3.4:65000086-65000105 | None:intergenic | 55.0% |
| ! | TCTTGGGTGCCATGGACCTT+TGG | + | chr3.4:65000074-65000093 | MS.gene05113:CDS | 55.0% |
| CCTTTGGCCAATCGTCAGCC+TGG | + | chr3.4:65000090-65000109 | MS.gene05113:CDS | 60.0% | |
| GGGCGGATAGGTTGCAAACG+GGG | + | chr3.4:64999178-64999197 | MS.gene05113:CDS | 60.0% | |
| GGGGCGGATAGGTTGCAAAC+GGG | + | chr3.4:64999177-64999196 | MS.gene05113:CDS | 60.0% | |
| ! | ACGGGGATGAGAGGTGCGTT+TGG | + | chr3.4:64999195-64999214 | MS.gene05113:CDS | 60.0% |
| ! | CCAGGCTGACGATTGGCCAA+AGG | - | chr3.4:65000093-65000112 | None:intergenic | 60.0% |
| ! | CGGGGATGAGAGGTGCGTTT+GGG | + | chr3.4:64999196-64999215 | MS.gene05113:CDS | 60.0% |
| GATGCTATCGTGCGCTGGGG+CGG | + | chr3.4:64999161-64999180 | MS.gene05113:CDS | 65.0% | |
| TATCGTGCGCTGGGGCGGAT+AGG | + | chr3.4:64999166-64999185 | MS.gene05113:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 64998601 | 65000140 | 64998601 | ID=MS.gene05113 |
| chr3.4 | mRNA | 64998601 | 65000140 | 64998601 | ID=MS.gene05113.t1;Parent=MS.gene05113 |
| chr3.4 | exon | 64998601 | 64998610 | 64998601 | ID=MS.gene05113.t1.exon1;Parent=MS.gene05113.t1 |
| chr3.4 | CDS | 64998601 | 64998610 | 64998601 | ID=cds.MS.gene05113.t1;Parent=MS.gene05113.t1 |
| chr3.4 | exon | 64998869 | 64999370 | 64998869 | ID=MS.gene05113.t1.exon2;Parent=MS.gene05113.t1 |
| chr3.4 | CDS | 64998869 | 64999370 | 64998869 | ID=cds.MS.gene05113.t1;Parent=MS.gene05113.t1 |
| chr3.4 | exon | 64999881 | 64999962 | 64999881 | ID=MS.gene05113.t1.exon3;Parent=MS.gene05113.t1 |
| chr3.4 | CDS | 64999881 | 64999962 | 64999881 | ID=cds.MS.gene05113.t1;Parent=MS.gene05113.t1 |
| chr3.4 | exon | 65000072 | 65000140 | 65000072 | ID=MS.gene05113.t1.exon4;Parent=MS.gene05113.t1 |
| chr3.4 | CDS | 65000072 | 65000140 | 65000072 | ID=cds.MS.gene05113.t1;Parent=MS.gene05113.t1 |
| Gene Sequence |
| Protein sequence |
