Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53866.t1 | XP_003600557.1 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 4.70E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53866.t1 | Q9SPB3 | 89.8 | 216 | 22 | 0 | 1 | 216 | 1 | 216 | 1.2e-115 | 417.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53866.t1 | G7IV57 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 3.4e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049604 | MS.gene53866 | 0.955537 | 2.41E-113 | -1.69E-46 |
| MS.gene05113 | MS.gene53866 | 0.816787 | 4.62E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31405 | MS.gene53866 | PPI |
| MS.gene028847 | MS.gene53866 | PPI |
| MS.gene53866 | MS.gene049604 | PPI |
| MS.gene53866 | MS.gene31405 | PPI |
| MS.gene53866 | MS.gene059339 | PPI |
| MS.gene53866 | MS.gene049386 | PPI |
| MS.gene043476 | MS.gene53866 | PPI |
| MS.gene53866 | MS.gene05113 | PPI |
| MS.gene53866 | MS.gene013414 | PPI |
| MS.gene53866 | MS.gene06510 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53866.t1 | MTR_3g062600 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.49e-162 | 447 |
| MS.gene53866.t1 | MTR_2g090910 | 93.151 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 5.86e-153 | 423 |
| MS.gene53866.t1 | MTR_3g094230 | 92.694 | 219 | 16 | 0 | 1 | 219 | 1 | 219 | 1.45e-152 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53866.t1 | AT1G26910 | 86.364 | 220 | 30 | 0 | 1 | 220 | 1 | 220 | 4.84e-143 | 398 |
| MS.gene53866.t1 | AT1G14320 | 87.097 | 217 | 28 | 0 | 1 | 217 | 1 | 217 | 6.01e-143 | 398 |
| MS.gene53866.t1 | AT1G66580 | 85.455 | 220 | 32 | 0 | 1 | 220 | 1 | 220 | 4.63e-141 | 393 |
| MS.gene53866.t1 | AT1G26910 | 85.165 | 182 | 27 | 0 | 39 | 220 | 2 | 183 | 1.61e-114 | 325 |
| MS.gene53866.t1 | AT1G14320 | 78.571 | 84 | 18 | 0 | 134 | 217 | 40 | 123 | 1.68e-43 | 142 |
| MS.gene53866.t1 | AT1G14320 | 97.368 | 38 | 1 | 0 | 39 | 76 | 2 | 39 | 1.02e-19 | 81.6 |
Find 62 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCGTAGATTCGAATCTT+TGG | 0.292285 | 3.1:-52717462 | None:intergenic |
| TCTTGGGTGCCATGGACCTT+TGG | 0.343782 | 3.1:+52718588 | MS.gene53866:CDS |
| CGTGCTAAGTTTAAGTTCCC+TGG | 0.352955 | 3.1:+52717837 | MS.gene53866:CDS |
| GTCAGGTGCTGTTGTCTGTT+AGG | 0.361281 | 3.1:+52717772 | MS.gene53866:CDS |
| ACGGGGATGAGAGGTGCGTT+TGG | 0.374101 | 3.1:+52717714 | MS.gene53866:CDS |
| ATGGTTTGTTCTTTATTTGC+CGG | 0.389322 | 3.1:-52717404 | None:intergenic |
| ACCTTTGCATTTACCCCATC+CGG | 0.395333 | 3.1:-52718456 | None:intergenic |
| ATTGGCAAGAAAGCTCTTCC+AGG | 0.400977 | 3.1:-52718622 | None:intergenic |
| CCGCGACAAAATCGTGACTT+TGG | 0.406626 | 3.1:-52717429 | None:intergenic |
| AAGTATATGTCGAAGTTTGC+TGG | 0.409714 | 3.1:+52717597 | MS.gene53866:CDS |
| TGCTAGGGTTAGTATTGGTC+AGG | 0.412106 | 3.1:+52717755 | MS.gene53866:CDS |
| GGTGCGTTTGGGAAACCGTT+AGG | 0.413754 | 3.1:+52717726 | MS.gene53866:CDS |
| CGCGACAAAATCGTGACTTT+GGG | 0.417374 | 3.1:-52717428 | None:intergenic |
| TAGGACCGGCGAGATGTTAC+CGG | 0.419136 | 3.1:+52717385 | MS.gene53866:intron |
| TTTCAGGTTCTTGGGTGCCA+TGG | 0.433018 | 3.1:+52718580 | MS.gene53866:intron |
| CGGGGATGAGAGGTGCGTTT+GGG | 0.435241 | 3.1:+52717715 | MS.gene53866:CDS |
| TCTGCGTCCACTTGGTATCA+TGG | 0.437773 | 3.1:+52717520 | MS.gene53866:CDS |
| TAGATTCGAATCTTTGGATC+TGG | 0.447570 | 3.1:-52717456 | None:intergenic |
| CAAAATCGTGACTTTGGGTA+TGG | 0.448064 | 3.1:-52717423 | None:intergenic |
| AGATTATTGTTAGTAGAAAG+TGG | 0.459647 | 3.1:+52717868 | MS.gene53866:CDS |
| TTCATCCTTTCCATGTGTTG+AGG | 0.481389 | 3.1:+52717649 | MS.gene53866:CDS |
| CACGTTTCATTTGCGTGTGA+GGG | 0.483204 | 3.1:+52717626 | MS.gene53866:CDS |
| GTGCGTTTGGGAAACCGTTA+GGG | 0.487868 | 3.1:+52717727 | MS.gene53866:CDS |
| ATACCAAGTGGACGCAGAAT+GGG | 0.497494 | 3.1:-52717515 | None:intergenic |
| CCTTTGGCCAATCGTCAGCC+TGG | 0.499139 | 3.1:+52718604 | MS.gene53866:CDS |
| TATCGTGTGCTGGAGCTGAT+AGG | 0.499734 | 3.1:+52717685 | MS.gene53866:CDS |
| ACAATAATCTTCTGACGCCC+AGG | 0.505154 | 3.1:-52717855 | None:intergenic |
| AACCGTTAGGGACTTGTGCT+AGG | 0.506463 | 3.1:+52717739 | MS.gene53866:CDS |
| GATACCAAGTGGACGCAGAA+TGG | 0.515306 | 3.1:-52717516 | None:intergenic |
| ATCTGAGAACAGAATTATGC+CGG | 0.523267 | 3.1:+52718437 | MS.gene53866:CDS |
| AATAAGATGCTATCGTGTGC+TGG | 0.523390 | 3.1:+52717675 | MS.gene53866:CDS |
| GTGCTAAGTTTAAGTTCCCT+GGG | 0.524046 | 3.1:+52717838 | MS.gene53866:CDS |
| AGCTCTTCCAGGCTGACGAT+TGG | 0.530968 | 3.1:-52718611 | None:intergenic |
| CTGCGTCCACTTGGTATCAT+GGG | 0.531766 | 3.1:+52717521 | MS.gene53866:CDS |
| ACACGTTTCATTTGCGTGTG+AGG | 0.537464 | 3.1:+52717625 | MS.gene53866:CDS |
| AAGATTCGAATCTACGATGT+AGG | 0.541339 | 3.1:+52717465 | MS.gene53866:CDS |
| ACTTGTGCTAGGGTTAGTAT+TGG | 0.541416 | 3.1:+52717750 | MS.gene53866:CDS |
| GTTCCCATTCTGCGTCCACT+TGG | 0.544714 | 3.1:+52717512 | MS.gene53866:CDS |
| AGAACAGAATTATGCCGGAT+GGG | 0.546335 | 3.1:+52718442 | MS.gene53866:CDS |
| ACCGTTAGGGACTTGTGCTA+GGG | 0.551725 | 3.1:+52717740 | MS.gene53866:CDS |
| TTAATCCTCAACACATGGAA+AGG | 0.561933 | 3.1:-52717654 | None:intergenic |
| GACGATTGGCCAAAGGTCCA+TGG | 0.563505 | 3.1:-52718597 | None:intergenic |
| AGATTTCAACTTCAAGTACT+CGG | 0.571431 | 3.1:-52718418 | None:intergenic |
| CCACTTGGTATCATGGGAGA+AGG | 0.580044 | 3.1:+52717527 | MS.gene53866:CDS |
| ATATATTTCTAAGCAGACAT+TGG | 0.585277 | 3.1:-52718640 | None:intergenic |
| GGAGCTGATAGGTTACAGAC+GGG | 0.587606 | 3.1:+52717696 | MS.gene53866:CDS |
| GTTAGGTGTAAGAGTGGGAA+TGG | 0.592709 | 3.1:+52717789 | MS.gene53866:CDS |
| GAACAGAATTATGCCGGATG+GGG | 0.593803 | 3.1:+52718443 | MS.gene53866:CDS |
| AGGTTACAGACGGGGATGAG+AGG | 0.594052 | 3.1:+52717705 | MS.gene53866:CDS |
| GCCGGATGGGGTAAATGCAA+AGG | 0.604693 | 3.1:+52718455 | MS.gene53866:CDS |
| GAGAACAGAATTATGCCGGA+TGG | 0.605369 | 3.1:+52718441 | MS.gene53866:CDS |
| TCTTATTAATCCTCAACACA+TGG | 0.609244 | 3.1:-52717659 | None:intergenic |
| CAATAATCTTCTGACGCCCA+GGG | 0.610554 | 3.1:-52717854 | None:intergenic |
| TGGAGCTGATAGGTTACAGA+CGG | 0.613640 | 3.1:+52717695 | MS.gene53866:CDS |
| CCAGGCTGACGATTGGCCAA+AGG | 0.617677 | 3.1:-52718604 | None:intergenic |
| ATTTGCCGGTAACATCTCGC+CGG | 0.618985 | 3.1:-52717390 | None:intergenic |
| CCTTCTCCCATGATACCAAG+TGG | 0.622438 | 3.1:-52717527 | None:intergenic |
| GAATGGTGATCACGCTCAAG+AGG | 0.623254 | 3.1:+52717806 | MS.gene53866:CDS |
| ACCCTAGCACAAGTCCCTAA+CGG | 0.623661 | 3.1:-52717741 | None:intergenic |
| TTGTCTGTTAGGTGTAAGAG+TGG | 0.639530 | 3.1:+52717783 | MS.gene53866:CDS |
| GAGCTGATAGGTTACAGACG+GGG | 0.746975 | 3.1:+52717697 | MS.gene53866:CDS |
| TGTCTGTTAGGTGTAAGAGT+GGG | 0.747455 | 3.1:+52717784 | MS.gene53866:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTGTTTTCAATTTTTTA+GGG | + | chr3.1:52718374-52718393 | MS.gene53866:intron | 10.0% |
| !!! | TTAATTGTTTTCAATTTTTT+AGG | + | chr3.1:52718373-52718392 | MS.gene53866:intron | 10.0% |
| !! | AAAAAAGATTAAAATCTAGA+AGG | - | chr3.1:52717928-52717947 | None:intergenic | 15.0% |
| !! | ACATGATATCAATTTATTTA+AGG | + | chr3.1:52718490-52718509 | MS.gene53866:intron | 15.0% |
| !! | CATGATATCAATTTATTTAA+GGG | + | chr3.1:52718491-52718510 | MS.gene53866:intron | 15.0% |
| !!! | AATTGTTTTCAATTTTTTAG+GGG | + | chr3.1:52718375-52718394 | MS.gene53866:intron | 15.0% |
| !!! | AATTTTCAAGTACTAATATA+CGG | - | chr3.1:52718020-52718039 | None:intergenic | 15.0% |
| !!! | TAAACATTTTGATATTTGTT+AGG | + | chr3.1:52717366-52717385 | MS.gene53866:intron | 15.0% |
| !!! | TTCTAGATTTTAATCTTTTT+TGG | + | chr3.1:52717927-52717946 | MS.gene53866:intron | 15.0% |
| !! | ACATTAGAATAATTAGAGTT+GGG | - | chr3.1:52717342-52717361 | None:intergenic | 20.0% |
| !! | TACATTAGAATAATTAGAGT+TGG | - | chr3.1:52717343-52717362 | None:intergenic | 20.0% |
| !!! | TTAGAATTGCTTTAAAAACA+AGG | - | chr3.1:52718326-52718345 | None:intergenic | 20.0% |
| ! | ACCTCATCTATCAAAAAATA+TGG | - | chr3.1:52718535-52718554 | None:intergenic | 25.0% |
| ! | AGATTATTGTTAGTAGAAAG+TGG | + | chr3.1:52717868-52717887 | MS.gene53866:CDS | 25.0% |
| !! | AAAATTTTCCTGCATTTTTC+AGG | + | chr3.1:52718564-52718583 | MS.gene53866:intron | 25.0% |
| !! | TGTTTTCCTTTTTGTTAAAC+CGG | + | chr3.1:52718190-52718209 | MS.gene53866:intron | 25.0% |
| !!! | ACCATATTTTTTGATAGATG+AGG | + | chr3.1:52718531-52718550 | MS.gene53866:intron | 25.0% |
| !!! | ATTTTGATATTTGTTAGGAC+CGG | + | chr3.1:52717371-52717390 | MS.gene53866:intron | 25.0% |
| !!! | CAAAATTTTGATGTCAAACA+CGG | + | chr3.1:52717218-52717237 | MS.gene53866:intron | 25.0% |
| !!! | TCTCTAGAATTATAAGTTCA+AGG | + | chr3.1:52718070-52718089 | MS.gene53866:intron | 25.0% |
| AATGAGAGAATAAAAGAGAG+AGG | - | chr3.1:52717134-52717153 | None:intergenic | 30.0% | |
| AGATTTCAACTTCAAGTACT+CGG | - | chr3.1:52718421-52718440 | None:intergenic | 30.0% | |
| ATCAATTTATTTAAGGGAGC+TGG | + | chr3.1:52718497-52718516 | MS.gene53866:intron | 30.0% | |
| CAATCAAATCATAAGTTGTG+AGG | + | chr3.1:52718217-52718236 | MS.gene53866:intron | 30.0% | |
| CTCACAACTTATGATTTGAT+TGG | - | chr3.1:52718219-52718238 | None:intergenic | 30.0% | |
| TCTTATTAATCCTCAACACA+TGG | - | chr3.1:52717662-52717681 | None:intergenic | 30.0% | |
| !! | ATGGTTTGTTCTTTATTTGC+CGG | - | chr3.1:52717407-52717426 | None:intergenic | 30.0% |
| !!! | CATGCATGCTTTTGTTTTTT+TGG | + | chr3.1:52717976-52717995 | MS.gene53866:intron | 30.0% |
| AAGATTCGAATCTACGATGT+AGG | + | chr3.1:52717465-52717484 | MS.gene53866:CDS | 35.0% | |
| AAGTATATGTCGAAGTTTGC+TGG | + | chr3.1:52717597-52717616 | MS.gene53866:CDS | 35.0% | |
| ACACACAACACAACATCAAT+GGG | - | chr3.1:52717247-52717266 | None:intergenic | 35.0% | |
| ACATCGTAGATTCGAATCTT+TGG | - | chr3.1:52717465-52717484 | None:intergenic | 35.0% | |
| ATCTGAGAACAGAATTATGC+CGG | + | chr3.1:52718437-52718456 | MS.gene53866:CDS | 35.0% | |
| ATTTATTTAAGGGAGCTGGT+TGG | + | chr3.1:52718501-52718520 | MS.gene53866:intron | 35.0% | |
| TACACACAACACAACATCAA+TGG | - | chr3.1:52717248-52717267 | None:intergenic | 35.0% | |
| TAGATTCGAATCTTTGGATC+TGG | - | chr3.1:52717459-52717478 | None:intergenic | 35.0% | |
| TTAATCCTCAACACATGGAA+AGG | - | chr3.1:52717657-52717676 | None:intergenic | 35.0% | |
| ! | CTTATGATTTGATTGGTGTC+CGG | - | chr3.1:52718212-52718231 | None:intergenic | 35.0% |
| ! | TAACAGTGAGCTTCTACTTT+TGG | + | chr3.1:52718244-52718263 | MS.gene53866:intron | 35.0% |
| !! | GTTTGAGATTGTGAGTTGAT+CGG | + | chr3.1:52718109-52718128 | MS.gene53866:intron | 35.0% |
| AATAAGATGCTATCGTGTGC+TGG | + | chr3.1:52717675-52717694 | MS.gene53866:CDS | 40.0% | |
| AGAACAGAATTATGCCGGAT+GGG | + | chr3.1:52718442-52718461 | MS.gene53866:CDS | 40.0% | |
| CAAAATCGTGACTTTGGGTA+TGG | - | chr3.1:52717426-52717445 | None:intergenic | 40.0% | |
| GATGTAGGAGCGAAGAAAAA+AGG | + | chr3.1:52717480-52717499 | MS.gene53866:CDS | 40.0% | |
| TGGTGTCCGGTTTAACAAAA+AGG | - | chr3.1:52718199-52718218 | None:intergenic | 40.0% | |
| TGTCTGTTAGGTGTAAGAGT+GGG | + | chr3.1:52717784-52717803 | MS.gene53866:CDS | 40.0% | |
| TTCATCCTTTCCATGTGTTG+AGG | + | chr3.1:52717649-52717668 | MS.gene53866:CDS | 40.0% | |
| TTGTCTGTTAGGTGTAAGAG+TGG | + | chr3.1:52717783-52717802 | MS.gene53866:CDS | 40.0% | |
| ! | ACTTGTGCTAGGGTTAGTAT+TGG | + | chr3.1:52717750-52717769 | MS.gene53866:CDS | 40.0% |
| ! | GTGCTAAGTTTAAGTTCCCT+GGG | + | chr3.1:52717838-52717857 | MS.gene53866:CDS | 40.0% |
| !!! | CCTGCATTTTTCAGGTTCTT+GGG | + | chr3.1:52718572-52718591 | MS.gene53866:intron | 40.0% |
| !!! | TCCTGCATTTTTCAGGTTCT+TGG | + | chr3.1:52718571-52718590 | MS.gene53866:intron | 40.0% |
| ACAATAATCTTCTGACGCCC+AGG | - | chr3.1:52717858-52717877 | None:intergenic | 45.0% | |
| ACACGTTTCATTTGCGTGTG+AGG | + | chr3.1:52717625-52717644 | MS.gene53866:CDS | 45.0% | |
| ACCTTTGCATTTACCCCATC+CGG | - | chr3.1:52718459-52718478 | None:intergenic | 45.0% | |
| ATACCAAGTGGACGCAGAAT+GGG | - | chr3.1:52717518-52717537 | None:intergenic | 45.0% | |
| ATTGGCAAGAAAGCTCTTCC+AGG | - | chr3.1:52718625-52718644 | None:intergenic | 45.0% | |
| CAATAATCTTCTGACGCCCA+GGG | - | chr3.1:52717857-52717876 | None:intergenic | 45.0% | |
| CACGTTTCATTTGCGTGTGA+GGG | + | chr3.1:52717626-52717645 | MS.gene53866:CDS | 45.0% | |
| CCCAAGAACCTGAAAAATGC+AGG | - | chr3.1:52718575-52718594 | None:intergenic | 45.0% | |
| CGCGACAAAATCGTGACTTT+GGG | - | chr3.1:52717431-52717450 | None:intergenic | 45.0% | |
| GAACAGAATTATGCCGGATG+GGG | + | chr3.1:52718443-52718462 | MS.gene53866:CDS | 45.0% | |
| GAGAACAGAATTATGCCGGA+TGG | + | chr3.1:52718441-52718460 | MS.gene53866:CDS | 45.0% | |
| GTTAGGTGTAAGAGTGGGAA+TGG | + | chr3.1:52717789-52717808 | MS.gene53866:CDS | 45.0% | |
| TGGAGCTGATAGGTTACAGA+CGG | + | chr3.1:52717695-52717714 | MS.gene53866:CDS | 45.0% | |
| ! | CCAAAGTCACGATTTTGTCG+CGG | + | chr3.1:52717429-52717448 | MS.gene53866:CDS | 45.0% |
| ! | CGTGCTAAGTTTAAGTTCCC+TGG | + | chr3.1:52717837-52717856 | MS.gene53866:CDS | 45.0% |
| !! | TGCTAGGGTTAGTATTGGTC+AGG | + | chr3.1:52717755-52717774 | MS.gene53866:CDS | 45.0% |
| !!! | TTGTTATTAAAATATATTTA+TGG | - | chr3.1:52717201-52717220 | None:intergenic | 5.0% |
| AACCGTTAGGGACTTGTGCT+AGG | + | chr3.1:52717739-52717758 | MS.gene53866:CDS | 50.0% | |
| ACCCTAGCACAAGTCCCTAA+CGG | - | chr3.1:52717744-52717763 | None:intergenic | 50.0% | |
| ACCGTTAGGGACTTGTGCTA+GGG | + | chr3.1:52717740-52717759 | MS.gene53866:CDS | 50.0% | |
| ATTTGCCGGTAACATCTCGC+CGG | - | chr3.1:52717393-52717412 | None:intergenic | 50.0% | |
| CCACTTGGTATCATGGGAGA+AGG | + | chr3.1:52717527-52717546 | MS.gene53866:CDS | 50.0% | |
| CCGCGACAAAATCGTGACTT+TGG | - | chr3.1:52717432-52717451 | None:intergenic | 50.0% | |
| CCTTCTCCCATGATACCAAG+TGG | - | chr3.1:52717530-52717549 | None:intergenic | 50.0% | |
| CTGCGTCCACTTGGTATCAT+GGG | + | chr3.1:52717521-52717540 | MS.gene53866:CDS | 50.0% | |
| GAATGGTGATCACGCTCAAG+AGG | + | chr3.1:52717806-52717825 | MS.gene53866:CDS | 50.0% | |
| GAGCTGATAGGTTACAGACG+GGG | + | chr3.1:52717697-52717716 | MS.gene53866:CDS | 50.0% | |
| GATACCAAGTGGACGCAGAA+TGG | - | chr3.1:52717519-52717538 | None:intergenic | 50.0% | |
| GGAGCTGATAGGTTACAGAC+GGG | + | chr3.1:52717696-52717715 | MS.gene53866:CDS | 50.0% | |
| GTGCGTTTGGGAAACCGTTA+GGG | + | chr3.1:52717727-52717746 | MS.gene53866:CDS | 50.0% | |
| TATCGTGTGCTGGAGCTGAT+AGG | + | chr3.1:52717685-52717704 | MS.gene53866:CDS | 50.0% | |
| TCTGCGTCCACTTGGTATCA+TGG | + | chr3.1:52717520-52717539 | MS.gene53866:CDS | 50.0% | |
| !! | GTCAGGTGCTGTTGTCTGTT+AGG | + | chr3.1:52717772-52717791 | MS.gene53866:CDS | 50.0% |
| !! | TTTCAGGTTCTTGGGTGCCA+TGG | + | chr3.1:52718580-52718599 | MS.gene53866:intron | 50.0% |
| AGCTCTTCCAGGCTGACGAT+TGG | - | chr3.1:52718614-52718633 | None:intergenic | 55.0% | |
| AGGTTACAGACGGGGATGAG+AGG | + | chr3.1:52717705-52717724 | MS.gene53866:CDS | 55.0% | |
| GCCGGATGGGGTAAATGCAA+AGG | + | chr3.1:52718455-52718474 | MS.gene53866:CDS | 55.0% | |
| GGTGCGTTTGGGAAACCGTT+AGG | + | chr3.1:52717726-52717745 | MS.gene53866:CDS | 55.0% | |
| GTTCCCATTCTGCGTCCACT+TGG | + | chr3.1:52717512-52717531 | MS.gene53866:CDS | 55.0% | |
| TAGGACCGGCGAGATGTTAC+CGG | + | chr3.1:52717385-52717404 | MS.gene53866:intron | 55.0% | |
| ! | GACGATTGGCCAAAGGTCCA+TGG | - | chr3.1:52718600-52718619 | None:intergenic | 55.0% |
| ! | TCTTGGGTGCCATGGACCTT+TGG | + | chr3.1:52718588-52718607 | MS.gene53866:CDS | 55.0% |
| CCTTTGGCCAATCGTCAGCC+TGG | + | chr3.1:52718604-52718623 | MS.gene53866:CDS | 60.0% | |
| ! | ACGGGGATGAGAGGTGCGTT+TGG | + | chr3.1:52717714-52717733 | MS.gene53866:CDS | 60.0% |
| ! | CCAGGCTGACGATTGGCCAA+AGG | - | chr3.1:52718607-52718626 | None:intergenic | 60.0% |
| ! | CGGGGATGAGAGGTGCGTTT+GGG | + | chr3.1:52717715-52717734 | MS.gene53866:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 52717105 | 52718654 | 52717105 | ID=MS.gene53866 |
| chr3.1 | mRNA | 52717105 | 52718654 | 52717105 | ID=MS.gene53866.t1;Parent=MS.gene53866 |
| chr3.1 | exon | 52717105 | 52717114 | 52717105 | ID=MS.gene53866.t1.exon1;Parent=MS.gene53866.t1 |
| chr3.1 | CDS | 52717105 | 52717114 | 52717105 | ID=cds.MS.gene53866.t1;Parent=MS.gene53866.t1 |
| chr3.1 | exon | 52717388 | 52717889 | 52717388 | ID=MS.gene53866.t1.exon2;Parent=MS.gene53866.t1 |
| chr3.1 | CDS | 52717388 | 52717889 | 52717388 | ID=cds.MS.gene53866.t1;Parent=MS.gene53866.t1 |
| chr3.1 | exon | 52718395 | 52718476 | 52718395 | ID=MS.gene53866.t1.exon3;Parent=MS.gene53866.t1 |
| chr3.1 | CDS | 52718395 | 52718476 | 52718395 | ID=cds.MS.gene53866.t1;Parent=MS.gene53866.t1 |
| chr3.1 | exon | 52718586 | 52718654 | 52718586 | ID=MS.gene53866.t1.exon4;Parent=MS.gene53866.t1 |
| chr3.1 | CDS | 52718586 | 52718654 | 52718586 | ID=cds.MS.gene53866.t1;Parent=MS.gene53866.t1 |
| Gene Sequence |
| Protein sequence |
