Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049604.t1 | XP_003600557.1 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 4.70E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049604.t1 | Q9SPB3 | 89.8 | 216 | 22 | 0 | 1 | 216 | 1 | 216 | 1.2e-115 | 417.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049604.t1 | G7IV57 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 3.4e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049604 | MS.gene53866 | 0.955537 | 2.41E-113 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043476 | MS.gene049604 | PPI |
| MS.gene059339 | MS.gene049604 | PPI |
| MS.gene049604 | MS.gene049386 | PPI |
| MS.gene53866 | MS.gene049604 | PPI |
| MS.gene049604 | MS.gene013414 | PPI |
| MS.gene31405 | MS.gene049604 | PPI |
| MS.gene028847 | MS.gene049604 | PPI |
| MS.gene06510 | MS.gene049604 | PPI |
| MS.gene05113 | MS.gene049604 | PPI |
| MS.gene013414 | MS.gene049604 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049604.t1 | MTR_3g062600 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.49e-162 | 447 |
| MS.gene049604.t1 | MTR_2g090910 | 93.151 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 5.86e-153 | 423 |
| MS.gene049604.t1 | MTR_3g094230 | 92.694 | 219 | 16 | 0 | 1 | 219 | 1 | 219 | 1.45e-152 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049604.t1 | AT1G26910 | 86.364 | 220 | 30 | 0 | 1 | 220 | 1 | 220 | 4.84e-143 | 398 |
| MS.gene049604.t1 | AT1G14320 | 87.097 | 217 | 28 | 0 | 1 | 217 | 1 | 217 | 6.01e-143 | 398 |
| MS.gene049604.t1 | AT1G66580 | 85.455 | 220 | 32 | 0 | 1 | 220 | 1 | 220 | 4.63e-141 | 393 |
| MS.gene049604.t1 | AT1G26910 | 85.165 | 182 | 27 | 0 | 39 | 220 | 2 | 183 | 1.61e-114 | 325 |
| MS.gene049604.t1 | AT1G14320 | 78.571 | 84 | 18 | 0 | 134 | 217 | 40 | 123 | 1.68e-43 | 142 |
| MS.gene049604.t1 | AT1G14320 | 97.368 | 38 | 1 | 0 | 39 | 76 | 2 | 39 | 1.02e-19 | 81.6 |
Find 63 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCGTAGATTCGAATCTT+TGG | 0.292285 | 3.2:-58844152 | None:intergenic |
| TCTTGGGTGCCATGGACCTT+TGG | 0.343782 | 3.2:+58845284 | MS.gene049604:CDS |
| CGTGCTAAGTTTAAGTTCCC+TGG | 0.352955 | 3.2:+58844527 | MS.gene049604:CDS |
| GTCAGGTGCTGTTGTCTGTT+AGG | 0.361281 | 3.2:+58844462 | MS.gene049604:CDS |
| ACGGGGATGAGAGGTGCGTT+TGG | 0.374101 | 3.2:+58844404 | MS.gene049604:CDS |
| ATGGTTTGTTCTTTATTTGC+CGG | 0.389322 | 3.2:-58844094 | None:intergenic |
| ACCTTTGCATTTACCCCATC+CGG | 0.395333 | 3.2:-58845152 | None:intergenic |
| ATTGGCAAGAAAGCTCTTCC+AGG | 0.400977 | 3.2:-58845318 | None:intergenic |
| CCGCGACAAAATCGTGACTT+TGG | 0.406626 | 3.2:-58844119 | None:intergenic |
| AAGTATATGTCGAAGTTTGC+TGG | 0.409714 | 3.2:+58844287 | MS.gene049604:CDS |
| TGCTAGGGTTAGTATTGGTC+AGG | 0.412106 | 3.2:+58844445 | MS.gene049604:CDS |
| GGTGCGTTTGGGAAACCGTT+AGG | 0.413754 | 3.2:+58844416 | MS.gene049604:CDS |
| CGCGACAAAATCGTGACTTT+GGG | 0.417374 | 3.2:-58844118 | None:intergenic |
| TAGGACCGGCGAGATGTTAC+CGG | 0.419136 | 3.2:+58844075 | MS.gene049604:intron |
| TTTCAGGTTCTTGGGTGCCA+TGG | 0.433018 | 3.2:+58845276 | MS.gene049604:intron |
| CGGGGATGAGAGGTGCGTTT+GGG | 0.435241 | 3.2:+58844405 | MS.gene049604:CDS |
| TCTGCGTCCACTTGGTATCA+TGG | 0.437773 | 3.2:+58844210 | MS.gene049604:CDS |
| TAGATTCGAATCTTTGGATC+TGG | 0.447570 | 3.2:-58844146 | None:intergenic |
| CAAAATCGTGACTTTGGGTA+TGG | 0.448064 | 3.2:-58844113 | None:intergenic |
| AGATTATTGTTAGTAGAAAG+TGG | 0.459647 | 3.2:+58844558 | MS.gene049604:CDS |
| TAGTTGCTTACTTCTTCCCA+TGG | 0.476255 | 3.2:-58843810 | None:intergenic |
| TTCATCCTTTCCATGTGTTG+AGG | 0.481389 | 3.2:+58844339 | MS.gene049604:CDS |
| CACGTTTCATTTGCGTGTGA+GGG | 0.483204 | 3.2:+58844316 | MS.gene049604:CDS |
| GTGCGTTTGGGAAACCGTTA+GGG | 0.487868 | 3.2:+58844417 | MS.gene049604:CDS |
| ATACCAAGTGGACGCAGAAT+GGG | 0.497494 | 3.2:-58844205 | None:intergenic |
| CCTTTGGCCAATCGTCAGCC+TGG | 0.499139 | 3.2:+58845300 | MS.gene049604:CDS |
| TATCGTGTGCTGGAGCTGAT+AGG | 0.499734 | 3.2:+58844375 | MS.gene049604:CDS |
| ACAATAATCTTCTGACGCCC+AGG | 0.505154 | 3.2:-58844545 | None:intergenic |
| AACCGTTAGGGACTTGTGCT+AGG | 0.506463 | 3.2:+58844429 | MS.gene049604:CDS |
| GATACCAAGTGGACGCAGAA+TGG | 0.515306 | 3.2:-58844206 | None:intergenic |
| ATCTGAGAACAGAATTATGC+CGG | 0.523267 | 3.2:+58845133 | MS.gene049604:CDS |
| AATAAGATGCTATCGTGTGC+TGG | 0.523390 | 3.2:+58844365 | MS.gene049604:CDS |
| GTGCTAAGTTTAAGTTCCCT+GGG | 0.524046 | 3.2:+58844528 | MS.gene049604:CDS |
| AGCTCTTCCAGGCTGACGAT+TGG | 0.530968 | 3.2:-58845307 | None:intergenic |
| CTGCGTCCACTTGGTATCAT+GGG | 0.531766 | 3.2:+58844211 | MS.gene049604:CDS |
| ACACGTTTCATTTGCGTGTG+AGG | 0.537464 | 3.2:+58844315 | MS.gene049604:CDS |
| AAGATTCGAATCTACGATGT+AGG | 0.541339 | 3.2:+58844155 | MS.gene049604:CDS |
| ACTTGTGCTAGGGTTAGTAT+TGG | 0.541416 | 3.2:+58844440 | MS.gene049604:CDS |
| GTTCCCATTCTGCGTCCACT+TGG | 0.544714 | 3.2:+58844202 | MS.gene049604:CDS |
| AGAACAGAATTATGCCGGAT+GGG | 0.546335 | 3.2:+58845138 | MS.gene049604:CDS |
| ACCGTTAGGGACTTGTGCTA+GGG | 0.551725 | 3.2:+58844430 | MS.gene049604:CDS |
| TTAATCCTCAACACATGGAA+AGG | 0.561933 | 3.2:-58844344 | None:intergenic |
| GACGATTGGCCAAAGGTCCA+TGG | 0.563505 | 3.2:-58845293 | None:intergenic |
| AGATTTCAACTTCAAGTACT+CGG | 0.571431 | 3.2:-58845114 | None:intergenic |
| CCACTTGGTATCATGGGAGA+AGG | 0.580044 | 3.2:+58844217 | MS.gene049604:CDS |
| ATATATTTCTAAGCAGACAT+TGG | 0.585277 | 3.2:-58845336 | None:intergenic |
| GGAGCTGATAGGTTACAGAC+GGG | 0.587606 | 3.2:+58844386 | MS.gene049604:CDS |
| GTTAGGTGTAAGAGTGGGAA+TGG | 0.592709 | 3.2:+58844479 | MS.gene049604:CDS |
| GAACAGAATTATGCCGGATG+GGG | 0.593803 | 3.2:+58845139 | MS.gene049604:CDS |
| AGGTTACAGACGGGGATGAG+AGG | 0.594052 | 3.2:+58844395 | MS.gene049604:CDS |
| GCCGGATGGGGTAAATGCAA+AGG | 0.604693 | 3.2:+58845151 | MS.gene049604:CDS |
| GAGAACAGAATTATGCCGGA+TGG | 0.605369 | 3.2:+58845137 | MS.gene049604:CDS |
| TCTTATTAATCCTCAACACA+TGG | 0.609244 | 3.2:-58844349 | None:intergenic |
| CAATAATCTTCTGACGCCCA+GGG | 0.610554 | 3.2:-58844544 | None:intergenic |
| TGGAGCTGATAGGTTACAGA+CGG | 0.613640 | 3.2:+58844385 | MS.gene049604:CDS |
| CCAGGCTGACGATTGGCCAA+AGG | 0.617677 | 3.2:-58845300 | None:intergenic |
| ATTTGCCGGTAACATCTCGC+CGG | 0.618985 | 3.2:-58844080 | None:intergenic |
| CCTTCTCCCATGATACCAAG+TGG | 0.622438 | 3.2:-58844217 | None:intergenic |
| GAATGGTGATCACGCTCAAG+AGG | 0.623254 | 3.2:+58844496 | MS.gene049604:CDS |
| ACCCTAGCACAAGTCCCTAA+CGG | 0.623661 | 3.2:-58844431 | None:intergenic |
| TTGTCTGTTAGGTGTAAGAG+TGG | 0.639530 | 3.2:+58844473 | MS.gene049604:CDS |
| GAGCTGATAGGTTACAGACG+GGG | 0.746975 | 3.2:+58844387 | MS.gene049604:CDS |
| TGTCTGTTAGGTGTAAGAGT+GGG | 0.747455 | 3.2:+58844474 | MS.gene049604:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTGTTTTCAATTTTTTA+GGG | + | chr3.2:58845070-58845089 | MS.gene049604:intron | 10.0% |
| !!! | TTAATTGTTTTCAATTTTTT+AGG | + | chr3.2:58845069-58845088 | MS.gene049604:intron | 10.0% |
| !! | AAAAAAGATTAAAAACTAGA+AGG | - | chr3.2:58844618-58844637 | None:intergenic | 15.0% |
| !! | ACATGATATCAATTTATTTA+AGG | + | chr3.2:58845186-58845205 | MS.gene049604:intron | 15.0% |
| !! | CATGATATCAATTTATTTAA+GGG | + | chr3.2:58845187-58845206 | MS.gene049604:intron | 15.0% |
| !!! | AATTGTTTTCAATTTTTTAG+GGG | + | chr3.2:58845071-58845090 | MS.gene049604:intron | 15.0% |
| !!! | AATTTTCAAGTACTAATATA+CGG | - | chr3.2:58844711-58844730 | None:intergenic | 15.0% |
| !!! | TAAACATTTTGATATTTGTT+AGG | + | chr3.2:58844056-58844075 | MS.gene049604:intron | 15.0% |
| !!! | TTCTAGTTTTTAATCTTTTT+TGG | + | chr3.2:58844617-58844636 | MS.gene049604:intron | 15.0% |
| !! | ACATTAGAATAATTAGAGTT+GGG | - | chr3.2:58844032-58844051 | None:intergenic | 20.0% |
| !! | TACATTAGAATAATTAGAGT+TGG | - | chr3.2:58844033-58844052 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTTTTTGTTAAAC+CGG | + | chr3.2:58844881-58844900 | MS.gene049604:intron | 20.0% |
| !!! | TTAGAATTGCTTTAAAAACA+AGG | - | chr3.2:58845022-58845041 | None:intergenic | 20.0% |
| ! | AACTTAGACAATGATTTGAT+TGG | - | chr3.2:58844910-58844929 | None:intergenic | 25.0% |
| ! | ACCTCATCTATCAAAAAATA+TGG | - | chr3.2:58845231-58845250 | None:intergenic | 25.0% |
| ! | AGATTATTGTTAGTAGAAAG+TGG | + | chr3.2:58844558-58844577 | MS.gene049604:CDS | 25.0% |
| ! | TTAATGAGAGAATAAAAGAG+AGG | - | chr3.2:58843841-58843860 | None:intergenic | 25.0% |
| !! | AAAATTTTCCTGCATTTTTC+AGG | + | chr3.2:58845260-58845279 | MS.gene049604:intron | 25.0% |
| !!! | ACCATATTTTTTGATAGATG+AGG | + | chr3.2:58845227-58845246 | MS.gene049604:intron | 25.0% |
| !!! | ATGCATGCTTTTTGTTTTTA+TGG | + | chr3.2:58844667-58844686 | MS.gene049604:intron | 25.0% |
| !!! | ATTTTGATATTTGTTAGGAC+CGG | + | chr3.2:58844061-58844080 | MS.gene049604:intron | 25.0% |
| !!! | CAAAATTTTGATGTCAAACA+CGG | + | chr3.2:58843907-58843926 | MS.gene049604:intron | 25.0% |
| !!! | TCTCTAGAATTATAAGTTCA+AGG | + | chr3.2:58844761-58844780 | MS.gene049604:intron | 25.0% |
| AAATCATTGTCTAAGTTGTG+AGG | + | chr3.2:58844913-58844932 | MS.gene049604:intron | 30.0% | |
| AGATTTCAACTTCAAGTACT+CGG | - | chr3.2:58845117-58845136 | None:intergenic | 30.0% | |
| ATCAATTTATTTAAGGGAGC+TGG | + | chr3.2:58845193-58845212 | MS.gene049604:intron | 30.0% | |
| TCTTATTAATCCTCAACACA+TGG | - | chr3.2:58844352-58844371 | None:intergenic | 30.0% | |
| !! | ATGGTTTGTTCTTTATTTGC+CGG | - | chr3.2:58844097-58844116 | None:intergenic | 30.0% |
| AAGATTCGAATCTACGATGT+AGG | + | chr3.2:58844155-58844174 | MS.gene049604:CDS | 35.0% | |
| AAGTATATGTCGAAGTTTGC+TGG | + | chr3.2:58844287-58844306 | MS.gene049604:CDS | 35.0% | |
| ACACACAACACAACATCAAT+GGG | - | chr3.2:58843936-58843955 | None:intergenic | 35.0% | |
| ACATCGTAGATTCGAATCTT+TGG | - | chr3.2:58844155-58844174 | None:intergenic | 35.0% | |
| ATCTGAGAACAGAATTATGC+CGG | + | chr3.2:58845133-58845152 | MS.gene049604:CDS | 35.0% | |
| ATTTATTTAAGGGAGCTGGT+TGG | + | chr3.2:58845197-58845216 | MS.gene049604:intron | 35.0% | |
| TACACACAACACAACATCAA+TGG | - | chr3.2:58843937-58843956 | None:intergenic | 35.0% | |
| TAGATTCGAATCTTTGGATC+TGG | - | chr3.2:58844149-58844168 | None:intergenic | 35.0% | |
| TTAATCCTCAACACATGGAA+AGG | - | chr3.2:58844347-58844366 | None:intergenic | 35.0% | |
| ! | ACAATGATTTGATTGGTGTC+CGG | - | chr3.2:58844903-58844922 | None:intergenic | 35.0% |
| ! | TAACAGTGAGCTTCTACTTT+TGG | + | chr3.2:58844940-58844959 | MS.gene049604:intron | 35.0% |
| !! | GTTTGAGATTGTGAGTTGAT+CGG | + | chr3.2:58844800-58844819 | MS.gene049604:intron | 35.0% |
| AATAAGATGCTATCGTGTGC+TGG | + | chr3.2:58844365-58844384 | MS.gene049604:CDS | 40.0% | |
| AGAACAGAATTATGCCGGAT+GGG | + | chr3.2:58845138-58845157 | MS.gene049604:CDS | 40.0% | |
| CAAAATCGTGACTTTGGGTA+TGG | - | chr3.2:58844116-58844135 | None:intergenic | 40.0% | |
| GATGTAGGAGCGAAGAAAAA+AGG | + | chr3.2:58844170-58844189 | MS.gene049604:CDS | 40.0% | |
| TGTCTGTTAGGTGTAAGAGT+GGG | + | chr3.2:58844474-58844493 | MS.gene049604:CDS | 40.0% | |
| TTCATCCTTTCCATGTGTTG+AGG | + | chr3.2:58844339-58844358 | MS.gene049604:CDS | 40.0% | |
| TTGTCTGTTAGGTGTAAGAG+TGG | + | chr3.2:58844473-58844492 | MS.gene049604:CDS | 40.0% | |
| ! | ACTTGTGCTAGGGTTAGTAT+TGG | + | chr3.2:58844440-58844459 | MS.gene049604:CDS | 40.0% |
| ! | GTGCTAAGTTTAAGTTCCCT+GGG | + | chr3.2:58844528-58844547 | MS.gene049604:CDS | 40.0% |
| !!! | CCTGCATTTTTCAGGTTCTT+GGG | + | chr3.2:58845268-58845287 | MS.gene049604:intron | 40.0% |
| !!! | TCCTGCATTTTTCAGGTTCT+TGG | + | chr3.2:58845267-58845286 | MS.gene049604:intron | 40.0% |
| ACAATAATCTTCTGACGCCC+AGG | - | chr3.2:58844548-58844567 | None:intergenic | 45.0% | |
| ACACGTTTCATTTGCGTGTG+AGG | + | chr3.2:58844315-58844334 | MS.gene049604:CDS | 45.0% | |
| ACCTTTGCATTTACCCCATC+CGG | - | chr3.2:58845155-58845174 | None:intergenic | 45.0% | |
| ATACCAAGTGGACGCAGAAT+GGG | - | chr3.2:58844208-58844227 | None:intergenic | 45.0% | |
| ATTGGCAAGAAAGCTCTTCC+AGG | - | chr3.2:58845321-58845340 | None:intergenic | 45.0% | |
| CAATAATCTTCTGACGCCCA+GGG | - | chr3.2:58844547-58844566 | None:intergenic | 45.0% | |
| CACGTTTCATTTGCGTGTGA+GGG | + | chr3.2:58844316-58844335 | MS.gene049604:CDS | 45.0% | |
| CCCAAGAACCTGAAAAATGC+AGG | - | chr3.2:58845271-58845290 | None:intergenic | 45.0% | |
| CGCGACAAAATCGTGACTTT+GGG | - | chr3.2:58844121-58844140 | None:intergenic | 45.0% | |
| GAACAGAATTATGCCGGATG+GGG | + | chr3.2:58845139-58845158 | MS.gene049604:CDS | 45.0% | |
| GAGAACAGAATTATGCCGGA+TGG | + | chr3.2:58845137-58845156 | MS.gene049604:CDS | 45.0% | |
| GTTAGGTGTAAGAGTGGGAA+TGG | + | chr3.2:58844479-58844498 | MS.gene049604:CDS | 45.0% | |
| TGGAGCTGATAGGTTACAGA+CGG | + | chr3.2:58844385-58844404 | MS.gene049604:CDS | 45.0% | |
| ! | CCAAAGTCACGATTTTGTCG+CGG | + | chr3.2:58844119-58844138 | MS.gene049604:CDS | 45.0% |
| ! | CGTGCTAAGTTTAAGTTCCC+TGG | + | chr3.2:58844527-58844546 | MS.gene049604:CDS | 45.0% |
| !! | TGCTAGGGTTAGTATTGGTC+AGG | + | chr3.2:58844445-58844464 | MS.gene049604:CDS | 45.0% |
| !!! | TTGTTATTAAAATATATTTA+TGG | - | chr3.2:58843890-58843909 | None:intergenic | 5.0% |
| AACCGTTAGGGACTTGTGCT+AGG | + | chr3.2:58844429-58844448 | MS.gene049604:CDS | 50.0% | |
| ACCCTAGCACAAGTCCCTAA+CGG | - | chr3.2:58844434-58844453 | None:intergenic | 50.0% | |
| ACCGTTAGGGACTTGTGCTA+GGG | + | chr3.2:58844430-58844449 | MS.gene049604:CDS | 50.0% | |
| ATTTGCCGGTAACATCTCGC+CGG | - | chr3.2:58844083-58844102 | None:intergenic | 50.0% | |
| CCACTTGGTATCATGGGAGA+AGG | + | chr3.2:58844217-58844236 | MS.gene049604:CDS | 50.0% | |
| CCGCGACAAAATCGTGACTT+TGG | - | chr3.2:58844122-58844141 | None:intergenic | 50.0% | |
| CCTTCTCCCATGATACCAAG+TGG | - | chr3.2:58844220-58844239 | None:intergenic | 50.0% | |
| CTGCGTCCACTTGGTATCAT+GGG | + | chr3.2:58844211-58844230 | MS.gene049604:CDS | 50.0% | |
| GAATGGTGATCACGCTCAAG+AGG | + | chr3.2:58844496-58844515 | MS.gene049604:CDS | 50.0% | |
| GAGCTGATAGGTTACAGACG+GGG | + | chr3.2:58844387-58844406 | MS.gene049604:CDS | 50.0% | |
| GATACCAAGTGGACGCAGAA+TGG | - | chr3.2:58844209-58844228 | None:intergenic | 50.0% | |
| GGAGCTGATAGGTTACAGAC+GGG | + | chr3.2:58844386-58844405 | MS.gene049604:CDS | 50.0% | |
| GTGCGTTTGGGAAACCGTTA+GGG | + | chr3.2:58844417-58844436 | MS.gene049604:CDS | 50.0% | |
| TATCGTGTGCTGGAGCTGAT+AGG | + | chr3.2:58844375-58844394 | MS.gene049604:CDS | 50.0% | |
| TCTGCGTCCACTTGGTATCA+TGG | + | chr3.2:58844210-58844229 | MS.gene049604:CDS | 50.0% | |
| !! | GTCAGGTGCTGTTGTCTGTT+AGG | + | chr3.2:58844462-58844481 | MS.gene049604:CDS | 50.0% |
| !! | TTTCAGGTTCTTGGGTGCCA+TGG | + | chr3.2:58845276-58845295 | MS.gene049604:intron | 50.0% |
| AGCTCTTCCAGGCTGACGAT+TGG | - | chr3.2:58845310-58845329 | None:intergenic | 55.0% | |
| AGGTTACAGACGGGGATGAG+AGG | + | chr3.2:58844395-58844414 | MS.gene049604:CDS | 55.0% | |
| GCCGGATGGGGTAAATGCAA+AGG | + | chr3.2:58845151-58845170 | MS.gene049604:CDS | 55.0% | |
| GGTGCGTTTGGGAAACCGTT+AGG | + | chr3.2:58844416-58844435 | MS.gene049604:CDS | 55.0% | |
| GTTCCCATTCTGCGTCCACT+TGG | + | chr3.2:58844202-58844221 | MS.gene049604:CDS | 55.0% | |
| TAGGACCGGCGAGATGTTAC+CGG | + | chr3.2:58844075-58844094 | MS.gene049604:intron | 55.0% | |
| ! | GACGATTGGCCAAAGGTCCA+TGG | - | chr3.2:58845296-58845315 | None:intergenic | 55.0% |
| ! | TCTTGGGTGCCATGGACCTT+TGG | + | chr3.2:58845284-58845303 | MS.gene049604:CDS | 55.0% |
| CCTTTGGCCAATCGTCAGCC+TGG | + | chr3.2:58845300-58845319 | MS.gene049604:CDS | 60.0% | |
| ! | ACGGGGATGAGAGGTGCGTT+TGG | + | chr3.2:58844404-58844423 | MS.gene049604:CDS | 60.0% |
| ! | CCAGGCTGACGATTGGCCAA+AGG | - | chr3.2:58845303-58845322 | None:intergenic | 60.0% |
| ! | CGGGGATGAGAGGTGCGTTT+GGG | + | chr3.2:58844405-58844424 | MS.gene049604:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 58843812 | 58845350 | 58843812 | ID=MS.gene049604 |
| chr3.2 | mRNA | 58843812 | 58845350 | 58843812 | ID=MS.gene049604.t1;Parent=MS.gene049604 |
| chr3.2 | exon | 58843812 | 58843821 | 58843812 | ID=MS.gene049604.t1.exon1;Parent=MS.gene049604.t1 |
| chr3.2 | CDS | 58843812 | 58843821 | 58843812 | ID=cds.MS.gene049604.t1;Parent=MS.gene049604.t1 |
| chr3.2 | exon | 58844078 | 58844579 | 58844078 | ID=MS.gene049604.t1.exon2;Parent=MS.gene049604.t1 |
| chr3.2 | CDS | 58844078 | 58844579 | 58844078 | ID=cds.MS.gene049604.t1;Parent=MS.gene049604.t1 |
| chr3.2 | exon | 58845091 | 58845172 | 58845091 | ID=MS.gene049604.t1.exon3;Parent=MS.gene049604.t1 |
| chr3.2 | CDS | 58845091 | 58845172 | 58845091 | ID=cds.MS.gene049604.t1;Parent=MS.gene049604.t1 |
| chr3.2 | exon | 58845282 | 58845350 | 58845282 | ID=MS.gene049604.t1.exon4;Parent=MS.gene049604.t1 |
| chr3.2 | CDS | 58845282 | 58845350 | 58845282 | ID=cds.MS.gene049604.t1;Parent=MS.gene049604.t1 |
| Gene Sequence |
| Protein sequence |
