Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31405.t1 | XP_013465191.1 | 100 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 5.40E-128 | 466.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31405.t1 | Q9M5M7 | 95.4 | 218 | 10 | 0 | 1 | 218 | 1 | 218 | 5.0e-122 | 438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31405.t1 | G7ZUM0 | 100.0 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 3.9e-128 | 466.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene31405 | 0.80318 | 3.94E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene31405 | 0.840593 | 7.92E-58 | -1.69E-46 |
| MS.gene050290 | MS.gene31405 | 0.837296 | 5.65E-57 | -1.69E-46 |
| MS.gene050320 | MS.gene31405 | 0.826211 | 3.07E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene31405 | 0.838766 | 2.37E-57 | -1.69E-46 |
| MS.gene050838 | MS.gene31405 | 0.84862 | 5.46E-60 | -1.69E-46 |
| MS.gene050955 | MS.gene31405 | 0.837835 | 4.11E-57 | -1.69E-46 |
| MS.gene051063 | MS.gene31405 | 0.803745 | 3.01E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene31405 | 0.831331 | 1.77E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene31405 | 0.865721 | 4.81E-65 | -1.69E-46 |
| MS.gene051748 | MS.gene31405 | 0.863468 | 2.44E-64 | -1.69E-46 |
| MS.gene051756 | MS.gene31405 | 0.842189 | 3.01E-58 | -1.69E-46 |
| MS.gene051850 | MS.gene31405 | 0.857363 | 1.72E-62 | -1.69E-46 |
| MS.gene051903 | MS.gene31405 | 0.915193 | 7.87E-85 | -1.69E-46 |
| MS.gene052479 | MS.gene31405 | 0.844455 | 7.48E-59 | -1.69E-46 |
| MS.gene052947 | MS.gene31405 | 0.866625 | 2.49E-65 | -1.69E-46 |
| MS.gene053109 | MS.gene31405 | 0.825156 | 5.47E-54 | -1.69E-46 |
| MS.gene053952 | MS.gene31405 | 0.875605 | 2.70E-68 | -1.69E-46 |
| MS.gene054403 | MS.gene31405 | 0.839184 | 1.84E-57 | -1.69E-46 |
| MS.gene054937 | MS.gene31405 | 0.880682 | 4.49E-70 | -1.69E-46 |
| MS.gene055424 | MS.gene31405 | 0.813505 | 2.47E-51 | -1.69E-46 |
| MS.gene056075 | MS.gene31405 | 0.841169 | 5.59E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene31405 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene31405 | 0.851323 | 9.56E-61 | -1.69E-46 |
| MS.gene056896 | MS.gene31405 | 0.823997 | 1.02E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene31405 | 0.883588 | 3.95E-71 | -1.69E-46 |
| MS.gene057130 | MS.gene31405 | 0.81501 | 1.15E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene31405 | 0.83032 | 3.14E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene31405 | 0.824732 | 6.88E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene31405 | 0.806176 | 9.34E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene31405 | 0.811316 | 7.44E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene31405 | 0.829063 | 6.35E-55 | -1.69E-46 |
| MS.gene058354 | MS.gene31405 | 0.842851 | 2.01E-58 | -1.69E-46 |
| MS.gene058364 | MS.gene31405 | 0.82489 | 6.32E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene31405 | 0.802491 | 5.47E-49 | -1.69E-46 |
| MS.gene059726 | MS.gene31405 | 0.808526 | 2.97E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene31405 | 0.802088 | 6.62E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene31405 | 0.884466 | 1.87E-71 | -1.69E-46 |
| MS.gene06011 | MS.gene31405 | 0.837281 | 5.70E-57 | -1.69E-46 |
| MS.gene060917 | MS.gene31405 | 0.804256 | 2.36E-49 | -1.69E-46 |
| MS.gene061145 | MS.gene31405 | 0.813332 | 2.70E-51 | -1.69E-46 |
| MS.gene06118 | MS.gene31405 | 0.855635 | 5.53E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31405 | MS.gene53866 | PPI |
| MS.gene043476 | MS.gene31405 | PPI |
| MS.gene31405 | MS.gene06510 | PPI |
| MS.gene53866 | MS.gene31405 | PPI |
| MS.gene31405 | MS.gene049604 | PPI |
| MS.gene31405 | MS.gene059339 | PPI |
| MS.gene028847 | MS.gene31405 | PPI |
| MS.gene31405 | MS.gene049386 | PPI |
| MS.gene31405 | MS.gene05113 | PPI |
| MS.gene31405 | MS.gene013414 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31405.t1 | MTR_2g090910 | 100.000 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 5.62e-168 | 461 |
| MS.gene31405.t1 | MTR_3g094230 | 98.649 | 222 | 3 | 0 | 1 | 222 | 1 | 222 | 1.29e-165 | 456 |
| MS.gene31405.t1 | MTR_3g062600 | 93.119 | 218 | 15 | 0 | 1 | 218 | 1 | 218 | 3.61e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31405.t1 | AT1G26910 | 88.991 | 218 | 24 | 0 | 1 | 218 | 1 | 218 | 1.29e-146 | 407 |
| MS.gene31405.t1 | AT1G14320 | 88.532 | 218 | 25 | 0 | 1 | 218 | 1 | 218 | 2.07e-145 | 404 |
| MS.gene31405.t1 | AT1G66580 | 88.128 | 219 | 26 | 0 | 1 | 219 | 1 | 219 | 7.25e-145 | 403 |
| MS.gene31405.t1 | AT1G26910 | 87.845 | 181 | 22 | 0 | 38 | 218 | 1 | 181 | 9.30e-118 | 333 |
| MS.gene31405.t1 | AT1G14320 | 76.596 | 94 | 20 | 1 | 127 | 218 | 31 | 124 | 1.15e-45 | 148 |
| MS.gene31405.t1 | AT1G14320 | 97.436 | 39 | 1 | 0 | 38 | 76 | 1 | 39 | 1.91e-20 | 83.6 |
Find 64 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGACAGAATCGTGATTT+TGG | 0.179385 | 2.4:+9570643 | None:intergenic |
| ACATCGTAAATCCTGATCTT+AGG | 0.319740 | 2.4:+9570610 | None:intergenic |
| CTTTGACATGTACTTGTTGC+AGG | 0.330350 | 2.4:+9570483 | None:intergenic |
| GTTTCCTTTCTGTGTTCATC+TGG | 0.355959 | 2.4:-9570560 | MS.gene31405:CDS |
| CTGTGTTCATCTGGTCAGTT+GGG | 0.370061 | 2.4:-9570551 | MS.gene31405:CDS |
| ACTGGTATGAGAGGTGCTTT+TGG | 0.372976 | 2.4:-9570358 | MS.gene31405:CDS |
| ATGCATTCCACTTGAGAGTC+AGG | 0.376262 | 2.4:-9570447 | MS.gene31405:CDS |
| GTTTGTGCTAGAGTGGCTAT+TGG | 0.382737 | 2.4:-9570322 | MS.gene31405:CDS |
| TTTCATGTGCTGGTGCTGAT+AGG | 0.390293 | 2.4:-9570387 | MS.gene31405:CDS |
| TCTGTGTTCATCTGGTCAGT+TGG | 0.393251 | 2.4:-9570552 | MS.gene31405:CDS |
| ACCTTAGCATTCACCCCATC+GGG | 0.415318 | 2.4:+9570001 | None:intergenic |
| TTTGTGCTAGAGTGGCTATT+GGG | 0.420431 | 2.4:-9570321 | MS.gene31405:CDS |
| TTGCAGCTTCTTGGATGCCA+TGG | 0.430564 | 2.4:-9569754 | MS.gene31405:intron |
| CGATGTTGGCATGAAGAAGA+AGG | 0.456800 | 2.4:-9570593 | MS.gene31405:CDS |
| TGAGTATCTGAAGTTGAAAT+CGG | 0.458837 | 2.4:-9570038 | MS.gene31405:CDS |
| CATGTCAAAGTTTGCAGGAA+AGG | 0.460338 | 2.4:-9570470 | MS.gene31405:CDS |
| ATGGCTTGTTCTTAATTTGA+CGG | 0.461186 | 2.4:+9570668 | None:intergenic |
| CGTGCTAAGTTTAAGTTCCC+TGG | 0.464822 | 2.4:-9570235 | MS.gene31405:CDS |
| TGCTAGAGTGGCTATTGGGC+AGG | 0.472691 | 2.4:-9570317 | MS.gene31405:CDS |
| AAGTACATGTCAAAGTTTGC+AGG | 0.473692 | 2.4:-9570475 | MS.gene31405:CDS |
| TCTTGGATGCCATGGACCAT+TGG | 0.486612 | 2.4:-9569746 | MS.gene31405:CDS |
| TAAATCCTGATCTTAGGATC+AGG | 0.495721 | 2.4:+9570616 | None:intergenic |
| TACCTTAGCATTCACCCCAT+CGG | 0.499742 | 2.4:+9570000 | None:intergenic |
| TGCCAGCTGTAATGAGGCTT+AGG | 0.501937 | 2.4:-9569692 | None:intergenic |
| TTTGAATGCCAGCTGTAATG+AGG | 0.503491 | 2.4:-9569698 | MS.gene31405:CDS |
| TTAGGTCTTACTTCTTCCCA+TGG | 0.509780 | 2.4:+9572444 | None:intergenic |
| TCTTGTTGATCCTGAGTACA+TGG | 0.512666 | 2.4:+9570413 | None:intergenic |
| AACAAGATGCTTTCATGTGC+TGG | 0.512686 | 2.4:-9570397 | MS.gene31405:CDS |
| CCATTGGCTAACCGTCAACC+TGG | 0.512794 | 2.4:-9569730 | MS.gene31405:CDS |
| CAACAACAGCCACCATGCTC+AGG | 0.521206 | 2.4:-9570269 | MS.gene31405:CDS |
| GCTCCTTTCTGTCCGTTGCA+AGG | 0.530827 | 2.4:-9570293 | MS.gene31405:CDS |
| AGATCATCGTTAGCAGGAAG+TGG | 0.534059 | 2.4:-9570204 | MS.gene31405:intron |
| AGCCTAAGCCTCATTACAGC+TGG | 0.535691 | 2.4:+9569690 | None:intergenic |
| GTCAAAAGATCATCGTTAGC+AGG | 0.537568 | 2.4:-9570210 | MS.gene31405:CDS |
| TGTCCTTGCAACGGACAGAA+AGG | 0.541207 | 2.4:+9570290 | None:intergenic |
| GAGTTCCTGATCCTAAGATC+AGG | 0.544600 | 2.4:-9570621 | MS.gene31405:CDS |
| CCAGGTTGACGGTTAGCCAA+TGG | 0.544617 | 2.4:+9569730 | None:intergenic |
| TCAGGGTGTTTGTGCTAGAG+TGG | 0.548804 | 2.4:-9570329 | MS.gene31405:CDS |
| AAAACAGAATTATGCCCGAT+GGG | 0.552482 | 2.4:-9570015 | MS.gene31405:CDS |
| GACGGAGAGCCTCCTGAGCA+TGG | 0.554611 | 2.4:+9570257 | None:intergenic |
| AAGATCAGGATTTACGATGT+TGG | 0.557539 | 2.4:-9570607 | MS.gene31405:CDS |
| GACGGTTAGCCAATGGTCCA+TGG | 0.564761 | 2.4:+9569737 | None:intergenic |
| GGCTGTTGTTGTCCTTGCAA+CGG | 0.568368 | 2.4:+9570281 | None:intergenic |
| GGTGCTGATAGGCTTCAAAC+TGG | 0.570540 | 2.4:-9570376 | MS.gene31405:CDS |
| TCATCTGGTCAGTTGGGAGA+AGG | 0.572889 | 2.4:-9570545 | MS.gene31405:CDS |
| CTGACCAGATGAACACAGAA+AGG | 0.573863 | 2.4:+9570556 | None:intergenic |
| ATTTGACGGTAACACCTAGC+AGG | 0.579048 | 2.4:+9570682 | None:intergenic |
| TCAACTTCAGATACTCAGCT+CGG | 0.581935 | 2.4:+9570044 | None:intergenic |
| GCCCGATGGGGTGAATGCTA+AGG | 0.582072 | 2.4:-9570002 | MS.gene31405:intron |
| TTCATCCATTCCATGTACTC+AGG | 0.583517 | 2.4:-9570423 | MS.gene31405:CDS |
| TGCATTCCACTTGAGAGTCA+GGG | 0.588140 | 2.4:-9570446 | MS.gene31405:CDS |
| CAACAGCCACCATGCTCAGG+AGG | 0.593303 | 2.4:-9570266 | MS.gene31405:CDS |
| GTGAGGCACTTGAAGCTGCT+AGG | 0.594487 | 2.4:-9570510 | MS.gene31405:CDS |
| GATGAACCCTGACTCTCAAG+TGG | 0.599276 | 2.4:+9570440 | None:intergenic |
| AGGCTTCAAACTGGTATGAG+AGG | 0.600097 | 2.4:-9570367 | MS.gene31405:CDS |
| CCAAAATCACGATTCTGTCG+TGG | 0.626637 | 2.4:-9570643 | MS.gene31405:CDS |
| GAAAACAGAATTATGCCCGA+TGG | 0.626773 | 2.4:-9570016 | MS.gene31405:CDS |
| TTGATCCTGAGTACATGGAA+TGG | 0.632244 | 2.4:+9570418 | None:intergenic |
| GATGTTGGCATGAAGAAGAA+GGG | 0.638141 | 2.4:-9570592 | MS.gene31405:CDS |
| GAAGGAAAATGTCTCAAGTG+AGG | 0.670840 | 2.4:-9570527 | MS.gene31405:CDS |
| AAACAGAATTATGCCCGATG+GGG | 0.689778 | 2.4:-9570014 | MS.gene31405:CDS |
| GGAGAGCCTCCTGAGCATGG+TGG | 0.689789 | 2.4:+9570260 | None:intergenic |
| GGAACTTAAACTTAGCACGA+CGG | 0.721521 | 2.4:+9570239 | None:intergenic |
| ACTCTAGCACAAACACCCTG+AGG | 0.744760 | 2.4:+9570331 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAACAAATAATATATTAA+GGG | + | chr2.4:9570185-9570204 | None:intergenic | 10.0% |
| !! | ATTTCATAAAAATTAGTACT+TGG | + | chr2.4:9571107-9571126 | None:intergenic | 15.0% |
| !! | CTGTAACAAATAATATATTA+AGG | + | chr2.4:9570186-9570205 | None:intergenic | 15.0% |
| !! | TTAAATTAATTGAGAATTTG+AGG | - | chr2.4:9570057-9570076 | MS.gene31405:CDS | 15.0% |
| !! | TTACATTCAAAATATAAACA+GGG | + | chr2.4:9570850-9570869 | None:intergenic | 15.0% |
| !! | TTTCATAAAAATTAGTACTT+GGG | + | chr2.4:9571106-9571125 | None:intergenic | 15.0% |
| !!! | AGATATGATAATGTTTATAT+TGG | - | chr2.4:9569820-9569839 | MS.gene31405:intron | 15.0% |
| !!! | ATCATGTTTGTTTTATTTAT+AGG | - | chr2.4:9571429-9571448 | MS.gene31405:intron | 15.0% |
| !!! | GATTTGTGATTTAAAATTTA+GGG | - | chr2.4:9569922-9569941 | MS.gene31405:intron | 15.0% |
| !!! | TCATGTTTGTTTTATTTATA+GGG | - | chr2.4:9571430-9571449 | MS.gene31405:intron | 15.0% |
| !!! | TGATTTGTGATTTAAAATTT+AGG | - | chr2.4:9569921-9569940 | MS.gene31405:intron | 15.0% |
| !! | AAAGGTTTACTAAAACATAA+AGG | + | chr2.4:9570345-9570364 | None:intergenic | 20.0% |
| !! | AAATGAAATGAAGAAACAAA+TGG | + | chr2.4:9569769-9569788 | None:intergenic | 20.0% |
| !! | AATGATGATATTTATCCATA+CGG | - | chr2.4:9570541-9570560 | MS.gene31405:CDS | 20.0% |
| !! | AGAAATGAATGAAAATTAGA+AGG | + | chr2.4:9569720-9569739 | None:intergenic | 20.0% |
| !! | ATTGAAATAAAACGAATTCA+TGG | + | chr2.4:9569792-9569811 | None:intergenic | 20.0% |
| !! | CTATAATTAGAATTAGTACT+TGG | + | chr2.4:9570873-9570892 | None:intergenic | 20.0% |
| !! | GAAATGAATGAAAATTAGAA+GGG | + | chr2.4:9569719-9569738 | None:intergenic | 20.0% |
| !! | GTTACATTCAAAATATAAAC+AGG | + | chr2.4:9570851-9570870 | None:intergenic | 20.0% |
| !!! | AAAAGAACTTATAAGTTGAA+AGG | + | chr2.4:9572355-9572374 | None:intergenic | 20.0% |
| !!! | ACCTTTTTGATTTTTTATTG+CGG | - | chr2.4:9570359-9570378 | MS.gene31405:CDS | 20.0% |
| !!! | ATGTTAGTTTGGAATATATT+AGG | - | chr2.4:9572247-9572266 | MS.gene31405:intron | 20.0% |
| !!! | TGAATGTCATGATATTTTAA+TGG | - | chr2.4:9571337-9571356 | MS.gene31405:intron | 20.0% |
| !!! | TGTTAGTTTGGAATATATTA+GGG | - | chr2.4:9572248-9572267 | MS.gene31405:intron | 20.0% |
| ! | AAAAATAAGCTAATCCAAAC+GGG | + | chr2.4:9570120-9570139 | None:intergenic | 25.0% |
| ! | AACAACAATAAGTTAACACA+TGG | + | chr2.4:9572037-9572056 | None:intergenic | 25.0% |
| ! | ACAGTATAATCAGAATAGTA+AGG | + | chr2.4:9570971-9570990 | None:intergenic | 25.0% |
| ! | ACCGCAATAAAAAATCAAAA+AGG | + | chr2.4:9570363-9570382 | None:intergenic | 25.0% |
| ! | ATGAAAATTAGAAGGGAATT+AGG | + | chr2.4:9569712-9569731 | None:intergenic | 25.0% |
| ! | ATGATTATCCTATTATTGTG+TGG | - | chr2.4:9570237-9570256 | MS.gene31405:CDS | 25.0% |
| ! | CAAAAATAAGCTAATCCAAA+CGG | + | chr2.4:9570121-9570140 | None:intergenic | 25.0% |
| ! | GAACTAACAAACAATTACAA+TGG | + | chr2.4:9570263-9570282 | None:intergenic | 25.0% |
| ! | TAACTTGAATCATGTTAGTT+TGG | - | chr2.4:9572236-9572255 | MS.gene31405:intron | 25.0% |
| ! | TAATATATTAAGGGTCTGTT+TGG | + | chr2.4:9570176-9570195 | None:intergenic | 25.0% |
| ! | TCCATTATGTATTATGTGTT+GGG | + | chr2.4:9570459-9570478 | None:intergenic | 25.0% |
| !! | GTGATATTTCTGAATAATCA+CGG | + | chr2.4:9571220-9571239 | None:intergenic | 25.0% |
| !!! | TGTTTGTTATTGATGAATTC+AGG | - | chr2.4:9570300-9570319 | MS.gene31405:CDS | 25.0% |
| AACAGGGAATTAGTAACAAT+AGG | + | chr2.4:9570834-9570853 | None:intergenic | 30.0% | |
| AATCTGTTTGAACACTCAAA+TGG | - | chr2.4:9572293-9572312 | MS.gene31405:intron | 30.0% | |
| ACAAATCTACAATCGAAGTA+AGG | + | chr2.4:9571982-9572001 | None:intergenic | 30.0% | |
| ACGGTATAATCAGAATAGTA+AGG | + | chr2.4:9571201-9571220 | None:intergenic | 30.0% | |
| CTCCATTATGTATTATGTGT+TGG | + | chr2.4:9570460-9570479 | None:intergenic | 30.0% | |
| TAGTAAGATCAAATTGAGCA+TGG | + | chr2.4:9570431-9570450 | None:intergenic | 30.0% | |
| TCAGAAATATCACCATCTTT+CGG | - | chr2.4:9571227-9571246 | MS.gene31405:intron | 30.0% | |
| TCCAAAATATCACCATCTTT+CGG | - | chr2.4:9570997-9571016 | MS.gene31405:intron | 30.0% | |
| TCCCAACACATAATACATAA+TGG | - | chr2.4:9570455-9570474 | MS.gene31405:CDS | 30.0% | |
| TTAGTACTTGGGTATATCTA+TGG | + | chr2.4:9571095-9571114 | None:intergenic | 30.0% | |
| TTGTTTGTAATGCTTCTTCA+GGG | - | chr2.4:9572052-9572071 | MS.gene31405:intron | 30.0% | |
| ! | ATATTTTCTTCCTCATGCTA+AGG | - | chr2.4:9572198-9572217 | MS.gene31405:intron | 30.0% |
| ! | CTATCATTCTTTGTTGTCTT+TGG | - | chr2.4:9570493-9570512 | MS.gene31405:CDS | 30.0% |
| ! | TAGCTTGACATTTCGTTTTA+CGG | - | chr2.4:9570752-9570771 | MS.gene31405:intron | 30.0% |
| ! | TGAGTATCTGAAGTTGAAAT+CGG | - | chr2.4:9572097-9572116 | MS.gene31405:intron | 30.0% |
| !! | ATGGCTTGTTCTTAATTTGA+CGG | + | chr2.4:9571470-9571489 | None:intergenic | 30.0% |
| !!! | TTGATTTTTTATTGCGGTAG+TGG | - | chr2.4:9570365-9570384 | MS.gene31405:CDS | 30.0% |
| AAAACAGAATTATGCCCGAT+GGG | - | chr2.4:9572120-9572139 | MS.gene31405:intron | 35.0% | |
| AAGAGAGATCAGAAATTGGA+AGG | + | chr2.4:9569878-9569897 | None:intergenic | 35.0% | |
| AAGATCAGGATTTACGATGT+TGG | - | chr2.4:9571528-9571547 | MS.gene31405:intron | 35.0% | |
| AAGTACATGTCAAAGTTTGC+AGG | - | chr2.4:9571660-9571679 | MS.gene31405:intron | 35.0% | |
| ACATCGTAAATCCTGATCTT+AGG | + | chr2.4:9571528-9571547 | None:intergenic | 35.0% | |
| AGAGAGATCAGAAATTGGAA+GGG | + | chr2.4:9569877-9569896 | None:intergenic | 35.0% | |
| CGATTGTAGATTTGTAGTCT+GGG | - | chr2.4:9571987-9572006 | MS.gene31405:intron | 35.0% | |
| CTGAAAGAGAGATCAGAAAT+TGG | + | chr2.4:9569882-9569901 | None:intergenic | 35.0% | |
| GTTGTTTGTAATGCTTCTTC+AGG | - | chr2.4:9572051-9572070 | MS.gene31405:intron | 35.0% | |
| TAAATCCTGATCTTAGGATC+AGG | + | chr2.4:9571522-9571541 | None:intergenic | 35.0% | |
| TACAATGGCCACACAATAAT+AGG | + | chr2.4:9570248-9570267 | None:intergenic | 35.0% | |
| TATTAAGGGTCTGTTTGGAT+TGG | + | chr2.4:9570171-9570190 | None:intergenic | 35.0% | |
| TCATCAAAAACAGAACCGTA+TGG | + | chr2.4:9570559-9570578 | None:intergenic | 35.0% | |
| TCGATTGTAGATTTGTAGTC+TGG | - | chr2.4:9571986-9572005 | MS.gene31405:intron | 35.0% | |
| TGTTTGTAATGCTTCTTCAG+GGG | - | chr2.4:9572053-9572072 | MS.gene31405:intron | 35.0% | |
| TTCTAGACATCAGATACCAT+AGG | + | chr2.4:9570715-9570734 | None:intergenic | 35.0% | |
| ! | AGCTTGACATTTCGTTTTAC+GGG | - | chr2.4:9570753-9570772 | MS.gene31405:intron | 35.0% |
| ! | CAGAATCGTGATTTTGGATA+TGG | + | chr2.4:9571489-9571508 | None:intergenic | 35.0% |
| ! | GGGATAGATCAAACTTTTAC+AGG | - | chr2.4:9570774-9570793 | MS.gene31405:intron | 35.0% |
| ! | TGCTAACGATGATCTTTTGA+CGG | + | chr2.4:9571926-9571945 | None:intergenic | 35.0% |
| ! | TTTGTGATTTTGCAGCTTCT+TGG | - | chr2.4:9572372-9572391 | MS.gene31405:intron | 35.0% |
| !! | TTTTATTTATAGGGCCTGCT+AGG | - | chr2.4:9571439-9571458 | MS.gene31405:intron | 35.0% |
| !!! | TGTTCGTCAACTTTTTTACC+AGG | - | chr2.4:9570396-9570415 | MS.gene31405:CDS | 35.0% |
| AAACAGAATTATGCCCGATG+GGG | - | chr2.4:9572121-9572140 | MS.gene31405:intron | 40.0% | |
| AACAAGATGCTTTCATGTGC+TGG | - | chr2.4:9571738-9571757 | MS.gene31405:intron | 40.0% | |
| AAGTACATGTCCTTAGCATG+AGG | + | chr2.4:9572211-9572230 | None:intergenic | 40.0% | |
| CATGTCAAAGTTTGCAGGAA+AGG | - | chr2.4:9571665-9571684 | MS.gene31405:intron | 40.0% | |
| GAAAACAGAATTATGCCCGA+TGG | - | chr2.4:9572119-9572138 | MS.gene31405:intron | 40.0% | |
| GAAGGAAAATGTCTCAAGTG+AGG | - | chr2.4:9571608-9571627 | MS.gene31405:intron | 40.0% | |
| GAGAGATCAGAAATTGGAAG+GGG | + | chr2.4:9569876-9569895 | None:intergenic | 40.0% | |
| GATGTTGGCATGAAGAAGAA+GGG | - | chr2.4:9571543-9571562 | MS.gene31405:intron | 40.0% | |
| GCATTCAAAAAAGCTCTTCC+AGG | + | chr2.4:9572426-9572445 | None:intergenic | 40.0% | |
| GGAACTTAAACTTAGCACGA+CGG | + | chr2.4:9571899-9571918 | None:intergenic | 40.0% | |
| GTCAAAAGATCATCGTTAGC+AGG | - | chr2.4:9571925-9571944 | MS.gene31405:intron | 40.0% | |
| GTCACGGTGAATAAGAAACA+CGG | + | chr2.4:9569847-9569866 | None:intergenic | 40.0% | |
| GTTTCCTTTCTGTGTTCATC+TGG | - | chr2.4:9571575-9571594 | MS.gene31405:intron | 40.0% | |
| TCAACTTCAGATACTCAGCT+CGG | + | chr2.4:9572094-9572113 | None:intergenic | 40.0% | |
| TCTTGTTGATCCTGAGTACA+TGG | + | chr2.4:9571725-9571744 | None:intergenic | 40.0% | |
| TGCGTCATGTATATTGCCTA+TGG | - | chr2.4:9570696-9570715 | MS.gene31405:intron | 40.0% | |
| TTCATCCATTCCATGTACTC+AGG | - | chr2.4:9571712-9571731 | MS.gene31405:intron | 40.0% | |
| TTGATCCTGAGTACATGGAA+TGG | + | chr2.4:9571720-9571739 | None:intergenic | 40.0% | |
| TTTGAATGCCAGCTGTAATG+AGG | - | chr2.4:9572437-9572456 | MS.gene31405:intron | 40.0% | |
| TTTGTGCTAGAGTGGCTATT+GGG | - | chr2.4:9571814-9571833 | MS.gene31405:intron | 40.0% | |
| ! | AAAAAGCTCTTCCAGGTTGA+CGG | + | chr2.4:9572419-9572438 | None:intergenic | 40.0% |
| ! | ATAGCTTGCAAGAGATCAGA+TGG | + | chr2.4:9570600-9570619 | None:intergenic | 40.0% |
| ! | CTTTGACATGTACTTGTTGC+AGG | + | chr2.4:9571655-9571674 | None:intergenic | 40.0% |
| ! | GCCGAAAGATGGTGATATTT+TGG | + | chr2.4:9571001-9571020 | None:intergenic | 40.0% |
| ! | GCTTGACATTTCGTTTTACG+GGG | - | chr2.4:9570754-9570773 | MS.gene31405:intron | 40.0% |
| ! | TTTGTAGTCTGGGATTACTC+TGG | - | chr2.4:9571997-9572016 | MS.gene31405:intron | 40.0% |
| ! | TTTTGAATCAAGTGCCCGTT+TGG | - | chr2.4:9570103-9570122 | MS.gene31405:intron | 40.0% |
| AGATCATCGTTAGCAGGAAG+TGG | - | chr2.4:9571931-9571950 | MS.gene31405:intron | 45.0% | |
| AGGCTTCAAACTGGTATGAG+AGG | - | chr2.4:9571768-9571787 | MS.gene31405:intron | 45.0% | |
| ATGCAATCTCAGCCGAAAGA+TGG | + | chr2.4:9571242-9571261 | None:intergenic | 45.0% | |
| ATGCATTCCACTTGAGAGTC+AGG | - | chr2.4:9571688-9571707 | MS.gene31405:intron | 45.0% | |
| ATTTGACGGTAACACCTAGC+AGG | + | chr2.4:9571456-9571475 | None:intergenic | 45.0% | |
| CCAAAATCACGATTCTGTCG+TGG | - | chr2.4:9571492-9571511 | MS.gene31405:intron | 45.0% | |
| CGATGTTGGCATGAAGAAGA+AGG | - | chr2.4:9571542-9571561 | MS.gene31405:intron | 45.0% | |
| CTGACCAGATGAACACAGAA+AGG | + | chr2.4:9571582-9571601 | None:intergenic | 45.0% | |
| CTGTGTTCATCTGGTCAGTT+GGG | - | chr2.4:9571584-9571603 | MS.gene31405:intron | 45.0% | |
| GAGTTCCTGATCCTAAGATC+AGG | - | chr2.4:9571514-9571533 | MS.gene31405:intron | 45.0% | |
| GTTTGTGCTAGAGTGGCTAT+TGG | - | chr2.4:9571813-9571832 | MS.gene31405:intron | 45.0% | |
| TACCTTAGCATTCACCCCAT+CGG | + | chr2.4:9572138-9572157 | None:intergenic | 45.0% | |
| TCTGTGTTCATCTGGTCAGT+TGG | - | chr2.4:9571583-9571602 | MS.gene31405:intron | 45.0% | |
| TGCATTCCACTTGAGAGTCA+GGG | - | chr2.4:9571689-9571708 | MS.gene31405:intron | 45.0% | |
| ! | CCACGACAGAATCGTGATTT+TGG | + | chr2.4:9571495-9571514 | None:intergenic | 45.0% |
| ! | CGTGCTAAGTTTAAGTTCCC+TGG | - | chr2.4:9571900-9571919 | MS.gene31405:intron | 45.0% |
| ! | TTTTACAGGTCTTGCGACAC+AGG | - | chr2.4:9570788-9570807 | MS.gene31405:intron | 45.0% |
| !! | TTTCATGTGCTGGTGCTGAT+AGG | - | chr2.4:9571748-9571767 | MS.gene31405:intron | 45.0% |
| !!! | ACTGGTATGAGAGGTGCTTT+TGG | - | chr2.4:9571777-9571796 | MS.gene31405:intron | 45.0% |
| ACCTTAGCATTCACCCCATC+GGG | + | chr2.4:9572137-9572156 | None:intergenic | 50.0% | |
| ACTCTAGCACAAACACCCTG+AGG | + | chr2.4:9571807-9571826 | None:intergenic | 50.0% | |
| CTGCAATCTCAGCCGAAAGA+TGG | + | chr2.4:9571012-9571031 | None:intergenic | 50.0% | |
| GATGAACCCTGACTCTCAAG+TGG | + | chr2.4:9571698-9571717 | None:intergenic | 50.0% | |
| GGCTGTTGTTGTCCTTGCAA+CGG | + | chr2.4:9571857-9571876 | None:intergenic | 50.0% | |
| TCATCTGGTCAGTTGGGAGA+AGG | - | chr2.4:9571590-9571609 | MS.gene31405:intron | 50.0% | |
| TCTTGGATGCCATGGACCAT+TGG | - | chr2.4:9572389-9572408 | MS.gene31405:intron | 50.0% | |
| TGTCCTTGCAACGGACAGAA+AGG | + | chr2.4:9571848-9571867 | None:intergenic | 50.0% | |
| TTGCAGCTTCTTGGATGCCA+TGG | - | chr2.4:9572381-9572400 | MS.gene31405:intron | 50.0% | |
| TTGGAAGGGGTTGTCTGTCA+CGG | + | chr2.4:9569863-9569882 | None:intergenic | 50.0% | |
| ! | ACGATGATCTTTTGACGGCC+AGG | + | chr2.4:9571921-9571940 | None:intergenic | 50.0% |
| ! | AGGTGCTTTTGGTAAGCCTC+AGG | - | chr2.4:9571788-9571807 | MS.gene31405:intron | 50.0% |
| ! | CGATGATCTTTTGACGGCCA+GGG | + | chr2.4:9571920-9571939 | None:intergenic | 50.0% |
| ! | GGTGCTTTTGGTAAGCCTCA+GGG | - | chr2.4:9571789-9571808 | MS.gene31405:intron | 50.0% |
| ! | TCAGGGTGTTTGTGCTAGAG+TGG | - | chr2.4:9571806-9571825 | MS.gene31405:intron | 50.0% |
| !! | GGTGCTGATAGGCTTCAAAC+TGG | - | chr2.4:9571759-9571778 | MS.gene31405:intron | 50.0% |
| CAACAACAGCCACCATGCTC+AGG | - | chr2.4:9571866-9571885 | MS.gene31405:intron | 55.0% | |
| GCTCCTTTCTGTCCGTTGCA+AGG | - | chr2.4:9571842-9571861 | MS.gene31405:intron | 55.0% | |
| TGAGCATGGCAAACAGTGCC+TGG | + | chr2.4:9570417-9570436 | None:intergenic | 55.0% | |
| TGCTAGAGTGGCTATTGGGC+AGG | - | chr2.4:9571818-9571837 | MS.gene31405:intron | 55.0% | |
| ! | CCAGGTTGACGGTTAGCCAA+TGG | + | chr2.4:9572408-9572427 | None:intergenic | 55.0% |
| ! | CCATTGGCTAACCGTCAACC+TGG | - | chr2.4:9572405-9572424 | MS.gene31405:intron | 55.0% |
| ! | GACGGTTAGCCAATGGTCCA+TGG | + | chr2.4:9572401-9572420 | None:intergenic | 55.0% |
| ! | GTGAGGCACTTGAAGCTGCT+AGG | - | chr2.4:9571625-9571644 | MS.gene31405:intron | 55.0% |
| CAACAGCCACCATGCTCAGG+AGG | - | chr2.4:9571869-9571888 | MS.gene31405:intron | 60.0% | |
| GCCCGATGGGGTGAATGCTA+AGG | - | chr2.4:9572133-9572152 | MS.gene31405:intron | 60.0% | |
| GACGGAGAGCCTCCTGAGCA+TGG | + | chr2.4:9571881-9571900 | None:intergenic | 65.0% | |
| GGAGAGCCTCCTGAGCATGG+TGG | + | chr2.4:9571878-9571897 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 9569693 | 9572464 | 9569693 | ID=MS.gene31405 |
| chr2.4 | mRNA | 9569693 | 9572464 | 9569693 | ID=MS.gene31405.t1;Parent=MS.gene31405 |
| chr2.4 | exon | 9572455 | 9572464 | 9572455 | ID=MS.gene31405.t1.exon1;Parent=MS.gene31405.t1 |
| chr2.4 | CDS | 9572455 | 9572464 | 9572455 | ID=cds.MS.gene31405.t1;Parent=MS.gene31405.t1 |
| chr2.4 | exon | 9570205 | 9570706 | 9570205 | ID=MS.gene31405.t1.exon2;Parent=MS.gene31405.t1 |
| chr2.4 | CDS | 9570205 | 9570706 | 9570205 | ID=cds.MS.gene31405.t1;Parent=MS.gene31405.t1 |
| chr2.4 | exon | 9570003 | 9570084 | 9570003 | ID=MS.gene31405.t1.exon3;Parent=MS.gene31405.t1 |
| chr2.4 | CDS | 9570003 | 9570084 | 9570003 | ID=cds.MS.gene31405.t1;Parent=MS.gene31405.t1 |
| chr2.4 | exon | 9569693 | 9569770 | 9569693 | ID=MS.gene31405.t1.exon4;Parent=MS.gene31405.t1 |
| chr2.4 | CDS | 9569693 | 9569770 | 9569693 | ID=cds.MS.gene31405.t1;Parent=MS.gene31405.t1 |
| Gene Sequence |
| Protein sequence |
