Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013711.t1 | XP_013461353.1 | 95.8 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 2.00E-137 | 498.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013711.t1 | Q54GN8 | 72.7 | 260 | 71 | 0 | 1 | 260 | 1 | 260 | 2.0e-106 | 386.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013711.t1 | I3STA8 | 95.8 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 1.4e-137 | 498.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013711 | MS.gene07405 | PPI |
| MS.gene051451 | MS.gene013711 | PPI |
| MS.gene07704 | MS.gene013711 | PPI |
| MS.gene013711 | MS.gene85577 | PPI |
| MS.gene013711 | MS.gene89672 | PPI |
| MS.gene062254 | MS.gene013711 | PPI |
| MS.gene44230 | MS.gene013711 | PPI |
| MS.gene013711 | MS.gene004882 | PPI |
| MS.gene67460 | MS.gene013711 | PPI |
| MS.gene013711 | MS.gene012127 | PPI |
| MS.gene013711 | MS.gene064459 | PPI |
| MS.gene013711 | MS.gene64789 | PPI |
| MS.gene017622 | MS.gene013711 | PPI |
| MS.gene68079 | MS.gene013711 | PPI |
| MS.gene013711 | MS.gene59485 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013711.t1 | MTR_3g088865 | 95.769 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 0.0 | 503 |
| MS.gene013711.t1 | MTR_0508s0010 | 91.154 | 260 | 23 | 0 | 1 | 260 | 1 | 260 | 1.41e-179 | 494 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013711.t1 | AT5G06360 | 85.769 | 260 | 37 | 0 | 1 | 260 | 1 | 260 | 1.83e-170 | 471 |
Find 74 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGTTCCTGCATATCTTT+TGG | 0.216509 | 3.4:-82039628 | MS.gene013711:CDS |
| GGAACAGTCCCTTGGTATTA+AGG | 0.237262 | 3.4:-82040381 | MS.gene013711:intron |
| ACATTCAATCTAGAAATTAT+TGG | 0.300648 | 3.4:-82038634 | MS.gene013711:CDS |
| GAAGGAGAAGGCTGGGAAAT+GGG | 0.301706 | 3.4:-82039456 | MS.gene013711:CDS |
| GGAAGGAGAAGGCTGGGAAA+TGG | 0.307698 | 3.4:-82039457 | MS.gene013711:CDS |
| CAGGTAAATGTTAGCGAACT+TGG | 0.326690 | 3.4:-82038391 | MS.gene013711:CDS |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.337046 | 3.4:+82038235 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 3.4:+82038649 | None:intergenic |
| CGAATGAACCGCTCATACTT+TGG | 0.362723 | 3.4:+82038712 | None:intergenic |
| AGGTGTACATAGGGCCATTA+GGG | 0.368687 | 3.4:+82038599 | None:intergenic |
| GAGGTGTACATAGGGCCATT+AGG | 0.373392 | 3.4:+82038598 | None:intergenic |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 3.4:-82038579 | MS.gene013711:CDS |
| AACCATCCTCTTCCATTGCT+TGG | 0.381373 | 3.4:+82038777 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 3.4:-82039655 | MS.gene013711:CDS |
| AAATGTTAGCGAACTTGGTT+TGG | 0.420710 | 3.4:-82038386 | MS.gene013711:CDS |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.421246 | 3.4:+82038236 | None:intergenic |
| GAGCGGTTCATTCGCCCTAC+TGG | 0.430434 | 3.4:-82038703 | MS.gene013711:CDS |
| GCACTCTAAACAGGCCCAAC+AGG | 0.431241 | 3.4:-82040493 | MS.gene013711:intron |
| AGCTCACAAGCACTCTAAAC+AGG | 0.437905 | 3.4:-82040502 | MS.gene013711:CDS |
| TGGATCACGAAGATAAAATT+CGG | 0.447870 | 3.4:-82040542 | MS.gene013711:CDS |
| TTACCAAAGCTACGTTTGTT+GGG | 0.448001 | 3.4:-82038756 | MS.gene013711:CDS |
| GGCCCTATGTACACCTCTCT+TGG | 0.470350 | 3.4:-82038592 | MS.gene013711:CDS |
| GAACAGTCCCTTGGTATTAA+GGG | 0.470500 | 3.4:-82040380 | MS.gene013711:intron |
| AAAGCTACGTTTGTTGGGCC+TGG | 0.474081 | 3.4:-82038751 | MS.gene013711:CDS |
| CTTGGTTTGGTTACACCGGC+AGG | 0.474888 | 3.4:-82038373 | MS.gene013711:CDS |
| CTAGCCGCAAAATGAGCATA+TGG | 0.475469 | 3.4:-82040595 | MS.gene013711:intron |
| AGGCCCAACAAACGTAGCTT+TGG | 0.479383 | 3.4:+82038753 | None:intergenic |
| GTTACCAAAGCTACGTTTGT+TGG | 0.484389 | 3.4:-82038757 | MS.gene013711:CDS |
| TGATTTGAATTAAACCTGTT+GGG | 0.490869 | 3.4:+82040479 | None:intergenic |
| TCATTCGCCCTACTGGATTG+AGG | 0.491508 | 3.4:-82038696 | MS.gene013711:CDS |
| ATGAACCGCTCATACTTTGG+AGG | 0.495101 | 3.4:+82038715 | None:intergenic |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 3.4:+82039252 | None:intergenic |
| GCAACACCATTAAGCAAAAG+AGG | 0.504420 | 3.4:-82039478 | MS.gene013711:CDS |
| AAAAGAGGAAGGAGAAGGCT+GGG | 0.512948 | 3.4:-82039463 | MS.gene013711:CDS |
| ATTCCACTGGAACAGTCCCT+TGG | 0.512987 | 3.4:-82040389 | MS.gene013711:intron |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 3.4:+82038561 | None:intergenic |
| CCCCACACAACTTTCCCTGC+CGG | 0.519424 | 3.4:+82038358 | None:intergenic |
| CAAAAGAGGAAGGAGAAGGC+TGG | 0.524008 | 3.4:-82039464 | MS.gene013711:CDS |
| CGCAATCTCACCTTAGGTAG+AGG | 0.525741 | 3.4:+82039428 | None:intergenic |
| TCACGATCCAAAAGATATGC+AGG | 0.530672 | 3.4:+82039621 | None:intergenic |
| CACCGGCAGGGAAAGTTGTG+TGG | 0.551474 | 3.4:-82038360 | MS.gene013711:CDS |
| TTGCAGCCAAGCAATGGAAG+AGG | 0.553612 | 3.4:-82038783 | MS.gene013711:intron |
| CACCAAGAGAGGTGTACATA+GGG | 0.554572 | 3.4:+82038590 | None:intergenic |
| ATGGGATGTTCCTCTACCTA+AGG | 0.559228 | 3.4:-82039438 | MS.gene013711:intron |
| ACACCAAGAGAGGTGTACAT+AGG | 0.561851 | 3.4:+82038589 | None:intergenic |
| ACCAACAACCCAGAAAATGA+TGG | 0.563594 | 3.4:-82038228 | MS.gene013711:CDS |
| ACCGGCAGGGAAAGTTGTGT+GGG | 0.567026 | 3.4:-82038359 | MS.gene013711:CDS |
| AGATAAAATTCGGAAGAAAG+AGG | 0.570810 | 3.4:-82040532 | MS.gene013711:CDS |
| TTAGTGAACCTCAATCCAGT+AGG | 0.577477 | 3.4:+82038688 | None:intergenic |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 3.4:-82039234 | MS.gene013711:CDS |
| GGCTGATGATAATGTTCAGG+AGG | 0.580998 | 3.4:-82039652 | MS.gene013711:CDS |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 3.4:-82038563 | MS.gene013711:intron |
| TGAGAACACAACACGAGCAA+AGG | 0.595295 | 3.4:-82039601 | MS.gene013711:intron |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 3.4:-82038578 | MS.gene013711:CDS |
| CACCATTAAGCAAAAGAGGA+AGG | 0.600141 | 3.4:-82039474 | MS.gene013711:CDS |
| CGAACTTGGTTTGGTTACAC+CGG | 0.600179 | 3.4:-82038377 | MS.gene013711:CDS |
| GAATGCAGGTAAATATGCCC+AGG | 0.602897 | 3.4:-82038253 | MS.gene013711:intron |
| ATTTCCTTAGGTACGTCCTG+TGG | 0.610316 | 3.4:-82039268 | MS.gene013711:intron |
| AGATGTTGACTCATCATGCA+TGG | 0.617671 | 3.4:+82039683 | None:intergenic |
| TGCATGATGAGTCAACATCT+AGG | 0.617897 | 3.4:-82039680 | MS.gene013711:CDS |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 3.4:-82038577 | MS.gene013711:CDS |
| TAAGCAAAAGAGGAAGGAGA+AGG | 0.630601 | 3.4:-82039468 | MS.gene013711:CDS |
| TCATCTTACCCTTAATACCA+AGG | 0.634675 | 3.4:+82040372 | None:intergenic |
| TAGTGAACCTCAATCCAGTA+GGG | 0.635011 | 3.4:+82038689 | None:intergenic |
| TTGGTTTGGTTACACCGGCA+GGG | 0.636596 | 3.4:-82038372 | MS.gene013711:CDS |
| CATCTTACCCTTAATACCAA+GGG | 0.636802 | 3.4:+82040373 | None:intergenic |
| TGAGTCAACATCTAGGCGCA+AGG | 0.649808 | 3.4:-82039673 | MS.gene013711:CDS |
| AGCCAAGCAATGGAAGAGGA+TGG | 0.659521 | 3.4:-82038779 | MS.gene013711:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 3.4:+82038579 | None:intergenic |
| GCTGATGATAATGTTCAGGA+GGG | 0.669436 | 3.4:-82039651 | MS.gene013711:CDS |
| GAAAACCTCCAAAGTATGAG+CGG | 0.683082 | 3.4:-82038720 | MS.gene013711:CDS |
| TATCTTCGTGATCCAAACGG+CGG | 0.702807 | 3.4:+82040550 | None:intergenic |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 3.4:-82039244 | MS.gene013711:CDS |
| CCGGCAGGGAAAGTTGTGTG+GGG | 0.732167 | 3.4:-82038358 | MS.gene013711:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATTTATCAAATGA+TGG | - | chr3.4:82039975-82039994 | MS.gene013711:intron | 10.0% |
| !!! | AGTTAATTATAACTTTAAAA+AGG | + | chr3.4:82039608-82039627 | None:intergenic | 10.0% |
| !!! | ATTTTAATTTATCAAATGAT+GGG | - | chr3.4:82039976-82039995 | MS.gene013711:intron | 10.0% |
| !! | AAATTATAAGAGAAACTATT+AGG | - | chr3.4:82038843-82038862 | MS.gene013711:intron | 15.0% |
| !!! | ATATTTTCATAAATCTAACT+GGG | - | chr3.4:82038490-82038509 | MS.gene013711:intron | 15.0% |
| !!! | TATATTTTCATAAATCTAAC+TGG | - | chr3.4:82038489-82038508 | MS.gene013711:intron | 15.0% |
| !! | AAACAAAGAAAAACATAAAC+AGG | + | chr3.4:82038247-82038266 | None:intergenic | 20.0% |
| !! | ACATTCAATCTAGAAATTAT+TGG | - | chr3.4:82040278-82040297 | MS.gene013711:intron | 20.0% |
| !! | ATTTCTTGTTCTTATAATTG+AGG | - | chr3.4:82040379-82040398 | MS.gene013711:intron | 20.0% |
| !! | TTTCTTGTTCTTATAATTGA+GGG | - | chr3.4:82040380-82040399 | MS.gene013711:intron | 20.0% |
| !!! | AATCAAGCACAAATTTTTAT+TGG | + | chr3.4:82038719-82038738 | None:intergenic | 20.0% |
| !!! | ATATTTTCTCAGTTCTTTAA+AGG | - | chr3.4:82039893-82039912 | MS.gene013711:intron | 20.0% |
| !!! | GTTTCTCTTATAATTTTTCA+AGG | + | chr3.4:82038839-82038858 | None:intergenic | 20.0% |
| !!! | TATTTTTGTGACTTGTATTT+TGG | - | chr3.4:82040582-82040601 | MS.gene013711:CDS | 20.0% |
| ! | AAACTTACAAGAATATGCAA+GGG | + | chr3.4:82039380-82039399 | None:intergenic | 25.0% |
| ! | ATAAGAGAAACTATTAGGAA+AGG | - | chr3.4:82038848-82038867 | MS.gene013711:intron | 25.0% |
| ! | ATGATCATTTCCTTTCTAAA+GGG | + | chr3.4:82039557-82039576 | None:intergenic | 25.0% |
| ! | GTTATAATTAACTGTATGTG+TGG | - | chr3.4:82039615-82039634 | MS.gene013711:CDS | 25.0% |
| ! | GTTGTTGTATTTCTTCAATA+TGG | - | chr3.4:82039094-82039113 | MS.gene013711:intron | 25.0% |
| ! | TAAACTTACAAGAATATGCA+AGG | + | chr3.4:82039381-82039400 | None:intergenic | 25.0% |
| ! | TATATCCATAAACAATAGGA+GGG | + | chr3.4:82039861-82039880 | None:intergenic | 25.0% |
| ! | TATTAGGAAAGGTTTATGAT+AGG | - | chr3.4:82038859-82038878 | MS.gene013711:intron | 25.0% |
| ! | TGATTTGAATTAAACCTGTT+GGG | + | chr3.4:82038436-82038455 | None:intergenic | 25.0% |
| ! | TGTGCTTGATTTCTTAAATA+TGG | - | chr3.4:82038728-82038747 | MS.gene013711:CDS | 25.0% |
| ! | TTCTTGTTCTTATAATTGAG+GGG | - | chr3.4:82040381-82040400 | MS.gene013711:intron | 25.0% |
| ! | TTTAGAAAGGAAATGATCAT+CGG | - | chr3.4:82039557-82039576 | MS.gene013711:intron | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr3.4:82039700-82039719 | None:intergenic | 25.0% |
| !! | TAATACATCCATCATTTTCT+GGG | + | chr3.4:82040695-82040714 | None:intergenic | 25.0% |
| !! | TCTTAAATATGGTGGAAAAT+AGG | - | chr3.4:82038739-82038758 | MS.gene013711:CDS | 25.0% |
| !! | TTAATACATCCATCATTTTC+TGG | + | chr3.4:82040696-82040715 | None:intergenic | 25.0% |
| !! | TTGTTATTATCACAACTTGT+TGG | - | chr3.4:82040474-82040493 | MS.gene013711:intron | 25.0% |
| !!! | TTTTTCGGCATAATTTTTCT+TGG | + | chr3.4:82038569-82038588 | None:intergenic | 25.0% |
| AAACAGAATCAGAAAAAGCA+TGG | + | chr3.4:82038276-82038295 | None:intergenic | 30.0% | |
| AGATAAAATTCGGAAGAAAG+AGG | - | chr3.4:82038380-82038399 | MS.gene013711:CDS | 30.0% | |
| AGGTTTATGATAGGTCATTA+TGG | - | chr3.4:82038868-82038887 | MS.gene013711:intron | 30.0% | |
| AGTATCACATTTATTGCTTC+TGG | - | chr3.4:82039715-82039734 | MS.gene013711:intron | 30.0% | |
| CTATATCCATAAACAATAGG+AGG | + | chr3.4:82039862-82039881 | None:intergenic | 30.0% | |
| CTGAGAAAATATAGATTTCC+TGG | + | chr3.4:82039885-82039904 | None:intergenic | 30.0% | |
| CTTAACACATTTCAATCATG+TGG | + | chr3.4:82039780-82039799 | None:intergenic | 30.0% | |
| GATGATCATTTCCTTTCTAA+AGG | + | chr3.4:82039558-82039577 | None:intergenic | 30.0% | |
| GATGTGTATAATCTGTAGTA+AGG | - | chr3.4:82038790-82038809 | MS.gene013711:intron | 30.0% | |
| GCTTGATTTCTTAAATATGG+TGG | - | chr3.4:82038731-82038750 | MS.gene013711:CDS | 30.0% | |
| GTGATTTGAATTAAACCTGT+TGG | + | chr3.4:82038437-82038456 | None:intergenic | 30.0% | |
| GTGTTAGATAATGATTAGCA+CGG | - | chr3.4:82039149-82039168 | MS.gene013711:intron | 30.0% | |
| TATGTTCATTAAAGAGTTGC+TGG | - | chr3.4:82039123-82039142 | MS.gene013711:intron | 30.0% | |
| TATTGTTTATGGATATAGCC+AGG | - | chr3.4:82039864-82039883 | MS.gene013711:intron | 30.0% | |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr3.4:82039668-82039687 | MS.gene013711:CDS | 30.0% | |
| TGGATCACGAAGATAAAATT+CGG | - | chr3.4:82038370-82038389 | MS.gene013711:CDS | 30.0% | |
| TGGCTATATCCATAAACAAT+AGG | + | chr3.4:82039865-82039884 | None:intergenic | 30.0% | |
| TGTTATCATGCAGAATTGAA+AGG | - | chr3.4:82039336-82039355 | MS.gene013711:intron | 30.0% | |
| TTTAGGTGATATTGATGCAT+TGG | - | chr3.4:82040621-82040640 | MS.gene013711:intron | 30.0% | |
| ! | AACAGAATCAGAAAAAGCAT+GGG | + | chr3.4:82038275-82038294 | None:intergenic | 30.0% |
| ! | AGAACGTATCAGTATTGAAA+AGG | + | chr3.4:82040454-82040473 | None:intergenic | 30.0% |
| ! | ATCAGTATTGAAAAGGTCAA+AGG | + | chr3.4:82040447-82040466 | None:intergenic | 30.0% |
| ! | TCAGTATTGAAAAGGTCAAA+GGG | + | chr3.4:82040446-82040465 | None:intergenic | 30.0% |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr3.4:82040266-82040285 | None:intergenic | 30.0% |
| ! | TTTTATCTTCGTGATCCAAA+CGG | + | chr3.4:82038368-82038387 | None:intergenic | 30.0% |
| !! | ACTCATTCTAAGATGCATTA+AGG | + | chr3.4:82038634-82038653 | None:intergenic | 30.0% |
| !! | ATCAAATGATGGGTTTGTAA+GGG | - | chr3.4:82039986-82040005 | MS.gene013711:intron | 30.0% |
| !! | TATCAAATGATGGGTTTGTA+AGG | - | chr3.4:82039985-82040004 | MS.gene013711:intron | 30.0% |
| !!! | ATCTTGTTTTGTCAACAGTT+TGG | - | chr3.4:82039206-82039225 | MS.gene013711:intron | 30.0% |
| !!! | TGCTTTTTTTCCCTTTAGAA+AGG | - | chr3.4:82039544-82039563 | MS.gene013711:intron | 30.0% |
| AAATGTTAGCGAACTTGGTT+TGG | - | chr3.4:82040526-82040545 | MS.gene013711:CDS | 35.0% | |
| AATACTATGAGATCTGCTTC+TGG | + | chr3.4:82040097-82040116 | None:intergenic | 35.0% | |
| AATTTCCGTGACTTAAGAGT+TGG | + | chr3.4:82039959-82039978 | None:intergenic | 35.0% | |
| AGGGAAAAAAAGCAGCATAA+TGG | + | chr3.4:82039538-82039557 | None:intergenic | 35.0% | |
| AGTAAGGAGAGTAAATCAGA+TGG | - | chr3.4:82038806-82038825 | MS.gene013711:intron | 35.0% | |
| AGTTCCTTGTTAGCATGTTA+CGG | - | chr3.4:82040038-82040057 | MS.gene013711:intron | 35.0% | |
| CATCTTACCCTTAATACCAA+GGG | + | chr3.4:82038542-82038561 | None:intergenic | 35.0% | |
| CGTAATTTGATTCATGTAGC+CGG | - | chr3.4:82038891-82038910 | MS.gene013711:intron | 35.0% | |
| GAAGCAGATCTCATAGTATT+TGG | - | chr3.4:82040097-82040116 | MS.gene013711:intron | 35.0% | |
| GGGAAAAAAAGCAGCATAAT+GGG | + | chr3.4:82039537-82039556 | None:intergenic | 35.0% | |
| TACCTGAAATTACAGTAAGC+AGG | + | chr3.4:82040507-82040526 | None:intergenic | 35.0% | |
| TAGATAATGATTAGCACGGT+AGG | - | chr3.4:82039153-82039172 | MS.gene013711:intron | 35.0% | |
| TCATCTTACCCTTAATACCA+AGG | + | chr3.4:82038543-82038562 | None:intergenic | 35.0% | |
| TGCTTCTGGTATTATGATCT+TGG | - | chr3.4:82039729-82039748 | MS.gene013711:intron | 35.0% | |
| TTACCAAAGCTACGTTTGTT+GGG | - | chr3.4:82040156-82040175 | MS.gene013711:intron | 35.0% | |
| TTCATTAAAGAGTTGCTGGT+TGG | - | chr3.4:82039127-82039146 | MS.gene013711:intron | 35.0% | |
| TTCCTGCTTACTGTAATTTC+AGG | - | chr3.4:82040502-82040521 | MS.gene013711:CDS | 35.0% | |
| ! | ACTTTTGCACTCGCAATTTA+AGG | - | chr3.4:82040406-82040425 | MS.gene013711:intron | 35.0% |
| ! | AGTATTGAAAAGGTCAAAGG+GGG | + | chr3.4:82040444-82040463 | None:intergenic | 35.0% |
| ! | ATATGGTGGAAAATAGGCTT+AGG | - | chr3.4:82038745-82038764 | MS.gene013711:CDS | 35.0% |
| ! | CAGTATTGAAAAGGTCAAAG+GGG | + | chr3.4:82040445-82040464 | None:intergenic | 35.0% |
| ! | GTTGTCATGGCTGAAATTTT+AGG | - | chr3.4:82040604-82040623 | MS.gene013711:intron | 35.0% |
| ! | TGAGCTGCTTGAATTTTTGT+GGG | - | chr3.4:82039917-82039936 | MS.gene013711:intron | 35.0% |
| ! | TTGAGCTGCTTGAATTTTTG+TGG | - | chr3.4:82039916-82039935 | MS.gene013711:intron | 35.0% |
| !! | ATCTTGGTGTCACATGTATT+AGG | - | chr3.4:82039745-82039764 | MS.gene013711:intron | 35.0% |
| !! | GGGTTTCTTTTTAATTCCAC+TGG | - | chr3.4:82038510-82038529 | MS.gene013711:intron | 35.0% |
| !! | TCTTGGTGTCACATGTATTA+GGG | - | chr3.4:82039746-82039765 | MS.gene013711:intron | 35.0% |
| !! | TTTTTGTTTGCCATGAATGC+AGG | - | chr3.4:82040645-82040664 | MS.gene013711:intron | 35.0% |
| !!! | GACTTGTATTTTGGTTGTCA+TGG | - | chr3.4:82040591-82040610 | MS.gene013711:CDS | 35.0% |
| AAACGCCAACTCTTAAGTCA+CGG | - | chr3.4:82039951-82039970 | MS.gene013711:intron | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr3.4:82039663-82039682 | None:intergenic | 40.0% | |
| AAGGAGAGTAAATCAGATGG+AGG | - | chr3.4:82038809-82038828 | MS.gene013711:intron | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr3.4:82040684-82040703 | MS.gene013711:intron | 40.0% | |
| ATTGAACGCAATCTCACCTT+AGG | + | chr3.4:82039493-82039512 | None:intergenic | 40.0% | |
| CACCATTAAGCAAAAGAGGA+AGG | - | chr3.4:82039438-82039457 | MS.gene013711:intron | 40.0% | |
| CAGGTAAATGTTAGCGAACT+TGG | - | chr3.4:82040521-82040540 | MS.gene013711:CDS | 40.0% | |
| GAAAACCTCCAAAGTATGAG+CGG | - | chr3.4:82040192-82040211 | MS.gene013711:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3.4:82038753-82038772 | MS.gene013711:CDS | 40.0% | |
| GAAAGGAAATGATCATCGGA+AGG | - | chr3.4:82039561-82039580 | MS.gene013711:intron | 40.0% | |
| GAACAGTCCCTTGGTATTAA+GGG | - | chr3.4:82038532-82038551 | MS.gene013711:intron | 40.0% | |
| GAGCGTCACCTTAAAAAGTA+TGG | - | chr3.4:82038339-82038358 | MS.gene013711:intron | 40.0% | |
| GCAACACCATTAAGCAAAAG+AGG | - | chr3.4:82039434-82039453 | MS.gene013711:intron | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr3.4:82040299-82040318 | MS.gene013711:intron | 40.0% | |
| GGCATATTTACCTGCATTCA+TGG | + | chr3.4:82040658-82040677 | None:intergenic | 40.0% | |
| GTTACCAAAGCTACGTTTGT+TGG | - | chr3.4:82040155-82040174 | MS.gene013711:intron | 40.0% | |
| GTTCCTTGTTAGCATGTTAC+GGG | - | chr3.4:82040039-82040058 | MS.gene013711:intron | 40.0% | |
| TAAGCAAAAGAGGAAGGAGA+AGG | - | chr3.4:82039444-82039463 | MS.gene013711:CDS | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr3.4:82040349-82040368 | MS.gene013711:CDS | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr3.4:82040354-82040373 | None:intergenic | 40.0% | |
| TAGTGAACCTCAATCCAGTA+GGG | + | chr3.4:82040226-82040245 | None:intergenic | 40.0% | |
| TCACGATCCAAAAGATATGC+AGG | + | chr3.4:82039294-82039313 | None:intergenic | 40.0% | |
| TGCATGATGAGTCAACATCT+AGG | - | chr3.4:82039232-82039251 | MS.gene013711:CDS | 40.0% | |
| TGTCACATGTATTAGGGTCT+TGG | - | chr3.4:82039752-82039771 | MS.gene013711:intron | 40.0% | |
| TTAGTGAACCTCAATCCAGT+AGG | + | chr3.4:82040227-82040246 | None:intergenic | 40.0% | |
| TTCCTTGTTAGCATGTTACG+GGG | - | chr3.4:82040040-82040059 | MS.gene013711:intron | 40.0% | |
| TTGCTCCCTCCTATTGTTTA+TGG | - | chr3.4:82039853-82039872 | MS.gene013711:intron | 40.0% | |
| ! | AAAAGCCTTATCCCACTAAG+TGG | + | chr3.4:82038919-82038938 | None:intergenic | 40.0% |
| ! | AAAGCCTTATCCCACTAAGT+GGG | + | chr3.4:82038918-82038937 | None:intergenic | 40.0% |
| ! | ACTTACTGGGATAAGGCTTT+TGG | - | chr3.4:82038975-82038994 | MS.gene013711:intron | 40.0% |
| ! | ACTTAGTGGGATAAGGCTTT+TGG | - | chr3.4:82038918-82038937 | MS.gene013711:intron | 40.0% |
| ! | AGCTGTTCCTGCATATCTTT+TGG | - | chr3.4:82039284-82039303 | MS.gene013711:intron | 40.0% |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr3.4:82039257-82039276 | MS.gene013711:CDS | 40.0% |
| ! | CTCCTTCCTCTTTTGCTTAA+TGG | + | chr3.4:82039443-82039462 | None:intergenic | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+GGG | - | chr3.4:82039261-82039280 | MS.gene013711:CDS | 40.0% |
| ! | GTGTGGCTTTTCATTTCCTT+AGG | - | chr3.4:82039632-82039651 | MS.gene013711:CDS | 40.0% |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr3.4:82039695-82039714 | None:intergenic | 40.0% |
| ! | TCCATCATTTTCTGGGTTGT+TGG | + | chr3.4:82040688-82040707 | None:intergenic | 40.0% |
| !! | AGATGTTGACTCATCATGCA+TGG | + | chr3.4:82039232-82039251 | None:intergenic | 40.0% |
| !! | CTCATACTTTGGAGGTTTTC+TGG | + | chr3.4:82040192-82040211 | None:intergenic | 40.0% |
| AAAAGAGGAAGGAGAAGGCT+GGG | - | chr3.4:82039449-82039468 | MS.gene013711:CDS | 45.0% | |
| AACCATCCTCTTCCATTGCT+TGG | + | chr3.4:82040138-82040157 | None:intergenic | 45.0% | |
| AGCTCACAAGCACTCTAAAC+AGG | - | chr3.4:82038410-82038429 | MS.gene013711:intron | 45.0% | |
| AGGTGTACATAGGGCCATTA+GGG | + | chr3.4:82040316-82040335 | None:intergenic | 45.0% | |
| ATGAACCGCTCATACTTTGG+AGG | + | chr3.4:82040200-82040219 | None:intergenic | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr3.4:82039474-82039493 | MS.gene013711:CDS | 45.0% | |
| ATTTCCTTAGGTACGTCCTG+TGG | - | chr3.4:82039644-82039663 | MS.gene013711:CDS | 45.0% | |
| CGAATGAACCGCTCATACTT+TGG | + | chr3.4:82040203-82040222 | None:intergenic | 45.0% | |
| CTAGCCGCAAAATGAGCATA+TGG | - | chr3.4:82038317-82038336 | MS.gene013711:intron | 45.0% | |
| CTTATCCCAGTAAGTGAGGT+CGG | + | chr3.4:82038970-82038989 | None:intergenic | 45.0% | |
| GAATGCAGGTAAATATGCCC+AGG | - | chr3.4:82040659-82040678 | MS.gene013711:intron | 45.0% | |
| GGAACAGTCCCTTGGTATTA+AGG | - | chr3.4:82038531-82038550 | MS.gene013711:intron | 45.0% | |
| TACCCCGTAACATGCTAACA+AGG | + | chr3.4:82040045-82040064 | None:intergenic | 45.0% | |
| TATCTTCGTGATCCAAACGG+CGG | + | chr3.4:82038365-82038384 | None:intergenic | 45.0% | |
| TCCATTGCTTGGCTGCAAAA+TGG | + | chr3.4:82040127-82040146 | None:intergenic | 45.0% | |
| TGAGAACACAACACGAGCAA+AGG | - | chr3.4:82039311-82039330 | MS.gene013711:intron | 45.0% | |
| TGGTGGAAAATAGGCTTAGG+TGG | - | chr3.4:82038748-82038767 | MS.gene013711:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr3.4:82038917-82038936 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCAGTAAGTG+AGG | + | chr3.4:82038974-82038993 | None:intergenic | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+AGG | + | chr3.4:82040326-82040345 | None:intergenic | 45.0% |
| ! | ACCATTTTGCAGCCAAGCAA+TGG | - | chr3.4:82040123-82040142 | MS.gene013711:intron | 45.0% |
| ! | CACCAAGAGAGGTGTACATA+GGG | + | chr3.4:82040325-82040344 | None:intergenic | 45.0% |
| ! | CGCTCCATATGCTCATTTTG+CGG | + | chr3.4:82038324-82038343 | None:intergenic | 45.0% |
| ! | GCTGCTTGAATTTTTGTGGG+TGG | - | chr3.4:82039920-82039939 | MS.gene013711:intron | 45.0% |
| ! | GGCTGATGATAATGTTCAGG+AGG | - | chr3.4:82039260-82039279 | MS.gene013711:CDS | 45.0% |
| ! | TAAAAAGTATGGCCGCCGTT+TGG | - | chr3.4:82038350-82038369 | MS.gene013711:intron | 45.0% |
| !! | AACGGCGGCCATACTTTTTA+AGG | + | chr3.4:82038350-82038369 | None:intergenic | 45.0% |
| !! | CCTCTTCATCTGCGCTTTTT+CGG | + | chr3.4:82038584-82038603 | None:intergenic | 45.0% |
| !! | CGAACTTGGTTTGGTTACAC+CGG | - | chr3.4:82040535-82040554 | MS.gene013711:CDS | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr3.4:82040334-82040353 | MS.gene013711:CDS | 45.0% |
| !! | GGAGGTTTTCTGGTAAAACC+AGG | + | chr3.4:82040182-82040201 | None:intergenic | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr3.4:82040335-82040354 | MS.gene013711:CDS | 45.0% |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr3.4:82040679-82040698 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr3.4:82040680-82040699 | None:intergenic | 45.0% |
| AGCCAAGCAATGGAAGAGGA+TGG | - | chr3.4:82040133-82040152 | MS.gene013711:intron | 50.0% | |
| AGGCCCAACAAACGTAGCTT+TGG | + | chr3.4:82040162-82040181 | None:intergenic | 50.0% | |
| ATACCAAGGGACTGTTCCAG+TGG | + | chr3.4:82038529-82038548 | None:intergenic | 50.0% | |
| ATGTAGCCGACCTCACTTAC+TGG | - | chr3.4:82038961-82038980 | MS.gene013711:intron | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr3.4:82039678-82039697 | MS.gene013711:CDS | 50.0% | |
| ATTCCACTGGAACAGTCCCT+TGG | - | chr3.4:82038523-82038542 | MS.gene013711:intron | 50.0% | |
| CAAAAGAGGAAGGAGAAGGC+TGG | - | chr3.4:82039448-82039467 | MS.gene013711:CDS | 50.0% | |
| CGACCTCACTTACTGGGATA+AGG | - | chr3.4:82038968-82038987 | MS.gene013711:intron | 50.0% | |
| CGCAATCTCACCTTAGGTAG+AGG | + | chr3.4:82039487-82039506 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGGAAAT+GGG | - | chr3.4:82039456-82039475 | MS.gene013711:CDS | 50.0% | |
| GAGGTGTACATAGGGCCATT+AGG | + | chr3.4:82040317-82040336 | None:intergenic | 50.0% | |
| GGAAATGATCATCGGAAGGC+AGG | - | chr3.4:82039565-82039584 | MS.gene013711:intron | 50.0% | |
| TCATTCGCCCTACTGGATTG+AGG | - | chr3.4:82040216-82040235 | MS.gene013711:intron | 50.0% | |
| TGAGTCAACATCTAGGCGCA+AGG | - | chr3.4:82039239-82039258 | MS.gene013711:CDS | 50.0% | |
| TGTAGCCGACCTCACTTACT+GGG | - | chr3.4:82038962-82038981 | MS.gene013711:intron | 50.0% | |
| TTGCAGCCAAGCAATGGAAG+AGG | - | chr3.4:82040129-82040148 | MS.gene013711:intron | 50.0% | |
| ! | AAAGCTACGTTTGTTGGGCC+TGG | - | chr3.4:82040161-82040180 | MS.gene013711:intron | 50.0% |
| ! | CCGAAAAAGCGCAGATGAAG+AGG | - | chr3.4:82038581-82038600 | MS.gene013711:CDS | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr3.4:82040336-82040355 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr3.4:82040333-82040352 | MS.gene013711:CDS | 50.0% |
| !! | TTGGTTTGGTTACACCGGCA+GGG | - | chr3.4:82040540-82040559 | MS.gene013711:CDS | 50.0% |
| ACCGGCAGGGAAAGTTGTGT+GGG | - | chr3.4:82040553-82040572 | MS.gene013711:CDS | 55.0% | |
| CTTATCCCACTAAGTGGGGC+CGG | + | chr3.4:82038913-82038932 | None:intergenic | 55.0% | |
| GATCATCGGAAGGCAGGAAG+TGG | - | chr3.4:82039571-82039590 | MS.gene013711:intron | 55.0% | |
| GCACTCTAAACAGGCCCAAC+AGG | - | chr3.4:82038419-82038438 | MS.gene013711:intron | 55.0% | |
| GGAAGGAGAAGGCTGGGAAA+TGG | - | chr3.4:82039455-82039474 | MS.gene013711:CDS | 55.0% | |
| GGCCCTATGTACACCTCTCT+TGG | - | chr3.4:82040320-82040339 | MS.gene013711:intron | 55.0% | |
| TCAGCCACAGGACGTACCTA+AGG | + | chr3.4:82039651-82039670 | None:intergenic | 55.0% | |
| !! | CTTGGTTTGGTTACACCGGC+AGG | - | chr3.4:82040539-82040558 | MS.gene013711:CDS | 55.0% |
| ATGTAGCCGGCCCCACTTAG+TGG | - | chr3.4:82038904-82038923 | MS.gene013711:intron | 60.0% | |
| CACCGGCAGGGAAAGTTGTG+TGG | - | chr3.4:82040552-82040571 | MS.gene013711:CDS | 60.0% | |
| CCCCACACAACTTTCCCTGC+CGG | + | chr3.4:82040557-82040576 | None:intergenic | 60.0% | |
| CCGGCAGGGAAAGTTGTGTG+GGG | - | chr3.4:82040554-82040573 | MS.gene013711:CDS | 60.0% | |
| CGGCCCCACTTAGTGGGATA+AGG | - | chr3.4:82038911-82038930 | MS.gene013711:intron | 60.0% | |
| GAGCGGTTCATTCGCCCTAC+TGG | - | chr3.4:82040209-82040228 | MS.gene013711:intron | 60.0% | |
| TGTAGCCGGCCCCACTTAGT+GGG | - | chr3.4:82038905-82038924 | MS.gene013711:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 82038200 | 82040734 | 82038200 | ID=MS.gene013711 |
| chr3.4 | mRNA | 82038200 | 82040734 | 82038200 | ID=MS.gene013711.t1;Parent=MS.gene013711 |
| chr3.4 | exon | 82040732 | 82040734 | 82040732 | ID=MS.gene013711.t1.exon1;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82040732 | 82040734 | 82040732 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82040494 | 82040613 | 82040494 | ID=MS.gene013711.t1.exon2;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82040494 | 82040613 | 82040494 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82040329 | 82040396 | 82040329 | ID=MS.gene013711.t1.exon3;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82040329 | 82040396 | 82040329 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82039602 | 82039710 | 82039602 | ID=MS.gene013711.t1.exon4;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82039602 | 82039710 | 82039602 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82039439 | 82039507 | 82039439 | ID=MS.gene013711.t1.exon5;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82039439 | 82039507 | 82039439 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82039223 | 82039280 | 82039223 | ID=MS.gene013711.t1.exon6;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82039223 | 82039280 | 82039223 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82038564 | 82038799 | 82038564 | ID=MS.gene013711.t1.exon7;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82038564 | 82038799 | 82038564 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82038359 | 82038410 | 82038359 | ID=MS.gene013711.t1.exon8;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82038359 | 82038410 | 82038359 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| chr3.4 | exon | 82038200 | 82038267 | 82038200 | ID=MS.gene013711.t1.exon9;Parent=MS.gene013711.t1 |
| chr3.4 | CDS | 82038200 | 82038267 | 82038200 | ID=cds.MS.gene013711.t1;Parent=MS.gene013711.t1 |
| Gene Sequence |
| Protein sequence |
