Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064459.t1 | XP_013468153.1 | 100 | 119 | 0 | 0 | 1 | 119 | 1 | 119 | 8.60E-64 | 252.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064459.t1 | B0BLT0 | 43.4 | 106 | 50 | 5 | 7 | 108 | 10 | 109 | 7.0e-14 | 78.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064459.t1 | I3S1F8 | 100.0 | 119 | 0 | 0 | 1 | 119 | 1 | 119 | 6.2e-64 | 252.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene064459 | 0.848731 | 5.08E-60 | -1.69E-46 |
| MS.gene050303 | MS.gene064459 | 0.837811 | 4.17E-57 | -1.69E-46 |
| MS.gene05134 | MS.gene064459 | 0.811123 | 8.19E-51 | -1.69E-46 |
| MS.gene051633 | MS.gene064459 | 0.810083 | 1.37E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene064459 | 0.806517 | 7.92E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene064459 | 0.816772 | 4.65E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene064459 | 0.836899 | 7.14E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene064459 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene064459 | 0.877573 | 5.64E-69 | -1.69E-46 |
| MS.gene057140 | MS.gene064459 | 0.822957 | 1.79E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene064459 | 0.813091 | 3.05E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene064459 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene064459 | 0.814053 | 1.87E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene064459 | 0.831084 | 2.04E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene064459 | 0.825716 | 4.03E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene064459 | 0.853668 | 2.05E-61 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064459.t1 | MTR_1g063190 | 100.000 | 119 | 0 | 0 | 1 | 119 | 1 | 119 | 2.92e-85 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064459.t1 | AT2G36930 | 77.586 | 116 | 26 | 0 | 3 | 118 | 2 | 117 | 1.11e-63 | 192 |
| MS.gene064459.t1 | AT2G36930 | 61.364 | 88 | 26 | 1 | 31 | 118 | 118 | 197 | 4.75e-23 | 89.0 |
Find 29 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAACTTTGGTCCATTATC+TGG | 0.259509 | 1.4:+51971267 | None:intergenic |
| CAATAGTGCTGTCCCATTCC+AGG | 0.370992 | 1.4:+51973955 | None:intergenic |
| CCTCTTGATGAAGATTTGCC+TGG | 0.392427 | 1.4:-51973973 | MS.gene064459:CDS |
| GGGATGGGAATGCCAGATAA+TGG | 0.398576 | 1.4:-51971279 | MS.gene064459:CDS |
| TGATGAAGATTTGCCTGGAA+TGG | 0.414705 | 1.4:-51973968 | MS.gene064459:CDS |
| CAACTTGATGCTGATTTAGC+TGG | 0.435360 | 1.4:-51971303 | MS.gene064459:CDS |
| GATGAAGATTTGCCTGGAAT+GGG | 0.472700 | 1.4:-51973967 | MS.gene064459:CDS |
| AGTTACATAGACATTAACTT+TGG | 0.499727 | 1.4:+51971255 | None:intergenic |
| CTCTTCTTCACCTTCCTGTG+TGG | 0.501586 | 1.4:+51974099 | None:intergenic |
| CTTGATCAAAGGAGATGACA+TGG | 0.505141 | 1.4:-51974040 | MS.gene064459:CDS |
| CGTTCAAAATTCTTGATCAA+AGG | 0.507305 | 1.4:-51974051 | MS.gene064459:CDS |
| AAATCTTCATCAAGAGGTAA+AGG | 0.519690 | 1.4:+51973979 | None:intergenic |
| AAAGGCTTTCTATCTTCTTG+AGG | 0.536393 | 1.4:+51973997 | None:intergenic |
| CTCGTCCCTCACGGCTACAC+TGG | 0.536997 | 1.4:+51973136 | None:intergenic |
| CTTAAAATGCTCGTCCCTCA+CGG | 0.540545 | 1.4:+51973127 | None:intergenic |
| GCTGATTTAGCTGGAGGGAT+GGG | 0.562217 | 1.4:-51971294 | MS.gene064459:CDS |
| AGGAAAATGTCCACACAGGA+AGG | 0.564358 | 1.4:-51974109 | MS.gene064459:CDS |
| CTTTGCCAGTGTAGCCGTGA+GGG | 0.568259 | 1.4:-51973141 | MS.gene064459:CDS |
| CTTGATGCTGATTTAGCTGG+AGG | 0.571593 | 1.4:-51971300 | MS.gene064459:CDS |
| TGCTGATTTAGCTGGAGGGA+TGG | 0.572336 | 1.4:-51971295 | MS.gene064459:CDS |
| TAGAGATATACTCGCAGTGA+AGG | 0.577943 | 1.4:+51973932 | None:intergenic |
| CCAGGCAAATCTTCATCAAG+AGG | 0.587128 | 1.4:+51973973 | None:intergenic |
| GTGCAGTGTGAAACAAATGA+TGG | 0.596101 | 1.4:-51971343 | MS.gene064459:intron |
| TGCAGTGTGAAACAAATGAT+GGG | 0.638754 | 1.4:-51971342 | MS.gene064459:intron |
| TCTTTGCCAGTGTAGCCGTG+AGG | 0.645497 | 1.4:-51973142 | MS.gene064459:CDS |
| TTGATGCTGATTTAGCTGGA+GGG | 0.659691 | 1.4:-51971299 | MS.gene064459:CDS |
| AGAAATCAGATCAAAATGGG+AGG | 0.672358 | 1.4:-51974129 | None:intergenic |
| TGGGAGGAAAATGTCCACAC+AGG | 0.692313 | 1.4:-51974113 | MS.gene064459:CDS |
| TCAGCATCAAGTTGAGTGTG+TGG | 0.703337 | 1.4:+51971312 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTATTATTATTCTTA+TGG | - | chr1.4:51972084-51972103 | MS.gene064459:intron | 10.0% |
| !! | AATTGAAAATTGATTATCTT+TGG | - | chr1.4:51971588-51971607 | MS.gene064459:intron | 15.0% |
| !! | ATATTCACTAATATAAAAAC+AGG | + | chr1.4:51972348-51972367 | None:intergenic | 15.0% |
| !! | TATTCACTAATATAAAAACA+GGG | + | chr1.4:51972347-51972366 | None:intergenic | 15.0% |
| !! | TGATTATGTAAAATTGATTA+TGG | - | chr1.4:51971551-51971570 | MS.gene064459:intron | 15.0% |
| !! | TTTAGAGAATTCTAAATTAT+GGG | - | chr1.4:51973380-51973399 | MS.gene064459:intron | 15.0% |
| !!! | AAATAATTTAGTTTTTTGTG+GGG | - | chr1.4:51973247-51973266 | MS.gene064459:intron | 15.0% |
| !!! | AATTGACTTATTTAAACTTT+TGG | + | chr1.4:51972561-51972580 | None:intergenic | 15.0% |
| !!! | ATTGACTTATTTAAACTTTT+GGG | + | chr1.4:51972560-51972579 | None:intergenic | 15.0% |
| !!! | GAAATAATTTAGTTTTTTGT+GGG | - | chr1.4:51973246-51973265 | MS.gene064459:intron | 15.0% |
| !!! | TGAAATAATTTAGTTTTTTG+TGG | - | chr1.4:51973245-51973264 | MS.gene064459:intron | 15.0% |
| !!! | TGAAATTTTTAGAATTATTC+TGG | - | chr1.4:51972825-51972844 | MS.gene064459:intron | 15.0% |
| !!! | TGATAATAATTGATTTTGAA+TGG | - | chr1.4:51971526-51971545 | MS.gene064459:intron | 15.0% |
| !!! | TTTTAGAGAATTCTAAATTA+TGG | - | chr1.4:51973379-51973398 | MS.gene064459:intron | 15.0% |
| !! | AAATAAACAGTAATATCAGA+AGG | + | chr1.4:51974008-51974027 | None:intergenic | 20.0% |
| !! | AACTATTAGAAAAGATTTAG+AGG | - | chr1.4:51973063-51973082 | MS.gene064459:intron | 20.0% |
| !! | ACTTTAAGTCAAAATCAATT+CGG | - | chr1.4:51971657-51971676 | MS.gene064459:intron | 20.0% |
| !! | AGAATTGATTAGAACATTTA+TGG | + | chr1.4:51971962-51971981 | None:intergenic | 20.0% |
| !! | TATATATTACTTAGCAAATG+CGG | + | chr1.4:51973357-51973376 | None:intergenic | 20.0% |
| !! | TTAGAGAATTCTAAATTATG+GGG | - | chr1.4:51973381-51973400 | MS.gene064459:intron | 20.0% |
| !!! | ATTTTAAGACAAAAAAACAC+AGG | - | chr1.4:51972259-51972278 | MS.gene064459:intron | 20.0% |
| !!! | ATTTTGAGTTGAAATGATTT+GGG | - | chr1.4:51971822-51971841 | MS.gene064459:intron | 20.0% |
| !!! | GCTGAAATTGAATTATTTTT+CGG | - | chr1.4:51973750-51973769 | MS.gene064459:intron | 20.0% |
| ! | AACATAAAACTACATACAGT+GGG | + | chr1.4:51973518-51973537 | None:intergenic | 25.0% |
| ! | AACATAGACAAGGTATATAT+AGG | + | chr1.4:51972690-51972709 | None:intergenic | 25.0% |
| ! | AACATATCTTTCTTTCAGAT+AGG | - | chr1.4:51972439-51972458 | MS.gene064459:intron | 25.0% |
| ! | ACATATCTTTCTTTCAGATA+GGG | - | chr1.4:51972440-51972459 | MS.gene064459:intron | 25.0% |
| ! | ATAAGTCAATTAACCATAAC+TGG | - | chr1.4:51972570-51972589 | MS.gene064459:intron | 25.0% |
| ! | ATTCTTATGGTTAAGACTTA+AGG | - | chr1.4:51972097-51972116 | MS.gene064459:intron | 25.0% |
| ! | GTTCTATCATAATCCATATT+TGG | + | chr1.4:51973103-51973122 | None:intergenic | 25.0% |
| ! | TAAGTGCATTATGATGTAAT+AGG | - | chr1.4:51973838-51973857 | MS.gene064459:intron | 25.0% |
| ! | TAATGAGTTTGATCCAAATA+TGG | - | chr1.4:51973087-51973106 | MS.gene064459:intron | 25.0% |
| ! | TGATTATCTTTGGATTCATT+GGG | - | chr1.4:51971598-51971617 | MS.gene064459:intron | 25.0% |
| ! | TTACATACAAAGTGTATGTT+TGG | + | chr1.4:51972025-51972044 | None:intergenic | 25.0% |
| ! | TTGATTATCTTTGGATTCAT+TGG | - | chr1.4:51971597-51971616 | MS.gene064459:intron | 25.0% |
| !! | AGAGTATAGCTTTTCATTAA+AGG | - | chr1.4:51973934-51973953 | MS.gene064459:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr1.4:51973046-51973065 | None:intergenic | 25.0% |
| !! | GTTTTATGTTGTTCAGTAAT+TGG | - | chr1.4:51973528-51973547 | MS.gene064459:intron | 25.0% |
| !! | TGGATTATGATAGAACATTT+TGG | - | chr1.4:51973107-51973126 | MS.gene064459:CDS | 25.0% |
| !! | TGGATTTATACATGTTTTCA+AGG | - | chr1.4:51973548-51973567 | MS.gene064459:intron | 25.0% |
| !! | TGTTTTTCGTTCTTATGTTT+TGG | - | chr1.4:51972157-51972176 | MS.gene064459:intron | 25.0% |
| !! | TTTGCGCATATATATTGTTT+TGG | - | chr1.4:51973630-51973649 | MS.gene064459:intron | 25.0% |
| !!! | ACACCTCTAAAATCAATTTT+TGG | - | chr1.4:51971982-51972001 | MS.gene064459:intron | 25.0% |
| !!! | GATTTTGAGTTGAAATGATT+TGG | - | chr1.4:51971821-51971840 | MS.gene064459:intron | 25.0% |
| AAACATAGAGTTTGCAAGAA+TGG | + | chr1.4:51973668-51973687 | None:intergenic | 30.0% | |
| AAATCTTCATCAAGAGGTAA+AGG | + | chr1.4:51971395-51971414 | None:intergenic | 30.0% | |
| AATTGATACTACTTGAAGCT+AGG | + | chr1.4:51971922-51971941 | None:intergenic | 30.0% | |
| ACAAAATTCAGCTTGATTGA+AGG | + | chr1.4:51972517-51972536 | None:intergenic | 30.0% | |
| ACGAAAAACAAAAAACGAGT+TGG | + | chr1.4:51972147-51972166 | None:intergenic | 30.0% | |
| AGAAGAAAACACTTCAAAAC+AGG | + | chr1.4:51972391-51972410 | None:intergenic | 30.0% | |
| AGCATTCAAAATTGTGTGTT+AGG | - | chr1.4:51973432-51973451 | MS.gene064459:intron | 30.0% | |
| ATGAGGTGGTTAAAATTGAT+TGG | + | chr1.4:51973800-51973819 | None:intergenic | 30.0% | |
| ATTAACTTTGGTCCATTATC+TGG | + | chr1.4:51974107-51974126 | None:intergenic | 30.0% | |
| CAACATAAAACTACATACAG+TGG | + | chr1.4:51973519-51973538 | None:intergenic | 30.0% | |
| CAAGTGAAGATACTAGAAAT+TGG | + | chr1.4:51973586-51973605 | None:intergenic | 30.0% | |
| CGAAAAACAAAAAACGAGTT+GGG | + | chr1.4:51972146-51972165 | None:intergenic | 30.0% | |
| CGTTCAAAATTCTTGATCAA+AGG | - | chr1.4:51971320-51971339 | MS.gene064459:CDS | 30.0% | |
| CTTCACTTGAAATCTTAACT+TGG | - | chr1.4:51973597-51973616 | MS.gene064459:intron | 30.0% | |
| GAATGTTCGATAAGATTGAA+AGG | + | chr1.4:51972323-51972342 | None:intergenic | 30.0% | |
| GTGAATATGCTTTATAGTTG+AGG | - | chr1.4:51972360-51972379 | MS.gene064459:intron | 30.0% | |
| GTTTGCAAAATTTGTGTGTT+TGG | - | chr1.4:51971495-51971514 | MS.gene064459:intron | 30.0% | |
| TACCAAGTAATTAACATGCA+TGG | + | chr1.4:51973487-51973506 | None:intergenic | 30.0% | |
| ! | CAATTTTGCCTCTTAAAATG+TGG | - | chr1.4:51972046-51972065 | MS.gene064459:intron | 30.0% |
| ! | CTGAATTTTGTCCTTAATCT+AGG | - | chr1.4:51972526-51972545 | MS.gene064459:intron | 30.0% |
| ! | GGACAAGCATATTTTACAAA+GGG | + | chr1.4:51972735-51972754 | None:intergenic | 30.0% |
| ! | GTAGTATGAAGAGTATATGT+CGG | - | chr1.4:51972999-51973018 | MS.gene064459:intron | 30.0% |
| !! | ATTATTCTGGAATGTTGTGT+TGG | - | chr1.4:51972838-51972857 | MS.gene064459:intron | 30.0% |
| !! | ATTTAGTTTGCACTATGATG+AGG | + | chr1.4:51973817-51973836 | None:intergenic | 30.0% |
| !!! | AATTTGTGTGTTTGGTTTTG+CGG | - | chr1.4:51971503-51971522 | MS.gene064459:intron | 30.0% |
| !!! | TTTCGTTCTTATGTTTTGGT+TGG | - | chr1.4:51972161-51972180 | MS.gene064459:intron | 30.0% |
| AAAGGCTTTCTATCTTCTTG+AGG | + | chr1.4:51971377-51971396 | None:intergenic | 35.0% | |
| AACCAAGCATACACATACAT+AGG | + | chr1.4:51971784-51971803 | None:intergenic | 35.0% | |
| AACCTATGTATGTGTATGCT+TGG | - | chr1.4:51971779-51971798 | MS.gene064459:intron | 35.0% | |
| AACTAACGATTTAGTGTAGG+AGG | - | chr1.4:51971685-51971704 | MS.gene064459:intron | 35.0% | |
| ACTTCCATCCAATTTCTTAC+AGG | + | chr1.4:51972601-51972620 | None:intergenic | 35.0% | |
| AGACAAAAAAACACAGGAGA+CGG | - | chr1.4:51972265-51972284 | MS.gene064459:intron | 35.0% | |
| AGACAAGGTATATATAGGAC+TGG | + | chr1.4:51972685-51972704 | None:intergenic | 35.0% | |
| CATACATAGGTTCCATATCA+TGG | + | chr1.4:51971771-51971790 | None:intergenic | 35.0% | |
| CGAAACTAACGATTTAGTGT+AGG | - | chr1.4:51971682-51971701 | MS.gene064459:intron | 35.0% | |
| CTCCATGCATGTTAATTACT+TGG | - | chr1.4:51973482-51973501 | MS.gene064459:intron | 35.0% | |
| CTTAAAGGCAAACATAGACA+AGG | + | chr1.4:51972700-51972719 | None:intergenic | 35.0% | |
| CTTCATACTACAGAATCTAC+AGG | + | chr1.4:51972990-51973009 | None:intergenic | 35.0% | |
| CTTCCATCCAATTTCTTACA+GGG | + | chr1.4:51972600-51972619 | None:intergenic | 35.0% | |
| GGTAAATGAAGTTATGCTTG+TGG | - | chr1.4:51972621-51972640 | MS.gene064459:intron | 35.0% | |
| GTATGAACTCATAAAGCAGA+TGG | - | chr1.4:51972411-51972430 | MS.gene064459:intron | 35.0% | |
| TGCAGTGTGAAACAAATGAT+GGG | - | chr1.4:51974029-51974048 | MS.gene064459:CDS | 35.0% | |
| TGTAAGAAATTGGATGGAAG+TGG | - | chr1.4:51972600-51972619 | MS.gene064459:intron | 35.0% | |
| ! | ATGTTTGGTTCCATTTGTAG+AGG | + | chr1.4:51972010-51972029 | None:intergenic | 35.0% |
| ! | CAAGAATTTTGAACGACGAT+CGG | + | chr1.4:51971315-51971334 | None:intergenic | 35.0% |
| ! | GGGACAAGCATATTTTACAA+AGG | + | chr1.4:51972736-51972755 | None:intergenic | 35.0% |
| ! | GTTTCGTTCCACATTTTAAG+AGG | + | chr1.4:51972057-51972076 | None:intergenic | 35.0% |
| ! | TCTATCAAGTGTTGTTCGTT+TGG | - | chr1.4:51972192-51972211 | MS.gene064459:intron | 35.0% |
| ! | TGGTCATTGTTGTTGTATTC+TGG | - | chr1.4:51973175-51973194 | MS.gene064459:intron | 35.0% |
| ! | TGTTTGGTTCCATTTGTAGA+GGG | + | chr1.4:51972009-51972028 | None:intergenic | 35.0% |
| ! | TTCTTTCGAAGCTGCATTTT+GGG | + | chr1.4:51973412-51973431 | None:intergenic | 35.0% |
| ! | TTTCTTTCGAAGCTGCATTT+TGG | + | chr1.4:51973413-51973432 | None:intergenic | 35.0% |
| !! | GAGTATTGAAACTGAAGCAA+AGG | + | chr1.4:51972298-51972317 | None:intergenic | 35.0% |
| !! | GGGCCAAAAATTGATTTTAG+AGG | + | chr1.4:51971988-51972007 | None:intergenic | 35.0% |
| ACATAGGTTCCATATCATGG+TGG | + | chr1.4:51971768-51971787 | None:intergenic | 40.0% | |
| ACGGTGGATCATTGTGATTA+TGG | - | chr1.4:51971737-51971756 | MS.gene064459:intron | 40.0% | |
| ACTAAGTGAGATCAGCTACA+TGG | + | chr1.4:51973144-51973163 | None:intergenic | 40.0% | |
| AGACCCTGTAAGAAATTGGA+TGG | - | chr1.4:51972594-51972613 | MS.gene064459:intron | 40.0% | |
| AGGAGGTTTAGTATCATGGT+GGG | - | chr1.4:51971702-51971721 | MS.gene064459:intron | 40.0% | |
| AGGTGGTAGGAAATAAGCTT+AGG | - | chr1.4:51972940-51972959 | MS.gene064459:intron | 40.0% | |
| ATGCAGTGAACTAGAAGCAA+TGG | + | chr1.4:51973725-51973744 | None:intergenic | 40.0% | |
| ATGTAGCTGATCTCACTTAG+TGG | - | chr1.4:51973143-51973162 | MS.gene064459:CDS | 40.0% | |
| CTGCAATATAAGCTGGGAAT+GGG | + | chr1.4:51972756-51972775 | None:intergenic | 40.0% | |
| CTTGATCAAAGGAGATGACA+TGG | - | chr1.4:51971331-51971350 | MS.gene064459:CDS | 40.0% | |
| GAAATAAGCTTAGGCGGTTT+GGG | - | chr1.4:51972949-51972968 | MS.gene064459:intron | 40.0% | |
| GATGAAGATTTGCCTGGAAT+GGG | - | chr1.4:51971404-51971423 | MS.gene064459:intron | 40.0% | |
| GCAAGTCTGCAATATAAGCT+GGG | + | chr1.4:51972762-51972781 | None:intergenic | 40.0% | |
| GGGAAAATGAGCCTAGATTA+AGG | + | chr1.4:51972540-51972559 | None:intergenic | 40.0% | |
| GGGAGTAAAAACTCGCTTAA+AGG | + | chr1.4:51972715-51972734 | None:intergenic | 40.0% | |
| GTGCAGTGTGAAACAAATGA+TGG | - | chr1.4:51974028-51974047 | MS.gene064459:CDS | 40.0% | |
| GTGTAGGAGGTTTAGTATCA+TGG | - | chr1.4:51971698-51971717 | MS.gene064459:intron | 40.0% | |
| TACTCCAACTCTCTCTCTAA+CGG | + | chr1.4:51972904-51972923 | None:intergenic | 40.0% | |
| TAGAGATATACTCGCAGTGA+AGG | + | chr1.4:51971442-51971461 | None:intergenic | 40.0% | |
| TAGGAGGTTTAGTATCATGG+TGG | - | chr1.4:51971701-51971720 | MS.gene064459:intron | 40.0% | |
| TCTGCAATATAAGCTGGGAA+TGG | + | chr1.4:51972757-51972776 | None:intergenic | 40.0% | |
| TGATCTCACTTAGTGGGATA+AGG | - | chr1.4:51973150-51973169 | MS.gene064459:CDS | 40.0% | |
| TGATGAAGATTTGCCTGGAA+TGG | - | chr1.4:51971403-51971422 | MS.gene064459:intron | 40.0% | |
| TGCAAGTCTGCAATATAAGC+TGG | + | chr1.4:51972763-51972782 | None:intergenic | 40.0% | |
| TGCAGTGAACTAGAAGCAAT+GGG | + | chr1.4:51973724-51973743 | None:intergenic | 40.0% | |
| TGGAAGACCCTGTAAGAAAT+TGG | - | chr1.4:51972590-51972609 | MS.gene064459:intron | 40.0% | |
| TGGTAGGAAATAAGCTTAGG+CGG | - | chr1.4:51972943-51972962 | MS.gene064459:intron | 40.0% | |
| TGTAGCTGATCTCACTTAGT+GGG | - | chr1.4:51973144-51973163 | MS.gene064459:CDS | 40.0% | |
| ! | GTTTGGTTCCATTTGTAGAG+GGG | + | chr1.4:51972008-51972027 | None:intergenic | 40.0% |
| ! | TAGTTTGCACTATGATGAGG+TGG | + | chr1.4:51973814-51973833 | None:intergenic | 40.0% |
| !! | AGTATATGTCGGCTCAAAAG+AGG | - | chr1.4:51973010-51973029 | MS.gene064459:intron | 40.0% |
| !! | CAACTTGATGCTGATTTAGC+TGG | - | chr1.4:51974068-51974087 | MS.gene064459:CDS | 40.0% |
| !! | TTGATGCTGATTTAGCTGGA+GGG | - | chr1.4:51974072-51974091 | MS.gene064459:CDS | 40.0% |
| !!! | AGTTTTTTGTGGGGCAATGT+GGG | - | chr1.4:51973256-51973275 | MS.gene064459:intron | 40.0% |
| !!! | ATTTTTGGCCCCTCTACAAA+TGG | - | chr1.4:51971997-51972016 | MS.gene064459:intron | 40.0% |
| !!! | TAGTTTTTTGTGGGGCAATG+TGG | - | chr1.4:51973255-51973274 | MS.gene064459:intron | 40.0% |
| AGACTAGACGGGATAGGATT+AGG | - | chr1.4:51972871-51972890 | MS.gene064459:intron | 45.0% | |
| AGGAAAATGTCCACACAGGA+AGG | - | chr1.4:51971262-51971281 | MS.gene064459:CDS | 45.0% | |
| AGTAGCACCTGTGGTAGAAA+AGG | - | chr1.4:51972920-51972939 | MS.gene064459:intron | 45.0% | |
| ATGGCGTATCCACCATGATA+TGG | - | chr1.4:51971756-51971775 | MS.gene064459:intron | 45.0% | |
| CCAGGCAAATCTTCATCAAG+AGG | + | chr1.4:51971401-51971420 | None:intergenic | 45.0% | |
| CCTCTTGATGAAGATTTGCC+TGG | - | chr1.4:51971398-51971417 | MS.gene064459:intron | 45.0% | |
| CTTAAAATGCTCGTCCCTCA+CGG | + | chr1.4:51972247-51972266 | None:intergenic | 45.0% | |
| CTTACAGGGTCTTCCAGTTA+TGG | + | chr1.4:51972586-51972605 | None:intergenic | 45.0% | |
| GATGAGTGGTAAGACTAGAC+GGG | - | chr1.4:51972860-51972879 | MS.gene064459:intron | 45.0% | |
| GGAAATAAGCTTAGGCGGTT+TGG | - | chr1.4:51972948-51972967 | MS.gene064459:intron | 45.0% | |
| GGAATGTTGTGTTGGATGAG+TGG | - | chr1.4:51972846-51972865 | MS.gene064459:intron | 45.0% | |
| GGATGAGTGGTAAGACTAGA+CGG | - | chr1.4:51972859-51972878 | MS.gene064459:intron | 45.0% | |
| TCACTTAGTGGGATAAGGCT+TGG | - | chr1.4:51973155-51973174 | MS.gene064459:intron | 45.0% | |
| ! | TGGTGGGTATGTCAACATCA+CGG | - | chr1.4:51971718-51971737 | MS.gene064459:intron | 45.0% |
| !! | CTTGATGCTGATTTAGCTGG+AGG | - | chr1.4:51974071-51974090 | MS.gene064459:CDS | 45.0% |
| !! | TCAGCATCAAGTTGAGTGTG+TGG | + | chr1.4:51974062-51974081 | None:intergenic | 45.0% |
| !!! | GTTTTTTGTGGGGCAATGTG+GGG | - | chr1.4:51973257-51973276 | MS.gene064459:intron | 45.0% |
| AGCACCTGTGGTAGAAAAGG+TGG | - | chr1.4:51972923-51972942 | MS.gene064459:intron | 50.0% | |
| CAATAGTGCTGTCCCATTCC+AGG | + | chr1.4:51971419-51971438 | None:intergenic | 50.0% | |
| CCTGTGGTAGAAAAGGTGGT+AGG | - | chr1.4:51972927-51972946 | MS.gene064459:intron | 50.0% | |
| CTCTTCTTCACCTTCCTGTG+TGG | + | chr1.4:51971275-51971294 | None:intergenic | 50.0% | |
| GACACCGTTAGAGAGAGAGT+TGG | - | chr1.4:51972897-51972916 | MS.gene064459:intron | 50.0% | |
| GGGATGGGAATGCCAGATAA+TGG | - | chr1.4:51974092-51974111 | MS.gene064459:CDS | 50.0% | |
| GTGGTAAGACTAGACGGGAT+AGG | - | chr1.4:51972865-51972884 | MS.gene064459:intron | 50.0% | |
| TGGGAGGAAAATGTCCACAC+AGG | - | chr1.4:51971258-51971277 | MS.gene064459:CDS | 50.0% | |
| TGGGTATGTCAACATCACGG+TGG | - | chr1.4:51971721-51971740 | MS.gene064459:intron | 50.0% | |
| ! | CCTACCACCTTTTCTACCAC+AGG | + | chr1.4:51972930-51972949 | None:intergenic | 50.0% |
| ! | GCTGATTTAGCTGGAGGGAT+GGG | - | chr1.4:51974077-51974096 | MS.gene064459:CDS | 50.0% |
| !! | TGCTGATTTAGCTGGAGGGA+TGG | - | chr1.4:51974076-51974095 | MS.gene064459:CDS | 50.0% |
| !! | TGTCGGCTCAAAAGAGGTAG+CGG | - | chr1.4:51973016-51973035 | MS.gene064459:intron | 50.0% |
| CTTTGCCAGTGTAGCCGTGA+GGG | - | chr1.4:51972230-51972249 | MS.gene064459:intron | 55.0% | |
| GAGAGTTGGAGTAGCACCTG+TGG | - | chr1.4:51972911-51972930 | MS.gene064459:intron | 55.0% | |
| GCAATGTGGGGCAAGGTTGA+TGG | - | chr1.4:51973269-51973288 | MS.gene064459:intron | 55.0% | |
| TCTTTGCCAGTGTAGCCGTG+AGG | - | chr1.4:51972229-51972248 | MS.gene064459:intron | 55.0% | |
| TTGTGGGGCAATGTGGGGCA+AGG | - | chr1.4:51973262-51973281 | MS.gene064459:intron | 60.0% | |
| CTCGTCCCTCACGGCTACAC+TGG | + | chr1.4:51972238-51972257 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 51971257 | 51974136 | 51971257 | ID=MS.gene064459 |
| chr1.4 | mRNA | 51971257 | 51974136 | 51971257 | ID=MS.gene064459.t1;Parent=MS.gene064459 |
| chr1.4 | exon | 51973943 | 51974136 | 51973943 | ID=MS.gene064459.t1.exon1;Parent=MS.gene064459.t1 |
| chr1.4 | CDS | 51973943 | 51974136 | 51973943 | ID=cds.MS.gene064459.t1;Parent=MS.gene064459.t1 |
| chr1.4 | exon | 51973107 | 51973169 | 51973107 | ID=MS.gene064459.t1.exon2;Parent=MS.gene064459.t1 |
| chr1.4 | CDS | 51973107 | 51973169 | 51973107 | ID=cds.MS.gene064459.t1;Parent=MS.gene064459.t1 |
| chr1.4 | exon | 51971257 | 51971359 | 51971257 | ID=MS.gene064459.t1.exon3;Parent=MS.gene064459.t1 |
| chr1.4 | CDS | 51971257 | 51971359 | 51971257 | ID=cds.MS.gene064459.t1;Parent=MS.gene064459.t1 |
| Gene Sequence |
| Protein sequence |
