Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051451.t1 | XP_013468153.1 | 99.2 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.50E-63 | 251.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051451.t1 | B0BLT0 | 43.4 | 106 | 50 | 5 | 7 | 108 | 10 | 109 | 7.0e-14 | 78.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051451.t1 | I3S1F8 | 99.2 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 1.8e-63 | 251.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene051451 | 0.80884 | 2.54E-50 | -1.69E-46 |
| MS.gene049756 | MS.gene051451 | 0.818478 | 1.92E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene051451 | 0.8431 | 1.72E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene051451 | 0.810158 | 1.32E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene051451 | 0.816967 | 4.21E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene051633 | 0.815403 | 9.41E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene051903 | 0.832893 | 7.29E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene052302 | 0.805372 | 1.38E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene052376 | 0.806917 | 6.52E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene053109 | 0.814935 | 1.20E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene053952 | 0.820454 | 6.80E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene056403 | 0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene056631 | 0.842981 | 1.85E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene057094 | 0.818443 | 1.96E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene057234 | 0.836986 | 6.78E-57 | -1.69E-46 |
| MS.gene051451 | MS.gene057705 | 0.800319 | 1.52E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene058238 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene058906 | 0.809183 | 2.15E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene06001 | 0.843771 | 1.14E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene060763 | 0.805379 | 1.37E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene060830 | 0.819412 | 1.18E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene06172 | 0.800089 | 1.70E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene064071 | 0.831108 | 2.01E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene064072 | 0.829636 | 4.61E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene064937 | 0.819504 | 1.12E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene066035 | 0.831867 | 1.31E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene06667 | 0.819666 | 1.03E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene06837 | 0.816197 | 6.26E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene068549 | 0.828136 | 1.06E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene068695 | 0.80066 | 1.30E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene06883 | 0.806691 | 7.27E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene069065 | 0.822059 | 2.90E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene069310 | 0.836507 | 8.98E-57 | -1.69E-46 |
| MS.gene051451 | MS.gene06982 | 0.824167 | 9.35E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene06984 | 0.817131 | 3.87E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene06989 | 0.828795 | 7.37E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene069962 | 0.808988 | 2.36E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene070222 | 0.83964 | 1.40E-57 | -1.69E-46 |
| MS.gene051451 | MS.gene07100 | 0.823256 | 1.53E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene07101 | 0.804526 | 2.07E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene071987 | 0.81442 | 1.55E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene072057 | 0.839348 | 1.67E-57 | -1.69E-46 |
| MS.gene051451 | MS.gene07217 | 0.832838 | 7.52E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene07222 | 0.863609 | 2.20E-64 | -1.69E-46 |
| MS.gene051451 | MS.gene072782 | 0.859215 | 4.83E-63 | -1.69E-46 |
| MS.gene051451 | MS.gene073332 | 0.854242 | 1.40E-61 | -1.69E-46 |
| MS.gene051451 | MS.gene073637 | 0.800197 | 1.61E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene073833 | 0.812256 | 4.65E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene073954 | 0.800876 | 1.17E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene074000 | 0.81626 | 6.06E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene074369 | 0.837666 | 4.54E-57 | -1.69E-46 |
| MS.gene051451 | MS.gene09032 | 0.811886 | 5.59E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene20740 | 0.862176 | 6.10E-64 | -1.69E-46 |
| MS.gene051451 | MS.gene21928 | 0.800197 | 1.61E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene22314 | 0.800349 | 1.50E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene22968 | 0.831119 | 2.00E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene23058 | 0.805414 | 1.35E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene23059 | 0.852873 | 3.47E-61 | -1.69E-46 |
| MS.gene051451 | MS.gene23491 | 0.804091 | 2.55E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene24539 | 0.810637 | 1.04E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene24692 | 0.832537 | 8.94E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene24930 | 0.823522 | 1.32E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene25475 | 0.804437 | 2.16E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene25942 | 0.830398 | 3.00E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene26811 | 0.80263 | 5.12E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene27687 | 0.801244 | 9.87E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene27865 | -0.800565 | 1.36E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene28864 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene28944 | 0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene29719 | 0.807342 | 5.30E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene31196 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene33160 | 0.800248 | 1.58E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene33183 | 0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene33384 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene33907 | 0.826889 | 2.12E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene35214 | 0.806585 | 7.66E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene36468 | 0.815856 | 7.46E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene37637 | 0.800857 | 1.18E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene40648 | 0.840242 | 9.78E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene41171 | 0.805602 | 1.23E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene41455 | 0.819815 | 9.52E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene42247 | 0.834114 | 3.61E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene43491 | 0.816388 | 5.67E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene43602 | 0.822854 | 1.90E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene43992 | 0.819628 | 1.05E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene44260 | 0.815597 | 8.52E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene51111 | 0.843331 | 1.50E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene51658 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene54282 | 0.816819 | 4.54E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene55732 | 0.844042 | 9.66E-59 | -1.69E-46 |
| MS.gene051451 | MS.gene57210 | 0.85226 | 5.19E-61 | -1.69E-46 |
| MS.gene051451 | MS.gene60717 | 0.818955 | 1.50E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene61543 | 0.805057 | 1.60E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene62558 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene62834 | 0.834821 | 2.40E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene63893 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene64243 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene65412 | 0.816517 | 5.31E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene66089 | 0.856179 | 3.83E-62 | -1.69E-46 |
| MS.gene051451 | MS.gene68810 | 0.829632 | 4.62E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene69649 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene69947 | 0.810903 | 9.14E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene70613 | 0.835506 | 1.61E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene71825 | 0.816312 | 5.90E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene71826 | 0.815154 | 1.07E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene71949 | 0.831558 | 1.56E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene72130 | 0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene72285 | 0.822071 | 2.88E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene72894 | 0.852088 | 5.81E-61 | -1.69E-46 |
| MS.gene051451 | MS.gene74503 | 0.801433 | 9.03E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene75187 | 0.81504 | 1.13E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene75477 | 0.802637 | 5.11E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene76478 | 0.815281 | 1.00E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene76576 | 0.800426 | 1.45E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene78682 | 0.810805 | 9.60E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene79605 | 0.822393 | 2.43E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene82767 | 0.828777 | 7.44E-55 | -1.69E-46 |
| MS.gene051451 | MS.gene82880 | 0.817005 | 4.13E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene83091 | 0.802419 | 5.66E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene83217 | 0.833252 | 5.93E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene84040 | 0.81856 | 1.84E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene84455 | 0.833056 | 6.64E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene86265 | 0.826903 | 2.10E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene86350 | 0.802676 | 5.01E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene86392 | 0.800452 | 1.43E-48 | -1.69E-46 |
| MS.gene051451 | MS.gene87285 | 0.817889 | 2.61E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene88427 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene89562 | 0.821676 | 3.56E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene89721 | 0.84132 | 5.10E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene91524 | 0.806214 | 9.17E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene91622 | 0.824729 | 6.89E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene92557 | 0.818237 | 2.18E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene92572 | 0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene92818 | 0.823206 | 1.57E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene92819 | 0.840566 | 8.05E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene93202 | 0.805596 | 1.24E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene93973 | 0.826045 | 3.36E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene94183 | 0.828244 | 1.00E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene95039 | 0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene95469 | 0.820324 | 7.29E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene95486 | 0.809055 | 2.29E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene96322 | 0.840981 | 6.26E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene97738 | 0.807136 | 5.86E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene98436 | 0.802986 | 4.32E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene98889 | 0.840735 | 7.27E-58 | -1.69E-46 |
| MS.gene051451 | MS.gene99313 | 0.833105 | 6.45E-56 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051451.t1 | MTR_1g063190 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 1.47e-84 | 242 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051451.t1 | AT2G36930 | 76.724 | 116 | 27 | 0 | 3 | 118 | 2 | 117 | 4.22e-63 | 191 |
| MS.gene051451.t1 | AT2G36930 | 60.227 | 88 | 27 | 1 | 31 | 118 | 118 | 197 | 5.17e-23 | 89.0 |
Find 29 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAACTTTGGTCCATTATC+TGG | 0.259509 | 1.1:+47899725 | None:intergenic |
| CAATAGTGTTGTCCCATTCC+AGG | 0.382658 | 1.1:+47902434 | None:intergenic |
| CCTCTTGATGAAGATTTGCC+TGG | 0.392427 | 1.1:-47902452 | MS.gene051451:CDS |
| GGGATGGGAATGCCAGATAA+TGG | 0.398576 | 1.1:-47899737 | MS.gene051451:CDS |
| TGATGAAGATTTGCCTGGAA+TGG | 0.414705 | 1.1:-47902447 | MS.gene051451:CDS |
| CAACTTGATGCTGATTTAGC+TGG | 0.435360 | 1.1:-47899761 | MS.gene051451:CDS |
| GATGAAGATTTGCCTGGAAT+GGG | 0.472700 | 1.1:-47902446 | MS.gene051451:CDS |
| AGTTACATAGACATTAACTT+TGG | 0.499727 | 1.1:+47899713 | None:intergenic |
| CTCTTCTTCACCTTCCTGTG+TGG | 0.501586 | 1.1:+47902578 | None:intergenic |
| CTTGATCAAAGGAGATGACA+TGG | 0.505141 | 1.1:-47902519 | MS.gene051451:CDS |
| CGTTCAAAATTCTTGATCAA+AGG | 0.507305 | 1.1:-47902530 | MS.gene051451:CDS |
| AAATCTTCATCAAGAGGTAA+AGG | 0.519690 | 1.1:+47902458 | None:intergenic |
| AAAGGCTTTCTATCTTCTTG+AGG | 0.536393 | 1.1:+47902476 | None:intergenic |
| CTCGTCCCTCACGGCTACAC+TGG | 0.536997 | 1.1:+47901615 | None:intergenic |
| CTTAAAATGCTCGTCCCTCA+CGG | 0.540545 | 1.1:+47901606 | None:intergenic |
| GCTGATTTAGCTGGAGGGAT+GGG | 0.562217 | 1.1:-47899752 | MS.gene051451:CDS |
| AGGAAAATGTCCACACAGGA+AGG | 0.564358 | 1.1:-47902588 | MS.gene051451:CDS |
| CTTTGCCAGTGTAGCCGTGA+GGG | 0.568259 | 1.1:-47901620 | MS.gene051451:CDS |
| CTTGATGCTGATTTAGCTGG+AGG | 0.571593 | 1.1:-47899758 | MS.gene051451:CDS |
| TGCTGATTTAGCTGGAGGGA+TGG | 0.572336 | 1.1:-47899753 | MS.gene051451:CDS |
| TAGAGATATACTCGCAGTGA+AGG | 0.577943 | 1.1:+47902411 | None:intergenic |
| GTGCAGTATGAAACAAATGA+TGG | 0.580351 | 1.1:-47899801 | MS.gene051451:intron |
| CCAGGCAAATCTTCATCAAG+AGG | 0.587128 | 1.1:+47902452 | None:intergenic |
| TCTTTGCCAGTGTAGCCGTG+AGG | 0.645497 | 1.1:-47901621 | MS.gene051451:CDS |
| TGCAGTATGAAACAAATGAT+GGG | 0.647757 | 1.1:-47899800 | MS.gene051451:intron |
| TTGATGCTGATTTAGCTGGA+GGG | 0.659691 | 1.1:-47899757 | MS.gene051451:CDS |
| AGAAATCAGATCAAAATGGG+AGG | 0.672358 | 1.1:-47902608 | None:intergenic |
| TGGGAGGAAAATGTCCACAC+AGG | 0.692313 | 1.1:-47902592 | MS.gene051451:CDS |
| TCAGCATCAAGTTGAGTGTG+TGG | 0.703337 | 1.1:+47899770 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAATTGATTATGTT+TGG | - | chr1.1:47900046-47900065 | MS.gene051451:intron | 15.0% |
| !! | ATATTCACTAATATAAAAAC+AGG | + | chr1.1:47900806-47900825 | None:intergenic | 15.0% |
| !! | TATTCACTAATATAAAAACA+GGG | + | chr1.1:47900805-47900824 | None:intergenic | 15.0% |
| !! | TGATTATGTAAAATTGATTA+TGG | - | chr1.1:47900009-47900028 | MS.gene051451:intron | 15.0% |
| !! | TTTAGAGAATTCTAAATTAT+GGG | - | chr1.1:47901857-47901876 | MS.gene051451:intron | 15.0% |
| !!! | AAATAATTTAGTTTTTTGTG+GGG | - | chr1.1:47901724-47901743 | MS.gene051451:intron | 15.0% |
| !!! | AATTGACTTATTTAAACTTT+TGG | + | chr1.1:47901038-47901057 | None:intergenic | 15.0% |
| !!! | ATTGACTTATTTAAACTTTT+GGG | + | chr1.1:47901037-47901056 | None:intergenic | 15.0% |
| !!! | GAAATAATTTAGTTTTTTGT+GGG | - | chr1.1:47901723-47901742 | MS.gene051451:intron | 15.0% |
| !!! | GTTTTTATATTAGTGAATAT+GGG | - | chr1.1:47900806-47900825 | MS.gene051451:intron | 15.0% |
| !!! | TGAAATAATTTAGTTTTTTG+TGG | - | chr1.1:47901722-47901741 | MS.gene051451:intron | 15.0% |
| !!! | TGAAATTTTTAGAATTATTC+TGG | - | chr1.1:47901302-47901321 | MS.gene051451:intron | 15.0% |
| !!! | TGATAATAATTGATTTTGAA+TGG | - | chr1.1:47899984-47900003 | MS.gene051451:intron | 15.0% |
| !!! | TGTTTTTATATTAGTGAATA+TGG | - | chr1.1:47900805-47900824 | MS.gene051451:intron | 15.0% |
| !!! | TTGTTTTATTATTATTCTTG+TGG | - | chr1.1:47900542-47900561 | MS.gene051451:intron | 15.0% |
| !!! | TTTTAGAGAATTCTAAATTA+TGG | - | chr1.1:47901856-47901875 | MS.gene051451:intron | 15.0% |
| !! | AAAATAAAACTACATACAGT+GGG | + | chr1.1:47901995-47902014 | None:intergenic | 20.0% |
| !! | AAATAAACAGTAATATCAGA+AGG | + | chr1.1:47902487-47902506 | None:intergenic | 20.0% |
| !! | AACTATTAGAAAAGATTTAG+AGG | - | chr1.1:47901540-47901559 | MS.gene051451:intron | 20.0% |
| !! | ACTTTAAGTCAAAATCAATT+CGG | - | chr1.1:47900115-47900134 | MS.gene051451:intron | 20.0% |
| !! | TATATATTACTTAGCAAATG+CGG | + | chr1.1:47901834-47901853 | None:intergenic | 20.0% |
| !! | TTAGAGAATTCTAAATTATG+GGG | - | chr1.1:47901858-47901877 | MS.gene051451:intron | 20.0% |
| !!! | AGAATTGATTAGAACATTTT+TGG | + | chr1.1:47900420-47900439 | None:intergenic | 20.0% |
| !!! | ATTTTAAGACAAAAAAACAC+AGG | - | chr1.1:47900717-47900736 | MS.gene051451:intron | 20.0% |
| !!! | ATTTTGAGTTGAAATGATTT+GGG | - | chr1.1:47900280-47900299 | MS.gene051451:intron | 20.0% |
| !!! | GCTGAAATTGAATTATTTTT+CGG | - | chr1.1:47902229-47902248 | MS.gene051451:intron | 20.0% |
| !!! | GTTTTATTTTGTTCAGTAAT+TGG | - | chr1.1:47902005-47902024 | MS.gene051451:intron | 20.0% |
| ! | AACATAGACAAGGTATATAT+AGG | + | chr1.1:47901167-47901186 | None:intergenic | 25.0% |
| ! | AACATATCTTTCTTTCAGAT+AGG | - | chr1.1:47900916-47900935 | MS.gene051451:intron | 25.0% |
| ! | ACATATCTTTCTTTCAGATA+GGG | - | chr1.1:47900917-47900936 | MS.gene051451:intron | 25.0% |
| ! | AGCATTAAAAATTGTGTGTT+AGG | - | chr1.1:47901909-47901928 | MS.gene051451:intron | 25.0% |
| ! | ATAAGTCAATTAACCATAAC+TGG | - | chr1.1:47901047-47901066 | MS.gene051451:intron | 25.0% |
| ! | ATTGTATTGCTTTATAGTTG+AGG | - | chr1.1:47900837-47900856 | MS.gene051451:intron | 25.0% |
| ! | CAAAATAAAACTACATACAG+TGG | + | chr1.1:47901996-47902015 | None:intergenic | 25.0% |
| ! | GTTCTATCATAATCCATATT+TGG | + | chr1.1:47901580-47901599 | None:intergenic | 25.0% |
| ! | TAAGTGCATTATGATGTAAT+AGG | - | chr1.1:47902317-47902336 | MS.gene051451:intron | 25.0% |
| ! | TAATGAGTTTGATCCAAATA+TGG | - | chr1.1:47901564-47901583 | MS.gene051451:intron | 25.0% |
| ! | TGATTATGTTTGGATTCATT+GGG | - | chr1.1:47900056-47900075 | MS.gene051451:intron | 25.0% |
| ! | TTACATACAAAGTGTATGTT+TGG | + | chr1.1:47900483-47900502 | None:intergenic | 25.0% |
| ! | TTGATTATGTTTGGATTCAT+TGG | - | chr1.1:47900055-47900074 | MS.gene051451:intron | 25.0% |
| !! | AGAGTATAGCTTTTCATTAA+AGG | - | chr1.1:47902413-47902432 | MS.gene051451:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr1.1:47901523-47901542 | None:intergenic | 25.0% |
| !! | TGGATTATGATAGAACATTT+TGG | - | chr1.1:47901584-47901603 | MS.gene051451:intron | 25.0% |
| !! | TGGATTTATACATGTTTTCA+AGG | - | chr1.1:47902025-47902044 | MS.gene051451:intron | 25.0% |
| !! | TGTTTTTCGTTCTTATGTTT+TGG | - | chr1.1:47900615-47900634 | MS.gene051451:intron | 25.0% |
| !! | TTTGCGCATATATATTGTTT+TGG | - | chr1.1:47902109-47902128 | MS.gene051451:intron | 25.0% |
| !!! | ACACCTCTAAAATCAATTTT+TGG | - | chr1.1:47900440-47900459 | MS.gene051451:intron | 25.0% |
| !!! | GATTTTGAGTTGAAATGATT+TGG | - | chr1.1:47900279-47900298 | MS.gene051451:intron | 25.0% |
| AAACATAGAGTTTGCAAGAA+TGG | + | chr1.1:47902147-47902166 | None:intergenic | 30.0% | |
| AAATCTTCATCAAGAGGTAA+AGG | + | chr1.1:47899853-47899872 | None:intergenic | 30.0% | |
| AATTGATACTACTTGAAGCT+AGG | + | chr1.1:47900380-47900399 | None:intergenic | 30.0% | |
| ACAAAATTCAGCTTGATTGA+AGG | + | chr1.1:47900994-47901013 | None:intergenic | 30.0% | |
| ACGAAAAACAAAAAACGAGT+TGG | + | chr1.1:47900605-47900624 | None:intergenic | 30.0% | |
| AGAAGAAAACACTTCAAAAC+AGG | + | chr1.1:47900868-47900887 | None:intergenic | 30.0% | |
| ATGAGGTGGTTAAAATTGAT+TGG | + | chr1.1:47902279-47902298 | None:intergenic | 30.0% | |
| ATTAACTTTGGTCCATTATC+TGG | + | chr1.1:47902586-47902605 | None:intergenic | 30.0% | |
| ATTCTTGTGGTTAAGACTTA+AGG | - | chr1.1:47900555-47900574 | MS.gene051451:intron | 30.0% | |
| CAAGTGAAGATACTAGAAAT+TGG | + | chr1.1:47902065-47902084 | None:intergenic | 30.0% | |
| CGAAAAACAAAAAACGAGTT+GGG | + | chr1.1:47900604-47900623 | None:intergenic | 30.0% | |
| CGAAACTAATGATTTAGTGT+AGG | - | chr1.1:47900140-47900159 | MS.gene051451:intron | 30.0% | |
| CGTTCAAAATTCTTGATCAA+AGG | - | chr1.1:47899778-47899797 | MS.gene051451:CDS | 30.0% | |
| CTTCACTTGAAATCTTAACT+TGG | - | chr1.1:47902076-47902095 | MS.gene051451:intron | 30.0% | |
| GAAAAACAAAAAACGAGTTG+GGG | + | chr1.1:47900603-47900622 | None:intergenic | 30.0% | |
| GAATGTTCGATAAGATTGAA+AGG | + | chr1.1:47900781-47900800 | None:intergenic | 30.0% | |
| GTATGAACTCATAAAGTAGA+TGG | - | chr1.1:47900888-47900907 | MS.gene051451:intron | 30.0% | |
| GTTTGCAAAATTTGTGTGTT+TGG | - | chr1.1:47899953-47899972 | MS.gene051451:intron | 30.0% | |
| TACCAAGTAATTAACATGCA+TGG | + | chr1.1:47901964-47901983 | None:intergenic | 30.0% | |
| TGCAGTATGAAACAAATGAT+GGG | - | chr1.1:47902508-47902527 | MS.gene051451:CDS | 30.0% | |
| ! | CAATTTTGCCTCTTAAAATG+TGG | - | chr1.1:47900504-47900523 | MS.gene051451:intron | 30.0% |
| ! | CTGAATTTTGTCCTTAATCT+AGG | - | chr1.1:47901003-47901022 | MS.gene051451:intron | 30.0% |
| ! | GGACAAGCATATTTTACAAA+GGG | + | chr1.1:47901212-47901231 | None:intergenic | 30.0% |
| ! | GTAGTATGAAGAGTATATGT+CGG | - | chr1.1:47901476-47901495 | MS.gene051451:intron | 30.0% |
| !! | ATTATTCTGGAATGTTGTGT+TGG | - | chr1.1:47901315-47901334 | MS.gene051451:intron | 30.0% |
| !! | ATTTAGTTTGCACTATGATG+AGG | + | chr1.1:47902296-47902315 | None:intergenic | 30.0% |
| !!! | AATTTGTGTGTTTGGTTTTG+CGG | - | chr1.1:47899961-47899980 | MS.gene051451:intron | 30.0% |
| !!! | TTTCGTTCTTATGTTTTGGT+TGG | - | chr1.1:47900619-47900638 | MS.gene051451:intron | 30.0% |
| AAAGGCTTTCTATCTTCTTG+AGG | + | chr1.1:47899835-47899854 | None:intergenic | 35.0% | |
| AACCAAGCATACACATACAT+AGG | + | chr1.1:47900242-47900261 | None:intergenic | 35.0% | |
| AACCTATGTATGTGTATGCT+TGG | - | chr1.1:47900237-47900256 | MS.gene051451:intron | 35.0% | |
| ACTTCCATCCAATTTCTTAC+AGG | + | chr1.1:47901078-47901097 | None:intergenic | 35.0% | |
| AGACAAAAAAACACAGGAGA+CGG | - | chr1.1:47900723-47900742 | MS.gene051451:intron | 35.0% | |
| AGACAAGGTATATATAGGAC+TGG | + | chr1.1:47901162-47901181 | None:intergenic | 35.0% | |
| CTCCATGCATGTTAATTACT+TGG | - | chr1.1:47901959-47901978 | MS.gene051451:intron | 35.0% | |
| CTTAAAGGCAAACATAGACA+AGG | + | chr1.1:47901177-47901196 | None:intergenic | 35.0% | |
| CTTCATACTACAGAATCTAC+AGG | + | chr1.1:47901467-47901486 | None:intergenic | 35.0% | |
| CTTCCATCCAATTTCTTACA+GGG | + | chr1.1:47901077-47901096 | None:intergenic | 35.0% | |
| GGTAAATGAAGTTATGCTTG+TGG | - | chr1.1:47901098-47901117 | MS.gene051451:intron | 35.0% | |
| GTGCAGTATGAAACAAATGA+TGG | - | chr1.1:47902507-47902526 | MS.gene051451:CDS | 35.0% | |
| TGTAAGAAATTGGATGGAAG+TGG | - | chr1.1:47901077-47901096 | MS.gene051451:intron | 35.0% | |
| ! | ATGTTTGGTTCCATTTGTAG+AGG | + | chr1.1:47900468-47900487 | None:intergenic | 35.0% |
| ! | CAAGAATTTTGAACGACGAT+CGG | + | chr1.1:47899773-47899792 | None:intergenic | 35.0% |
| ! | GGGACAAGCATATTTTACAA+AGG | + | chr1.1:47901213-47901232 | None:intergenic | 35.0% |
| ! | GTTTCGTTCCACATTTTAAG+AGG | + | chr1.1:47900515-47900534 | None:intergenic | 35.0% |
| ! | TCTATCAAGTGTTGTTCGTT+TGG | - | chr1.1:47900650-47900669 | MS.gene051451:intron | 35.0% |
| ! | TGGTCATTGTTGTTGTATTC+TGG | - | chr1.1:47901652-47901671 | MS.gene051451:intron | 35.0% |
| ! | TGTTTGGTTCCATTTGTAGA+GGG | + | chr1.1:47900467-47900486 | None:intergenic | 35.0% |
| ! | TTCTTTCGAAGCTGCATTTT+GGG | + | chr1.1:47901889-47901908 | None:intergenic | 35.0% |
| ! | TTTCTTTCGAAGCTGCATTT+TGG | + | chr1.1:47901890-47901909 | None:intergenic | 35.0% |
| !! | GAGTATTGAAACTGAAGCAA+AGG | + | chr1.1:47900756-47900775 | None:intergenic | 35.0% |
| !! | GGGCCAAAAATTGATTTTAG+AGG | + | chr1.1:47900446-47900465 | None:intergenic | 35.0% |
| ACATAGGTTCCATATCATCG+TGG | + | chr1.1:47900226-47900245 | None:intergenic | 40.0% | |
| ACGGTGGATCATTGTGATTA+TGG | - | chr1.1:47900195-47900214 | MS.gene051451:intron | 40.0% | |
| ACTAAGTGAGATCAGCTACA+TGG | + | chr1.1:47901621-47901640 | None:intergenic | 40.0% | |
| AGACCCTGTAAGAAATTGGA+TGG | - | chr1.1:47901071-47901090 | MS.gene051451:intron | 40.0% | |
| AGGTGGTAGGAAATAAGCTT+AGG | - | chr1.1:47901417-47901436 | MS.gene051451:intron | 40.0% | |
| ATGCAGTGAACTAGAAGCAA+TGG | + | chr1.1:47902204-47902223 | None:intergenic | 40.0% | |
| ATGTAGCTGATCTCACTTAG+TGG | - | chr1.1:47901620-47901639 | MS.gene051451:CDS | 40.0% | |
| CTGCAATATAAGCTGGGAAT+GGG | + | chr1.1:47901233-47901252 | None:intergenic | 40.0% | |
| CTTGATCAAAGGAGATGACA+TGG | - | chr1.1:47899789-47899808 | MS.gene051451:CDS | 40.0% | |
| GAAATAAGCTTAGGCGGTTT+GGG | - | chr1.1:47901426-47901445 | MS.gene051451:intron | 40.0% | |
| GATGAAGATTTGCCTGGAAT+GGG | - | chr1.1:47899862-47899881 | MS.gene051451:intron | 40.0% | |
| GCAAGTCTGCAATATAAGCT+GGG | + | chr1.1:47901239-47901258 | None:intergenic | 40.0% | |
| GGGAAAATGAGCCTAGATTA+AGG | + | chr1.1:47901017-47901036 | None:intergenic | 40.0% | |
| GGGAGTAAAAACTCGCTTAA+AGG | + | chr1.1:47901192-47901211 | None:intergenic | 40.0% | |
| TACTCCAACTCTCTCTCTAA+CGG | + | chr1.1:47901381-47901400 | None:intergenic | 40.0% | |
| TAGAGATATACTCGCAGTGA+AGG | + | chr1.1:47899900-47899919 | None:intergenic | 40.0% | |
| TCTGCAATATAAGCTGGGAA+TGG | + | chr1.1:47901234-47901253 | None:intergenic | 40.0% | |
| TGATCTCACTTAGTGGGATA+AGG | - | chr1.1:47901627-47901646 | MS.gene051451:CDS | 40.0% | |
| TGATGAAGATTTGCCTGGAA+TGG | - | chr1.1:47899861-47899880 | MS.gene051451:intron | 40.0% | |
| TGCAAGTCTGCAATATAAGC+TGG | + | chr1.1:47901240-47901259 | None:intergenic | 40.0% | |
| TGCAGTGAACTAGAAGCAAT+GGG | + | chr1.1:47902203-47902222 | None:intergenic | 40.0% | |
| TGGAAGACCCTGTAAGAAAT+TGG | - | chr1.1:47901067-47901086 | MS.gene051451:intron | 40.0% | |
| TGGTAGGAAATAAGCTTAGG+CGG | - | chr1.1:47901420-47901439 | MS.gene051451:intron | 40.0% | |
| TGTAGCTGATCTCACTTAGT+GGG | - | chr1.1:47901621-47901640 | MS.gene051451:CDS | 40.0% | |
| ! | AGGAGCTTTAGTATCATGGT+GGG | - | chr1.1:47900160-47900179 | MS.gene051451:intron | 40.0% |
| ! | GTGTAGGAGCTTTAGTATCA+TGG | - | chr1.1:47900156-47900175 | MS.gene051451:intron | 40.0% |
| ! | GTTTGGTTCCATTTGTAGAG+GGG | + | chr1.1:47900466-47900485 | None:intergenic | 40.0% |
| ! | TAGGAGCTTTAGTATCATGG+TGG | - | chr1.1:47900159-47900178 | MS.gene051451:intron | 40.0% |
| ! | TAGTTTGCACTATGATGAGG+TGG | + | chr1.1:47902293-47902312 | None:intergenic | 40.0% |
| !! | AGTATATGTCGGCTCAAAAG+AGG | - | chr1.1:47901487-47901506 | MS.gene051451:intron | 40.0% |
| !! | CAACTTGATGCTGATTTAGC+TGG | - | chr1.1:47902547-47902566 | MS.gene051451:CDS | 40.0% |
| !! | TTGATGCTGATTTAGCTGGA+GGG | - | chr1.1:47902551-47902570 | MS.gene051451:CDS | 40.0% |
| !!! | AGTTTTTTGTGGGGCAATGT+GGG | - | chr1.1:47901733-47901752 | MS.gene051451:intron | 40.0% |
| !!! | ATTTTTGGCCCCTCTACAAA+TGG | - | chr1.1:47900455-47900474 | MS.gene051451:intron | 40.0% |
| !!! | TAGTTTTTTGTGGGGCAATG+TGG | - | chr1.1:47901732-47901751 | MS.gene051451:intron | 40.0% |
| AGACTAGACGGGATAGGATT+AGG | - | chr1.1:47901348-47901367 | MS.gene051451:intron | 45.0% | |
| AGGAAAATGTCCACACAGGA+AGG | - | chr1.1:47899720-47899739 | MS.gene051451:CDS | 45.0% | |
| AGTAGCACCTGTGGTAGAAA+AGG | - | chr1.1:47901397-47901416 | MS.gene051451:intron | 45.0% | |
| ATGGCGTATCCACGATGATA+TGG | - | chr1.1:47900214-47900233 | MS.gene051451:intron | 45.0% | |
| CAATAGTGTTGTCCCATTCC+AGG | + | chr1.1:47899877-47899896 | None:intergenic | 45.0% | |
| CCAGGCAAATCTTCATCAAG+AGG | + | chr1.1:47899859-47899878 | None:intergenic | 45.0% | |
| CCTCTTGATGAAGATTTGCC+TGG | - | chr1.1:47899856-47899875 | MS.gene051451:intron | 45.0% | |
| CTTAAAATGCTCGTCCCTCA+CGG | + | chr1.1:47900705-47900724 | None:intergenic | 45.0% | |
| CTTACAGGGTCTTCCAGTTA+TGG | + | chr1.1:47901063-47901082 | None:intergenic | 45.0% | |
| GATGAGTGGTAAGACTAGAC+GGG | - | chr1.1:47901337-47901356 | MS.gene051451:intron | 45.0% | |
| GGAAATAAGCTTAGGCGGTT+TGG | - | chr1.1:47901425-47901444 | MS.gene051451:intron | 45.0% | |
| GGAATGTTGTGTTGGATGAG+TGG | - | chr1.1:47901323-47901342 | MS.gene051451:intron | 45.0% | |
| GGATGAGTGGTAAGACTAGA+CGG | - | chr1.1:47901336-47901355 | MS.gene051451:intron | 45.0% | |
| TCACTTAGTGGGATAAGGCT+TGG | - | chr1.1:47901632-47901651 | MS.gene051451:intron | 45.0% | |
| ! | TGGTGGGTATGTCAACATCA+CGG | - | chr1.1:47900176-47900195 | MS.gene051451:intron | 45.0% |
| !! | CTTGATGCTGATTTAGCTGG+AGG | - | chr1.1:47902550-47902569 | MS.gene051451:CDS | 45.0% |
| !! | TCAGCATCAAGTTGAGTGTG+TGG | + | chr1.1:47902541-47902560 | None:intergenic | 45.0% |
| !!! | GTTTTTTGTGGGGCAATGTG+GGG | - | chr1.1:47901734-47901753 | MS.gene051451:intron | 45.0% |
| AGCACCTGTGGTAGAAAAGG+TGG | - | chr1.1:47901400-47901419 | MS.gene051451:intron | 50.0% | |
| CCTGTGGTAGAAAAGGTGGT+AGG | - | chr1.1:47901404-47901423 | MS.gene051451:intron | 50.0% | |
| CTCTTCTTCACCTTCCTGTG+TGG | + | chr1.1:47899733-47899752 | None:intergenic | 50.0% | |
| GACACCGTTAGAGAGAGAGT+TGG | - | chr1.1:47901374-47901393 | MS.gene051451:intron | 50.0% | |
| GGGATGGGAATGCCAGATAA+TGG | - | chr1.1:47902571-47902590 | MS.gene051451:CDS | 50.0% | |
| GTGGTAAGACTAGACGGGAT+AGG | - | chr1.1:47901342-47901361 | MS.gene051451:intron | 50.0% | |
| TGGGAGGAAAATGTCCACAC+AGG | - | chr1.1:47899716-47899735 | MS.gene051451:CDS | 50.0% | |
| TGGGTATGTCAACATCACGG+TGG | - | chr1.1:47900179-47900198 | MS.gene051451:intron | 50.0% | |
| ! | CCTACCACCTTTTCTACCAC+AGG | + | chr1.1:47901407-47901426 | None:intergenic | 50.0% |
| ! | GCTGATTTAGCTGGAGGGAT+GGG | - | chr1.1:47902556-47902575 | MS.gene051451:CDS | 50.0% |
| !! | TGCTGATTTAGCTGGAGGGA+TGG | - | chr1.1:47902555-47902574 | MS.gene051451:CDS | 50.0% |
| !! | TGTCGGCTCAAAAGAGGTAG+CGG | - | chr1.1:47901493-47901512 | MS.gene051451:intron | 50.0% |
| CTTTGCCAGTGTAGCCGTGA+GGG | - | chr1.1:47900688-47900707 | MS.gene051451:intron | 55.0% | |
| GAGAGTTGGAGTAGCACCTG+TGG | - | chr1.1:47901388-47901407 | MS.gene051451:intron | 55.0% | |
| GCAATGTGGGGCAAGGTTGA+TGG | - | chr1.1:47901746-47901765 | MS.gene051451:intron | 55.0% | |
| TCTTTGCCAGTGTAGCCGTG+AGG | - | chr1.1:47900687-47900706 | MS.gene051451:intron | 55.0% | |
| TTGTGGGGCAATGTGGGGCA+AGG | - | chr1.1:47901739-47901758 | MS.gene051451:intron | 60.0% | |
| ! | GCTTAGGCGGTTTGGGCATG+TGG | - | chr1.1:47901433-47901452 | MS.gene051451:intron | 60.0% |
| CTCGTCCCTCACGGCTACAC+TGG | + | chr1.1:47900696-47900715 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 47899715 | 47902615 | 47899715 | ID=MS.gene051451 |
| chr1.1 | mRNA | 47899715 | 47902615 | 47899715 | ID=MS.gene051451.t1;Parent=MS.gene051451 |
| chr1.1 | exon | 47902422 | 47902615 | 47902422 | ID=MS.gene051451.t1.exon1;Parent=MS.gene051451.t1 |
| chr1.1 | CDS | 47902422 | 47902615 | 47902422 | ID=cds.MS.gene051451.t1;Parent=MS.gene051451.t1 |
| chr1.1 | exon | 47901586 | 47901648 | 47901586 | ID=MS.gene051451.t1.exon2;Parent=MS.gene051451.t1 |
| chr1.1 | CDS | 47901586 | 47901648 | 47901586 | ID=cds.MS.gene051451.t1;Parent=MS.gene051451.t1 |
| chr1.1 | exon | 47899715 | 47899817 | 47899715 | ID=MS.gene051451.t1.exon3;Parent=MS.gene051451.t1 |
| chr1.1 | CDS | 47899715 | 47899817 | 47899715 | ID=cds.MS.gene051451.t1;Parent=MS.gene051451.t1 |
| Gene Sequence |
| Protein sequence |
