AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013970.t1 MTR_7g089080 98.048 461 8 1 1 461 1 460 0.0 927
MS.gene013970.t1 MTR_5g088980 53.247 462 165 14 1 456 1 417 1.42e-152 440
MS.gene013970.t1 MTR_8g074000 47.670 279 133 4 183 457 159 428 1.39e-84 266
MS.gene013970.t1 MTR_5g023790 36.952 433 214 10 34 457 42 424 5.48e-83 262
MS.gene013970.t1 MTR_5g023790 48.085 235 111 3 183 414 155 381 5.28e-72 232
MS.gene013970.t1 MTR_1g011470 41.392 273 155 5 183 452 145 415 2.64e-62 208
MS.gene013970.t1 MTR_3g088415 39.007 282 161 8 179 453 220 497 1.52e-57 198
MS.gene013970.t1 MTR_3g107970 39.636 275 157 7 183 452 197 467 3.38e-57 196
MS.gene013970.t1 MTR_1g018680 40.154 259 145 6 200 451 91 346 9.08e-55 187
MS.gene013970.t1 MTR_5g023790 51.235 162 78 1 183 343 155 316 1.98e-52 181
MS.gene013970.t1 MTR_2g102550 38.276 290 168 8 168 450 134 419 4.79e-52 181
MS.gene013970.t1 MTR_3g088405 36.765 272 161 9 176 440 220 487 1.17e-51 182
MS.gene013970.t1 MTR_3g061680 38.783 263 149 5 193 450 15 270 1.25e-51 176
MS.gene013970.t1 MTR_3g088415 42.396 217 119 5 179 392 220 433 2.93e-51 179
MS.gene013970.t1 MTR_3g060770 40.486 247 135 6 199 440 31 270 9.03e-51 174
MS.gene013970.t1 MTR_2g102520 36.842 285 171 7 178 456 194 475 2.46e-50 178
MS.gene013970.t1 MTR_3g102520 36.641 262 160 5 200 456 91 351 2.24e-48 170
MS.gene013970.t1 MTR_3g060820 38.132 257 147 6 199 450 21 270 3.78e-48 167
MS.gene013970.t1 MTR_3g060400 37.354 257 149 5 199 450 27 276 3.75e-47 164
MS.gene013970.t1 MTR_3g460990 37.354 257 149 5 199 450 27 276 3.75e-47 164
MS.gene013970.t1 MTR_3g102510 35.000 260 165 4 200 456 74 332 5.50e-47 166
MS.gene013970.t1 MTR_3g060410 39.301 229 132 3 226 450 130 355 4.08e-45 161
MS.gene013970.t1 MTR_5g044040 92.208 77 6 0 253 329 7 83 7.26e-45 153
MS.gene013970.t1 MTR_5g044040 60.938 64 17 1 407 462 60 123 4.42e-17 77.8
MS.gene013970.t1 MTR_3g102560 36.905 252 148 6 205 451 69 314 1.00e-41 151
MS.gene013970.t1 MTR_3g102530 33.577 274 167 5 181 451 78 339 5.79e-41 150
MS.gene013970.t1 MTR_3g088415 44.311 167 90 3 179 343 220 385 4.96e-40 148
MS.gene013970.t1 MTR_6g045270 37.687 268 142 8 199 457 45 296 4.52e-39 144
MS.gene013970.t1 MTR_5g011900 38.158 228 130 3 150 371 18 240 1.10e-36 135
MS.gene013970.t1 MTR_3g102540 33.594 256 156 7 204 452 13 261 2.25e-35 132
MS.gene013970.t1 MTR_2g005960 36.364 132 68 3 176 291 97 228 2.66e-19 87.0
MS.gene013970.t1 MTR_1g032850 30.366 191 121 6 230 416 370 552 1.85e-14 75.9
MS.gene013970.t1 MTR_3g103080 31.356 118 78 1 230 344 65 182 5.96e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013970.t1 AT5G06150 54.584 469 173 10 1 461 1 437 6.09e-159 457
MS.gene013970.t1 AT3G11520 55.459 458 155 13 1 457 1 410 4.05e-152 439
MS.gene013970.t1 AT4G37490 52.654 471 159 14 1 457 2 422 1.61e-140 410
MS.gene013970.t1 AT3G11520 55.904 415 134 13 1 414 1 367 1.74e-136 398
MS.gene013970.t1 AT2G26760 54.622 357 146 7 98 451 34 377 2.64e-125 369
MS.gene013970.t1 AT5G06150 55.294 340 121 7 12 343 9 325 4.49e-110 329
MS.gene013970.t1 AT1G76310 39.529 425 204 10 38 458 56 431 4.89e-91 283
MS.gene013970.t1 AT1G20610 38.293 457 216 10 21 457 19 429 9.08e-91 283
MS.gene013970.t1 AT1G76310 37.086 453 204 11 38 458 56 459 6.49e-85 268
MS.gene013970.t1 AT1G16330 41.883 308 166 5 155 458 350 648 2.67e-80 261
MS.gene013970.t1 AT1G76310 39.370 381 178 10 38 414 56 387 1.60e-78 249
MS.gene013970.t1 AT2G17620 48.921 278 131 3 183 457 154 423 2.86e-78 250
MS.gene013970.t1 AT1G34460 45.882 340 111 9 12 343 121 395 1.78e-75 244
MS.gene013970.t1 AT1G34460 45.906 342 105 10 12 343 121 392 2.04e-75 244
MS.gene013970.t1 AT1G34460 45.906 342 105 10 12 343 121 392 2.04e-75 244
MS.gene013970.t1 AT1G34460 46.491 342 106 11 12 343 121 395 2.20e-75 244
MS.gene013970.t1 AT1G34460 46.491 342 106 11 12 343 121 395 2.20e-75 244
MS.gene013970.t1 AT1G34460 46.491 342 106 11 12 343 121 395 2.20e-75 244
MS.gene013970.t1 AT1G34460 46.491 342 106 11 12 343 121 395 2.20e-75 244
MS.gene013970.t1 AT1G34460 45.882 340 111 9 12 343 121 395 3.65e-75 244
MS.gene013970.t1 AT1G34460 45.690 348 112 11 6 343 101 381 5.11e-75 243
MS.gene013970.t1 AT4G35620 47.292 277 139 3 183 458 155 425 1.37e-74 241
MS.gene013970.t1 AT4G35620 49.785 233 110 3 183 414 155 381 5.97e-65 214
MS.gene013970.t1 AT1G44110 40.221 271 155 6 182 448 177 444 5.90e-61 206
MS.gene013970.t1 AT1G80370 38.790 281 166 6 173 450 172 449 1.93e-59 202
MS.gene013970.t1 AT1G77390 42.045 264 144 7 182 440 161 420 4.90e-59 200
MS.gene013970.t1 AT1G76310 39.032 310 142 8 38 343 56 322 6.39e-59 197
MS.gene013970.t1 AT5G25380 38.351 279 165 6 182 456 156 431 3.80e-57 195
MS.gene013970.t1 AT5G25380 38.351 279 165 6 182 456 156 431 3.80e-57 195
MS.gene013970.t1 AT5G25380 38.351 279 165 6 182 456 162 437 4.70e-57 195
MS.gene013970.t1 AT5G25380 39.544 263 152 6 182 440 156 415 2.80e-56 192
MS.gene013970.t1 AT5G11300 39.427 279 162 6 182 456 155 430 5.04e-56 192
MS.gene013970.t1 AT5G43080 36.462 277 162 6 185 456 73 340 6.51e-55 187
MS.gene013970.t1 AT1G47210 38.129 278 163 7 185 456 88 362 1.29e-54 187
MS.gene013970.t1 AT5G43080 35.816 282 162 6 185 456 73 345 5.90e-54 184
MS.gene013970.t1 AT1G15570 36.242 298 183 6 164 456 151 446 7.91e-54 187
MS.gene013970.t1 AT1G47220 39.427 279 158 8 185 456 42 316 3.70e-53 181
MS.gene013970.t1 AT1G47230 39.256 242 144 3 219 458 117 357 1.13e-51 179
MS.gene013970.t1 AT1G20590 47.159 176 87 2 257 432 63 232 8.41e-51 173
MS.gene013970.t1 AT1G47230 39.095 243 144 4 219 458 117 358 6.96e-50 174
MS.gene013970.t1 AT5G11300 43.779 217 116 5 182 395 155 368 2.34e-49 174
MS.gene013970.t1 AT1G47210 42.453 106 56 4 185 286 88 192 4.04e-20 88.6
MS.gene013970.t1 AT1G14750 29.231 195 127 5 230 420 385 572 1.82e-15 79.3
MS.gene013970.t1 AT1G14750 29.744 195 126 5 230 420 385 572 1.86e-15 79.3
MS.gene013970.t1 AT1G14750 28.718 195 128 4 230 420 217 404 5.36e-15 77.0
MS.gene013970.t1 AT1G14750 28.718 195 127 5 230 420 217 403 3.27e-14 74.7

Find 108 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTGAGATAAAGGGTTTC+AGG 0.206490 7.2:-19439817 None:intergenic
ACTTTCTTCTGAACAGGTTT+AGG 0.221645 7.2:-19439184 None:intergenic
GGAAATGTTGTCACACTAAA+AGG 0.238632 7.2:+19438864 MS.gene013970:CDS
CGTAGACCACTTCTTGATAT+TGG 0.257214 7.2:+19438843 MS.gene013970:CDS
CTCCTTGTGACAGGGCGATT+TGG 0.266023 7.2:-19438900 None:intergenic
CTTTCTTCTGAACAGGTTTA+GGG 0.273791 7.2:-19439183 None:intergenic
CTATGTTGATTGTGAGATAA+AGG 0.290156 7.2:-19439825 None:intergenic
GAAATCTGTGCACAAGAAAA+AGG 0.325466 7.2:+19439270 MS.gene013970:CDS
TGATGCATTATGCTACATTA+AGG 0.329648 7.2:+19440169 MS.gene013970:CDS
GCAGTGACTTTCTTCTGAAC+AGG 0.349419 7.2:-19439190 None:intergenic
GCTGAGGCAGCAAGCATTGA+TGG 0.393892 7.2:-19440198 None:intergenic
GGTAGCAGAAGTTTCTTTGC+CGG 0.395605 7.2:-19440423 None:intergenic
CTCATCCTCTCATTTATCTC+AGG 0.404632 7.2:-19439742 None:intergenic
TCAATAACTTCCACAGGCTT+AGG 0.404728 7.2:-19439217 None:intergenic
CAACTGTTCTTCGGAGTAAC+CGG 0.407928 7.2:-19440286 None:intergenic
CCATCCTAGGAAAGCTTGAA+TGG 0.408581 7.2:+19440022 MS.gene013970:CDS
CAGAAGAAGAACGGTGCAGC+AGG 0.408866 7.2:+19438807 MS.gene013970:CDS
GCTCCTCCTGTTGTTGCTGA+TGG 0.409185 7.2:+19439127 MS.gene013970:CDS
TCAATGTCAACAATCTCCTT+TGG 0.409201 7.2:-19439502 None:intergenic
TATGTTGATTGTGAGATAAA+GGG 0.409760 7.2:-19439824 None:intergenic
CATCAAAGTATGAAGAAATC+TGG 0.422694 7.2:+19439923 MS.gene013970:CDS
AGCAGTTGCTGAAAACAATA+AGG 0.423523 7.2:+19438959 MS.gene013970:CDS
TGCTGTTGCCGCGCTTCCAC+CGG 0.426291 7.2:+19440404 MS.gene013970:CDS
AACTGCTGCTGCTTGTGCAT+TGG 0.426689 7.2:-19438943 None:intergenic
TTACTCCGAAGAACAGTTGA+TGG 0.428240 7.2:+19440290 MS.gene013970:CDS
TGAAGTAAGTTCTGAAGAAA+AGG 0.429447 7.2:+19439237 MS.gene013970:CDS
TTTCACTCTGGTGCTGAGAA+TGG 0.430700 7.2:+19440336 MS.gene013970:CDS
GTCAAGAAGGGAACTTCAAT+TGG 0.435390 7.2:+19439876 MS.gene013970:CDS
TGTTGTTGTTGTTGAACAAT+GGG 0.442659 7.2:-19438432 None:intergenic
TCACAATCAACATAGTTGAT+AGG 0.445143 7.2:+19439833 MS.gene013970:CDS
TGTTATAGGTGATGCTGCCT+TGG 0.451586 7.2:+19438770 MS.gene013970:intron
CCATTCAAGCTTTCCTAGGA+TGG 0.453248 7.2:-19440022 None:intergenic
AGAAGGGAACTTCAATTGGT+TGG 0.459265 7.2:+19439880 MS.gene013970:CDS
CTGTTGTTTCCCTCCTCCCA+AGG 0.460174 7.2:-19438787 None:intergenic
GATGGATTGTGCTAGGTTGT+TGG 0.467847 7.2:+19440308 MS.gene013970:CDS
CATTGAGCAAGACTCCTGTT+TGG 0.470579 7.2:+19440241 MS.gene013970:CDS
GTTCCTGGTTCGTTTCATCA+AGG 0.481189 7.2:+19440071 MS.gene013970:CDS
AAGTCCATTCAAGCTTTCCT+AGG 0.481341 7.2:-19440026 None:intergenic
GGTGATGCTGCCTTGGGAGG+AGG 0.482861 7.2:+19438777 MS.gene013970:intron
AGGAATACTCATTGATTGGC+TGG 0.482890 7.2:+19439765 MS.gene013970:CDS
TTGAGTGTCTCATTCCAAAC+AGG 0.483773 7.2:-19440255 None:intergenic
CTGTCAACCTTGTGTCAAGA+AGG 0.491215 7.2:+19439863 MS.gene013970:CDS
TGAGAGGAATACTCATTGAT+TGG 0.498998 7.2:+19439761 MS.gene013970:CDS
CTTACTTCAATAACTTCCAC+AGG 0.506470 7.2:-19439223 None:intergenic
GAAGAAGAACGGTGCAGCAG+GGG 0.508581 7.2:+19438809 MS.gene013970:CDS
GCAACTCCATCAGCAACAAC+AGG 0.508824 7.2:-19439133 None:intergenic
ACAATCCATCAACTGTTCTT+CGG 0.510480 7.2:-19440295 None:intergenic
TCTGCTACCTGCTGCTGTGT+AGG 0.513893 7.2:+19440437 MS.gene013970:CDS
TCTGCAGTTCCTTCTGATCA+AGG 0.516928 7.2:+19440105 MS.gene013970:CDS
ACAACAGGAGGAGCAGGTCC+AGG 0.526077 7.2:-19439118 None:intergenic
TCAAGGGGATTTCGAGATGA+TGG 0.530227 7.2:+19440122 MS.gene013970:CDS
GTGATGCTGCCTTGGGAGGA+GGG 0.530719 7.2:+19438778 MS.gene013970:CDS
AAGAACGGTGCAGCAGGGGA+AGG 0.535783 7.2:+19438813 MS.gene013970:CDS
AAACGAACCAGGAACACAAA+AGG 0.537440 7.2:-19440063 None:intergenic
GTTATAGGTGATGCTGCCTT+GGG 0.538221 7.2:+19438771 MS.gene013970:intron
TCGAAATCCCCTTGATCAGA+AGG 0.543161 7.2:-19440114 None:intergenic
GAGAGAACCTACACAGCAGC+AGG 0.545039 7.2:-19440444 None:intergenic
CAATATCAAGAAGTGGTCTA+CGG 0.545242 7.2:-19438842 None:intergenic
TCAGCAACAACAGGAGGAGC+AGG 0.545915 7.2:-19439124 None:intergenic
AGTGGCTAGAAGAGTGGTGG+TGG 0.553511 7.2:+19439159 MS.gene013970:CDS
TTGACACAAGGTTGACAGCA+AGG 0.554809 7.2:-19439858 None:intergenic
ACGGTGCAGCAGGGGAAGGA+AGG 0.557061 7.2:+19438817 MS.gene013970:CDS
CTGCAGTTCCTTCTGATCAA+GGG 0.565046 7.2:+19440106 MS.gene013970:CDS
GCTTGTGTCAATGTGGCACC+TGG 0.568366 7.2:+19439100 MS.gene013970:CDS
TGCAGTTCCTTCTGATCAAG+GGG 0.571084 7.2:+19440107 MS.gene013970:CDS
AGCCAAATCGCCCTGTCACA+AGG 0.571983 7.2:+19438898 MS.gene013970:CDS
GAGATTGTTGACATTGATGC+TGG 0.574052 7.2:+19439508 MS.gene013970:CDS
TGCTGATGGAGTTGCAGCAG+TGG 0.577732 7.2:+19439141 MS.gene013970:CDS
AACAGTTGATGGATTGTGCT+AGG 0.577876 7.2:+19440301 MS.gene013970:CDS
TGCAGCAGTGGCTAGAAGAG+TGG 0.581805 7.2:+19439153 MS.gene013970:CDS
TTTCTTTGCCGGTGGAAGCG+CGG 0.582062 7.2:-19440412 None:intergenic
CACACAAAGTCATTAACCTC+AGG 0.586086 7.2:-19439949 None:intergenic
AAGCCGTCCACATGATTACA+TGG 0.589639 7.2:+19439711 MS.gene013970:CDS
TCATGAACAGATTCTCGTCA+TGG 0.593660 7.2:+19439993 MS.gene013970:CDS
ATAGGTGATGCTGCCTTGGG+AGG 0.594991 7.2:+19438774 MS.gene013970:intron
TGTCCTCACTGCTAGAAGCA+AGG 0.595514 7.2:+19439336 MS.gene013970:CDS
GAAGTTCCCTTCTTGACACA+AGG 0.595803 7.2:-19439870 None:intergenic
AAGTACTCTGATCCTCAGAA+AGG 0.596937 7.2:+19440381 MS.gene013970:CDS
GAGACACTCAAGATGCATAC+CGG 0.598392 7.2:+19440267 MS.gene013970:CDS
GTCATGGAGAAAACCATCCT+AGG 0.598998 7.2:+19440009 MS.gene013970:CDS
AGCAGAAGTTTCTTTGCCGG+TGG 0.599208 7.2:-19440420 None:intergenic
CAGCCTTGATGAAACGAACC+AGG 0.601116 7.2:-19440074 None:intergenic
CACTGCAAAACCTAAGCCTG+TGG 0.603311 7.2:+19439207 MS.gene013970:CDS
CCTTGCTGCATAGACTGCTG+AGG 0.603952 7.2:-19440214 None:intergenic
TGGAATCAGTGCCATGCTGA+TGG 0.608887 7.2:+19439900 MS.gene013970:CDS
GAGATAAATGAGAGGATGAG+AGG 0.614173 7.2:+19439745 MS.gene013970:CDS
ACCAGGAACACAAAAGGTGT+CGG 0.622367 7.2:-19440057 None:intergenic
TTTCTTCTGAACAGGTTTAG+GGG 0.626802 7.2:-19439182 None:intergenic
AGAAGAAGAACGGTGCAGCA+GGG 0.627002 7.2:+19438808 MS.gene013970:CDS
ATACTTTGATGCCATCAGCA+TGG 0.630020 7.2:-19439911 None:intergenic
ACAAAGTCATTAACCTCAGG+TGG 0.630280 7.2:-19439946 None:intergenic
ACATTTCCAATATCAAGAAG+TGG 0.631314 7.2:-19438849 None:intergenic
TGTCAACCTTGTGTCAAGAA+GGG 0.639776 7.2:+19439864 MS.gene013970:CDS
TGCTGAGAATGGAAAGCTGA+AGG 0.640144 7.2:+19440347 MS.gene013970:CDS
GGGAAACAACAGAAGAAGAA+CGG 0.643525 7.2:+19438798 MS.gene013970:CDS
GCGGCAACAGCACCTTTCTG+AGG 0.644637 7.2:-19440393 None:intergenic
ACTCCATCAGCAACAACAGG+AGG 0.651848 7.2:-19439130 None:intergenic
GACTGTAAGCTCTATCTGAG+AGG 0.659855 7.2:-19439972 None:intergenic
CCTCAGCAGTCTATGCAGCA+AGG 0.660855 7.2:+19440214 MS.gene013970:CDS
CACAACCTGAGATAAATGAG+AGG 0.662919 7.2:+19439737 MS.gene013970:CDS
TGAAGAAATCTGGCCACCTG+AGG 0.663492 7.2:+19439933 MS.gene013970:CDS
TGGTTTGACTAACAAACCAA+AGG 0.666669 7.2:+19439486 MS.gene013970:CDS
AGTCCATGTAATCATGTGGA+CGG 0.674217 7.2:-19439714 None:intergenic
TGTGAGTCCATGTAATCATG+TGG 0.686546 7.2:-19439718 None:intergenic
GAAACAAGCTTGTGTCAATG+TGG 0.703443 7.2:+19439093 MS.gene013970:intron
AGCAGTGGCTAGAAGAGTGG+TGG 0.705939 7.2:+19439156 MS.gene013970:CDS
CAAGTTCTACAAGATAGTTG+AGG 0.706527 7.2:+19439579 MS.gene013970:CDS
AAACCTTGCTTCTAGCAGTG+AGG 0.715110 7.2:-19439339 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTCGATTTTTTA+GGG + chr7.2:19438653-19438672 MS.gene013970:intron 15.0%
!!! TTAAAAAGTTTCGATTTTTT+AGG + chr7.2:19438652-19438671 MS.gene013970:intron 15.0%
!!! ACTTTTTAAGATTTATCATC+TGG - chr7.2:19438641-19438660 None:intergenic 20.0%
!!! CTTTTTAAGATTTATCATCT+GGG - chr7.2:19438640-19438659 None:intergenic 20.0%
!!! TTTATGGTTTTATTTATCCT+GGG + chr7.2:19438497-19438516 MS.gene013970:intron 20.0%
! ACTTTGAGTAAAATAGTTTC+TGG + chr7.2:19438546-19438565 MS.gene013970:intron 25.0%
! CTTTGAGTAAAATAGTTTCT+GGG + chr7.2:19438547-19438566 MS.gene013970:intron 25.0%
! TTGCATCAAATCTAGTAAAA+GGG + chr7.2:19438678-19438697 MS.gene013970:intron 25.0%
! TTTGCATCAAATCTAGTAAA+AGG + chr7.2:19438677-19438696 MS.gene013970:intron 25.0%
!! ATTCTCTTTTACATGTTCTT+TGG + chr7.2:19439423-19439442 MS.gene013970:intron 25.0%
!! TATGTTGATTGTGAGATAAA+GGG - chr7.2:19439827-19439846 None:intergenic 25.0%
!!! CTTCAATCATTGATTCTTTA+TGG + chr7.2:19438481-19438500 MS.gene013970:intron 25.0%
!!! CTTTATGGTTTTATTTATCC+TGG + chr7.2:19438496-19438515 MS.gene013970:intron 25.0%
!!! TCTTTTTTGGATTTTGTGTT+TGG + chr7.2:19438707-19438726 MS.gene013970:intron 25.0%
!!! TGATGATTATTTTCTGAGAT+TGG + chr7.2:19439043-19439062 MS.gene013970:intron 25.0%
ACATTTCCAATATCAAGAAG+TGG - chr7.2:19438852-19438871 None:intergenic 30.0%
ATTGAAAGATCTTGCAAATC+TGG + chr7.2:19438600-19438619 MS.gene013970:intron 30.0%
CACAAACAAACATCAAAAAC+AGG - chr7.2:19438747-19438766 None:intergenic 30.0%
CATCAAAGTATGAAGAAATC+TGG + chr7.2:19439923-19439942 MS.gene013970:CDS 30.0%
GTTTGTTTGTGCAATGTTAT+AGG + chr7.2:19438756-19438775 MS.gene013970:intron 30.0%
TCACAATCAACATAGTTGAT+AGG + chr7.2:19439833-19439852 MS.gene013970:CDS 30.0%
TGATGCATTATGCTACATTA+AGG + chr7.2:19440169-19440188 MS.gene013970:CDS 30.0%
TTGAAAGATCTTGCAAATCT+GGG + chr7.2:19438601-19438620 MS.gene013970:intron 30.0%
! CTATGTTGATTGTGAGATAA+AGG - chr7.2:19439828-19439847 None:intergenic 30.0%
! TGTTCTTTTCCTGTTCTTTT+AGG + chr7.2:19439456-19439475 MS.gene013970:intron 30.0%
! TGTTGTTGTTGTTGAACAAT+GGG - chr7.2:19438435-19438454 None:intergenic 30.0%
! TTGTTGTTGTTGTTGAACAA+TGG - chr7.2:19438436-19438455 None:intergenic 30.0%
!! TGAAGTAAGTTCTGAAGAAA+AGG + chr7.2:19439237-19439256 MS.gene013970:CDS 30.0%
!!! AAAAGGGTCTTGTTCTTTTT+TGG + chr7.2:19438694-19438713 MS.gene013970:intron 30.0%
ACAATCCATCAACTGTTCTT+CGG - chr7.2:19440298-19440317 None:intergenic 35.0%
ACTTTCTTCTGAACAGGTTT+AGG - chr7.2:19439187-19439206 None:intergenic 35.0%
AGAAAACACAAACAAACCTC+TGG - chr7.2:19438463-19438482 None:intergenic 35.0%
AGAACAAAAACATTGAACCC+AGG - chr7.2:19438517-19438536 None:intergenic 35.0%
AGCAGTTGCTGAAAACAATA+AGG + chr7.2:19438959-19438978 MS.gene013970:CDS 35.0%
ATTGTGAGATAAAGGGTTTC+AGG - chr7.2:19439820-19439839 None:intergenic 35.0%
CAAGTTCTACAAGATAGTTG+AGG + chr7.2:19439579-19439598 MS.gene013970:CDS 35.0%
CAATATCAAGAAGTGGTCTA+CGG - chr7.2:19438845-19438864 None:intergenic 35.0%
CTTACTTCAATAACTTCCAC+AGG - chr7.2:19439226-19439245 None:intergenic 35.0%
CTTTCTTCTGAACAGGTTTA+GGG - chr7.2:19439186-19439205 None:intergenic 35.0%
GAAAACACAAACAAACCTCT+GGG - chr7.2:19438462-19438481 None:intergenic 35.0%
GAAATCTGTGCACAAGAAAA+AGG + chr7.2:19439270-19439289 MS.gene013970:CDS 35.0%
GGAAATGTTGTCACACTAAA+AGG + chr7.2:19438864-19438883 MS.gene013970:CDS 35.0%
TCAATGTCAACAATCTCCTT+TGG - chr7.2:19439505-19439524 None:intergenic 35.0%
TGAGAGGAATACTCATTGAT+TGG + chr7.2:19439761-19439780 MS.gene013970:CDS 35.0%
TGGTTTGACTAACAAACCAA+AGG + chr7.2:19439486-19439505 MS.gene013970:CDS 35.0%
TTTCTTCTGAACAGGTTTAG+GGG - chr7.2:19439185-19439204 None:intergenic 35.0%
! GAGTAAAATAGTTTCTGGGT+TGG + chr7.2:19438551-19438570 MS.gene013970:intron 35.0%
AAACGAACCAGGAACACAAA+AGG - chr7.2:19440066-19440085 None:intergenic 40.0%
AAGTACTCTGATCCTCAGAA+AGG + chr7.2:19440381-19440400 MS.gene013970:CDS 40.0%
AAGTCCATTCAAGCTTTCCT+AGG - chr7.2:19440029-19440048 None:intergenic 40.0%
ACAAAGTCATTAACCTCAGG+TGG - chr7.2:19439949-19439968 None:intergenic 40.0%
AGAAGGGAACTTCAATTGGT+TGG + chr7.2:19439880-19439899 MS.gene013970:CDS 40.0%
AGTCCATGTAATCATGTGGA+CGG - chr7.2:19439717-19439736 None:intergenic 40.0%
ATACTTTGATGCCATCAGCA+TGG - chr7.2:19439914-19439933 None:intergenic 40.0%
CACAAAAACTCCTTGTGACA+GGG - chr7.2:19438911-19438930 None:intergenic 40.0%
CACAACCTGAGATAAATGAG+AGG + chr7.2:19439737-19439756 MS.gene013970:CDS 40.0%
CACACAAAGTCATTAACCTC+AGG - chr7.2:19439952-19439971 None:intergenic 40.0%
CGTAGACCACTTCTTGATAT+TGG + chr7.2:19438843-19438862 MS.gene013970:CDS 40.0%
CTCATCCTCTCATTTATCTC+AGG - chr7.2:19439745-19439764 None:intergenic 40.0%
GAAACAAGCTTGTGTCAATG+TGG + chr7.2:19439093-19439112 MS.gene013970:intron 40.0%
GAGATAAATGAGAGGATGAG+AGG + chr7.2:19439745-19439764 MS.gene013970:CDS 40.0%
GAGATTGTTGACATTGATGC+TGG + chr7.2:19439508-19439527 MS.gene013970:CDS 40.0%
GGGAAACAACAGAAGAAGAA+CGG + chr7.2:19438798-19438817 MS.gene013970:CDS 40.0%
GTCAAGAAGGGAACTTCAAT+TGG + chr7.2:19439876-19439895 MS.gene013970:CDS 40.0%
TCAATAACTTCCACAGGCTT+AGG - chr7.2:19439220-19439239 None:intergenic 40.0%
TCATGAACAGATTCTCGTCA+TGG + chr7.2:19439993-19440012 MS.gene013970:CDS 40.0%
TGTCAACCTTGTGTCAAGAA+GGG + chr7.2:19439864-19439883 MS.gene013970:CDS 40.0%
TGTGAGTCCATGTAATCATG+TGG - chr7.2:19439721-19439740 None:intergenic 40.0%
TTACTCCGAAGAACAGTTGA+TGG + chr7.2:19440290-19440309 MS.gene013970:CDS 40.0%
TTGAGTGTCTCATTCCAAAC+AGG - chr7.2:19440258-19440277 None:intergenic 40.0%
! AGGAATACTCATTGATTGGC+TGG + chr7.2:19439765-19439784 MS.gene013970:CDS 40.0%
! AGTGCGTGATGTTTTCTTCT+TGG - chr7.2:19439308-19439327 None:intergenic 40.0%
! GCTCATTTTCTCTCTGAGTT+GGG + chr7.2:19440144-19440163 MS.gene013970:CDS 40.0%
!! AACAGTTGATGGATTGTGCT+AGG + chr7.2:19440301-19440320 MS.gene013970:CDS 40.0%
!! CTAGAAGCAAGGTTTGTTGT+TGG + chr7.2:19439347-19439366 MS.gene013970:intron 40.0%
!! TTGTTGGTGAGTTTTCACTC+TGG + chr7.2:19440324-19440343 MS.gene013970:CDS 40.0%
AAACCTTGCTTCTAGCAGTG+AGG - chr7.2:19439342-19439361 None:intergenic 45.0%
AAGCCGTCCACATGATTACA+TGG + chr7.2:19439711-19439730 MS.gene013970:CDS 45.0%
CAACAACAACAACAACCCAG+AGG + chr7.2:19438444-19438463 MS.gene013970:CDS 45.0%
CAACTGTTCTTCGGAGTAAC+CGG - chr7.2:19440289-19440308 None:intergenic 45.0%
CACATGCAGCCTAAAAGAAC+AGG - chr7.2:19439468-19439487 None:intergenic 45.0%
CATTGAGCAAGACTCCTGTT+TGG + chr7.2:19440241-19440260 MS.gene013970:CDS 45.0%
CCATCCTAGGAAAGCTTGAA+TGG + chr7.2:19440022-19440041 MS.gene013970:CDS 45.0%
CCATTCAAGCTTTCCTAGGA+TGG - chr7.2:19440025-19440044 None:intergenic 45.0%
CTGCAGTTCCTTCTGATCAA+GGG + chr7.2:19440106-19440125 MS.gene013970:CDS 45.0%
CTGTCAACCTTGTGTCAAGA+AGG + chr7.2:19439863-19439882 MS.gene013970:CDS 45.0%
GAAGTTCCCTTCTTGACACA+AGG - chr7.2:19439873-19439892 None:intergenic 45.0%
GACTGTAAGCTCTATCTGAG+AGG - chr7.2:19439975-19439994 None:intergenic 45.0%
GAGACACTCAAGATGCATAC+CGG + chr7.2:19440267-19440286 MS.gene013970:CDS 45.0%
GCACAAAAACTCCTTGTGAC+AGG - chr7.2:19438912-19438931 None:intergenic 45.0%
GCAGTGACTTTCTTCTGAAC+AGG - chr7.2:19439193-19439212 None:intergenic 45.0%
GGTAGCAGAAGTTTCTTTGC+CGG - chr7.2:19440426-19440445 None:intergenic 45.0%
GTCATGGAGAAAACCATCCT+AGG + chr7.2:19440009-19440028 MS.gene013970:CDS 45.0%
GTTATAGGTGATGCTGCCTT+GGG + chr7.2:19438771-19438790 MS.gene013970:intron 45.0%
TCAAGGGGATTTCGAGATGA+TGG + chr7.2:19440122-19440141 MS.gene013970:CDS 45.0%
TCGAAATCCCCTTGATCAGA+AGG - chr7.2:19440117-19440136 None:intergenic 45.0%
TCTGCAGTTCCTTCTGATCA+AGG + chr7.2:19440105-19440124 MS.gene013970:CDS 45.0%
TGCAGTTCCTTCTGATCAAG+GGG + chr7.2:19440107-19440126 MS.gene013970:CDS 45.0%
TGCTGAGAATGGAAAGCTGA+AGG + chr7.2:19440347-19440366 MS.gene013970:CDS 45.0%
TGTTATAGGTGATGCTGCCT+TGG + chr7.2:19438770-19438789 MS.gene013970:intron 45.0%
TTGACACAAGGTTGACAGCA+AGG - chr7.2:19439861-19439880 None:intergenic 45.0%
! ACCAGGAACACAAAAGGTGT+CGG - chr7.2:19440060-19440079 None:intergenic 45.0%
! CTGTTCTTTTAGGCTGCATG+TGG + chr7.2:19439466-19439485 MS.gene013970:intron 45.0%
! GGCTCATTTTCTCTCTGAGT+TGG + chr7.2:19440143-19440162 MS.gene013970:CDS 45.0%
! GTTCCTGGTTCGTTTCATCA+AGG + chr7.2:19440071-19440090 MS.gene013970:CDS 45.0%
! TTTCACTCTGGTGCTGAGAA+TGG + chr7.2:19440336-19440355 MS.gene013970:CDS 45.0%
!! GATGGATTGTGCTAGGTTGT+TGG + chr7.2:19440308-19440327 MS.gene013970:CDS 45.0%
ACTCCATCAGCAACAACAGG+AGG - chr7.2:19439133-19439152 None:intergenic 50.0%
AGAAGAAGAACGGTGCAGCA+GGG + chr7.2:19438808-19438827 MS.gene013970:CDS 50.0%
AGCAGAAGTTTCTTTGCCGG+TGG - chr7.2:19440423-19440442 None:intergenic 50.0%
CACTGCAAAACCTAAGCCTG+TGG + chr7.2:19439207-19439226 MS.gene013970:CDS 50.0%
CAGCCTTGATGAAACGAACC+AGG - chr7.2:19440077-19440096 None:intergenic 50.0%
GCAACTCCATCAGCAACAAC+AGG - chr7.2:19439136-19439155 None:intergenic 50.0%
TGAAGAAATCTGGCCACCTG+AGG + chr7.2:19439933-19439952 MS.gene013970:CDS 50.0%
TGGAATCAGTGCCATGCTGA+TGG + chr7.2:19439900-19439919 MS.gene013970:CDS 50.0%
TGTCCTCACTGCTAGAAGCA+AGG + chr7.2:19439336-19439355 MS.gene013970:CDS 50.0%
! AACTGCTGCTGCTTGTGCAT+TGG - chr7.2:19438946-19438965 None:intergenic 50.0%
AGCAGTGGCTAGAAGAGTGG+TGG + chr7.2:19439156-19439175 MS.gene013970:CDS 55.0%
AGCCAAATCGCCCTGTCACA+AGG + chr7.2:19438898-19438917 MS.gene013970:CDS 55.0%
AGTGGCTAGAAGAGTGGTGG+TGG + chr7.2:19439159-19439178 MS.gene013970:CDS 55.0%
ATAGGTGATGCTGCCTTGGG+AGG + chr7.2:19438774-19438793 MS.gene013970:intron 55.0%
CAGAAGAAGAACGGTGCAGC+AGG + chr7.2:19438807-19438826 MS.gene013970:CDS 55.0%
CCTCAGCAGTCTATGCAGCA+AGG + chr7.2:19440214-19440233 MS.gene013970:CDS 55.0%
CCTTGCTGCATAGACTGCTG+AGG - chr7.2:19440217-19440236 None:intergenic 55.0%
CTCCTTGTGACAGGGCGATT+TGG - chr7.2:19438903-19438922 None:intergenic 55.0%
GAAGAAGAACGGTGCAGCAG+GGG + chr7.2:19438809-19438828 MS.gene013970:CDS 55.0%
GCTCCTCCTGTTGTTGCTGA+TGG + chr7.2:19439127-19439146 MS.gene013970:CDS 55.0%
GCTTGTGTCAATGTGGCACC+TGG + chr7.2:19439100-19439119 MS.gene013970:CDS 55.0%
TCAGCAACAACAGGAGGAGC+AGG - chr7.2:19439127-19439146 None:intergenic 55.0%
TGCAGCAGTGGCTAGAAGAG+TGG + chr7.2:19439153-19439172 MS.gene013970:CDS 55.0%
TGCTGATGGAGTTGCAGCAG+TGG + chr7.2:19439141-19439160 MS.gene013970:CDS 55.0%
TTTCTTTGCCGGTGGAAGCG+CGG - chr7.2:19440415-19440434 None:intergenic 55.0%
! GCCGACACCTTTTGTGTTCC+TGG + chr7.2:19440056-19440075 MS.gene013970:CDS 55.0%
!! CTGTTGTTTCCCTCCTCCCA+AGG - chr7.2:19438790-19438809 None:intergenic 55.0%
!! GCTGAGGCAGCAAGCATTGA+TGG - chr7.2:19440201-19440220 None:intergenic 55.0%
AAGAACGGTGCAGCAGGGGA+AGG + chr7.2:19438813-19438832 MS.gene013970:CDS 60.0%
ACAACAGGAGGAGCAGGTCC+AGG - chr7.2:19439121-19439140 None:intergenic 60.0%
GCGGCAACAGCACCTTTCTG+AGG - chr7.2:19440396-19440415 None:intergenic 60.0%
GTGATGCTGCCTTGGGAGGA+GGG + chr7.2:19438778-19438797 MS.gene013970:CDS 60.0%
ACGGTGCAGCAGGGGAAGGA+AGG + chr7.2:19438817-19438836 MS.gene013970:CDS 65.0%
GGTGATGCTGCCTTGGGAGG+AGG + chr7.2:19438777-19438796 MS.gene013970:intron 65.0%
TGCTGTTGCCGCGCTTCCAC+CGG + chr7.2:19440404-19440423 MS.gene013970:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 19438420 19440458 19438420 ID=MS.gene013970
chr7.2 mRNA 19438420 19440458 19438420 ID=MS.gene013970.t1;Parent=MS.gene013970
chr7.2 exon 19438420 19438465 19438420 ID=MS.gene013970.t1.exon1;Parent=MS.gene013970.t1
chr7.2 CDS 19438420 19438465 19438420 ID=cds.MS.gene013970.t1;Parent=MS.gene013970.t1
chr7.2 exon 19438778 19438980 19438778 ID=MS.gene013970.t1.exon2;Parent=MS.gene013970.t1
chr7.2 CDS 19438778 19438980 19438778 ID=cds.MS.gene013970.t1;Parent=MS.gene013970.t1
chr7.2 exon 19439094 19439357 19439094 ID=MS.gene013970.t1.exon3;Parent=MS.gene013970.t1
chr7.2 CDS 19439094 19439357 19439094 ID=cds.MS.gene013970.t1;Parent=MS.gene013970.t1
chr7.2 exon 19439478 19439600 19439478 ID=MS.gene013970.t1.exon4;Parent=MS.gene013970.t1
chr7.2 CDS 19439478 19439600 19439478 ID=cds.MS.gene013970.t1;Parent=MS.gene013970.t1
chr7.2 exon 19439706 19440458 19439706 ID=MS.gene013970.t1.exon5;Parent=MS.gene013970.t1
chr7.2 CDS 19439706 19440458 19439706 ID=cds.MS.gene013970.t1;Parent=MS.gene013970.t1
Gene Sequence

>MS.gene013970

ATGGCTTCAAGACCCATTGTTCAACAACAACAACAACAACCCAGAGGTTTGTTTGTGTTTTCTTCAATCATTGATTCTTTATGGTTTTATTTATCCTGGGTTCAATGTTTTTGTTCTAAGATTGAAACTTTGAGTAAAATAGTTTCTGGGTTGGTTTCTTTTTCATCTATCTATTCACTGATTGAAAGATCTTGCAAATCTGGGTTTTTGAAAGAAGCCCAGATGATAAATCTTAAAAAGTTTCGATTTTTTAGGGTTTTGCATCAAATCTAGTAAAAGGGTCTTGTTCTTTTTTGGATTTTGTGTTTGGATCGAAATCTAGAACCTGTTTTTGATGTTTGTTTGTGCAATGTTATAGGTGATGCTGCCTTGGGAGGAGGGAAACAACAGAAGAAGAACGGTGCAGCAGGGGAAGGAAGGAACCGTAGACCACTTCTTGATATTGGAAATGTTGTCACACTAAAAGGTGTCGAAGTTAAGCCAAATCGCCCTGTCACAAGGAGTTTTTGTGCACAATTACTTGCCAATGCACAAGCAGCAGCAGTTGCTGAAAACAATAAGGTTAGTGATGATTATTTGATTAATCTTTCTTTTCTTTCATTATTTAATTTAATGTTTCATTGTGATGATTATTTTCTGAGATTGGTTTTTTTGTGTTTGATTTGAAATTGAAGAAACAAGCTTGTGTCAATGTGGCACCTGGACCTGCTCCTCCTGTTGTTGCTGATGGAGTTGCAGCAGTGGCTAGAAGAGTGGTGGTGGCCCCTAAACCTGTTCAGAAGAAAGTCACTGCAAAACCTAAGCCTGTGGAAGTTATTGAAGTAAGTTCTGAAGAAAAGGACAATGAAGAGAAATCTGTGCACAAGAAAAAGGAAGAAGTTCATTCCAAGAAGAAAACATCACGCACTCTTTCTTCTGTCCTCACTGCTAGAAGCAAGGTTTGTTGTTGGTTATGTTGTTAAGAATTAATCAAACAAAGAAGCATGTTATGTTGTTAGATTGAATTCTCTTTTACATGTTCTTTGGTTTGTTTACATGTTCTTTTCCTGTTCTTTTAGGCTGCATGTGGTTTGACTAACAAACCAAAGGAGATTGTTGACATTGATGCTGGTGATGCTAACAATGAGTTAGCTGCTGTTGAATATCTTGAAGACATATACAAGTTCTACAAGATAGTTGAGGTAACAATAACAAACATGACTTTAATTTACTTTTCATTCTATATGTTTTTTATTTGTGTCTGATGTATTGTTCTTTATTGCTTGTGTATGTGTTGAATGATTCAGAATGAAAGCCGTCCACATGATTACATGGACTCACAACCTGAGATAAATGAGAGGATGAGAGGAATACTCATTGATTGGCTGGTAGATGTTCACTCAAAATTTGAACTTTCACCTGAAACCCTTTATCTCACAATCAACATAGTTGATAGGTTCCTTGCTGTCAACCTTGTGTCAAGAAGGGAACTTCAATTGGTTGGAATCAGTGCCATGCTGATGGCATCAAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTGTGCCTCTCAGATAGAGCTTACAGTCATGAACAGATTCTCGTCATGGAGAAAACCATCCTAGGAAAGCTTGAATGGACTTTGACTGTGCCGACACCTTTTGTGTTCCTGGTTCGTTTCATCAAGGCTGCATCAGTATCTGCAGTTCCTTCTGATCAAGGGGATTTCGAGATGATGGCTCATTTTCTCTCTGAGTTGGGAATGATGCATTATGCTACATTAAGGTATTGTCCATCAATGCTTGCTGCCTCAGCAGTCTATGCAGCAAGGAGCACATTGAGCAAGACTCCTGTTTGGAATGAGACACTCAAGATGCATACCGGTTACTCCGAAGAACAGTTGATGGATTGTGCTAGGTTGTTGGTGAGTTTTCACTCTGGTGCTGAGAATGGAAAGCTGAAGGTTGTGTATAAGAAGTACTCTGATCCTCAGAAAGGTGCTGTTGCCGCGCTTCCACCGGCAAAGAAACTTCTGCTACCTGCTGCTGTGTAG
Protein sequence

>MS.gene013970.t1

MASRPIVQQQQQQPRGDAALGGGKQQKKNGAAGEGRNRRPLLDIGNVVTLKGVEVKPNRPVTRSFCAQLLANAQAAAVAENNKKQACVNVAPGPAPPVVADGVAAVARRVVVAPKPVQKKVTAKPKPVEVIEVSSEEKDNEEKSVHKKKEEVHSKKKTSRTLSSVLTARSKAACGLTNKPKEIVDIDAGDANNELAAVEYLEDIYKFYKIVENESRPHDYMDSQPEINERMRGILIDWLVDVHSKFELSPETLYLTINIVDRFLAVNLVSRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYSHEQILVMEKTILGKLEWTLTVPTPFVFLVRFIKAASVSAVPSDQGDFEMMAHFLSELGMMHYATLRYCPSMLAASAVYAARSTLSKTPVWNETLKMHTGYSEEQLMDCARLLVSFHSGAENGKLKVVYKKYSDPQKGAVAALPPAKKLLLPAAV