AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00474


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00474.t1 MTR_1g018680 94.536 366 11 3 1 360 1 363 0.0 675
MS.gene00474.t1 MTR_3g102520 55.917 338 133 5 30 354 23 357 2.94e-126 367
MS.gene00474.t1 MTR_3g102530 54.755 347 145 4 16 353 6 349 6.16e-123 358
MS.gene00474.t1 MTR_3g102510 53.988 326 139 5 30 354 23 338 2.79e-116 341
MS.gene00474.t1 MTR_3g102560 53.824 340 137 5 14 353 5 324 2.71e-115 338
MS.gene00474.t1 MTR_3g088415 53.597 278 124 3 78 354 231 504 2.12e-104 316
MS.gene00474.t1 MTR_3g102540 55.039 258 109 2 91 348 13 263 6.67e-97 289
MS.gene00474.t1 MTR_3g088405 49.281 278 136 3 79 354 235 509 2.47e-94 290
MS.gene00474.t1 MTR_3g107970 51.273 275 131 2 76 350 202 473 1.32e-92 285
MS.gene00474.t1 MTR_2g102520 51.111 270 127 3 78 345 206 472 3.43e-92 284
MS.gene00474.t1 MTR_1g011470 50.368 272 131 3 77 347 151 419 3.75e-89 275
MS.gene00474.t1 MTR_2g102550 47.273 275 142 2 71 345 151 422 2.01e-87 270
MS.gene00474.t1 MTR_3g088415 57.944 214 85 3 78 290 231 440 2.84e-84 263
MS.gene00474.t1 MTR_3g088415 59.064 171 66 2 78 248 231 397 6.14e-67 216
MS.gene00474.t1 MTR_7g089080 39.689 257 150 4 87 343 199 450 8.00e-54 191
MS.gene00474.t1 MTR_5g088980 38.211 246 141 5 87 331 165 400 1.84e-49 171
MS.gene00474.t1 MTR_8g074000 35.827 254 153 4 87 340 176 419 5.54e-49 171
MS.gene00474.t1 MTR_5g023790 36.015 261 157 4 80 340 165 415 7.51e-48 167
MS.gene00474.t1 MTR_5g023790 39.801 201 112 3 80 280 165 356 1.16e-43 155
MS.gene00474.t1 MTR_5g023790 42.105 152 85 2 80 231 165 313 3.03e-35 132
MS.gene00474.t1 MTR_3g060410 33.333 231 141 6 118 340 131 356 3.27e-25 105
MS.gene00474.t1 MTR_3g060770 33.937 221 129 6 118 333 56 264 8.73e-23 97.1
MS.gene00474.t1 MTR_3g061680 36.224 196 115 5 118 308 46 236 4.96e-22 94.7
MS.gene00474.t1 MTR_3g060820 35.714 196 116 5 118 308 46 236 5.38e-22 94.7
MS.gene00474.t1 MTR_3g060400 32.035 231 144 6 118 340 52 277 1.14e-21 94.0
MS.gene00474.t1 MTR_3g460990 32.035 231 144 6 118 340 52 277 1.14e-21 94.0
MS.gene00474.t1 MTR_5g044040 46.667 75 40 0 144 218 7 81 8.18e-19 82.0
MS.gene00474.t1 MTR_1g032850 30.366 191 120 6 123 309 372 553 3.98e-15 77.0
MS.gene00474.t1 MTR_1g107535 29.412 204 105 8 85 277 88 263 6.88e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00474.t1 AT5G43080 59.714 350 134 4 7 354 7 351 2.44e-146 418
MS.gene00474.t1 AT1G47230 58.172 361 133 6 7 354 6 361 7.57e-144 412
MS.gene00474.t1 AT5G43080 58.857 350 132 5 7 354 7 346 2.75e-142 407
MS.gene00474.t1 AT1G47230 58.011 362 133 7 7 354 6 362 4.12e-142 407
MS.gene00474.t1 AT1G47210 56.303 357 135 5 16 354 15 368 1.83e-137 396
MS.gene00474.t1 AT1G47220 56.711 298 120 2 57 354 34 322 1.87e-116 341
MS.gene00474.t1 AT1G44110 54.545 275 120 3 80 353 187 457 3.21e-102 309
MS.gene00474.t1 AT5G25380 50.719 278 126 3 79 352 165 435 7.36e-97 295
MS.gene00474.t1 AT5G25380 50.719 278 126 3 79 352 165 435 7.36e-97 295
MS.gene00474.t1 AT5G25380 50.719 278 126 3 79 352 171 441 1.27e-96 294
MS.gene00474.t1 AT5G11300 44.602 352 181 6 10 352 88 434 4.80e-95 290
MS.gene00474.t1 AT1G80370 53.053 262 120 2 79 340 189 447 1.53e-92 285
MS.gene00474.t1 AT1G15570 52.060 267 125 2 79 345 180 443 6.39e-92 282
MS.gene00474.t1 AT5G25380 50.958 261 117 3 79 335 165 418 1.22e-91 281
MS.gene00474.t1 AT1G77390 48.175 274 139 2 80 353 171 441 2.32e-88 273
MS.gene00474.t1 AT5G11300 43.289 298 158 5 4 295 85 377 1.47e-76 242
MS.gene00474.t1 AT3G11520 36.145 332 192 7 17 340 82 401 2.36e-51 176
MS.gene00474.t1 AT3G11520 38.047 297 164 7 17 305 82 366 6.85e-50 172
MS.gene00474.t1 AT5G06150 37.970 266 151 6 87 351 182 434 2.58e-49 172
MS.gene00474.t1 AT2G26760 37.970 266 154 5 87 351 130 385 4.08e-46 162
MS.gene00474.t1 AT1G20610 34.211 266 164 5 80 345 170 424 1.30e-45 161
MS.gene00474.t1 AT1G47210 49.444 180 71 4 16 177 15 192 1.31e-45 155
MS.gene00474.t1 AT4G37490 37.262 263 148 8 87 343 165 416 1.52e-44 159
MS.gene00474.t1 AT1G76310 34.902 255 155 5 87 340 177 421 2.09e-43 155
MS.gene00474.t1 AT2G17620 37.354 257 145 5 87 340 171 414 2.31e-42 153
MS.gene00474.t1 AT1G16330 33.457 269 166 5 66 331 371 629 9.31e-42 154
MS.gene00474.t1 AT4G35620 38.039 255 148 5 87 341 172 416 1.50e-41 150
MS.gene00474.t1 AT1G76310 37.879 198 113 4 87 283 177 365 1.53e-39 144
MS.gene00474.t1 AT1G76310 31.802 283 154 6 87 340 177 449 8.58e-38 141
MS.gene00474.t1 AT4G35620 40.580 207 113 5 87 293 172 368 1.09e-36 137
MS.gene00474.t1 AT5G06150 43.448 145 78 1 87 231 182 322 1.14e-35 133
MS.gene00474.t1 AT1G76310 41.781 146 81 3 87 231 177 319 1.47e-32 124
MS.gene00474.t1 AT1G20590 34.463 177 105 3 151 323 66 235 7.74e-25 102
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 272 392 1.99e-17 84.0
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 272 392 2.17e-17 83.6
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 272 392 2.26e-17 83.6
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 272 392 2.26e-17 83.6
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 272 392 2.26e-17 83.6
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 272 392 2.26e-17 83.6
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 269 389 2.43e-17 83.6
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 269 389 2.43e-17 83.6
MS.gene00474.t1 AT1G34460 33.103 145 73 2 87 231 258 378 2.55e-17 83.6
MS.gene00474.t1 AT1G14750 28.736 261 166 9 65 319 163 409 1.10e-14 75.1
MS.gene00474.t1 AT1G14750 27.969 261 169 8 65 319 163 410 1.20e-14 75.1
MS.gene00474.t1 AT1G14750 30.348 201 129 6 122 319 386 578 1.58e-14 75.1
MS.gene00474.t1 AT1G14750 30.366 191 123 5 122 309 386 569 6.13e-14 73.6
MS.gene00474.t1 AT1G70210 30.726 179 111 5 106 276 64 237 8.33e-11 63.2

Find 70 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGAAGTTCTTGCCTTCTA+TGG 0.257368 1.4:-4569433 MS.gene00474:CDS
CGCGTGGGGTTAACGCTCTT+TGG 0.262421 1.4:+4571523 None:intergenic
CTTAGGAATGTCTTTATTGT+AGG 0.290255 1.4:+4570339 None:intergenic
CCTTGCTGAGCTCAGTTTGT+TGG 0.292382 1.4:-4569466 MS.gene00474:CDS
AACTCCGGTACCGGAGAAAT+TGG 0.300734 1.4:-4571326 MS.gene00474:CDS
CAAGTCTGCAGGTTTATATC+TGG 0.333404 1.4:+4569249 None:intergenic
GAAGTCATTGAAGTTTGAAT+TGG 0.360491 1.4:-4570367 MS.gene00474:CDS
GGGATGTTAACGCGAGTATG+AGG 0.393481 1.4:-4571068 MS.gene00474:CDS
ATATAAACCTGCAGACTTGA+AGG 0.399847 1.4:-4569245 MS.gene00474:CDS
GGGTGTTCTTGTGGATTGGT+TGG 0.400845 1.4:-4571046 MS.gene00474:CDS
ACTGATGCAGCCACCATAGA+AGG 0.402548 1.4:+4569420 None:intergenic
TTCTCCAATTTCTCCGGTAC+CGG 0.411453 1.4:+4571322 None:intergenic
ATATCTGGTGAATTCATAGA+TGG 0.420121 1.4:+4569264 None:intergenic
TTACCCAAGGATGAGTCTTC+GGG 0.425884 1.4:+4569370 None:intergenic
ATTACCCAAGGATGAGTCTT+CGG 0.430153 1.4:+4569369 None:intergenic
TTTAGGTTGATTCTAGTAAG+AGG 0.436695 1.4:-4571122 MS.gene00474:intron
TCACGTTGAGGGCGGCGCGT+GGG 0.441478 1.4:+4571508 None:intergenic
TACAAGATTCACCTCTTCCT+TGG 0.443619 1.4:+4570510 None:intergenic
CTCCGGTACCGGAGTTTCAT+CGG 0.445846 1.4:+4571333 None:intergenic
TCGAATTTCTCCAATTTCTC+CGG 0.446675 1.4:+4571316 None:intergenic
TGAGGGGTGTTCTTGTGGAT+TGG 0.457804 1.4:-4571050 MS.gene00474:CDS
AGAAGATTCATCACTAAAGT+TGG 0.459150 1.4:-4570223 MS.gene00474:CDS
ACACATTCCTTCAAGTCTGC+AGG 0.460260 1.4:+4569238 None:intergenic
CTCCGATGAAACTCCGGTAC+CGG 0.462507 1.4:-4571335 MS.gene00474:CDS
TTTCGGTTTCTTATATTGAT+CGG 0.465083 1.4:-4570978 MS.gene00474:CDS
AAGTCATTGAAGTTTGAATT+GGG 0.468127 1.4:-4570366 MS.gene00474:CDS
CACGTTGAGGGCGGCGCGTG+GGG 0.493799 1.4:+4571509 None:intergenic
GATTAAGCCACCTGAGGTTG+AGG 0.495688 1.4:-4570563 MS.gene00474:CDS
AGATAAATACAAACAGCATA+AGG 0.498310 1.4:-4569158 MS.gene00474:intron
AATATACATGACTTGTACCT+TGG 0.507114 1.4:-4569211 MS.gene00474:CDS
TTGTTCACATAGTGCAGCTA+CGG 0.511501 1.4:+4571471 None:intergenic
TTCACGTTGAGGGCGGCGCG+TGG 0.513771 1.4:+4571507 None:intergenic
GGCAACAACACCCTCTCCCC+CGG 0.520065 1.4:-4568967 MS.gene00474:CDS
CTTCAAAATATCAGCCTCCA+TGG 0.525850 1.4:+4570386 None:intergenic
GAGTATGAGGGGTGTTCTTG+TGG 0.531293 1.4:-4571055 MS.gene00474:CDS
ATCACTAAAGTTGGTCTAGA+GGG 0.532834 1.4:-4570214 MS.gene00474:CDS
AAGCCCGAAGACTCATCCTT+GGG 0.535304 1.4:-4569373 MS.gene00474:intron
TAACAAAAGTCCTCAACCTC+AGG 0.540151 1.4:+4570553 None:intergenic
GAAGTTCTTGCCTTCTATGG+TGG 0.548750 1.4:-4569430 MS.gene00474:CDS
TAAGCCCGAAGACTCATCCT+TGG 0.550073 1.4:-4569374 MS.gene00474:CDS
GGATGTTAACGCGAGTATGA+GGG 0.553144 1.4:-4571067 MS.gene00474:CDS
ACTCGGTGTTGCTTCGATGT+TGG 0.553532 1.4:-4570914 MS.gene00474:CDS
ATCAAACTCCGATGAAACTC+CGG 0.553690 1.4:-4571341 MS.gene00474:CDS
ATTATATACAGAAAGTTCAA+AGG 0.558828 1.4:-4571089 MS.gene00474:CDS
TTATATACAGAAAGTTCAAA+GGG 0.568073 1.4:-4571088 MS.gene00474:CDS
TTACGATTATCTTCGTAACA+TGG 0.581267 1.4:-4571257 MS.gene00474:CDS
GACTTGTACCTTGGTAGGAA+AGG 0.582896 1.4:-4569202 MS.gene00474:CDS
CAATACATACTCCAAGGAAG+AGG 0.589667 1.4:-4570521 MS.gene00474:intron
AAACGAAAACGTGTTCCTCT+CGG 0.594016 1.4:-4571442 MS.gene00474:CDS
CATCACTAAAGTTGGTCTAG+AGG 0.599941 1.4:-4570215 MS.gene00474:CDS
GCTCAGCAAGGTAAGAGCAA+AGG 0.603798 1.4:+4569478 None:intergenic
TTGGTCACAGTTCAAATGCG+TGG 0.611335 1.4:-4568988 MS.gene00474:intron
TACATGACTTGTACCTTGGT+AGG 0.612523 1.4:-4569207 MS.gene00474:CDS
CTACAATAAAGACATTCCTA+AGG 0.613211 1.4:-4570338 MS.gene00474:intron
CAAAAGTCCTCAACCTCAGG+TGG 0.618973 1.4:+4570556 None:intergenic
AGACAGAAGTTACAATTACT+CGG 0.626618 1.4:-4570931 MS.gene00474:CDS
TCATTGAAGTTTGAATTGGG+TGG 0.631240 1.4:-4570363 MS.gene00474:CDS
GATGTTAACGCGAGTATGAG+GGG 0.631509 1.4:-4571066 MS.gene00474:CDS
TCTTTGCTTCACGTTGAGGG+CGG 0.632157 1.4:+4571500 None:intergenic
TACGGACAATACATACTCCA+AGG 0.633308 1.4:-4570527 MS.gene00474:CDS
TTGTACCTTGGTAGGAAAGG+CGG 0.635313 1.4:-4569199 MS.gene00474:CDS
CGATTATCTTCGTAACATGG+AGG 0.645441 1.4:-4571254 MS.gene00474:intron
AAGAGCCGCCTTTCCTACCA+AGG 0.647189 1.4:+4569194 None:intergenic
CCAACAAACTGAGCTCAGCA+AGG 0.668066 1.4:+4569466 None:intergenic
TCGTTTGTTATTTCACCGAG+AGG 0.670866 1.4:+4571427 None:intergenic
TTCTGTATATAATCACACAA+TGG 0.674639 1.4:+4571099 None:intergenic
AAAGAAAGAGATATCTCCGG+GGG 0.686776 1.4:+4568951 None:intergenic
TGAAGAGATTAAGCCACCTG+AGG 0.697941 1.4:-4570569 MS.gene00474:CDS
ACATAAGTTTCACATAACTG+AGG 0.720028 1.4:+4571289 None:intergenic
AAAAGAAAGAGATATCTCCG+GGG 0.745816 1.4:+4568950 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGATTTTTTATTTGTTT+TGG - chr1.4:4569848-4569867 MS.gene00474:intron 10.0%
!! TATTCTTAAAAAAGTTAGTA+AGG + chr1.4:4570663-4570682 None:intergenic 15.0%
!! TTAACTTCAAATTTCAATTA+GGG - chr1.4:4569239-4569258 MS.gene00474:CDS 15.0%
!!! TTTAACTTCAAATTTCAATT+AGG - chr1.4:4569238-4569257 MS.gene00474:CDS 15.0%
!!! TTTCTTTTTTTGAATTTAGA+GGG - chr1.4:4571517-4571536 MS.gene00474:CDS 15.0%
!!! TTTTGTTTTTGTTTGTTTTT+AGG - chr1.4:4569313-4569332 MS.gene00474:intron 15.0%
!! ATTATATACAGAAAGTTCAA+AGG - chr1.4:4569363-4569382 MS.gene00474:intron 20.0%
!! CACATTTGACAAAAAATTTA+GGG + chr1.4:4570723-4570742 None:intergenic 20.0%
!! TAAACAATAAAATCACATCT+TGG + chr1.4:4569813-4569832 None:intergenic 20.0%
!! TGATGAATAAATACCTAATT+TGG - chr1.4:4569611-4569630 MS.gene00474:intron 20.0%
!! TTATATACAGAAAGTTCAAA+GGG - chr1.4:4569364-4569383 MS.gene00474:intron 20.0%
!!! AAATAGTATCATCTAAGATA+GGG - chr1.4:4570432-4570451 MS.gene00474:intron 20.0%
!!! AGTTTGAAATCAATTTTACT+TGG - chr1.4:4570824-4570843 MS.gene00474:intron 20.0%
!!! CTTTCTTTTTTTGAATTTAG+AGG - chr1.4:4571516-4571535 MS.gene00474:CDS 20.0%
!!! TAAAATTGATTTCAAACTTC+TGG + chr1.4:4570822-4570841 None:intergenic 20.0%
!!! TTAAGTTTGTTTGGTAAAAA+AGG + chr1.4:4571347-4571366 None:intergenic 20.0%
!!! TTCTTTTTTTGAATTTAGAG+GGG - chr1.4:4571518-4571537 MS.gene00474:CDS 20.0%
!!! TTGGTATTTTGTTTGATTAA+AGG - chr1.4:4570037-4570056 MS.gene00474:intron 20.0%
! AAAAAAGAAAGAGATATCTC+CGG + chr1.4:4571507-4571526 None:intergenic 25.0%
! AAATAGAAAGAGAATTAGAG+TGG - chr1.4:4570488-4570507 MS.gene00474:intron 25.0%
! AAATGGGTCAAAATTAATAG+AGG + chr1.4:4569718-4569737 None:intergenic 25.0%
! AAGAGTAATCTCTGTTAAAA+TGG + chr1.4:4569735-4569754 None:intergenic 25.0%
! AAGTCATTGAAGTTTGAATT+GGG - chr1.4:4570086-4570105 MS.gene00474:intron 25.0%
! AATAGAAAGAGAATTAGAGT+GGG - chr1.4:4570489-4570508 MS.gene00474:intron 25.0%
! AATTAAAATAACACTCGCAT+TGG - chr1.4:4569658-4569677 MS.gene00474:intron 25.0%
! ACTCAATTGTTTAAAAAGCT+TGG + chr1.4:4571386-4571405 None:intergenic 25.0%
! AGAGTAATCTCTGTTAAAAT+GGG + chr1.4:4569734-4569753 None:intergenic 25.0%
! AGATAAATACAAACAGCATA+AGG - chr1.4:4571294-4571313 MS.gene00474:CDS 25.0%
! ATGTTTCTTTGTATGTTGAA+TGG - chr1.4:4570156-4570175 MS.gene00474:intron 25.0%
! ATTACTCTTATGAAAATGTC+AGG - chr1.4:4569746-4569765 MS.gene00474:intron 25.0%
! ATTCGTGTACAATCTATATT+TGG - chr1.4:4571112-4571131 MS.gene00474:CDS 25.0%
! CCACATTTGACAAAAAATTT+AGG + chr1.4:4570724-4570743 None:intergenic 25.0%
! CTCAATTGTTTAAAAAGCTT+GGG + chr1.4:4571385-4571404 None:intergenic 25.0%
! TTCTGTATATAATCACACAA+TGG + chr1.4:4569356-4569375 None:intergenic 25.0%
! TTTATTACTCAAAATGTTGC+AGG - chr1.4:4570854-4570873 MS.gene00474:intron 25.0%
! TTTCGGTTTCTTATATTGAT+CGG - chr1.4:4569474-4569493 MS.gene00474:CDS 25.0%
!! CAAATAGTATCATCTAAGAT+AGG - chr1.4:4570431-4570450 MS.gene00474:intron 25.0%
!! TAGGACAAATTAAGTTTGTT+TGG + chr1.4:4571356-4571375 None:intergenic 25.0%
!! TCAAATTTCAATTAGGGTTT+TGG - chr1.4:4569245-4569264 MS.gene00474:CDS 25.0%
!!! ATGCGAGTGTTATTTTAATT+TGG + chr1.4:4569658-4569677 None:intergenic 25.0%
!!! CCTAAATTTTTTGTCAAATG+TGG - chr1.4:4570721-4570740 MS.gene00474:intron 25.0%
!!! TGCGAGTGTTATTTTAATTT+GGG + chr1.4:4569657-4569676 None:intergenic 25.0%
!!! TTTCACAAAGAAAGTATCTT+TGG - chr1.4:4570764-4570783 MS.gene00474:intron 25.0%
AAAAAGAAAGAGATATCTCC+GGG + chr1.4:4571506-4571525 None:intergenic 30.0%
AAAAAGTTAGTAAGGTTGCA+TGG + chr1.4:4570655-4570674 None:intergenic 30.0%
AAAAGTTAGTAAGGTTGCAT+GGG + chr1.4:4570654-4570673 None:intergenic 30.0%
AACCGAAAAATAAAGCGTAT+CGG + chr1.4:4569462-4569481 None:intergenic 30.0%
AACCTATAACTACTATGAGA+TGG + chr1.4:4570293-4570312 None:intergenic 30.0%
AATTTGGGTGCAAACAAATT+GGG + chr1.4:4569642-4569661 None:intergenic 30.0%
ACATAAGTTTCACATAACTG+AGG + chr1.4:4569166-4569185 None:intergenic 30.0%
ACCTATAACTACTATGAGAT+GGG + chr1.4:4570292-4570311 None:intergenic 30.0%
ACGAATTAAAACATTACCCA+AGG + chr1.4:4571098-4571117 None:intergenic 30.0%
AGAAGATTCATCACTAAAGT+TGG - chr1.4:4570229-4570248 MS.gene00474:intron 30.0%
AGACAGAAGTTACAATTACT+CGG - chr1.4:4569521-4569540 MS.gene00474:intron 30.0%
AGATACTTTCTTTGTGAAAG+TGG + chr1.4:4570763-4570782 None:intergenic 30.0%
AGTAGTTATAGGTTATGACA+TGG - chr1.4:4570299-4570318 MS.gene00474:intron 30.0%
ATATCTGGTGAATTCATAGA+TGG + chr1.4:4571191-4571210 None:intergenic 30.0%
CAGGAATTAATCTGGTATAT+TGG - chr1.4:4569765-4569784 MS.gene00474:intron 30.0%
CTACAATAAAGACATTCCTA+AGG - chr1.4:4570114-4570133 MS.gene00474:intron 30.0%
CTTAGGAATGTCTTTATTGT+AGG + chr1.4:4570116-4570135 None:intergenic 30.0%
GAAAATGTCAGGAATTAATC+TGG - chr1.4:4569757-4569776 MS.gene00474:intron 30.0%
GAAGTCATTGAAGTTTGAAT+TGG - chr1.4:4570085-4570104 MS.gene00474:intron 30.0%
TAATTTGGGTGCAAACAAAT+TGG + chr1.4:4569643-4569662 None:intergenic 30.0%
TATAGGTTATGACATGGATT+CGG - chr1.4:4570305-4570324 MS.gene00474:intron 30.0%
TATTGAATGAACTATCCAGA+AGG + chr1.4:4570583-4570602 None:intergenic 30.0%
TGGACTATAAACAAATTGTG+AGG - chr1.4:4569785-4569804 MS.gene00474:intron 30.0%
TTACGATTATCTTCGTAACA+TGG - chr1.4:4569195-4569214 MS.gene00474:CDS 30.0%
TTTGTTGCATTCTATAATGG+TGG - chr1.4:4569681-4569700 MS.gene00474:intron 30.0%
! AATATACATGACTTGTACCT+TGG - chr1.4:4571241-4571260 MS.gene00474:intron 30.0%
! ATAGTTGAACTTTGAGCTTT+TGG - chr1.4:4570534-4570553 MS.gene00474:CDS 30.0%
! ATGTTCAACTTTTAGTAGTG+TGG - chr1.4:4570343-4570362 MS.gene00474:CDS 30.0%
! GATTTTGGATGGTATTGTTT+TGG - chr1.4:4570018-4570037 MS.gene00474:intron 30.0%
! TACTTTTATCTCTTTTGTGC+AGG - chr1.4:4570929-4570948 MS.gene00474:CDS 30.0%
! TAGTTGAACTTTGAGCTTTT+GGG - chr1.4:4570535-4570554 MS.gene00474:CDS 30.0%
! TGAGGACTTTTGTTACATTA+CGG - chr1.4:4569907-4569926 MS.gene00474:intron 30.0%
! TGTGTTGTTGAATGTTTGTT+TGG - chr1.4:4569981-4570000 MS.gene00474:intron 30.0%
! TGTTCAACTTTTAGTAGTGT+GGG - chr1.4:4570344-4570363 MS.gene00474:CDS 30.0%
!! AAACTTAATTTGTCCTACCT+TGG - chr1.4:4571359-4571378 MS.gene00474:CDS 30.0%
!! GTTGAATGTTTGTTTGGTTT+TGG - chr1.4:4569987-4570006 MS.gene00474:intron 30.0%
!! TGGTTTGTTGCATTCTATAA+TGG - chr1.4:4569678-4569697 MS.gene00474:intron 30.0%
!! TTGATTAAAGGTTTTGACCA+TGG - chr1.4:4570049-4570068 MS.gene00474:intron 30.0%
!! TTTAGGTTGATTCTAGTAAG+AGG - chr1.4:4569330-4569349 MS.gene00474:intron 30.0%
!!! GTTTTGGTTTTCCCTAATTT+GGG - chr1.4:4569261-4569280 MS.gene00474:CDS 30.0%
!!! TTCCGATACGCTTTATTTTT+CGG - chr1.4:4569457-4569476 MS.gene00474:CDS 30.0%
!!! TTTTGGTTTTCCCTAATTTG+GGG - chr1.4:4569262-4569281 MS.gene00474:CDS 30.0%
AAAAGAAAGAGATATCTCCG+GGG + chr1.4:4571505-4571524 None:intergenic 35.0%
AAGCAAAAAGCCCCAAATTA+GGG + chr1.4:4569275-4569294 None:intergenic 35.0%
ACCCATCTCATAGTAGTTAT+AGG - chr1.4:4570288-4570307 MS.gene00474:intron 35.0%
ACTGTGACCAAAACAACAAA+TGG + chr1.4:4571455-4571474 None:intergenic 35.0%
ATATAAACCTGCAGACTTGA+AGG - chr1.4:4571207-4571226 MS.gene00474:intron 35.0%
CAATAAAACACACATGCCTT+AGG + chr1.4:4570133-4570152 None:intergenic 35.0%
GGCTGAATTCTGTAATCAAA+TGG + chr1.4:4571170-4571189 None:intergenic 35.0%
TAAGCAAAAAGCCCCAAATT+AGG + chr1.4:4569276-4569295 None:intergenic 35.0%
TCATTGAAGTTTGAATTGGG+TGG - chr1.4:4570089-4570108 MS.gene00474:intron 35.0%
TCGAATTTCTCCAATTTCTC+CGG + chr1.4:4569139-4569158 None:intergenic 35.0%
! ATCACTAAAGTTGGTCTAGA+GGG - chr1.4:4570238-4570257 MS.gene00474:intron 35.0%
! GGGGCTTTTTGCTTAATTTA+GGG - chr1.4:4569281-4569300 MS.gene00474:intron 35.0%
! GTTAGTCTGCAGAACAAAAT+AGG + chr1.4:4570627-4570646 None:intergenic 35.0%
! TGGGGCTTTTTGCTTAATTT+AGG - chr1.4:4569280-4569299 MS.gene00474:intron 35.0%
! TTTTAGTAGTGTGGGACTTT+TGG - chr1.4:4570352-4570371 MS.gene00474:CDS 35.0%
! TTTTCTTTGCTTCACGTTGA+GGG + chr1.4:4568958-4568977 None:intergenic 35.0%
! TTTTTCTTTGCTTCACGTTG+AGG + chr1.4:4568959-4568978 None:intergenic 35.0%
!! ATTAAAGGTTTTGACCATGG+AGG - chr1.4:4570052-4570071 MS.gene00474:intron 35.0%
!! GTATCTTTGGTTTGTGCTAT+AGG - chr1.4:4570777-4570796 MS.gene00474:intron 35.0%
!!! GCTGATTCCATTTGTTGTTT+TGG - chr1.4:4571445-4571464 MS.gene00474:CDS 35.0%
!!! GGTTTTGGTTTTCCCTAATT+TGG - chr1.4:4569260-4569279 MS.gene00474:CDS 35.0%
!!! GTTTTGGATCTTGCTGATTT+TGG - chr1.4:4570003-4570022 MS.gene00474:intron 35.0%
AAACGAAAACGTGTTCCTCT+CGG - chr1.4:4569010-4569029 MS.gene00474:intron 40.0%
AAAGAAAGAGATATCTCCGG+GGG + chr1.4:4571504-4571523 None:intergenic 40.0%
AAAGTGGCTACTAGCTAGAT+TGG + chr1.4:4570747-4570766 None:intergenic 40.0%
AAATTGGGAGGGACCAAATT+AGG + chr1.4:4569627-4569646 None:intergenic 40.0%
ATCAAACTCCGATGAAACTC+CGG - chr1.4:4569111-4569130 MS.gene00474:intron 40.0%
ATTACCCAAGGATGAGTCTT+CGG + chr1.4:4571086-4571105 None:intergenic 40.0%
CAAACCAAAGTCTCCAGATT+TGG + chr1.4:4570904-4570923 None:intergenic 40.0%
CAAGTCTGCAGGTTTATATC+TGG + chr1.4:4571206-4571225 None:intergenic 40.0%
CAATACATACTCCAAGGAAG+AGG - chr1.4:4569931-4569950 MS.gene00474:intron 40.0%
CCAGATTTGGCACACATAAA+CGG + chr1.4:4570891-4570910 None:intergenic 40.0%
CGATTATCTTCGTAACATGG+AGG - chr1.4:4569198-4569217 MS.gene00474:CDS 40.0%
CTTCAAAATATCAGCCTCCA+TGG + chr1.4:4570069-4570088 None:intergenic 40.0%
TAACAAAAGTCCTCAACCTC+AGG + chr1.4:4569902-4569921 None:intergenic 40.0%
TACAAGATTCACCTCTTCCT+TGG + chr1.4:4569945-4569964 None:intergenic 40.0%
TACGGACAATACATACTCCA+AGG - chr1.4:4569925-4569944 MS.gene00474:intron 40.0%
TGGCACACATAAACGGAAAT+GGG + chr1.4:4570884-4570903 None:intergenic 40.0%
TGTGAAGTTCTTGCCTTCTA+TGG - chr1.4:4571019-4571038 MS.gene00474:CDS 40.0%
TGTTTAAAAAGCTTGGGCCA+AGG + chr1.4:4571379-4571398 None:intergenic 40.0%
TTGGCACACATAAACGGAAA+TGG + chr1.4:4570885-4570904 None:intergenic 40.0%
TTGTTCACATAGTGCAGCTA+CGG + chr1.4:4568984-4569003 None:intergenic 40.0%
! CATCACTAAAGTTGGTCTAG+AGG - chr1.4:4570237-4570256 MS.gene00474:intron 40.0%
! TACATGACTTGTACCTTGGT+AGG - chr1.4:4571245-4571264 MS.gene00474:intron 40.0%
! TTGAACTTTGAGCTTTTGGG+AGG - chr1.4:4570538-4570557 MS.gene00474:CDS 40.0%
!! GTGGGTTTTGTCATGTCATT+TGG - chr1.4:4570507-4570526 MS.gene00474:intron 40.0%
!! TCGTTTGTTATTTCACCGAG+AGG + chr1.4:4569028-4569047 None:intergenic 40.0%
!! TGAACTTTGAGCTTTTGGGA+GGG - chr1.4:4570539-4570558 MS.gene00474:CDS 40.0%
!!! ACGTTTCGTTTTTTCTGCGT+TGG + chr1.4:4569082-4569101 None:intergenic 40.0%
!!! TGGATCTTGCTGATTTTGGA+TGG - chr1.4:4570007-4570026 MS.gene00474:intron 40.0%
ACACATTCCTTCAAGTCTGC+AGG + chr1.4:4571217-4571236 None:intergenic 45.0%
AGGATTGACAATAAGCGTGC+AGG + chr1.4:4571327-4571346 None:intergenic 45.0%
CCGTTTATGTGTGCCAAATC+TGG - chr1.4:4570888-4570907 MS.gene00474:intron 45.0%
GAAGTTCTTGCCTTCTATGG+TGG - chr1.4:4571022-4571041 MS.gene00474:CDS 45.0%
GACTTGTACCTTGGTAGGAA+AGG - chr1.4:4571250-4571269 MS.gene00474:intron 45.0%
GAGATGGGAATTGAACCTTC+TGG - chr1.4:4570565-4570584 MS.gene00474:CDS 45.0%
GATGTTAACGCGAGTATGAG+GGG - chr1.4:4569386-4569405 MS.gene00474:CDS 45.0%
GGATGTTAACGCGAGTATGA+GGG - chr1.4:4569385-4569404 MS.gene00474:CDS 45.0%
TAAAAAGCTTGGGCCAAGGT+AGG + chr1.4:4571375-4571394 None:intergenic 45.0%
TGAAGAGATTAAGCCACCTG+AGG - chr1.4:4569883-4569902 MS.gene00474:intron 45.0%
TGGGTGCAAACAAATTGGGA+GGG + chr1.4:4569638-4569657 None:intergenic 45.0%
TGTGCCAAATCTGGAGACTT+TGG - chr1.4:4570897-4570916 MS.gene00474:intron 45.0%
TTACCCAAGGATGAGTCTTC+GGG + chr1.4:4571085-4571104 None:intergenic 45.0%
TTCTCCAATTTCTCCGGTAC+CGG + chr1.4:4569133-4569152 None:intergenic 45.0%
TTGGGTGCAAACAAATTGGG+AGG + chr1.4:4569639-4569658 None:intergenic 45.0%
TTGGTCACAGTTCAAATGCG+TGG - chr1.4:4571464-4571483 MS.gene00474:CDS 45.0%
TTGTACCTTGGTAGGAAAGG+CGG - chr1.4:4571253-4571272 MS.gene00474:intron 45.0%
AAGCCCGAAGACTCATCCTT+GGG - chr1.4:4571079-4571098 MS.gene00474:CDS 50.0%
ACTGATGCAGCCACCATAGA+AGG + chr1.4:4571035-4571054 None:intergenic 50.0%
CAAAAGTCCTCAACCTCAGG+TGG + chr1.4:4569899-4569918 None:intergenic 50.0%
CCAACAAACTGAGCTCAGCA+AGG + chr1.4:4570989-4571008 None:intergenic 50.0%
CCTTGCTGAGCTCAGTTTGT+TGG - chr1.4:4570986-4571005 MS.gene00474:CDS 50.0%
GAATACCTCTGCTGCATCTC+TGG - chr1.4:4570678-4570697 MS.gene00474:intron 50.0%
GATTAAGCCACCTGAGGTTG+AGG - chr1.4:4569889-4569908 MS.gene00474:intron 50.0%
GCTCAGCAAGGTAAGAGCAA+AGG + chr1.4:4570977-4570996 None:intergenic 50.0%
GGGATGTTAACGCGAGTATG+AGG - chr1.4:4569384-4569403 MS.gene00474:CDS 50.0%
TAAGCCCGAAGACTCATCCT+TGG - chr1.4:4571078-4571097 MS.gene00474:CDS 50.0%
TCTTTGCTTCACGTTGAGGG+CGG + chr1.4:4568955-4568974 None:intergenic 50.0%
! AACTCCGGTACCGGAGAAAT+TGG - chr1.4:4569126-4569145 MS.gene00474:intron 50.0%
!! ACTCGGTGTTGCTTCGATGT+TGG - chr1.4:4569538-4569557 MS.gene00474:intron 50.0%
!! CTTTTGGGAGGGTCTGAGAT+GGG - chr1.4:4570550-4570569 MS.gene00474:CDS 50.0%
!! GAGTATGAGGGGTGTTCTTG+TGG - chr1.4:4569397-4569416 MS.gene00474:CDS 50.0%
!! GGGTGTTCTTGTGGATTGGT+TGG - chr1.4:4569406-4569425 MS.gene00474:CDS 50.0%
!! TGAGGGGTGTTCTTGTGGAT+TGG - chr1.4:4569402-4569421 MS.gene00474:CDS 50.0%
AAGAGATATCTCCGGGGGAG+AGG + chr1.4:4571499-4571518 None:intergenic 55.0%
AAGAGCCGCCTTTCCTACCA+AGG + chr1.4:4571261-4571280 None:intergenic 55.0%
AGAGATATCTCCGGGGGAGA+GGG + chr1.4:4571498-4571517 None:intergenic 55.0%
CTCCGATGAAACTCCGGTAC+CGG - chr1.4:4569117-4569136 MS.gene00474:intron 55.0%
TACCTCTGCTGCATCTCTGG+TGG - chr1.4:4570681-4570700 MS.gene00474:intron 55.0%
! CTCCGGTACCGGAGTTTCAT+CGG + chr1.4:4569122-4569141 None:intergenic 55.0%
!! GCTTTTGGGAGGGTCTGAGA+TGG - chr1.4:4570549-4570568 MS.gene00474:CDS 55.0%
CGCGTGGGGTTAACGCTCTT+TGG + chr1.4:4568932-4568951 None:intergenic 60.0%
TGCCACCAGAGATGCAGCAG+AGG + chr1.4:4570686-4570705 None:intergenic 60.0%
GGCAACAACACCCTCTCCCC+CGG - chr1.4:4571485-4571504 MS.gene00474:CDS 65.0%
TCACGTTGAGGGCGGCGCGT+GGG + chr1.4:4568947-4568966 None:intergenic 70.0%
TTCACGTTGAGGGCGGCGCG+TGG + chr1.4:4568948-4568967 None:intergenic 70.0%
CACGTTGAGGGCGGCGCGTG+GGG + chr1.4:4568946-4568965 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 4568923 4571551 4568923 ID=MS.gene00474
chr1.4 mRNA 4568923 4571551 4568923 ID=MS.gene00474.t1;Parent=MS.gene00474
chr1.4 exon 4571255 4571551 4571255 ID=MS.gene00474.t1.exon1;Parent=MS.gene00474.t1
chr1.4 CDS 4571255 4571551 4571255 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
chr1.4 exon 4570907 4571139 4570907 ID=MS.gene00474.t1.exon2;Parent=MS.gene00474.t1
chr1.4 CDS 4570907 4571139 4570907 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
chr1.4 exon 4570522 4570597 4570522 ID=MS.gene00474.t1.exon3;Parent=MS.gene00474.t1
chr1.4 CDS 4570522 4570597 4570522 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
chr1.4 exon 4570339 4570415 4570339 ID=MS.gene00474.t1.exon4;Parent=MS.gene00474.t1
chr1.4 CDS 4570339 4570415 4570339 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
chr1.4 exon 4570207 4570243 4570207 ID=MS.gene00474.t1.exon5;Parent=MS.gene00474.t1
chr1.4 CDS 4570207 4570243 4570207 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
chr1.4 exon 4569374 4569523 4569374 ID=MS.gene00474.t1.exon6;Parent=MS.gene00474.t1
chr1.4 CDS 4569374 4569523 4569374 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
chr1.4 exon 4569159 4569293 4569159 ID=MS.gene00474.t1.exon7;Parent=MS.gene00474.t1
chr1.4 CDS 4569159 4569293 4569159 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
chr1.4 exon 4568923 4569000 4568923 ID=MS.gene00474.t1.exon8;Parent=MS.gene00474.t1
chr1.4 CDS 4568923 4569000 4568923 ID=cds.MS.gene00474.t1;Parent=MS.gene00474.t1
Gene Sequence

>MS.gene00474

ATGGAACCAAAGAGCGTTAACCCCACGCGCCGCCCTCAACGTGAAGCAAAGAAAAAAGCCGTAGCTGCACTATGTGAACAACAACGCAAACGAAAACGTGTTCCTCTCGGTGAAATAACAAACGACGTAATCACAAACGCAAACGATGTCGTTTTACCAACGCAGAAAAAACGAAACGTTGCTACTTCATCAAACTCCGATGAAACTCCGGTACCGGAGAAATTGGAGAAATTCGAAGATCCTCAGTTATGTGAAACTTATGTTTCTGATATTTACGATTATCTTCGTAACATGGAGGTAATTTGATTTACTTAATTTAACTTCAAATTTCAATTAGGGTTTTGGTTTTCCCTAATTTGGGGCTTTTTGCTTAATTTAGGGTTTTTTTGTTTTTGTTTTTGTTTGTTTTTAGGTTGATTCTAGTAAGAGGCCATTGTGTGATTATATACAGAAAGTTCAAAGGGATGTTAACGCGAGTATGAGGGGTGTTCTTGTGGATTGGTTGGTTGAAGTTGCTGAAGAATACAAGCTTGTTTCCGATACGCTTTATTTTTCGGTTTCTTATATTGATCGGTTTTTGTCGTTGAATGATTTAACTAGACAGAAGTTACAATTACTCGGTGTTGCTTCGATGTTGGTTGCTTCGTAAGTTTGTTTTTGTTTGTTGTTTTGATTTGTACTTTTGTATTGATGAATAAATACCTAATTTGGTCCCTCCCAATTTGTTTGCACCCAAATTAAAATAACACTCGCATTGGTTTGTTGCATTCTATAATGGTGGTTAAATTAGTTCCTCTATTAATTTTGACCCATTTTAACAGAGATTACTCTTATGAAAATGTCAGGAATTAATCTGGTATATTGGACTATAAACAAATTGTGAGGAGCCAAGATGTGATTTTATTGTTTATTTATTATTTATGCTTATTGATTTTTTATTTGTTTTGGATGTAGAAAATATGAAGAGATTAAGCCACCTGAGGTTGAGGACTTTTGTTACATTACGGACAATACATACTCCAAGGAAGAGGTGAATCTTGTAGTTTAAGTTTTTTGTTTGTGTTGTTGAATGTTTGTTTGGTTTTGGATCTTGCTGATTTTGGATGGTATTGTTTTGGTATTTTGTTTGATTAAAGGTTTTGACCATGGAGGCTGATATTTTGAAGTCATTGAAGTTTGAATTGGGTGGTCCTACAATAAAGACATTCCTAAGGCATGTGTGTTTTATTGATTATGTTTCTTTGTATGTTGAATGGAATTGTTTTTGAATGTTAGCTCACTTTTCATTTTTTCTTTTTCTGTTTGCAGAAGATTCATCACTAAAGTTGGTCTAGAGGGTGTTGATGTAAGTTATCTCATTCTTCAACCCATCTCATAGTAGTTATAGGTTATGACATGGATTCGGTGATTATGTGTGCTTATGTTCAACTTTTAGTAGTGTGGGACTTTTGGTTACTTTTGCTATTGTGTGTGCTTATGTCTTTATGACATTGATTATTCTCTCTTATCAAATAGTATCATCTAAGATAGGGAGATTGTTTGTGAAAATAAGAGATGTTGTATATAAATAGAAAGAGAATTAGAGTGGGTTTTGTCATGTCATTTGGAGAAATAGTTGAACTTTGAGCTTTTGGGAGGGTCTGAGATGGGAATTGAACCTTCTGGATAGTTCATTCAATACTAATTCATGAAAATCAAATTCCTATTTTGTTCTGCAGACTAACAAAACCCATGCAACCTTACTAACTTTTTTAAGAATACCTCTGCTGCATCTCTGGTGGCAAAGAGATGTTTCAACCCTAAATTTTTTGTCAAATGTGGCCAATCTAGCTAGTAGCCACTTTCACAAAGAAAGTATCTTTGGTTTGTGCTATAGGAAGTTTCAAATCTAGTTATCCAGAAGTTTGAAATCAATTTTACTTGGATTATTATTTATTACTCAAAATGTTGCAGGCAAACCCATTTCCGTTTATGTGTGCCAAATCTGGAGACTTTGGTTTGTTTAATACTTTTATCTCTTTTGTGCAGGCTTCTGAGTTGCAGTTTGAGTTCCTTTGCTCTTACCTTGCTGAGCTCAGTTTGTTGGATTATAATTGTGTGAAGTTCTTGCCTTCTATGGTGGCTGCATCAGTTGTATTTCTTGCTCGTTTTATGTTAAGCCCGAAGACTCATCCTTGGGTAATGTTTTAATTCGTGTACAATCTATATTTGGTATTTGACTTTGACACAGTTACTAAAATATTTCCATTTGATTACAGAATTCAGCCATCTATGAATTCACCAGATATAAACCTGCAGACTTGAAGGAATGTGTTCTAAATATACATGACTTGTACCTTGGTAGGAAAGGCGGCTCTTTGCAAGCTGTGAGAGATAAATACAAACAGCATAAGGTGATATTCCTGCACGCTTATTGTCAATCCTTTTTTACCAAACAAACTTAATTTGTCCTACCTTGGCCCAAGCTTTTTAAACAATTGAGTTATTTATTTCATTACACTTGTCACATCTGATGCATTTATGCTGATTCCATTTGTTGTTTTGGTCACAGTTCAAATGCGTGGCAACAACACCCTCTCCCCCGGAGATATCTCTTTCTTTTTTTGAATTTAGAGGGGCTGATCCTTAG

Protein sequence

>MS.gene00474.t1

MEPKSVNPTRRPQREAKKKAVAALCEQQRKRKRVPLGEITNDVITNANDVVLPTQKKRNVATSSNSDETPVPEKLEKFEDPQLCETYVSDIYDYLRNMEVDSSKRPLCDYIQKVQRDVNASMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLTRQKLQLLGVASMLVASKYEEIKPPEVEDFCYITDNTYSKEEVLTMEADILKSLKFELGGPTIKTFLRRFITKVGLEGVDASELQFEFLCSYLAELSLLDYNCVKFLPSMVAASVVFLARFMLSPKTHPWNSAIYEFTRYKPADLKECVLNIHDLYLGRKGGSLQAVRDKYKQHKFKCVATTPSPPEISLSFFEFRGADP