Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69799.t1 | XP_003596610.1 | 98.4 | 122 | 2 | 0 | 9 | 130 | 1 | 122 | 2.00E-61 | 245 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69799.t1 | Q8LDI5 | 63.1 | 111 | 41 | 0 | 18 | 128 | 2 | 112 | 2.0e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69799.t1 | G7IHD7 | 98.4 | 122 | 2 | 0 | 9 | 130 | 1 | 122 | 1.4e-61 | 245.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051699 | MS.gene69799 | 0.813945 | 1.98E-51 | -1.69E-46 |
| MS.gene051832 | MS.gene69799 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene69799 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene052559 | MS.gene69799 | 0.810854 | 9.37E-51 | -1.69E-46 |
| MS.gene052793 | MS.gene69799 | 0.803706 | 3.07E-49 | -1.69E-46 |
| MS.gene054222 | MS.gene69799 | 0.819017 | 1.45E-52 | -1.69E-46 |
| MS.gene056677 | MS.gene69799 | 0.812436 | 4.24E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene69799 | 0.801635 | 8.20E-49 | -1.69E-46 |
| MS.gene05873 | MS.gene69799 | 0.809747 | 1.62E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene69799 | 0.805218 | 1.48E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene69799 | -0.816248 | 6.10E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69799 | MS.gene69451 | PPI |
| MS.gene69799 | MS.gene24227 | PPI |
| MS.gene69799 | MS.gene79654 | PPI |
| MS.gene69799 | MS.gene014475 | PPI |
| MS.gene69799 | MS.gene74758 | PPI |
| MS.gene69799 | MS.gene064706 | PPI |
| MS.gene69799 | MS.gene043301 | PPI |
| MS.gene69799 | MS.gene42302 | PPI |
| MS.gene69799 | MS.gene27271 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69799.t1 | MTR_2g082590 | 98.361 | 122 | 2 | 0 | 9 | 130 | 1 | 122 | 5.26e-88 | 251 |
| MS.gene69799.t1 | MTR_2g082590 | 88.889 | 135 | 2 | 1 | 9 | 130 | 1 | 135 | 6.09e-84 | 241 |
| MS.gene69799.t1 | MTR_4g081380 | 72.131 | 122 | 34 | 0 | 9 | 130 | 1 | 122 | 1.54e-64 | 192 |
| MS.gene69799.t1 | MTR_2g010750 | 61.261 | 111 | 43 | 0 | 18 | 128 | 9 | 119 | 7.49e-49 | 152 |
| MS.gene69799.t1 | MTR_4g081380 | 72.727 | 77 | 21 | 0 | 9 | 85 | 1 | 77 | 6.18e-37 | 121 |
| MS.gene69799.t1 | MTR_2g010750 | 50.562 | 89 | 38 | 1 | 18 | 106 | 9 | 91 | 1.07e-26 | 95.5 |
| MS.gene69799.t1 | MTR_8g005320 | 35.537 | 121 | 76 | 1 | 3 | 121 | 9 | 129 | 9.03e-24 | 89.7 |
| MS.gene69799.t1 | MTR_7g073680 | 36.364 | 110 | 70 | 0 | 20 | 129 | 26 | 135 | 1.50e-23 | 89.0 |
| MS.gene69799.t1 | MTR_8g006685 | 34.959 | 123 | 78 | 1 | 1 | 121 | 76 | 198 | 2.31e-23 | 90.5 |
| MS.gene69799.t1 | MTR_8g006560 | 34.959 | 123 | 78 | 1 | 1 | 121 | 76 | 198 | 2.31e-23 | 90.5 |
| MS.gene69799.t1 | MTR_7g009070 | 39.175 | 97 | 59 | 0 | 25 | 121 | 33 | 129 | 4.74e-23 | 87.8 |
| MS.gene69799.t1 | MTR_5g021180 | 35.135 | 111 | 72 | 0 | 18 | 128 | 8 | 118 | 4.99e-23 | 87.0 |
| MS.gene69799.t1 | MTR_8g107460 | 32.773 | 119 | 80 | 0 | 3 | 121 | 239 | 357 | 6.60e-22 | 89.4 |
| MS.gene69799.t1 | MTR_1g023140 | 35.849 | 106 | 68 | 0 | 16 | 121 | 4 | 109 | 1.04e-21 | 84.0 |
| MS.gene69799.t1 | MTR_3g112410 | 36.275 | 102 | 65 | 0 | 20 | 121 | 8 | 109 | 1.52e-21 | 83.2 |
| MS.gene69799.t1 | MTR_5g037950 | 34.286 | 105 | 69 | 0 | 18 | 122 | 19 | 123 | 3.52e-16 | 69.7 |
| MS.gene69799.t1 | MTR_5g037930 | 33.019 | 106 | 71 | 0 | 17 | 122 | 19 | 124 | 1.67e-14 | 65.5 |
| MS.gene69799.t1 | MTR_5g037890 | 31.776 | 107 | 73 | 0 | 16 | 122 | 16 | 122 | 5.11e-13 | 61.6 |
| MS.gene69799.t1 | MTR_4g088905 | 33.708 | 89 | 59 | 0 | 42 | 130 | 23 | 111 | 6.98e-12 | 61.6 |
| MS.gene69799.t1 | MTR_4g094690 | 25.000 | 108 | 75 | 2 | 21 | 126 | 62 | 165 | 1.10e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69799.t1 | AT1G11530 | 63.063 | 111 | 41 | 0 | 18 | 128 | 2 | 112 | 5.51e-53 | 163 |
| MS.gene69799.t1 | AT3G08710 | 42.056 | 107 | 62 | 0 | 23 | 129 | 28 | 134 | 1.56e-25 | 94.4 |
| MS.gene69799.t1 | AT3G08710 | 42.056 | 107 | 62 | 0 | 23 | 129 | 28 | 134 | 1.56e-25 | 94.4 |
| MS.gene69799.t1 | AT3G08710 | 42.056 | 107 | 62 | 0 | 23 | 129 | 28 | 134 | 1.56e-25 | 94.4 |
| MS.gene69799.t1 | AT3G51030 | 39.623 | 106 | 64 | 0 | 16 | 121 | 4 | 109 | 2.75e-24 | 90.1 |
| MS.gene69799.t1 | AT3G56420 | 37.607 | 117 | 69 | 1 | 5 | 121 | 31 | 143 | 7.59e-24 | 90.5 |
| MS.gene69799.t1 | AT3G56420 | 37.607 | 117 | 69 | 1 | 5 | 121 | 31 | 143 | 7.59e-24 | 90.5 |
| MS.gene69799.t1 | AT3G56420 | 37.607 | 117 | 69 | 1 | 5 | 121 | 31 | 143 | 7.59e-24 | 90.5 |
| MS.gene69799.t1 | AT2G40790 | 35.294 | 119 | 76 | 1 | 3 | 121 | 26 | 143 | 2.39e-23 | 89.0 |
| MS.gene69799.t1 | AT2G40790 | 35.294 | 119 | 76 | 1 | 3 | 121 | 26 | 143 | 2.39e-23 | 89.0 |
| MS.gene69799.t1 | AT3G17880 | 33.333 | 120 | 80 | 0 | 2 | 121 | 247 | 366 | 1.20e-21 | 88.6 |
| MS.gene69799.t1 | AT3G17880 | 33.333 | 120 | 80 | 0 | 2 | 121 | 254 | 373 | 1.36e-21 | 88.6 |
| MS.gene69799.t1 | AT1G59730 | 31.776 | 107 | 73 | 0 | 17 | 123 | 20 | 126 | 1.47e-21 | 83.6 |
| MS.gene69799.t1 | AT1G45145 | 32.692 | 104 | 70 | 0 | 18 | 121 | 5 | 108 | 2.75e-21 | 82.8 |
| MS.gene69799.t1 | AT5G39950 | 34.615 | 104 | 68 | 0 | 18 | 121 | 25 | 128 | 1.71e-20 | 81.3 |
| MS.gene69799.t1 | AT1G19730 | 30.841 | 107 | 73 | 1 | 16 | 121 | 4 | 110 | 7.45e-19 | 76.6 |
| MS.gene69799.t1 | AT5G42980 | 32.673 | 101 | 68 | 0 | 17 | 117 | 4 | 104 | 3.06e-18 | 75.1 |
| MS.gene69799.t1 | AT1G69880 | 27.778 | 108 | 78 | 0 | 20 | 127 | 39 | 146 | 1.40e-16 | 71.6 |
| MS.gene69799.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 20 | 124 | 86 | 192 | 8.67e-14 | 65.1 |
| MS.gene69799.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 20 | 124 | 86 | 192 | 8.67e-14 | 65.1 |
| MS.gene69799.t1 | AT4G04950 | 34.831 | 89 | 58 | 0 | 42 | 130 | 23 | 111 | 3.52e-13 | 65.5 |
| MS.gene69799.t1 | AT1G43560 | 27.523 | 109 | 77 | 2 | 20 | 126 | 56 | 164 | 1.53e-12 | 61.2 |
| MS.gene69799.t1 | AT4G32580 | 33.333 | 90 | 59 | 1 | 42 | 130 | 23 | 112 | 1.59e-12 | 61.2 |
| MS.gene69799.t1 | AT1G31020 | 31.633 | 98 | 65 | 1 | 18 | 113 | 49 | 146 | 6.51e-12 | 59.7 |
| MS.gene69799.t1 | AT4G03520 | 30.841 | 107 | 69 | 3 | 21 | 125 | 82 | 185 | 1.74e-11 | 58.9 |
Find 21 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGATTCATTTGTATAGA+AGG | 0.303846 | 2.4:+16600991 | None:intergenic |
| GAATCCTTTCTTTCAAGAAT+TGG | 0.317619 | 2.4:-16600977 | MS.gene69799:CDS |
| TATGGCTTTAATTTCCATCT+TGG | 0.365887 | 2.4:+16599510 | None:intergenic |
| GATGCCAATTCTTGAAAGAA+AGG | 0.374604 | 2.4:+16600973 | None:intergenic |
| ACTTACTGGGTAACTTTGAT+TGG | 0.376028 | 2.4:+16602230 | None:intergenic |
| GTGCAAATCCTGATGAAATA+AGG | 0.381132 | 2.4:-16599438 | MS.gene69799:CDS |
| ATTGGATGTGGATGAGGTTA+AGG | 0.406643 | 2.4:-16600923 | MS.gene69799:intron |
| TCTCTTTCTCACATTGGATG+TGG | 0.439009 | 2.4:-16600935 | MS.gene69799:CDS |
| GGCTTTAATTTCCATCTTGG+AGG | 0.439612 | 2.4:+16599513 | None:intergenic |
| ATCCTGATGAAATAAGGAAA+AGG | 0.449385 | 2.4:-16599432 | MS.gene69799:CDS |
| ACAACAACAAAAGAAAGAAA+TGG | 0.465941 | 2.4:-16602334 | MS.gene69799:CDS |
| TCTCACATTGGATGTGGATG+AGG | 0.476730 | 2.4:-16600929 | MS.gene69799:CDS |
| TCCTGATGAAATAAGGAAAA+GGG | 0.497571 | 2.4:-16599431 | MS.gene69799:CDS |
| AGATGTTCTCTTTCTCACAT+TGG | 0.507095 | 2.4:-16600941 | MS.gene69799:CDS |
| TCAGGAAATTGCCTCCAAGA+TGG | 0.538009 | 2.4:-16599524 | MS.gene69799:intron |
| TCCATAATAGATCTTTAGGA+AGG | 0.541604 | 2.4:+16599385 | None:intergenic |
| AACTCTTGTGGACAAAATTG+TGG | 0.565813 | 2.4:-16599461 | MS.gene69799:CDS |
| TTTGAATGGAGGAACTCTTG+TGG | 0.568819 | 2.4:-16599473 | MS.gene69799:CDS |
| ACAACAAAAGAAAGAAATGG+AGG | 0.594542 | 2.4:-16602331 | MS.gene69799:CDS |
| CAACAAAAGAAAGAAATGGA+GGG | 0.610986 | 2.4:-16602330 | MS.gene69799:CDS |
| ACTCTTGTGGACAAAATTGT+GGG | 0.620063 | 2.4:-16599460 | MS.gene69799:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAAAAAAAAAAAGAA+TGG | - | chr2.4:16600069-16600088 | MS.gene69799:intron | 10.0% |
| !!! | AAAAAATTCTAATTTTTTTC+AGG | + | chr2.4:16601537-16601556 | None:intergenic | 10.0% |
| !!! | CTTTTAAATATTACTAAAAT+TGG | - | chr2.4:16600676-16600695 | MS.gene69799:intron | 10.0% |
| !!! | TAATAATTAACTTTTGATAT+AGG | + | chr2.4:16602081-16602100 | None:intergenic | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | chr2.4:16601662-16601681 | MS.gene69799:intron | 10.0% |
| !!! | TGAAAATTGAAAATTTTATA+GGG | - | chr2.4:16601746-16601765 | MS.gene69799:intron | 10.0% |
| !! | AAAATATCTCAAAAATTCTA+AGG | - | chr2.4:16599434-16599453 | MS.gene69799:CDS | 15.0% |
| !! | AAATTACAAATCATTAACAT+AGG | - | chr2.4:16599962-16599981 | MS.gene69799:intron | 15.0% |
| !! | TAAATTTCATAATGTTAATG+AGG | - | chr2.4:16601945-16601964 | MS.gene69799:intron | 15.0% |
| !! | TTTAATTGCATATACTATAA+AGG | + | chr2.4:16601140-16601159 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATTTTCACTTT+TGG | + | chr2.4:16601742-16601761 | None:intergenic | 15.0% |
| !!! | ACATAAATTAAGTTGAAAAT+AGG | + | chr2.4:16601464-16601483 | None:intergenic | 15.0% |
| !!! | ATTTGGAGTAAAAAAATAAA+AGG | + | chr2.4:16601247-16601266 | None:intergenic | 15.0% |
| !!! | CATAAATTAAGTTGAAAATA+GGG | + | chr2.4:16601463-16601482 | None:intergenic | 15.0% |
| !!! | GTGAAAATTGAAAATTTTAT+AGG | - | chr2.4:16601745-16601764 | MS.gene69799:intron | 15.0% |
| !!! | TAGAATTTTTGAGATATTTT+TGG | + | chr2.4:16599434-16599453 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr2.4:16601432-16601451 | None:intergenic | 15.0% |
| !!! | TCTTTTGTTAATATTTGTTT+GGG | - | chr2.4:16600389-16600408 | MS.gene69799:intron | 15.0% |
| !!! | TTTTTTACTCCAAATTAAAT+GGG | - | chr2.4:16601252-16601271 | MS.gene69799:intron | 15.0% |
| !!! | TTTTTTTACTCCAAATTAAA+TGG | - | chr2.4:16601251-16601270 | MS.gene69799:intron | 15.0% |
| !! | AAAACTAGGTATTATTTGTT+TGG | - | chr2.4:16600366-16600385 | MS.gene69799:intron | 20.0% |
| !! | AAATAGACTCAAAAAAATCA+TGG | - | chr2.4:16599463-16599482 | MS.gene69799:CDS | 20.0% |
| !! | AAATTTAGCAGATATAAGTA+GGG | + | chr2.4:16600623-16600642 | None:intergenic | 20.0% |
| !! | AATAGACTCAAAAAAATCAT+GGG | - | chr2.4:16599464-16599483 | MS.gene69799:CDS | 20.0% |
| !! | AATTAGAAAAATCCAAAACT+AGG | - | chr2.4:16600352-16600371 | MS.gene69799:intron | 20.0% |
| !! | CAGAATAAAATAGATGAAAT+AGG | - | chr2.4:16599886-16599905 | MS.gene69799:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr2.4:16601806-16601825 | MS.gene69799:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr2.4:16601825-16601806 | None:intergenic | 20.0% |
| !! | TAAATTTAGCAGATATAAGT+AGG | + | chr2.4:16600624-16600643 | None:intergenic | 20.0% |
| !! | TAGATCTCATTTAGTAAAAT+TGG | + | chr2.4:16600139-16600158 | None:intergenic | 20.0% |
| !! | TGTTTACATTAATATATACG+TGG | - | chr2.4:16602185-16602204 | MS.gene69799:intron | 20.0% |
| !!! | AAACAAATAATACCTAGTTT+TGG | + | chr2.4:16600367-16600386 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr2.4:16601436-16601455 | MS.gene69799:intron | 20.0% |
| !!! | AATGATTTTTCATAAAGGAA+AGG | + | chr2.4:16599536-16599555 | None:intergenic | 20.0% |
| !!! | ATAATGGAATAAATTGAAAG+TGG | - | chr2.4:16600183-16600202 | MS.gene69799:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr2.4:16601714-16601733 | MS.gene69799:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr2.4:16601433-16601452 | None:intergenic | 20.0% |
| !!! | GTCTTTTGTTAATATTTGTT+TGG | - | chr2.4:16600388-16600407 | MS.gene69799:intron | 20.0% |
| !!! | TAAAATTTTCCTTCAACTTT+TGG | - | chr2.4:16601405-16601424 | MS.gene69799:intron | 20.0% |
| !!! | TAAAGGGTTAAATATGTTTT+TGG | - | chr2.4:16601345-16601364 | MS.gene69799:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr2.4:16601715-16601734 | MS.gene69799:intron | 20.0% |
| !!! | TGCTAAATGATTTTTCATAA+AGG | + | chr2.4:16599541-16599560 | None:intergenic | 20.0% |
| ! | AAAGGATTCATTTGTATAGA+AGG | + | chr2.4:16600750-16600769 | None:intergenic | 25.0% |
| ! | AATTTAGCAGATATAAGTAG+GGG | + | chr2.4:16600622-16600641 | None:intergenic | 25.0% |
| ! | ACAACAACAAAAGAAAGAAA+TGG | - | chr2.4:16599404-16599423 | MS.gene69799:CDS | 25.0% |
| ! | ATCTCTCATAATTCATAACT+GGG | + | chr2.4:16600226-16600245 | None:intergenic | 25.0% |
| ! | ATGGTATATAAAGGATATCA+AGG | - | chr2.4:16600935-16600954 | MS.gene69799:CDS | 25.0% |
| ! | ATTCTGCTAAACTTATATCT+AGG | - | chr2.4:16599678-16599697 | MS.gene69799:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr2.4:16601805-16601824 | MS.gene69799:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | chr2.4:16601824-16601805 | None:intergenic | 25.0% |
| ! | TCTGTAAAAAAAAATCGACA+TGG | + | chr2.4:16602003-16602022 | None:intergenic | 25.0% |
| ! | TGGGCTAATATTATATGTAT+GGG | - | chr2.4:16600423-16600442 | MS.gene69799:intron | 25.0% |
| ! | TTATAGGGATTAAAAGTTGA+AGG | - | chr2.4:16601761-16601780 | MS.gene69799:intron | 25.0% |
| ! | TTCTGCTAAACTTATATCTA+GGG | - | chr2.4:16599679-16599698 | MS.gene69799:intron | 25.0% |
| ! | TTGGGCTAATATTATATGTA+TGG | - | chr2.4:16600422-16600441 | MS.gene69799:intron | 25.0% |
| !! | AAGAGGGTTAAATATGTTTT+TGG | + | chr2.4:16601833-16601852 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr2.4:16601774-16601793 | MS.gene69799:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr2.4:16601793-16601774 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr2.4:16601775-16601794 | MS.gene69799:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr2.4:16601794-16601775 | None:intergenic | 25.0% |
| !! | ATGTGCTTAACTTTTAACAA+TGG | - | chr2.4:16601107-16601126 | MS.gene69799:intron | 25.0% |
| !! | CATATTTAACCCTTTAAAAG+AGG | + | chr2.4:16601341-16601360 | None:intergenic | 25.0% |
| !! | TATTTTCCCTAACGTTAATA+TGG | + | chr2.4:16602043-16602062 | None:intergenic | 25.0% |
| !! | TGTGCTTAACTTTTAACAAT+GGG | - | chr2.4:16601108-16601127 | MS.gene69799:intron | 25.0% |
| !!! | ATAATGTTAATGAGGTATTG+AGG | - | chr2.4:16601953-16601972 | MS.gene69799:intron | 25.0% |
| !!! | CTCACTGTAATTTTAATATG+CGG | + | chr2.4:16599566-16599585 | None:intergenic | 25.0% |
| AAGCATGAACCCATTTAATT+TGG | + | chr2.4:16601264-16601283 | None:intergenic | 30.0% | |
| AAGTGAACCATATTAACGTT+AGG | - | chr2.4:16602033-16602052 | MS.gene69799:intron | 30.0% | |
| ACAACAAAAGAAAGAAATGG+AGG | - | chr2.4:16599407-16599426 | MS.gene69799:CDS | 30.0% | |
| AGTGAACCATATTAACGTTA+GGG | - | chr2.4:16602034-16602053 | MS.gene69799:intron | 30.0% | |
| ATATATACGTGGCTATATTC+AGG | - | chr2.4:16602196-16602215 | MS.gene69799:intron | 30.0% | |
| ATATGATACATAGTGGTGTT+TGG | + | chr2.4:16601006-16601025 | None:intergenic | 30.0% | |
| ATCCTGATGAAATAAGGAAA+AGG | - | chr2.4:16602306-16602325 | MS.gene69799:CDS | 30.0% | |
| CAAAAAAAGAAAGGTAGGTA+TGG | + | chr2.4:16602249-16602268 | None:intergenic | 30.0% | |
| CAACAAAAGAAAGAAATGGA+GGG | - | chr2.4:16599408-16599427 | MS.gene69799:CDS | 30.0% | |
| CATCTCTCATAATTCATAAC+TGG | + | chr2.4:16600227-16600246 | None:intergenic | 30.0% | |
| CCATTCAAAAAAAGAAAGGT+AGG | + | chr2.4:16602254-16602273 | None:intergenic | 30.0% | |
| GAATCCTTTCTTTCAAGAAT+TGG | - | chr2.4:16600761-16600780 | MS.gene69799:intron | 30.0% | |
| GACATGCAAATGGTATATAA+AGG | - | chr2.4:16600926-16600945 | MS.gene69799:CDS | 30.0% | |
| GCATATAGTATAAGCAAACA+AGG | + | chr2.4:16601032-16601051 | None:intergenic | 30.0% | |
| GCTAATATTATATGTATGGG+CGG | - | chr2.4:16600426-16600445 | MS.gene69799:intron | 30.0% | |
| TATATACCATTTGCATGTCT+TGG | + | chr2.4:16600925-16600944 | None:intergenic | 30.0% | |
| TCCTCCATTCAAAAAAAGAA+AGG | + | chr2.4:16602258-16602277 | None:intergenic | 30.0% | |
| TCCTGATGAAATAAGGAAAA+GGG | - | chr2.4:16602307-16602326 | MS.gene69799:CDS | 30.0% | |
| ! | AAATTGGTCTAAAATACTGC+AGG | - | chr2.4:16600692-16600711 | MS.gene69799:intron | 30.0% |
| ! | ACACTTTAGATGGATTTGTA+TGG | + | chr2.4:16600970-16600989 | None:intergenic | 30.0% |
| ! | ATTCATGAGAAGAAGCATAA+TGG | - | chr2.4:16600167-16600186 | MS.gene69799:intron | 30.0% |
| ! | CCATCTAAAGTGTTTGTATT+CGG | - | chr2.4:16600977-16600996 | MS.gene69799:CDS | 30.0% |
| !! | AAGTTTTGTCAAAATCACAG+TGG | - | chr2.4:16599646-16599665 | MS.gene69799:intron | 30.0% |
| !! | TATGGCTTTAATTTCCATCT+TGG | + | chr2.4:16602231-16602250 | None:intergenic | 30.0% |
| !! | TGTTAAAAACGGATTGAGAT+GGG | + | chr2.4:16600506-16600525 | None:intergenic | 30.0% |
| !!! | ACCTTTCTTTTTTTGAATGG+AGG | - | chr2.4:16602254-16602273 | MS.gene69799:CDS | 30.0% |
| !!! | CCTACCTTTCTTTTTTTGAA+TGG | - | chr2.4:16602251-16602270 | MS.gene69799:CDS | 30.0% |
| AACTCTTGTGGACAAAATTG+TGG | - | chr2.4:16602277-16602296 | MS.gene69799:CDS | 35.0% | |
| AATATTAGCCCAAACTCACT+TGG | + | chr2.4:16600415-16600434 | None:intergenic | 35.0% | |
| ACTCTTGTGGACAAAATTGT+GGG | - | chr2.4:16602278-16602297 | MS.gene69799:CDS | 35.0% | |
| ACTTACTGGGTAACTTTGAT+TGG | + | chr2.4:16599511-16599530 | None:intergenic | 35.0% | |
| AGAAAATTGATCTGCGATGA+TGG | - | chr2.4:16600269-16600288 | MS.gene69799:intron | 35.0% | |
| AGATGTTCTCTTTCTCACAT+TGG | - | chr2.4:16600797-16600816 | MS.gene69799:intron | 35.0% | |
| ATAAAGGAAAGGAGACTTAC+TGG | + | chr2.4:16599525-16599544 | None:intergenic | 35.0% | |
| ATATTATATGTATGGGCGGT+CGG | - | chr2.4:16600430-16600449 | MS.gene69799:intron | 35.0% | |
| ATTTGCGATTCTCTTCTTTG+TGG | + | chr2.4:16599992-16600011 | None:intergenic | 35.0% | |
| CCGAATACAAACACTTTAGA+TGG | + | chr2.4:16600980-16600999 | None:intergenic | 35.0% | |
| CTTTATCTAATTCTCTCTGC+TGG | + | chr2.4:16600323-16600342 | None:intergenic | 35.0% | |
| GAAAGAACGCAAATGAAGAA+TGG | - | chr2.4:16600032-16600051 | MS.gene69799:intron | 35.0% | |
| GATCTAGAAACTGAAATTGC+AGG | + | chr2.4:16601216-16601235 | None:intergenic | 35.0% | |
| GATGCCAATTCTTGAAAGAA+AGG | + | chr2.4:16600768-16600787 | None:intergenic | 35.0% | |
| GGATTGAGATGGGTAATATT+GGG | + | chr2.4:16600496-16600515 | None:intergenic | 35.0% | |
| GTGCAAATCCTGATGAAATA+AGG | - | chr2.4:16602300-16602319 | MS.gene69799:CDS | 35.0% | |
| GTTTGAATTTATTGGTCCAG+CGG | + | chr2.4:16600465-16600484 | None:intergenic | 35.0% | |
| TAAAGGAAAGGAGACTTACT+GGG | + | chr2.4:16599524-16599543 | None:intergenic | 35.0% | |
| TACAAACTACCACCAATAGT+TGG | + | chr2.4:16601287-16601306 | None:intergenic | 35.0% | |
| TGGTTGTTACACTGGAAAAA+TGG | + | chr2.4:16601983-16602002 | None:intergenic | 35.0% | |
| TTATAGGGACCAAAAGTTGA+AGG | + | chr2.4:16601417-16601436 | None:intergenic | 35.0% | |
| ! | AAGGAGCATATGATACATAG+TGG | + | chr2.4:16601013-16601032 | None:intergenic | 35.0% |
| ! | ATATTCTCATCCGTGGATTA+CGG | + | chr2.4:16599755-16599774 | None:intergenic | 35.0% |
| ! | ATTGCTTCTGCCTCTTTTAA+AGG | - | chr2.4:16601328-16601347 | MS.gene69799:intron | 35.0% |
| ! | TTGCTTCTGCCTCTTTTAAA+GGG | - | chr2.4:16601329-16601348 | MS.gene69799:intron | 35.0% |
| !! | ACCCTTTTCCTTATTTCATC+AGG | + | chr2.4:16602311-16602330 | None:intergenic | 35.0% |
| !! | GTGTTAAAAACGGATTGAGA+TGG | + | chr2.4:16600507-16600526 | None:intergenic | 35.0% |
| !! | TCGGTTCGGTTTGAATTTAT+TGG | + | chr2.4:16600473-16600492 | None:intergenic | 35.0% |
| !! | TGGTTCATTTCTCTGCTTTT+TGG | - | chr2.4:16600718-16600737 | MS.gene69799:intron | 35.0% |
| !!! | GGTTTTGTTTCTCTCTTTCA+TGG | + | chr2.4:16600118-16600137 | None:intergenic | 35.0% |
| AATCGACATGGTTGTTACAC+TGG | + | chr2.4:16601991-16602010 | None:intergenic | 40.0% | |
| AGCCCATTAAAAACCGAGTT+GGG | + | chr2.4:16600560-16600579 | None:intergenic | 40.0% | |
| ATTGGATGTGGATGAGGTTA+AGG | - | chr2.4:16600815-16600834 | MS.gene69799:intron | 40.0% | |
| CATTTGCATGTCTTGGCAAA+TGG | + | chr2.4:16600918-16600937 | None:intergenic | 40.0% | |
| CATTTGCCAAGACATGCAAA+TGG | - | chr2.4:16600916-16600935 | MS.gene69799:intron | 40.0% | |
| CGGATTGAGATGGGTAATAT+TGG | + | chr2.4:16600497-16600516 | None:intergenic | 40.0% | |
| GGATGTAATATTCTCATCCG+TGG | + | chr2.4:16599762-16599781 | None:intergenic | 40.0% | |
| TCTCTTTCTCACATTGGATG+TGG | - | chr2.4:16600803-16600822 | MS.gene69799:intron | 40.0% | |
| TGAGATGGGTAATATTGGGT+CGG | + | chr2.4:16600492-16600511 | None:intergenic | 40.0% | |
| TTAGCAGATATAAGTAGGGG+TGG | + | chr2.4:16600619-16600638 | None:intergenic | 40.0% | |
| TTCATGCTTCCAACTATTGG+TGG | - | chr2.4:16601275-16601294 | MS.gene69799:intron | 40.0% | |
| TTTGAATGGAGGAACTCTTG+TGG | - | chr2.4:16602265-16602284 | MS.gene69799:CDS | 40.0% | |
| ! | CACCCAACTCGGTTTTTAAT+GGG | - | chr2.4:16600555-16600574 | MS.gene69799:intron | 40.0% |
| ! | CATTAAAAACCGAGTTGGGT+GGG | + | chr2.4:16600556-16600575 | None:intergenic | 40.0% |
| ! | GCTAAACTTATATCTAGGGC+AGG | - | chr2.4:16599683-16599702 | MS.gene69799:intron | 40.0% |
| ! | GGCTTTAATTTCCATCTTGG+AGG | + | chr2.4:16602228-16602247 | None:intergenic | 40.0% |
| ! | GTCTAAAATACTGCAGGTTG+TGG | - | chr2.4:16600698-16600717 | MS.gene69799:intron | 40.0% |
| ! | TATATCTAGGGCAGGACAAT+CGG | - | chr2.4:16599691-16599710 | MS.gene69799:intron | 40.0% |
| !!! | TTTTAATGGGCTGGATTGCA+CGG | - | chr2.4:16600568-16600587 | MS.gene69799:intron | 40.0% |
| CAGCCCATTAAAAACCGAGT+TGG | + | chr2.4:16600561-16600580 | None:intergenic | 45.0% | |
| GGGTTCATGCTTCCAACTAT+TGG | - | chr2.4:16601272-16601291 | MS.gene69799:intron | 45.0% | |
| GGTCACACGGGTGTTAAAAA+CGG | + | chr2.4:16600517-16600536 | None:intergenic | 45.0% | |
| TCAGGAAATTGCCTCCAAGA+TGG | - | chr2.4:16602214-16602233 | MS.gene69799:intron | 45.0% | |
| TCTCACATTGGATGTGGATG+AGG | - | chr2.4:16600809-16600828 | MS.gene69799:intron | 45.0% | |
| TCTGCTGGATTCTCCTTCTT+TGG | + | chr2.4:16600308-16600327 | None:intergenic | 45.0% | |
| TGGGTAATATTGGGTCGGTT+CGG | + | chr2.4:16600487-16600506 | None:intergenic | 45.0% | |
| TGTTTGGGCCAAGTGAGTTT+GGG | - | chr2.4:16600404-16600423 | MS.gene69799:intron | 45.0% | |
| TTGTTTGGGCCAAGTGAGTT+TGG | - | chr2.4:16600403-16600422 | MS.gene69799:intron | 45.0% | |
| ! | CCACCCAACTCGGTTTTTAA+TGG | - | chr2.4:16600554-16600573 | MS.gene69799:intron | 45.0% |
| ! | CCATTAAAAACCGAGTTGGG+TGG | + | chr2.4:16600557-16600576 | None:intergenic | 45.0% |
| ! | CTGCTAGTTTAGGCCAAAGA+AGG | - | chr2.4:16600292-16600311 | MS.gene69799:intron | 45.0% |
| !! | CAACTCGGTTTTTAATGGGC+TGG | - | chr2.4:16600559-16600578 | MS.gene69799:intron | 45.0% |
| !! | ATAATAAAATAATTTAAAAG+AGG | + | chr2.4:16601850-16601869 | None:intergenic | 5.0% |
| !! | TAATAAAATAATTTAAAAGA+GGG | + | chr2.4:16601849-16601868 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAAATTTTTTT+TGG | - | chr2.4:16601630-16601649 | MS.gene69799:intron | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr2.4:16601591-16601610 | None:intergenic | 5.0% |
| !!! | TATAATAAATTATTCATTTT+TGG | - | chr2.4:16601895-16601914 | MS.gene69799:intron | 5.0% |
| ATTCCGTCCGTCTAGTGCTA+CGG | - | chr2.4:16599783-16599802 | MS.gene69799:intron | 50.0% | |
| TAGCACTAGACGGACGGAAT+TGG | + | chr2.4:16599783-16599802 | None:intergenic | 50.0% | |
| TCCCAATCCACCGTAATCCA+CGG | - | chr2.4:16599742-16599761 | MS.gene69799:intron | 50.0% | |
| TTTCGGTTTCGGCGGTTTCT+CGG | - | chr2.4:16599815-16599834 | MS.gene69799:intron | 50.0% | |
| ! | ATCCGTGGATTACGGTGGAT+TGG | + | chr2.4:16599747-16599766 | None:intergenic | 50.0% |
| ! | GCGATGATGGCTGCTAGTTT+AGG | - | chr2.4:16600282-16600301 | MS.gene69799:intron | 50.0% |
| ! | TCCGTGGATTACGGTGGATT+GGG | + | chr2.4:16599746-16599765 | None:intergenic | 50.0% |
| ! | TTCTCATCCGTGGATTACGG+TGG | + | chr2.4:16599752-16599771 | None:intergenic | 50.0% |
| ATGTATGGGCGGTCGGTCAT+GGG | - | chr2.4:16600437-16600456 | MS.gene69799:intron | 55.0% | |
| CCGATTGAACCCACCCAACT+CGG | - | chr2.4:16600544-16600563 | MS.gene69799:intron | 55.0% | |
| GAACCGTAGCACTAGACGGA+CGG | + | chr2.4:16599789-16599808 | None:intergenic | 55.0% | |
| GAGCGAACCGTAGCACTAGA+CGG | + | chr2.4:16599793-16599812 | None:intergenic | 55.0% | |
| GGTTCGCTCGGTTTCGGTTT+CGG | - | chr2.4:16599804-16599823 | MS.gene69799:intron | 55.0% | |
| GTCTAGTGCTACGGTTCGCT+CGG | - | chr2.4:16599792-16599811 | MS.gene69799:intron | 55.0% | |
| TATGTATGGGCGGTCGGTCA+TGG | - | chr2.4:16600436-16600455 | MS.gene69799:intron | 55.0% | |
| TGCTACGGTTCGCTCGGTTT+CGG | - | chr2.4:16599798-16599817 | MS.gene69799:intron | 55.0% | |
| ! | AATCGGGTTGTCGGGTCACA+CGG | + | chr2.4:16600530-16600549 | None:intergenic | 55.0% |
| ! | CCGAGTTGGGTGGGTTCAAT+CGG | + | chr2.4:16600547-16600566 | None:intergenic | 55.0% |
| ! | CGAGTTGGGTGGGTTCAATC+GGG | + | chr2.4:16600546-16600565 | None:intergenic | 55.0% |
| ! | GGTGGGTTCAATCGGGTTGT+CGG | + | chr2.4:16600539-16600558 | None:intergenic | 55.0% |
| ! | GTGGGTTCAATCGGGTTGTC+GGG | + | chr2.4:16600538-16600557 | None:intergenic | 55.0% |
| ! | TCTAGGGCAGGACAATCGGT+CGG | - | chr2.4:16599695-16599714 | MS.gene69799:intron | 55.0% |
| ! | TGCACGGTTTGGGTCGAGTA+CGG | - | chr2.4:16600584-16600603 | MS.gene69799:intron | 55.0% |
| ! | TGGGCTGGATTGCACGGTTT+GGG | - | chr2.4:16600574-16600593 | MS.gene69799:intron | 55.0% |
| !! | ATGGGCTGGATTGCACGGTT+TGG | - | chr2.4:16600573-16600592 | MS.gene69799:intron | 55.0% |
| !! | TTGGCTCGGGCGAGTTGAAT+CGG | - | chr2.4:16599838-16599857 | MS.gene69799:intron | 55.0% |
| GGCAGGACAATCGGTCGGTT+CGG | - | chr2.4:16599700-16599719 | MS.gene69799:intron | 60.0% | |
| GGTTTCGGCGGTTTCTCGGT+TGG | - | chr2.4:16599819-16599838 | MS.gene69799:intron | 60.0% | |
| TCGCTCGGTTTCGGTTTCGG+CGG | - | chr2.4:16599807-16599826 | MS.gene69799:intron | 60.0% | |
| ! | ATCGGGTTGTCGGGTCACAC+GGG | + | chr2.4:16600529-16600548 | None:intergenic | 60.0% |
| !! | CGGTCGGTTCGGTCGGATTT+CGG | - | chr2.4:16599711-16599730 | MS.gene69799:intron | 60.0% |
| !! | GGACAATCGGTCGGTTCGGT+CGG | - | chr2.4:16599704-16599723 | MS.gene69799:intron | 60.0% |
| !! | GGTCGGTTCGGTCGGATTTC+GGG | - | chr2.4:16599712-16599731 | MS.gene69799:intron | 60.0% |
| ! | CGGCGGTTTCTCGGTTGGCT+CGG | - | chr2.4:16599824-16599843 | MS.gene69799:intron | 65.0% |
| ! | GGCGGTTTCTCGGTTGGCTC+GGG | - | chr2.4:16599825-16599844 | MS.gene69799:intron | 65.0% |
| ! | CGGTCGGTCATGGGTACCGC+TGG | - | chr2.4:16600446-16600465 | MS.gene69799:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 16599399 | 16602361 | 16599399 | ID=MS.gene69799 |
| chr2.4 | mRNA | 16599399 | 16602361 | 16599399 | ID=MS.gene69799.t1;Parent=MS.gene69799 |
| chr2.4 | exon | 16602236 | 16602361 | 16602236 | ID=MS.gene69799.t1.exon1;Parent=MS.gene69799.t1 |
| chr2.4 | CDS | 16602236 | 16602361 | 16602236 | ID=cds.MS.gene69799.t1;Parent=MS.gene69799.t1 |
| chr2.4 | exon | 16600924 | 16601046 | 16600924 | ID=MS.gene69799.t1.exon2;Parent=MS.gene69799.t1 |
| chr2.4 | CDS | 16600924 | 16601046 | 16600924 | ID=cds.MS.gene69799.t1;Parent=MS.gene69799.t1 |
| chr2.4 | exon | 16599399 | 16599542 | 16599399 | ID=MS.gene69799.t1.exon3;Parent=MS.gene69799.t1 |
| chr2.4 | CDS | 16599399 | 16599542 | 16599399 | ID=cds.MS.gene69799.t1;Parent=MS.gene69799.t1 |
| Gene Sequence |
| Protein sequence |
