Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014764.t1 | RHN70724.1 | 97.7 | 309 | 7 | 0 | 1 | 309 | 1 | 309 | 1.70E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014764.t1 | Q9FFB6 | 67.9 | 265 | 85 | 0 | 44 | 308 | 7 | 271 | 1.0e-93 | 344.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014764.t1 | A0A396J207 | 97.7 | 309 | 7 | 0 | 1 | 309 | 1 | 309 | 1.2e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96207 | MS.gene014764 | PPI |
| MS.gene014764 | MS.gene007740 | PPI |
| MS.gene014764 | MS.gene03701 | PPI |
| MS.gene014764 | MS.gene004457 | PPI |
| MS.gene014764 | MS.gene002763 | PPI |
| MS.gene014764 | MS.gene049765 | PPI |
| MS.gene014764 | MS.gene00991 | PPI |
| MS.gene014764 | MS.gene09127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014764.t1 | MTR_3g108240 | 97.411 | 309 | 8 | 0 | 1 | 309 | 1 | 309 | 0.0 | 624 |
| MS.gene014764.t1 | MTR_3g108240 | 96.764 | 309 | 8 | 1 | 1 | 309 | 1 | 307 | 0.0 | 614 |
| MS.gene014764.t1 | MTR_1g047740 | 72.492 | 309 | 77 | 2 | 1 | 309 | 1 | 301 | 9.15e-169 | 470 |
| MS.gene014764.t1 | MTR_7g102990 | 71.654 | 254 | 72 | 0 | 56 | 309 | 16 | 269 | 9.94e-141 | 399 |
| MS.gene014764.t1 | MTR_4g057310 | 70.850 | 247 | 72 | 0 | 62 | 308 | 16 | 262 | 1.44e-136 | 388 |
| MS.gene014764.t1 | MTR_1g010150 | 83.902 | 205 | 33 | 0 | 105 | 309 | 1 | 205 | 8.46e-131 | 370 |
| MS.gene014764.t1 | MTR_2g020040 | 58.468 | 248 | 102 | 1 | 58 | 305 | 12 | 258 | 3.10e-108 | 315 |
| MS.gene014764.t1 | MTR_4g057310 | 70.918 | 196 | 57 | 0 | 62 | 257 | 19 | 214 | 2.34e-107 | 311 |
| MS.gene014764.t1 | MTR_7g102990 | 70.492 | 183 | 54 | 0 | 56 | 238 | 16 | 198 | 3.21e-95 | 281 |
| MS.gene014764.t1 | MTR_8g104410 | 34.343 | 297 | 166 | 8 | 27 | 308 | 717 | 999 | 4.65e-50 | 178 |
| MS.gene014764.t1 | MTR_8g104410 | 34.343 | 297 | 166 | 8 | 27 | 308 | 953 | 1235 | 6.15e-50 | 178 |
| MS.gene014764.t1 | MTR_4g107440 | 35.816 | 282 | 153 | 8 | 29 | 305 | 1011 | 1269 | 5.05e-49 | 175 |
| MS.gene014764.t1 | MTR_6g083900 | 40.000 | 250 | 131 | 8 | 62 | 305 | 986 | 1222 | 5.52e-49 | 175 |
| MS.gene014764.t1 | MTR_1g010170 | 60.465 | 43 | 17 | 0 | 1 | 43 | 1 | 43 | 6.73e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014764.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene014764.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene014764.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene014764.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene014764.t1 | AT5G25560 | 66.978 | 321 | 91 | 4 | 1 | 309 | 1 | 318 | 7.11e-152 | 428 |
| MS.gene014764.t1 | AT5G25560 | 67.846 | 311 | 90 | 4 | 1 | 309 | 1 | 303 | 3.91e-149 | 421 |
| MS.gene014764.t1 | AT5G22920 | 65.660 | 265 | 91 | 0 | 44 | 308 | 7 | 271 | 3.88e-135 | 385 |
| MS.gene014764.t1 | AT5G22920 | 64.935 | 231 | 81 | 0 | 44 | 274 | 7 | 237 | 8.89e-115 | 331 |
| MS.gene014764.t1 | AT5G18650 | 57.874 | 254 | 106 | 1 | 52 | 305 | 6 | 258 | 2.21e-110 | 321 |
| MS.gene014764.t1 | AT3G62970 | 53.968 | 252 | 114 | 2 | 55 | 306 | 26 | 275 | 1.56e-100 | 297 |
| MS.gene014764.t1 | AT3G62970 | 54.884 | 215 | 96 | 1 | 55 | 269 | 26 | 239 | 1.29e-88 | 265 |
| MS.gene014764.t1 | AT3G62970 | 54.854 | 206 | 92 | 1 | 55 | 260 | 26 | 230 | 5.15e-84 | 253 |
| MS.gene014764.t1 | AT1G74770 | 39.007 | 282 | 143 | 8 | 29 | 305 | 1000 | 1257 | 7.16e-56 | 195 |
| MS.gene014764.t1 | AT1G18910 | 39.858 | 281 | 140 | 8 | 30 | 305 | 996 | 1252 | 2.98e-54 | 191 |
| MS.gene014764.t1 | AT3G18290 | 38.976 | 254 | 135 | 7 | 62 | 309 | 1004 | 1243 | 1.64e-50 | 179 |
| MS.gene014764.t1 | AT1G74770 | 38.496 | 226 | 110 | 8 | 29 | 249 | 1000 | 1201 | 8.62e-41 | 151 |
Find 58 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAGGATATATGGAGTA+TGG | 0.207183 | 3.1:+86334405 | MS.gene014764:CDS |
| ACCGGAGAAGGTGTCGTATT+AGG | 0.258966 | 3.1:+86334523 | MS.gene014764:CDS |
| TTTCATTCAGACAGCTCTTA+TGG | 0.265918 | 3.1:-86336108 | None:intergenic |
| TGAACCATATCTTAATAAAA+TGG | 0.283237 | 3.1:+86336328 | MS.gene014764:CDS |
| TTGTGATATGTCAAAGGTTT+GGG | 0.324215 | 3.1:+86336268 | MS.gene014764:CDS |
| CCGGAGAAGGTGTCGTATTA+GGG | 0.346547 | 3.1:+86334524 | MS.gene014764:CDS |
| TCTGTAGATGTCAACATTAC+CGG | 0.349957 | 3.1:+86334505 | MS.gene014764:intron |
| CTTGCGAGAGAGAGGATATA+TGG | 0.362778 | 3.1:+86334398 | MS.gene014764:CDS |
| ATGCATGTGCTCTTCATTTG+AGG | 0.389882 | 3.1:-86334331 | None:intergenic |
| TTTGTGATATGTCAAAGGTT+TGG | 0.406110 | 3.1:+86336267 | MS.gene014764:CDS |
| GCAGTGGTTGTGGAATTTGC+AGG | 0.412763 | 3.1:+86335478 | MS.gene014764:CDS |
| GACAGCTCTTATGGATTGTA+TGG | 0.427608 | 3.1:-86336099 | None:intergenic |
| TGCATGTGCTCTTCATTTGA+GGG | 0.437426 | 3.1:-86334330 | None:intergenic |
| CAGTACCATTGCAGTGGTTG+TGG | 0.446831 | 3.1:+86335468 | MS.gene014764:CDS |
| TCCCCGCCATCAGGTCAAAC+AGG | 0.452846 | 3.1:+86334975 | MS.gene014764:CDS |
| TTTGTGCGACAAGATGAAAC+TGG | 0.460355 | 3.1:-86336787 | None:intergenic |
| AACGGTCACCCTTGCGTGGA+AGG | 0.469907 | 3.1:+86335898 | MS.gene014764:CDS |
| ATTGTTACCTCAAAACAAAC+AGG | 0.479044 | 3.1:-86335940 | None:intergenic |
| TTCAATTTGAGTGCAATGAC+AGG | 0.480009 | 3.1:+86334274 | MS.gene014764:CDS |
| TTAAGATATGGTTCAGGCAT+CGG | 0.481734 | 3.1:-86336320 | None:intergenic |
| TGCATTGCTCCTTCCACGCA+AGG | 0.486426 | 3.1:-86335907 | None:intergenic |
| AAACTGACTTTGAGCACAAA+GGG | 0.486545 | 3.1:-86336247 | None:intergenic |
| AGAGAGGATATATGGAGTAT+GGG | 0.487300 | 3.1:+86334406 | MS.gene014764:CDS |
| TACCTGTTTGACCTGATGGC+GGG | 0.493489 | 3.1:-86334977 | None:intergenic |
| TATCAATTGCGGTGTGTGCA+TGG | 0.500787 | 3.1:+86335392 | MS.gene014764:CDS |
| CCCTAATACGACACCTTCTC+CGG | 0.508236 | 3.1:-86334524 | None:intergenic |
| AACATACCTGTTTGACCTGA+TGG | 0.508780 | 3.1:-86334981 | None:intergenic |
| GTCAGTTTGTGATATGTCAA+AGG | 0.511690 | 3.1:+86336262 | MS.gene014764:CDS |
| ACACGACATTCCCCGCCATC+AGG | 0.513051 | 3.1:+86334966 | MS.gene014764:CDS |
| GATGTCAACATTACCGGAGA+AGG | 0.534230 | 3.1:+86334511 | MS.gene014764:intron |
| TGGATCCTTTGCAATGATTG+CGG | 0.546423 | 3.1:+86336749 | MS.gene014764:CDS |
| AGAGCTGTCTGAATGAAATG+AGG | 0.554066 | 3.1:+86336113 | MS.gene014764:CDS |
| TCAAATATCTCATTGCAACA+AGG | 0.556883 | 3.1:-86334549 | None:intergenic |
| ATCAATGACTTGCGAGAGAG+AGG | 0.557776 | 3.1:+86334390 | MS.gene014764:CDS |
| TTTCGCCGCAATCATTGCAA+AGG | 0.558309 | 3.1:-86336754 | None:intergenic |
| ACCTGTTTGACCTGATGGCG+GGG | 0.562153 | 3.1:-86334976 | None:intergenic |
| GCACTCAAATTGAAGAGGCT+CGG | 0.562219 | 3.1:-86334265 | None:intergenic |
| AGTGAGCATCATGGGAGAAG+TGG | 0.570618 | 3.1:+86334230 | None:intergenic |
| ATCAATTGCGGTGTGTGCAT+GGG | 0.579084 | 3.1:+86335393 | MS.gene014764:CDS |
| TCATTGCACTCAAATTGAAG+AGG | 0.591774 | 3.1:-86334270 | None:intergenic |
| CAAATATCTCATTGCAACAA+GGG | 0.593446 | 3.1:-86334548 | None:intergenic |
| GAGCTGTCTGAATGAAATGA+GGG | 0.595369 | 3.1:+86336114 | MS.gene014764:CDS |
| AAATTCCACAACCACTGCAA+TGG | 0.598547 | 3.1:-86335473 | None:intergenic |
| CAAACTGACTTTGAGCACAA+AGG | 0.599345 | 3.1:-86336248 | None:intergenic |
| TTCTTCCACTGCTACAAGTG+TGG | 0.601466 | 3.1:+86335746 | MS.gene014764:CDS |
| TCAAATGAAGAGCACATGCA+TGG | 0.607616 | 3.1:+86334333 | MS.gene014764:CDS |
| ACTTACCACACTTGTAGCAG+TGG | 0.608628 | 3.1:-86335751 | None:intergenic |
| AAATATCTCATTGCAACAAG+GGG | 0.613018 | 3.1:-86334547 | None:intergenic |
| ACTCTGTGAGACTGAACAAG+AGG | 0.613028 | 3.1:+86335117 | MS.gene014764:CDS |
| TATAACACAAGACAAACAAG+AGG | 0.622837 | 3.1:+86336830 | MS.gene014764:CDS |
| GCATTGCTCCTTCCACGCAA+GGG | 0.626467 | 3.1:-86335906 | None:intergenic |
| TTGTCGCCATTGTCACAATG+AGG | 0.627282 | 3.1:+86334572 | MS.gene014764:CDS |
| ATACCTGTTTGACCTGATGG+CGG | 0.637436 | 3.1:-86334978 | None:intergenic |
| CAGCAGAACTGTATCAATTG+CGG | 0.643368 | 3.1:+86335381 | MS.gene014764:CDS |
| CAATGACAGGAATCTTATCA+CGG | 0.652971 | 3.1:+86334287 | MS.gene014764:CDS |
| AAGCAGCAGTACCATTGCAG+TGG | 0.661184 | 3.1:+86335462 | MS.gene014764:CDS |
| TGTATGGCCGCAATGCAACA+CGG | 0.679908 | 3.1:-86336083 | None:intergenic |
| GATGTCTCCGTGTTGCATTG+CGG | 0.707696 | 3.1:+86336076 | MS.gene014764:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAAGTCAAAT+TGG | - | chr3.1:86336554-86336573 | None:intergenic | 10.0% |
| !! | ATATAAAATAAAGTCAAATT+GGG | - | chr3.1:86336553-86336572 | None:intergenic | 10.0% |
| !!! | ATTTGACTTTATTTTATATT+TGG | + | chr3.1:86336554-86336573 | MS.gene014764:intron | 10.0% |
| !! | TTCTAAATGATATAATGAAA+TGG | - | chr3.1:86335307-86335326 | None:intergenic | 15.0% |
| !!! | AAATCATTAATTTTTTACGA+TGG | - | chr3.1:86334483-86334502 | None:intergenic | 15.0% |
| !! | TACAATATAATCCTCATTTA+TGG | - | chr3.1:86334687-86334706 | None:intergenic | 20.0% |
| !! | TCTCAAAATTAATAACTGTT+TGG | - | chr3.1:86335240-86335259 | None:intergenic | 20.0% |
| !! | TGAACCATATCTTAATAAAA+TGG | + | chr3.1:86336328-86336347 | MS.gene014764:CDS | 20.0% |
| !! | TGTTATGAAATTACTTATGA+CGG | + | chr3.1:86335190-86335209 | MS.gene014764:intron | 20.0% |
| !!! | ATATGTTTTAAAAACAGAAC+TGG | + | chr3.1:86335710-86335729 | MS.gene014764:intron | 20.0% |
| !!! | ATTTTATTAAGATATGGTTC+AGG | - | chr3.1:86336329-86336348 | None:intergenic | 20.0% |
| !!! | CTTACCATTTTATTAAGATA+TGG | - | chr3.1:86336335-86336354 | None:intergenic | 20.0% |
| !!! | TTCATTATATCATTTAGAAC+TGG | + | chr3.1:86335308-86335327 | MS.gene014764:intron | 20.0% |
| !!! | TTTGTATTTGATTTTGTATC+AGG | + | chr3.1:86336216-86336235 | MS.gene014764:intron | 20.0% |
| ! | AAATAATGATCAATCCTGTT+TGG | - | chr3.1:86336636-86336655 | None:intergenic | 25.0% |
| ! | ACAAATCACTACAATTGAAA+TGG | - | chr3.1:86336189-86336208 | None:intergenic | 25.0% |
| ! | ACTTATGACTTAGAATGAAA+TGG | + | chr3.1:86334840-86334859 | MS.gene014764:intron | 25.0% |
| ! | AGATTGAAAAGCAAATAGTA+TGG | - | chr3.1:86334446-86334465 | None:intergenic | 25.0% |
| ! | ATAGAAATAGTCTATACACA+GGG | + | chr3.1:86336579-86336598 | MS.gene014764:intron | 25.0% |
| ! | CAAAATCAAATACAAAGTTC+AGG | - | chr3.1:86336212-86336231 | None:intergenic | 25.0% |
| ! | CAAAATTAATAACTGTTTGG+AGG | - | chr3.1:86335237-86335256 | None:intergenic | 25.0% |
| ! | CAAATTTCATAGACAACTTT+AGG | + | chr3.1:86334801-86334820 | MS.gene014764:intron | 25.0% |
| ! | CATAAATTCAACAAATTGAC+AGG | - | chr3.1:86335995-86336014 | None:intergenic | 25.0% |
| ! | GATTGAAAAGCAAATAGTAT+GGG | - | chr3.1:86334445-86334464 | None:intergenic | 25.0% |
| ! | TACTCAACTTTGTTGAAAAA+CGG | + | chr3.1:86335880-86335899 | MS.gene014764:CDS | 25.0% |
| ! | TATAGAAATAGTCTATACAC+AGG | + | chr3.1:86336578-86336597 | MS.gene014764:intron | 25.0% |
| ! | TCAATACAAACAAGTCTAAA+AGG | - | chr3.1:86336362-86336381 | None:intergenic | 25.0% |
| ! | TTAAAACTCTCGAATTTCTT+GGG | + | chr3.1:86334716-86334735 | MS.gene014764:intron | 25.0% |
| ! | TTTAGCTAACTTAACCAAAT+TGG | - | chr3.1:86335525-86335544 | None:intergenic | 25.0% |
| !!! | CAAATTGGTTAGCTTATTAT+CGG | - | chr3.1:86335510-86335529 | None:intergenic | 25.0% |
| !!! | CTGTCAATTTGTTGAATTTA+TGG | + | chr3.1:86335993-86336012 | MS.gene014764:intron | 25.0% |
| !!! | TAATTTTTTACGATGGCAAA+GGG | - | chr3.1:86334476-86334495 | None:intergenic | 25.0% |
| !!! | TCAATTTGTTGAATTTATGG+AGG | + | chr3.1:86335996-86336015 | MS.gene014764:intron | 25.0% |
| !!! | TTAATTTTTTACGATGGCAA+AGG | - | chr3.1:86334477-86334496 | None:intergenic | 25.0% |
| AAAATTGCAGATCTTCAATG+AGG | - | chr3.1:86335021-86335040 | None:intergenic | 30.0% | |
| AAATATCTCATTGCAACAAG+GGG | - | chr3.1:86334550-86334569 | None:intergenic | 30.0% | |
| AAGAAAAACAGTTATGAAGC+AGG | - | chr3.1:86335834-86335853 | None:intergenic | 30.0% | |
| AGAAAAAGTCATATCAACCT+TGG | - | chr3.1:86335579-86335598 | None:intergenic | 30.0% | |
| ATTGTTACCTCAAAACAAAC+AGG | - | chr3.1:86335943-86335962 | None:intergenic | 30.0% | |
| CAAATATCTCATTGCAACAA+GGG | - | chr3.1:86334551-86334570 | None:intergenic | 30.0% | |
| CGATAATAAGCTAACCAATT+TGG | + | chr3.1:86335508-86335527 | MS.gene014764:intron | 30.0% | |
| CTGTTCAGATATTTCATGTA+TGG | + | chr3.1:86334643-86334662 | MS.gene014764:intron | 30.0% | |
| GAAAAAGTCATATCAACCTT+GGG | - | chr3.1:86335578-86335597 | None:intergenic | 30.0% | |
| GAACATATCACCTGAAAAAT+TGG | - | chr3.1:86335097-86335116 | None:intergenic | 30.0% | |
| GCTTATCTCAGTTTATCTAT+TGG | - | chr3.1:86336517-86336536 | None:intergenic | 30.0% | |
| GTTAAAACTCTCGAATTTCT+TGG | + | chr3.1:86334715-86334734 | MS.gene014764:intron | 30.0% | |
| TATAACACAAGACAAACAAG+AGG | + | chr3.1:86336830-86336849 | MS.gene014764:CDS | 30.0% | |
| TCAAATATCTCATTGCAACA+AGG | - | chr3.1:86334552-86334571 | None:intergenic | 30.0% | |
| TCATCATGTACATAGTTGTA+TGG | - | chr3.1:86336678-86336697 | None:intergenic | 30.0% | |
| TCTTCATAACTTCTTTGCAT+AGG | + | chr3.1:86335850-86335869 | MS.gene014764:intron | 30.0% | |
| TTCAGATATTTCATGTATGG+TGG | + | chr3.1:86334646-86334665 | MS.gene014764:intron | 30.0% | |
| TTGTGATATGTCAAAGGTTT+GGG | + | chr3.1:86336268-86336287 | MS.gene014764:CDS | 30.0% | |
| TTTGTGATATGTCAAAGGTT+TGG | + | chr3.1:86336267-86336286 | MS.gene014764:CDS | 30.0% | |
| ! | AATGAATGCTCCAATTTTTC+AGG | + | chr3.1:86335084-86335103 | MS.gene014764:intron | 30.0% |
| !!! | AGACTTTAGTGCACTTTTTT+TGG | + | chr3.1:86335659-86335678 | MS.gene014764:intron | 30.0% |
| !!! | ATTAAGCTGTTTTTCCAAAC+AGG | + | chr3.1:86336619-86336638 | MS.gene014764:intron | 30.0% |
| !!! | CTGTTGTTATTTTTCTGATG+AGG | + | chr3.1:86335054-86335073 | MS.gene014764:intron | 30.0% |
| !!! | GTTTTAAAAACAGAACTGGA+GGG | + | chr3.1:86335714-86335733 | MS.gene014764:intron | 30.0% |
| !!! | TCTTGTTTTTCCTTTTCTCT+TGG | + | chr3.1:86335598-86335617 | MS.gene014764:intron | 30.0% |
| !!! | TGTTTTAAAAACAGAACTGG+AGG | + | chr3.1:86335713-86335732 | MS.gene014764:intron | 30.0% |
| AAAGTCAAATTGGGTCTCTT+TGG | - | chr3.1:86336544-86336563 | None:intergenic | 35.0% | |
| AATACTGCGATCACCAATTT+CGG | - | chr3.1:86336039-86336058 | None:intergenic | 35.0% | |
| AGAGAGGATATATGGAGTAT+GGG | + | chr3.1:86334406-86334425 | MS.gene014764:CDS | 35.0% | |
| CAATGACAGGAATCTTATCA+CGG | + | chr3.1:86334287-86334306 | MS.gene014764:CDS | 35.0% | |
| CACAGTCTAGTATTTCATGA+TGG | + | chr3.1:86334612-86334631 | MS.gene014764:intron | 35.0% | |
| CATAACTACACTACCGAAAT+TGG | + | chr3.1:86336023-86336042 | MS.gene014764:intron | 35.0% | |
| CTTATTGCTTGCCATAAATG+AGG | + | chr3.1:86334673-86334692 | MS.gene014764:intron | 35.0% | |
| GGTTTGGGAAAAAATTGACT+TGG | + | chr3.1:86336283-86336302 | MS.gene014764:CDS | 35.0% | |
| GTCAGTTTGTGATATGTCAA+AGG | + | chr3.1:86336262-86336281 | MS.gene014764:CDS | 35.0% | |
| TCATTGCACTCAAATTGAAG+AGG | - | chr3.1:86334273-86334292 | None:intergenic | 35.0% | |
| TCTGTAGATGTCAACATTAC+CGG | + | chr3.1:86334505-86334524 | MS.gene014764:intron | 35.0% | |
| TTAAGATATGGTTCAGGCAT+CGG | - | chr3.1:86336323-86336342 | None:intergenic | 35.0% | |
| TTCAATTTGAGTGCAATGAC+AGG | + | chr3.1:86334274-86334293 | MS.gene014764:CDS | 35.0% | |
| TTTCATTCAGACAGCTCTTA+TGG | - | chr3.1:86336111-86336130 | None:intergenic | 35.0% | |
| ! | AAACTGACTTTGAGCACAAA+GGG | - | chr3.1:86336250-86336269 | None:intergenic | 35.0% |
| ! | ATTTTGTTCATATGCCATCG+TGG | + | chr3.1:86336652-86336671 | MS.gene014764:intron | 35.0% |
| ! | GCAAGTCATTGATCTTTTTG+TGG | - | chr3.1:86334383-86334402 | None:intergenic | 35.0% |
| ! | TCATTGATCTTTTTGTGGTC+TGG | - | chr3.1:86334378-86334397 | None:intergenic | 35.0% |
| ! | TGTTGCTTAACCAAGAGAAA+AGG | - | chr3.1:86335611-86335630 | None:intergenic | 35.0% |
| !! | GGAAAAAATTGACTTGGAAC+TGG | + | chr3.1:86336289-86336308 | MS.gene014764:CDS | 35.0% |
| !!! | AGATTGTCCTGTTTGTTTTG+AGG | + | chr3.1:86335933-86335952 | MS.gene014764:CDS | 35.0% |
| !!! | TGCATGGGCAATTATTTTTG+CGG | + | chr3.1:86335408-86335427 | MS.gene014764:CDS | 35.0% |
| AAATTCCACAACCACTGCAA+TGG | - | chr3.1:86335476-86335495 | None:intergenic | 40.0% | |
| AACATACCTGTTTGACCTGA+TGG | - | chr3.1:86334984-86335003 | None:intergenic | 40.0% | |
| AATGTATTGTCCCTATCCCA+AGG | + | chr3.1:86335559-86335578 | MS.gene014764:intron | 40.0% | |
| AGAGCTGTCTGAATGAAATG+AGG | + | chr3.1:86336113-86336132 | MS.gene014764:CDS | 40.0% | |
| AGTCATATCAACCTTGGGAT+AGG | - | chr3.1:86335573-86335592 | None:intergenic | 40.0% | |
| ATGCATGTGCTCTTCATTTG+AGG | - | chr3.1:86334334-86334353 | None:intergenic | 40.0% | |
| ATTGCAGATCTTCAATGAGG+TGG | - | chr3.1:86335018-86335037 | None:intergenic | 40.0% | |
| ATTTGATGCACTCTCTTGAC+AGG | + | chr3.1:86336724-86336743 | MS.gene014764:intron | 40.0% | |
| CAAATTGGGTCTCTTTGGAT+TGG | - | chr3.1:86336539-86336558 | None:intergenic | 40.0% | |
| CAGCAGAACTGTATCAATTG+CGG | + | chr3.1:86335381-86335400 | MS.gene014764:CDS | 40.0% | |
| GAGAGAGGATATATGGAGTA+TGG | + | chr3.1:86334405-86334424 | MS.gene014764:CDS | 40.0% | |
| GAGCTGTCTGAATGAAATGA+GGG | + | chr3.1:86336114-86336133 | MS.gene014764:CDS | 40.0% | |
| GTCATATCAACCTTGGGATA+GGG | - | chr3.1:86335572-86335591 | None:intergenic | 40.0% | |
| TGCATGTGCTCTTCATTTGA+GGG | - | chr3.1:86334333-86334352 | None:intergenic | 40.0% | |
| TGGATCCTTTGCAATGATTG+CGG | + | chr3.1:86336749-86336768 | MS.gene014764:CDS | 40.0% | |
| TTTGTGCGACAAGATGAAAC+TGG | - | chr3.1:86336790-86336809 | None:intergenic | 40.0% | |
| ! | CAAACTGACTTTGAGCACAA+AGG | - | chr3.1:86336251-86336270 | None:intergenic | 40.0% |
| ! | CAAGAGAGTGCATCAAATCT+TGG | - | chr3.1:86336722-86336741 | None:intergenic | 40.0% |
| ! | CTGCAGCATCACTTTCATTT+TGG | + | chr3.1:86334886-86334905 | MS.gene014764:intron | 40.0% |
| ! | CTTTTGCCTCATTGTGACAA+TGG | - | chr3.1:86334581-86334600 | None:intergenic | 40.0% |
| ! | GACAGCTCTTATGGATTGTA+TGG | - | chr3.1:86336102-86336121 | None:intergenic | 40.0% |
| ! | TCAAATGAAGAGCACATGCA+TGG | + | chr3.1:86334333-86334352 | MS.gene014764:CDS | 40.0% |
| ! | TCTTTTTGTGGTCTGGTGAT+TGG | - | chr3.1:86334371-86334390 | None:intergenic | 40.0% |
| !!! | GCATGGGCAATTATTTTTGC+GGG | + | chr3.1:86335409-86335428 | MS.gene014764:CDS | 40.0% |
| ACATAGTTGTATGGCCACGA+TGG | - | chr3.1:86336669-86336688 | None:intergenic | 45.0% | |
| ACTCTGTGAGACTGAACAAG+AGG | + | chr3.1:86335117-86335136 | MS.gene014764:CDS | 45.0% | |
| ACTTACCACACTTGTAGCAG+TGG | - | chr3.1:86335754-86335773 | None:intergenic | 45.0% | |
| ATACCTGTTTGACCTGATGG+CGG | - | chr3.1:86334981-86335000 | None:intergenic | 45.0% | |
| ATCAATTGCGGTGTGTGCAT+GGG | + | chr3.1:86335393-86335412 | MS.gene014764:CDS | 45.0% | |
| ATGCACTCTCTTGACAGGTT+TGG | + | chr3.1:86336729-86336748 | MS.gene014764:intron | 45.0% | |
| CCTGGAAGCAGAAGATATCA+AGG | - | chr3.1:86335359-86335378 | None:intergenic | 45.0% | |
| CCTTGATATCTTCTGCTTCC+AGG | + | chr3.1:86335356-86335375 | MS.gene014764:intron | 45.0% | |
| CTTGCGAGAGAGAGGATATA+TGG | + | chr3.1:86334398-86334417 | MS.gene014764:CDS | 45.0% | |
| GATGTCAACATTACCGGAGA+AGG | + | chr3.1:86334511-86334530 | MS.gene014764:intron | 45.0% | |
| GCACTCAAATTGAAGAGGCT+CGG | - | chr3.1:86334268-86334287 | None:intergenic | 45.0% | |
| TATCAATTGCGGTGTGTGCA+TGG | + | chr3.1:86335392-86335411 | MS.gene014764:CDS | 45.0% | |
| TGATACAGTTCTGCTGAACC+TGG | - | chr3.1:86335377-86335396 | None:intergenic | 45.0% | |
| TTCTTCCACTGCTACAAGTG+TGG | + | chr3.1:86335746-86335765 | MS.gene014764:CDS | 45.0% | |
| TTGTCGCCATTGTCACAATG+AGG | + | chr3.1:86334572-86334591 | MS.gene014764:CDS | 45.0% | |
| TTTCGCCGCAATCATTGCAA+AGG | - | chr3.1:86336757-86336776 | None:intergenic | 45.0% | |
| ! | ATCAATGACTTGCGAGAGAG+AGG | + | chr3.1:86334390-86334409 | MS.gene014764:CDS | 45.0% |
| AAGCAGCAGTACCATTGCAG+TGG | + | chr3.1:86335462-86335481 | MS.gene014764:CDS | 50.0% | |
| CAGTACCATTGCAGTGGTTG+TGG | + | chr3.1:86335468-86335487 | MS.gene014764:CDS | 50.0% | |
| CCCTAATACGACACCTTCTC+CGG | - | chr3.1:86334527-86334546 | None:intergenic | 50.0% | |
| GATGTCTCCGTGTTGCATTG+CGG | + | chr3.1:86336076-86336095 | MS.gene014764:CDS | 50.0% | |
| GCAGTGGTTGTGGAATTTGC+AGG | + | chr3.1:86335478-86335497 | MS.gene014764:CDS | 50.0% | |
| TACCTGTTTGACCTGATGGC+GGG | - | chr3.1:86334980-86334999 | None:intergenic | 50.0% | |
| TGTATGGCCGCAATGCAACA+CGG | - | chr3.1:86336086-86336105 | None:intergenic | 50.0% | |
| !! | ACCGGAGAAGGTGTCGTATT+AGG | + | chr3.1:86334523-86334542 | MS.gene014764:CDS | 50.0% |
| !! | CCGGAGAAGGTGTCGTATTA+GGG | + | chr3.1:86334524-86334543 | MS.gene014764:CDS | 50.0% |
| GAAAAACGGTCACCCTTGCG+TGG | + | chr3.1:86335894-86335913 | MS.gene014764:CDS | 55.0% | |
| GCATTGCTCCTTCCACGCAA+GGG | - | chr3.1:86335909-86335928 | None:intergenic | 55.0% | |
| TGCATTGCTCCTTCCACGCA+AGG | - | chr3.1:86335910-86335929 | None:intergenic | 55.0% | |
| ! | ACCTGTTTGACCTGATGGCG+GGG | - | chr3.1:86334979-86334998 | None:intergenic | 55.0% |
| AACGGTCACCCTTGCGTGGA+AGG | + | chr3.1:86335898-86335917 | MS.gene014764:CDS | 60.0% | |
| ACACGACATTCCCCGCCATC+AGG | + | chr3.1:86334966-86334985 | MS.gene014764:CDS | 60.0% | |
| TCCCCGCCATCAGGTCAAAC+AGG | + | chr3.1:86334975-86334994 | MS.gene014764:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86334240 | 86336856 | 86334240 | ID=MS.gene014764 |
| chr3.1 | mRNA | 86334240 | 86336856 | 86334240 | ID=MS.gene014764.t1;Parent=MS.gene014764 |
| chr3.1 | exon | 86334240 | 86334427 | 86334240 | ID=MS.gene014764.t1.exon1;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86334240 | 86334427 | 86334240 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86334512 | 86334599 | 86334512 | ID=MS.gene014764.t1.exon2;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86334512 | 86334599 | 86334512 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86334937 | 86334996 | 86334937 | ID=MS.gene014764.t1.exon3;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86334937 | 86334996 | 86334937 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86335106 | 86335138 | 86335106 | ID=MS.gene014764.t1.exon4;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86335106 | 86335138 | 86335106 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86335378 | 86335499 | 86335378 | ID=MS.gene014764.t1.exon5;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86335378 | 86335499 | 86335378 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86335727 | 86335767 | 86335727 | ID=MS.gene014764.t1.exon6;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86335727 | 86335767 | 86335727 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86335872 | 86335954 | 86335872 | ID=MS.gene014764.t1.exon7;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86335872 | 86335954 | 86335872 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86336055 | 86336146 | 86336055 | ID=MS.gene014764.t1.exon8;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86336055 | 86336146 | 86336055 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86336238 | 86336349 | 86336238 | ID=MS.gene014764.t1.exon9;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86336238 | 86336349 | 86336238 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| chr3.1 | exon | 86336746 | 86336856 | 86336746 | ID=MS.gene014764.t1.exon10;Parent=MS.gene014764.t1 |
| chr3.1 | CDS | 86336746 | 86336856 | 86336746 | ID=cds.MS.gene014764.t1;Parent=MS.gene014764.t1 |
| Gene Sequence |
| Protein sequence |
