Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015443.t1 | XP_003611291.1 | 99.7 | 350 | 1 | 0 | 1 | 350 | 1 | 350 | 3.40E-193 | 684.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015443.t1 | P22988 | 66.6 | 350 | 109 | 3 | 1 | 343 | 1 | 349 | 3.1e-126 | 453.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015443.t1 | G7JW16 | 99.7 | 350 | 1 | 0 | 1 | 350 | 1 | 350 | 2.5e-193 | 684.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36022 | MS.gene015443 | PPI |
| MS.gene007924 | MS.gene015443 | PPI |
| MS.gene40108 | MS.gene015443 | PPI |
| MS.gene015443 | MS.gene21451 | PPI |
| MS.gene059657 | MS.gene015443 | PPI |
| MS.gene028531 | MS.gene015443 | PPI |
| MS.gene053632 | MS.gene015443 | PPI |
| MS.gene015298 | MS.gene015443 | PPI |
| MS.gene09641 | MS.gene015443 | PPI |
| MS.gene34257 | MS.gene015443 | PPI |
| MS.gene21450 | MS.gene015443 | PPI |
| MS.gene015443 | MS.gene032254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015443.t1 | MTR_5g012390 | 99.714 | 350 | 1 | 0 | 1 | 350 | 1 | 350 | 0.0 | 715 |
| MS.gene015443.t1 | MTR_4g101130 | 86.000 | 350 | 49 | 0 | 1 | 350 | 1 | 350 | 0.0 | 618 |
| MS.gene015443.t1 | MTR_4g092690 | 24.514 | 257 | 161 | 10 | 39 | 281 | 46 | 283 | 4.79e-12 | 66.6 |
| MS.gene015443.t1 | MTR_5g014710 | 24.710 | 259 | 160 | 11 | 39 | 282 | 48 | 286 | 7.51e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015443.t1 | AT4G17260 | 77.054 | 353 | 78 | 1 | 1 | 350 | 1 | 353 | 0.0 | 548 |
| MS.gene015443.t1 | AT2G22780 | 24.809 | 262 | 162 | 11 | 39 | 285 | 44 | 285 | 1.73e-11 | 65.1 |
Find 99 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGGTTCAGGAACTAATT+TGG | 0.183798 | 5.4:-6433596 | MS.gene015443:CDS |
| GCTGGGGCTCGCCAGATTAA+TGG | 0.260199 | 5.4:-6433784 | MS.gene015443:CDS |
| GACCTCTGCATCGTCACTGC+TGG | 0.269339 | 5.4:-6433802 | MS.gene015443:CDS |
| TATGAAGTGATCAGTTTAAA+AGG | 0.279837 | 5.4:-6432695 | MS.gene015443:CDS |
| GTTTAAAAGGCTACACTTCT+TGG | 0.287297 | 5.4:-6432682 | MS.gene015443:CDS |
| AGGGTACTCCGTCGCAAATT+TGG | 0.306009 | 5.4:-6432654 | MS.gene015443:CDS |
| TTCCCGTCCAACCGCGTCAT+TGG | 0.330121 | 5.4:-6433613 | MS.gene015443:CDS |
| ACCTCTGCATCGTCACTGCT+GGG | 0.330491 | 5.4:-6433801 | MS.gene015443:CDS |
| CCCTTTGCAAGTACTGAAAC+AGG | 0.335982 | 5.4:+6432596 | None:intergenic |
| ATACACAAAGAGGTTATAAA+TGG | 0.340001 | 5.4:-6432722 | MS.gene015443:CDS |
| CATCAAGATGATCAGCAATA+AGG | 0.342388 | 5.4:+6433554 | None:intergenic |
| TCCAACCGCGTCATTGGTTC+AGG | 0.352421 | 5.4:-6433607 | MS.gene015443:CDS |
| ATCATTGGGACCAGATGGTT+TGG | 0.365992 | 5.4:-6434097 | MS.gene015443:CDS |
| AAAATGCACAAAAGCATATC+AGG | 0.366781 | 5.4:-6434123 | MS.gene015443:CDS |
| CTTGGTAGAGGAGGTGTATT+GGG | 0.368641 | 5.4:-6432524 | MS.gene015443:CDS |
| AAGAGGAAATGAAGAGGCTT+AGG | 0.376841 | 5.4:-6432478 | MS.gene015443:CDS |
| CCTTTGTAGCAAATTCAATC+TGG | 0.377803 | 5.4:+6433756 | None:intergenic |
| ATCTGGACTCGCCATTAATC+TGG | 0.381187 | 5.4:+6433773 | None:intergenic |
| CACAACAAGATCTCAGTTAT+CGG | 0.387966 | 5.4:-6434012 | MS.gene015443:CDS |
| ATCTCGCCTCGTAGCTTGTC+AGG | 0.414108 | 5.4:+6433907 | None:intergenic |
| CTGAATAGTCCGTGGAGGCC+TGG | 0.419596 | 5.4:+6433839 | None:intergenic |
| TTTAAAAGGCTACACTTCTT+GGG | 0.420092 | 5.4:-6432681 | MS.gene015443:CDS |
| TACATTGCTTGGAAACTCTC+TGG | 0.433042 | 5.4:-6433637 | MS.gene015443:CDS |
| AAGCATATCAGGTTCATCAT+TGG | 0.435410 | 5.4:-6434112 | MS.gene015443:CDS |
| CATATTGTAGGCATACATAG+TGG | 0.443302 | 5.4:-6432861 | MS.gene015443:intron |
| ATGTGCTCACTTACATTGCT+TGG | 0.446335 | 5.4:-6433648 | MS.gene015443:CDS |
| AGCATATCAGGTTCATCATT+GGG | 0.449605 | 5.4:-6434111 | MS.gene015443:CDS |
| ATTTGGCTCGAACAATTATG+AGG | 0.456393 | 5.4:-6432637 | MS.gene015443:CDS |
| GCTTGGTAGAGGAGGTGTAT+TGG | 0.456494 | 5.4:-6432525 | MS.gene015443:CDS |
| ATGTAAGTGAGCACATCAAC+AGG | 0.458914 | 5.4:+6433655 | None:intergenic |
| AACCAATGACGCGGTTGGAC+GGG | 0.459051 | 5.4:+6433611 | None:intergenic |
| CAAGAACAAGCTCGTCGACT+AGG | 0.461803 | 5.4:+6433941 | None:intergenic |
| TCTTGAGTTGCAGAATCAGT+TGG | 0.461924 | 5.4:-6432438 | MS.gene015443:CDS |
| CGGCGCAGGCAACGTGGGAA+TGG | 0.466696 | 5.4:-6433992 | MS.gene015443:CDS |
| GACTAGGTCTTGTGTTAAGA+TGG | 0.470120 | 5.4:+6433957 | None:intergenic |
| CAAGCTACGAGGCGAGATGC+TGG | 0.472234 | 5.4:-6433902 | MS.gene015443:CDS |
| CTTGAGTTGCAGAATCAGTT+GGG | 0.475495 | 5.4:-6432437 | MS.gene015443:CDS |
| TGAGTTAAGTCCAAACCATC+TGG | 0.477368 | 5.4:+6434087 | None:intergenic |
| TTGTGGCGTTTCGTTGGAGA+AGG | 0.483904 | 5.4:+6434030 | None:intergenic |
| GGAGGCCTGGATCTTAGTGC+GGG | 0.491437 | 5.4:+6433852 | None:intergenic |
| CCCTGTTTCAGTACTTGCAA+AGG | 0.493370 | 5.4:-6432597 | MS.gene015443:CDS |
| GTGACAGTTCAGTGGCACTA+TGG | 0.496963 | 5.4:-6432829 | MS.gene015443:CDS |
| TTGCCTGCACAGCTTGGTAG+AGG | 0.498243 | 5.4:-6432536 | MS.gene015443:CDS |
| CCTCCTCTACCAAGCTGTGC+AGG | 0.499160 | 5.4:+6432533 | None:intergenic |
| GAGAAGGAGGTGAGGCATGT+TGG | 0.500290 | 5.4:+6434046 | None:intergenic |
| GCCTCGTAGCTTGTCAGGAA+TGG | 0.502021 | 5.4:+6433912 | None:intergenic |
| ATCTTGTTGTGGCGTTTCGT+TGG | 0.512022 | 5.4:+6434024 | None:intergenic |
| CCTGTTTCAGTACTTGCAAA+GGG | 0.514853 | 5.4:-6432596 | MS.gene015443:CDS |
| AGAGGAAATGAAGAGGCTTA+GGG | 0.518669 | 5.4:-6432477 | MS.gene015443:CDS |
| GAACCAATGACGCGGTTGGA+CGG | 0.521693 | 5.4:+6433610 | None:intergenic |
| CCAGATTGAATTTGCTACAA+AGG | 0.522205 | 5.4:-6433756 | MS.gene015443:CDS |
| GGCTACACTTCTTGGGCCAT+AGG | 0.526002 | 5.4:-6432674 | MS.gene015443:CDS |
| AGTGAGCACATCAACAGGAT+TGG | 0.527203 | 5.4:+6433660 | None:intergenic |
| ATATTGTAGGCATACATAGT+GGG | 0.528803 | 5.4:-6432860 | MS.gene015443:intron |
| GATGATCAGCAATAAGGAAA+CGG | 0.530476 | 5.4:+6433560 | None:intergenic |
| TCCTGAACCAATGACGCGGT+TGG | 0.532757 | 5.4:+6433606 | None:intergenic |
| CCTGCACAGCTTGGTAGAGG+AGG | 0.533540 | 5.4:-6432533 | MS.gene015443:CDS |
| AGGAGGTGAGGCATGTTGGA+TGG | 0.541391 | 5.4:+6434050 | None:intergenic |
| TGGTCAAGCATTAGTGTTGG+AGG | 0.542005 | 5.4:-6432809 | MS.gene015443:CDS |
| ATTAGTTTGCCTGCACAGCT+TGG | 0.543386 | 5.4:-6432542 | MS.gene015443:CDS |
| GCTACACTTCTTGGGCCATA+GGG | 0.551111 | 5.4:-6432673 | MS.gene015443:CDS |
| GGTTCATCATTGGGACCAGA+TGG | 0.553995 | 5.4:-6434102 | MS.gene015443:CDS |
| TGGCGTTTCGTTGGAGAAGG+AGG | 0.556154 | 5.4:+6434033 | None:intergenic |
| ATTTGCGACGGAGTACCCTA+TGG | 0.561442 | 5.4:+6432658 | None:intergenic |
| ATGTTGGATGGACTTGAAGA+AGG | 0.565700 | 5.4:+6434062 | None:intergenic |
| CACTAAGATCCAGGCCTCCA+CGG | 0.566976 | 5.4:-6433848 | MS.gene015443:CDS |
| AAGATCTCAGTTATCGGCGC+AGG | 0.570093 | 5.4:-6434006 | MS.gene015443:CDS |
| GAACAATTATGAGGAATCAA+AGG | 0.573740 | 5.4:-6432628 | MS.gene015443:CDS |
| ACGGACTATTCAGTGACGAT+GGG | 0.573834 | 5.4:-6433829 | MS.gene015443:CDS |
| GCTAGAGAACATACACAAAG+AGG | 0.577375 | 5.4:-6432732 | MS.gene015443:CDS |
| TAATATTCATATGACTGAAG+AGG | 0.582508 | 5.4:-6432495 | MS.gene015443:CDS |
| CTATGGTCAAGCATTAGTGT+TGG | 0.582886 | 5.4:-6432812 | MS.gene015443:CDS |
| TGTTAATGCTCAAGATGTGC+AGG | 0.582927 | 5.4:-6433533 | MS.gene015443:intron |
| CACGGACTATTCAGTGACGA+TGG | 0.583882 | 5.4:-6433830 | MS.gene015443:CDS |
| CCCCAGCAGTGACGATGCAG+AGG | 0.586925 | 5.4:+6433800 | None:intergenic |
| GTTATCGGCGCAGGCAACGT+GGG | 0.604202 | 5.4:-6433997 | MS.gene015443:CDS |
| TGGAGGCCTGGATCTTAGTG+CGG | 0.606000 | 5.4:+6433851 | None:intergenic |
| CCTCTGCATCGTCACTGCTG+GGG | 0.608669 | 5.4:-6433800 | MS.gene015443:CDS |
| TATTGTAGGCATACATAGTG+GGG | 0.617018 | 5.4:-6432859 | MS.gene015443:intron |
| GAGGCCTGGATCTTAGTGCG+GGG | 0.617664 | 5.4:+6433853 | None:intergenic |
| AGTTATCGGCGCAGGCAACG+TGG | 0.623394 | 5.4:-6433998 | MS.gene015443:CDS |
| AGGCCTGGATCTTAGTGCGG+GGG | 0.630067 | 5.4:+6433854 | None:intergenic |
| TGACTGAAGAGGAAATGAAG+AGG | 0.635441 | 5.4:-6432484 | MS.gene015443:CDS |
| GGAACATGGTGACAGTTCAG+TGG | 0.640556 | 5.4:-6432837 | MS.gene015443:CDS |
| ACAATTAGAAGAACACAATG+AGG | 0.641975 | 5.4:+6433685 | None:intergenic |
| TGTTCGAGCCAAATTTGCGA+CGG | 0.645980 | 5.4:+6432646 | None:intergenic |
| TGAGGAGAGTAACGAACCAA+AGG | 0.646562 | 5.4:+6433703 | None:intergenic |
| CGATAACTGAGATCTTGTTG+TGG | 0.649606 | 5.4:+6434013 | None:intergenic |
| GGAGAGTAACGAACCAAAGG+TGG | 0.659475 | 5.4:+6433706 | None:intergenic |
| AATAAGGAAACGGAAGCGAG+AGG | 0.662348 | 5.4:+6433570 | None:intergenic |
| CCTTTGCAAGTACTGAAACA+GGG | 0.664039 | 5.4:+6432597 | None:intergenic |
| CATCGTCACTGAATAGTCCG+TGG | 0.664896 | 5.4:+6433831 | None:intergenic |
| TTTCGTTGGAGAAGGAGGTG+AGG | 0.681321 | 5.4:+6434038 | None:intergenic |
| ATTGTAGGCATACATAGTGG+GGG | 0.689959 | 5.4:-6432858 | MS.gene015443:intron |
| CGGACTATTCAGTGACGATG+GGG | 0.708696 | 5.4:-6433828 | MS.gene015443:CDS |
| GATGCTGGATCTACAGCACG+CGG | 0.713694 | 5.4:-6433887 | MS.gene015443:CDS |
| ACCATTCCTGACAAGCTACG+AGG | 0.715464 | 5.4:-6433913 | MS.gene015443:CDS |
| CGTCACTGAATAGTCCGTGG+AGG | 0.718203 | 5.4:+6433834 | None:intergenic |
| TAGTTCCTGAACCAATGACG+CGG | 0.731349 | 5.4:+6433602 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTTTAAGCAATA+AGG | + | chr5.4:6433055-6433074 | None:intergenic | 10.0% |
| !! | AAAATATATATCGTCGATAT+TGG | - | chr5.4:6433065-6433084 | MS.gene015443:intron | 20.0% |
| !! | AAATATATATCGTCGATATT+GGG | - | chr5.4:6433066-6433085 | MS.gene015443:intron | 20.0% |
| !! | TAAAAAAATTATACCACCTT+TGG | - | chr5.4:6432831-6432850 | MS.gene015443:CDS | 20.0% |
| !!! | TCAGTTTAATTTCATATTGT+AGG | - | chr5.4:6433677-6433696 | MS.gene015443:CDS | 20.0% |
| ! | ATACACAAAGAGGTTATAAA+TGG | - | chr5.4:6433828-6433847 | MS.gene015443:CDS | 25.0% |
| ! | CATGATAAGAGTTTATATAG+AGG | - | chr5.4:6433123-6433142 | MS.gene015443:intron | 25.0% |
| ! | TAATATTCATATGACTGAAG+AGG | - | chr5.4:6434055-6434074 | MS.gene015443:CDS | 25.0% |
| ! | TATGAAGTGATCAGTTTAAA+AGG | - | chr5.4:6433855-6433874 | MS.gene015443:CDS | 25.0% |
| !!! | TAGTGAGTTTGCTAAAATTA+CGG | + | chr5.4:6433563-6433582 | None:intergenic | 25.0% |
| ACAATTAGAAGAACACAATG+AGG | + | chr5.4:6432868-6432887 | None:intergenic | 30.0% | |
| ATATTGTAGGCATACATAGT+GGG | - | chr5.4:6433690-6433709 | MS.gene015443:CDS | 30.0% | |
| GAACAATTATGAGGAATCAA+AGG | - | chr5.4:6433922-6433941 | MS.gene015443:CDS | 30.0% | |
| GATAAGAGTTTATATAGAGG+AGG | - | chr5.4:6433126-6433145 | MS.gene015443:intron | 30.0% | |
| TGATACCATGTTGAAATATG+AGG | + | chr5.4:6433194-6433213 | None:intergenic | 30.0% | |
| TTTAAAAGGCTACACTTCTT+GGG | - | chr5.4:6433869-6433888 | MS.gene015443:CDS | 30.0% | |
| ! | TTGCTATTACATTGCATGTT+TGG | + | chr5.4:6433591-6433610 | None:intergenic | 30.0% |
| ! | TTGGTAATTAAGGATGAGTT+AGG | - | chr5.4:6433446-6433465 | MS.gene015443:intron | 30.0% |
| AAGCATATCAGGTTCATCAT+TGG | - | chr5.4:6432438-6432457 | MS.gene015443:CDS | 35.0% | |
| AGCATATCAGGTTCATCATT+GGG | - | chr5.4:6432439-6432458 | MS.gene015443:CDS | 35.0% | |
| ATCAGAGCTTGTCAAATTCA+AGG | - | chr5.4:6433210-6433229 | MS.gene015443:intron | 35.0% | |
| CACAACAAGATCTCAGTTAT+CGG | - | chr5.4:6432538-6432557 | MS.gene015443:CDS | 35.0% | |
| CATATTGTAGGCATACATAG+TGG | - | chr5.4:6433689-6433708 | MS.gene015443:CDS | 35.0% | |
| CATCAAGATGATCAGCAATA+AGG | + | chr5.4:6432999-6433018 | None:intergenic | 35.0% | |
| CCTTTGTAGCAAATTCAATC+TGG | + | chr5.4:6432797-6432816 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr5.4:6433170-6433189 | None:intergenic | 35.0% | |
| GATGATCAGCAATAAGGAAA+CGG | + | chr5.4:6432993-6433012 | None:intergenic | 35.0% | |
| GTTTAAAAGGCTACACTTCT+TGG | - | chr5.4:6433868-6433887 | MS.gene015443:CDS | 35.0% | |
| TATTGTAGGCATACATAGTG+GGG | - | chr5.4:6433691-6433710 | MS.gene015443:CDS | 35.0% | |
| TCAGAGCTTGTCAAATTCAA+GGG | - | chr5.4:6433211-6433230 | MS.gene015443:intron | 35.0% | |
| TGATCGACTGTTGAAATATG+AGG | + | chr5.4:6433401-6433420 | None:intergenic | 35.0% | |
| TTAGGCCTCATATTTCAACA+TGG | - | chr5.4:6433186-6433205 | MS.gene015443:intron | 35.0% | |
| ! | ATTTGGCTCGAACAATTATG+AGG | - | chr5.4:6433913-6433932 | MS.gene015443:CDS | 35.0% |
| ! | GTACTTGCAAAGGGATTTTA+TGG | - | chr5.4:6433963-6433982 | MS.gene015443:CDS | 35.0% |
| ! | TAAAATTACGGCTGCGATTT+TGG | + | chr5.4:6433551-6433570 | None:intergenic | 35.0% |
| !! | AAGGGATTTTATGGCATTGA+TGG | - | chr5.4:6433972-6433991 | MS.gene015443:CDS | 35.0% |
| !! | CATTGGTTCAGGAACTAATT+TGG | - | chr5.4:6432954-6432973 | MS.gene015443:intron | 35.0% |
| !! | CCAGATTGAATTTGCTACAA+AGG | - | chr5.4:6432794-6432813 | MS.gene015443:CDS | 35.0% |
| AAGAGGAAATGAAGAGGCTT+AGG | - | chr5.4:6434072-6434091 | MS.gene015443:CDS | 40.0% | |
| AGAGGAAATGAAGAGGCTTA+GGG | - | chr5.4:6434073-6434092 | MS.gene015443:CDS | 40.0% | |
| ATGTAAGTGAGCACATCAAC+AGG | + | chr5.4:6432898-6432917 | None:intergenic | 40.0% | |
| ATGTGCTCACTTACATTGCT+TGG | - | chr5.4:6432902-6432921 | MS.gene015443:intron | 40.0% | |
| ATTGTAGGCATACATAGTGG+GGG | - | chr5.4:6433692-6433711 | MS.gene015443:CDS | 40.0% | |
| CCTGTTTCAGTACTTGCAAA+GGG | - | chr5.4:6433954-6433973 | MS.gene015443:CDS | 40.0% | |
| CGATAACTGAGATCTTGTTG+TGG | + | chr5.4:6432540-6432559 | None:intergenic | 40.0% | |
| CTATGGTCAAGCATTAGTGT+TGG | - | chr5.4:6433738-6433757 | MS.gene015443:CDS | 40.0% | |
| GAGTCATATCTATCCGATGT+GGG | + | chr5.4:6433104-6433123 | None:intergenic | 40.0% | |
| GCTAGAGAACATACACAAAG+AGG | - | chr5.4:6433818-6433837 | MS.gene015443:CDS | 40.0% | |
| TACATTGCTTGGAAACTCTC+TGG | - | chr5.4:6432913-6432932 | MS.gene015443:intron | 40.0% | |
| TGACTGAAGAGGAAATGAAG+AGG | - | chr5.4:6434066-6434085 | MS.gene015443:CDS | 40.0% | |
| TGAGTCATATCTATCCGATG+TGG | + | chr5.4:6433105-6433124 | None:intergenic | 40.0% | |
| TGAGTTAAGTCCAAACCATC+TGG | + | chr5.4:6432466-6432485 | None:intergenic | 40.0% | |
| TGTTAATGCTCAAGATGTGC+AGG | - | chr5.4:6433017-6433036 | MS.gene015443:intron | 40.0% | |
| TTCTCCAAAAAGCTTAGCAC+TGG | + | chr5.4:6433771-6433790 | None:intergenic | 40.0% | |
| ! | ATGTTGGATGGACTTGAAGA+AGG | + | chr5.4:6432491-6432510 | None:intergenic | 40.0% |
| ! | CTTGAGTTGCAGAATCAGTT+GGG | - | chr5.4:6434113-6434132 | MS.gene015443:CDS | 40.0% |
| ! | GACTAGGTCTTGTGTTAAGA+TGG | + | chr5.4:6432596-6432615 | None:intergenic | 40.0% |
| ! | TCTTGAGTTGCAGAATCAGT+TGG | - | chr5.4:6434112-6434131 | MS.gene015443:CDS | 40.0% |
| ! | TGTTCCAGTGCTAAGCTTTT+TGG | - | chr5.4:6433764-6433783 | MS.gene015443:CDS | 40.0% |
| !! | CCTTTGCAAGTACTGAAACA+GGG | + | chr5.4:6433956-6433975 | None:intergenic | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr5.4:6433168-6433187 | MS.gene015443:intron | 40.0% |
| !!! | GGATTTTATGGCATTGATGG+TGG | - | chr5.4:6433975-6433994 | MS.gene015443:CDS | 40.0% |
| AATAAGGAAACGGAAGCGAG+AGG | + | chr5.4:6432983-6433002 | None:intergenic | 45.0% | |
| AGTGAGCACATCAACAGGAT+TGG | + | chr5.4:6432893-6432912 | None:intergenic | 45.0% | |
| ATCATTGGGACCAGATGGTT+TGG | - | chr5.4:6432453-6432472 | MS.gene015443:CDS | 45.0% | |
| ATCTATCCGATGTGGGACTT+GGG | + | chr5.4:6433097-6433116 | None:intergenic | 45.0% | |
| ATCTGGACTCGCCATTAATC+TGG | + | chr5.4:6432780-6432799 | None:intergenic | 45.0% | |
| CCCTGTTTCAGTACTTGCAA+AGG | - | chr5.4:6433953-6433972 | MS.gene015443:CDS | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | - | chr5.4:6433088-6433107 | MS.gene015443:intron | 45.0% | |
| TAGTTCCTGAACCAATGACG+CGG | + | chr5.4:6432951-6432970 | None:intergenic | 45.0% | |
| TATCTATCCGATGTGGGACT+TGG | + | chr5.4:6433098-6433117 | None:intergenic | 45.0% | |
| TGAGGAGAGTAACGAACCAA+AGG | + | chr5.4:6432850-6432869 | None:intergenic | 45.0% | |
| TGTTCGAGCCAAATTTGCGA+CGG | + | chr5.4:6433907-6433926 | None:intergenic | 45.0% | |
| ! | ACGGACTATTCAGTGACGAT+GGG | - | chr5.4:6432721-6432740 | MS.gene015443:CDS | 45.0% |
| ! | ATCTTGTTGTGGCGTTTCGT+TGG | + | chr5.4:6432529-6432548 | None:intergenic | 45.0% |
| ! | CTTGGTAGAGGAGGTGTATT+GGG | - | chr5.4:6434026-6434045 | MS.gene015443:CDS | 45.0% |
| ! | CTTGGTGCGTGAATAGGTTT+AGG | + | chr5.4:6433240-6433259 | None:intergenic | 45.0% |
| ! | GCGCGCATGTTTGGTAATTA+AGG | - | chr5.4:6433436-6433455 | MS.gene015443:intron | 45.0% |
| ! | TGGTCAAGCATTAGTGTTGG+AGG | - | chr5.4:6433741-6433760 | MS.gene015443:CDS | 45.0% |
| ! | TTGCGCGCATGTTTGGTAAT+TGG | - | chr5.4:6433434-6433453 | MS.gene015443:intron | 45.0% |
| !! | ATTAGTTTGCCTGCACAGCT+TGG | - | chr5.4:6434008-6434027 | MS.gene015443:CDS | 45.0% |
| !! | CCCTTTGCAAGTACTGAAAC+AGG | + | chr5.4:6433957-6433976 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr5.4:6433161-6433180 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr5.4:6433158-6433177 | MS.gene015443:intron | 45.0% |
| AAACATGCGCGCAAGTGCAA+TGG | + | chr5.4:6433428-6433447 | None:intergenic | 50.0% | |
| AACATGCGCGCAAGTGCAAT+GGG | + | chr5.4:6433427-6433446 | None:intergenic | 50.0% | |
| AAGATCTCAGTTATCGGCGC+AGG | - | chr5.4:6432544-6432563 | MS.gene015443:CDS | 50.0% | |
| ACCATTCCTGACAAGCTACG+AGG | - | chr5.4:6432637-6432656 | MS.gene015443:CDS | 50.0% | |
| ATTGCACTTGCGCGCATGTT+TGG | - | chr5.4:6433427-6433446 | MS.gene015443:intron | 50.0% | |
| CATCGTCACTGAATAGTCCG+TGG | + | chr5.4:6432722-6432741 | None:intergenic | 50.0% | |
| CGGACTATTCAGTGACGATG+GGG | - | chr5.4:6432722-6432741 | MS.gene015443:CDS | 50.0% | |
| GCAATCCTCACCTTACAAGC+CGG | - | chr5.4:6433148-6433167 | MS.gene015443:intron | 50.0% | |
| GCTACACTTCTTGGGCCATA+GGG | - | chr5.4:6433877-6433896 | MS.gene015443:CDS | 50.0% | |
| GGAACATGGTGACAGTTCAG+TGG | - | chr5.4:6433713-6433732 | MS.gene015443:CDS | 50.0% | |
| GGAGAGTAACGAACCAAAGG+TGG | + | chr5.4:6432847-6432866 | None:intergenic | 50.0% | |
| GGTGCGTGAATAGGTTTAGG+CGG | + | chr5.4:6433237-6433256 | None:intergenic | 50.0% | |
| GGTTCATCATTGGGACCAGA+TGG | - | chr5.4:6432448-6432467 | MS.gene015443:CDS | 50.0% | |
| GTGACAGTTCAGTGGCACTA+TGG | - | chr5.4:6433721-6433740 | MS.gene015443:CDS | 50.0% | |
| TTGTGGCGTTTCGTTGGAGA+AGG | + | chr5.4:6432523-6432542 | None:intergenic | 50.0% | |
| TTTCGTTGGAGAAGGAGGTG+AGG | + | chr5.4:6432515-6432534 | None:intergenic | 50.0% | |
| ! | AGGGTACTCCGTCGCAAATT+TGG | - | chr5.4:6433896-6433915 | MS.gene015443:CDS | 50.0% |
| ! | ATTTGCGACGGAGTACCCTA+TGG | + | chr5.4:6433895-6433914 | None:intergenic | 50.0% |
| ! | CAAGAACAAGCTCGTCGACT+AGG | + | chr5.4:6432612-6432631 | None:intergenic | 50.0% |
| ! | CACGGACTATTCAGTGACGA+TGG | - | chr5.4:6432720-6432739 | MS.gene015443:CDS | 50.0% |
| ! | GCATACATAGTGGGGGAACA+TGG | - | chr5.4:6433699-6433718 | MS.gene015443:CDS | 50.0% |
| ! | GCTTGGTAGAGGAGGTGTAT+TGG | - | chr5.4:6434025-6434044 | MS.gene015443:CDS | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr5.4:6433156-6433175 | None:intergenic | 50.0% |
| !! | TTTGGGCTTGGTGCGTGAAT+AGG | + | chr5.4:6433246-6433265 | None:intergenic | 50.0% |
| AACCAATGACGCGGTTGGAC+GGG | + | chr5.4:6432942-6432961 | None:intergenic | 55.0% | |
| ACATGCGCGCAAGTGCAATG+GGG | + | chr5.4:6433426-6433445 | None:intergenic | 55.0% | |
| ACCTCTGCATCGTCACTGCT+GGG | - | chr5.4:6432749-6432768 | MS.gene015443:CDS | 55.0% | |
| AGGAGGTGAGGCATGTTGGA+TGG | + | chr5.4:6432503-6432522 | None:intergenic | 55.0% | |
| CACTAAGATCCAGGCCTCCA+CGG | - | chr5.4:6432702-6432721 | MS.gene015443:CDS | 55.0% | |
| CGTCACTGAATAGTCCGTGG+AGG | + | chr5.4:6432719-6432738 | None:intergenic | 55.0% | |
| GAACCAATGACGCGGTTGGA+CGG | + | chr5.4:6432943-6432962 | None:intergenic | 55.0% | |
| GAGAAGGAGGTGAGGCATGT+TGG | + | chr5.4:6432507-6432526 | None:intergenic | 55.0% | |
| GATGCTGGATCTACAGCACG+CGG | - | chr5.4:6432663-6432682 | MS.gene015443:CDS | 55.0% | |
| GGCTACACTTCTTGGGCCAT+AGG | - | chr5.4:6433876-6433895 | MS.gene015443:CDS | 55.0% | |
| TCCTGAACCAATGACGCGGT+TGG | + | chr5.4:6432947-6432966 | None:intergenic | 55.0% | |
| TGGAGGCCTGGATCTTAGTG+CGG | + | chr5.4:6432702-6432721 | None:intergenic | 55.0% | |
| TGGCGTTTCGTTGGAGAAGG+AGG | + | chr5.4:6432520-6432539 | None:intergenic | 55.0% | |
| TTGCCTGCACAGCTTGGTAG+AGG | - | chr5.4:6434014-6434033 | MS.gene015443:CDS | 55.0% | |
| ! | ATCTCGCCTCGTAGCTTGTC+AGG | + | chr5.4:6432646-6432665 | None:intergenic | 55.0% |
| ! | GCCTCGTAGCTTGTCAGGAA+TGG | + | chr5.4:6432641-6432660 | None:intergenic | 55.0% |
| !! | CACCAAGCCCAAAGAGTGCT+GGG | - | chr5.4:6433253-6433272 | MS.gene015443:intron | 55.0% |
| !! | TCCAACCGCGTCATTGGTTC+AGG | - | chr5.4:6432943-6432962 | MS.gene015443:intron | 55.0% |
| AGGCCTGGATCTTAGTGCGG+GGG | + | chr5.4:6432699-6432718 | None:intergenic | 60.0% | |
| AGTTATCGGCGCAGGCAACG+TGG | - | chr5.4:6432552-6432571 | MS.gene015443:CDS | 60.0% | |
| CAAGCTACGAGGCGAGATGC+TGG | - | chr5.4:6432648-6432667 | MS.gene015443:CDS | 60.0% | |
| CCTCACGCCCAGCACTCTTT+GGG | + | chr5.4:6433263-6433282 | None:intergenic | 60.0% | |
| CCTCCTCTACCAAGCTGTGC+AGG | + | chr5.4:6434020-6434039 | None:intergenic | 60.0% | |
| CCTCTGCATCGTCACTGCTG+GGG | - | chr5.4:6432750-6432769 | MS.gene015443:CDS | 60.0% | |
| CCTGCACAGCTTGGTAGAGG+AGG | - | chr5.4:6434017-6434036 | MS.gene015443:CDS | 60.0% | |
| CTGAATAGTCCGTGGAGGCC+TGG | + | chr5.4:6432714-6432733 | None:intergenic | 60.0% | |
| GACCTCTGCATCGTCACTGC+TGG | - | chr5.4:6432748-6432767 | MS.gene015443:CDS | 60.0% | |
| GAGGCCTGGATCTTAGTGCG+GGG | + | chr5.4:6432700-6432719 | None:intergenic | 60.0% | |
| GATCTTAGTGCGGGGGAGGA+AGG | + | chr5.4:6432692-6432711 | None:intergenic | 60.0% | |
| GCTGGGGCTCGCCAGATTAA+TGG | - | chr5.4:6432766-6432785 | MS.gene015443:CDS | 60.0% | |
| GGAGGCCTGGATCTTAGTGC+GGG | + | chr5.4:6432701-6432720 | None:intergenic | 60.0% | |
| GTTATCGGCGCAGGCAACGT+GGG | - | chr5.4:6432553-6432572 | MS.gene015443:CDS | 60.0% | |
| TTCCCGTCCAACCGCGTCAT+TGG | - | chr5.4:6432937-6432956 | MS.gene015443:intron | 60.0% | |
| ! | GCACCAAGCCCAAAGAGTGC+TGG | - | chr5.4:6433252-6433271 | MS.gene015443:intron | 60.0% |
| !! | AAAGAGTGCTGGGCGTGAGG+GGG | - | chr5.4:6433263-6433282 | MS.gene015443:intron | 60.0% |
| !! | CAAAGAGTGCTGGGCGTGAG+GGG | - | chr5.4:6433262-6433281 | MS.gene015443:intron | 60.0% |
| !! | CCAAAGAGTGCTGGGCGTGA+GGG | - | chr5.4:6433261-6433280 | MS.gene015443:intron | 60.0% |
| CCCCAGCAGTGACGATGCAG+AGG | + | chr5.4:6432753-6432772 | None:intergenic | 65.0% | |
| CCCTCACGCCCAGCACTCTT+TGG | + | chr5.4:6433264-6433283 | None:intergenic | 65.0% | |
| CCTCCCCCGCACTAAGATCC+AGG | - | chr5.4:6432693-6432712 | MS.gene015443:CDS | 65.0% | |
| CCTGGATCTTAGTGCGGGGG+AGG | + | chr5.4:6432696-6432715 | None:intergenic | 65.0% | |
| CGCCCAGCACTCTTTGGGCT+TGG | + | chr5.4:6433258-6433277 | None:intergenic | 65.0% | |
| ! | GGGCGTGAGGGGGGTGTATT+GGG | - | chr5.4:6433273-6433292 | MS.gene015443:intron | 65.0% |
| ! | TGGGCGTGAGGGGGGTGTAT+TGG | - | chr5.4:6433272-6433291 | MS.gene015443:intron | 65.0% |
| !! | AAGAGTGCTGGGCGTGAGGG+GGG | - | chr5.4:6433264-6433283 | MS.gene015443:intron | 65.0% |
| !! | CCCAAAGAGTGCTGGGCGTG+AGG | - | chr5.4:6433260-6433279 | MS.gene015443:intron | 65.0% |
| CGGCGCAGGCAACGTGGGAA+TGG | - | chr5.4:6432558-6432577 | MS.gene015443:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 6432430 | 6434142 | 6432430 | ID=MS.gene015443 |
| chr5.4 | mRNA | 6432430 | 6434142 | 6432430 | ID=MS.gene015443.t1;Parent=MS.gene015443 |
| chr5.4 | exon | 6433534 | 6434142 | 6433534 | ID=MS.gene015443.t1.exon1;Parent=MS.gene015443.t1 |
| chr5.4 | CDS | 6433534 | 6434142 | 6433534 | ID=cds.MS.gene015443.t1;Parent=MS.gene015443.t1 |
| chr5.4 | exon | 6432430 | 6432873 | 6432430 | ID=MS.gene015443.t1.exon2;Parent=MS.gene015443.t1 |
| chr5.4 | CDS | 6432430 | 6432873 | 6432430 | ID=cds.MS.gene015443.t1;Parent=MS.gene015443.t1 |
| Gene Sequence |
| Protein sequence |
