Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21451.t1 | XP_003611508.1 | 99 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 4.60E-166 | 594 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21451.t1 | P19446 | 83.8 | 303 | 47 | 1 | 1 | 303 | 1 | 301 | 8.9e-142 | 504.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21451.t1 | G7K140 | 99.0 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 3.3e-166 | 594.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059657 | MS.gene21451 | 0.830541 | 2.77E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025803 | MS.gene21451 | PPI |
| MS.gene015443 | MS.gene21451 | PPI |
| MS.gene025802 | MS.gene21451 | PPI |
| MS.gene028531 | MS.gene21451 | PPI |
| MS.gene21451 | MS.gene21162 | PPI |
| MS.gene40108 | MS.gene21451 | PPI |
| MS.gene09966 | MS.gene21451 | PPI |
| MS.gene053632 | MS.gene21451 | PPI |
| MS.gene40601 | MS.gene21451 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21451.t1 | MTR_5g014710 | 89.535 | 344 | 23 | 1 | 1 | 344 | 1 | 331 | 0.0 | 617 |
| MS.gene21451.t1 | MTR_4g092690 | 81.518 | 303 | 54 | 1 | 1 | 303 | 1 | 301 | 0.0 | 507 |
| MS.gene21451.t1 | MTR_8g463760 | 66.667 | 258 | 86 | 0 | 45 | 302 | 29 | 286 | 1.62e-120 | 351 |
| MS.gene21451.t1 | MTR_8g463760 | 70.526 | 190 | 56 | 0 | 45 | 234 | 29 | 218 | 4.79e-91 | 273 |
| MS.gene21451.t1 | MTR_2g021700 | 80.000 | 60 | 12 | 0 | 204 | 263 | 43 | 102 | 6.05e-27 | 104 |
| MS.gene21451.t1 | MTR_2g045010 | 80.000 | 60 | 12 | 0 | 204 | 263 | 43 | 102 | 6.05e-27 | 104 |
| MS.gene21451.t1 | MTR_4g033285 | 81.481 | 54 | 10 | 0 | 204 | 257 | 43 | 96 | 3.66e-24 | 95.1 |
| MS.gene21451.t1 | MTR_5g012390 | 23.643 | 258 | 164 | 10 | 48 | 286 | 39 | 282 | 8.31e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21451.t1 | AT2G22780 | 85.473 | 296 | 43 | 0 | 8 | 303 | 4 | 299 | 0.0 | 518 |
| MS.gene21451.t1 | AT5G09660 | 72.674 | 344 | 77 | 2 | 1 | 344 | 1 | 327 | 3.85e-171 | 480 |
| MS.gene21451.t1 | AT5G09660 | 80.198 | 303 | 56 | 1 | 1 | 303 | 1 | 299 | 3.32e-169 | 476 |
| MS.gene21451.t1 | AT5G09660 | 72.384 | 344 | 77 | 3 | 1 | 344 | 1 | 326 | 9.13e-169 | 474 |
| MS.gene21451.t1 | AT5G09660 | 75.157 | 318 | 66 | 1 | 27 | 344 | 2 | 306 | 2.38e-165 | 465 |
| MS.gene21451.t1 | AT5G09660 | 83.755 | 277 | 45 | 0 | 27 | 303 | 2 | 278 | 1.09e-163 | 461 |
| MS.gene21451.t1 | AT3G47520 | 67.188 | 256 | 84 | 0 | 47 | 302 | 83 | 338 | 4.03e-124 | 363 |
| MS.gene21451.t1 | AT1G53240 | 59.672 | 305 | 110 | 1 | 40 | 344 | 23 | 314 | 3.11e-123 | 358 |
| MS.gene21451.t1 | AT3G15020 | 60.667 | 300 | 105 | 1 | 45 | 344 | 28 | 314 | 6.96e-122 | 355 |
| MS.gene21451.t1 | AT3G15020 | 63.571 | 280 | 99 | 1 | 45 | 321 | 28 | 307 | 1.26e-121 | 353 |
Find 95 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGAATTTGCATATGAATT+TGG | 0.129618 | 5.1:-7540257 | None:intergenic |
| AGGATTCAAAGTTGCGATTT+TGG | 0.162640 | 5.1:+7540486 | MS.gene21451:CDS |
| GCTTGTTGCTAACTCTTTCT+TGG | 0.221091 | 5.1:-7544656 | None:intergenic |
| CTCTTGTCATTCCAGGTTTA+CGG | 0.229245 | 5.1:-7541690 | None:intergenic |
| TCAAGTACTCAATTTCCTTT+GGG | 0.248840 | 5.1:-7543290 | None:intergenic |
| CAGCTTGAGGATGCACTTAC+AGG | 0.286947 | 5.1:+7541634 | MS.gene21451:CDS |
| TTGACAGATCGCATACAAAA+TGG | 0.300388 | 5.1:+7543309 | MS.gene21451:CDS |
| GTCAAGTACTCAATTTCCTT+TGG | 0.312990 | 5.1:-7543291 | None:intergenic |
| ATATTTCAACAGGGCAAGTT+TGG | 0.323504 | 5.1:+7544627 | MS.gene21451:intron |
| TGTTTAGGTTCGAGGATTCT+TGG | 0.325611 | 5.1:+7541603 | MS.gene21451:intron |
| GTTTAGGTTCGAGGATTCTT+GGG | 0.338537 | 5.1:+7541604 | MS.gene21451:intron |
| ATGTGGATGTTCCTGTTGTC+GGG | 0.339112 | 5.1:+7543103 | MS.gene21451:CDS |
| AGATCATCTCTTGTCATTCC+AGG | 0.341489 | 5.1:-7541697 | None:intergenic |
| TAAAATTCAGGCTGAAGTTA+TGG | 0.356116 | 5.1:+7543065 | MS.gene21451:intron |
| TCTTGTCATTCCAGGTTTAC+GGG | 0.357597 | 5.1:-7541689 | None:intergenic |
| TGCAGATCCAGCTCCAGCTT+TGG | 0.369553 | 5.1:-7543883 | None:intergenic |
| TGCACTTACAGGTATGGATT+TGG | 0.375153 | 5.1:+7541645 | MS.gene21451:CDS |
| TGACAATGCTTGACGTGGTT+AGG | 0.381452 | 5.1:+7541887 | MS.gene21451:CDS |
| TTGAAAACCTCAGCCGCAAT+AGG | 0.389125 | 5.1:-7541826 | None:intergenic |
| CACTGTTCCTATTGCGGCTG+AGG | 0.396544 | 5.1:+7541819 | MS.gene21451:CDS |
| AAGAGGTAAAATCGTGATTC+CGG | 0.396845 | 5.1:-7543133 | None:intergenic |
| CTCTAGGCCAAAGCTGGAGC+TGG | 0.397270 | 5.1:+7543876 | MS.gene21451:intron |
| AAAATTCAGGCTGAAGTTAT+GGG | 0.399622 | 5.1:+7543066 | MS.gene21451:intron |
| ATAGGAACAGTGGAGTTAAC+TGG | 0.409234 | 5.1:-7541808 | None:intergenic |
| GTCACTCCCAACAGTCTCTT+GGG | 0.415028 | 5.1:-7541868 | None:intergenic |
| CAACAGGGCAAGTTTGGAAA+AGG | 0.416141 | 5.1:+7544633 | MS.gene21451:intron |
| TGTCACTCCCAACAGTCTCT+TGG | 0.418692 | 5.1:-7541869 | None:intergenic |
| GATGTGGATGTTCCTGTTGT+CGG | 0.424834 | 5.1:+7543102 | MS.gene21451:CDS |
| ATGTTCATTGCCGTGCCAAA+GGG | 0.429704 | 5.1:+7540455 | MS.gene21451:CDS |
| GATCTCTTCAATATTAATGC+TGG | 0.432800 | 5.1:+7541715 | MS.gene21451:CDS |
| GATTTGGTAATCATTCCTGC+TGG | 0.434549 | 5.1:+7541661 | MS.gene21451:CDS |
| TGACAGATCGCATACAAAAT+GGG | 0.435560 | 5.1:+7543310 | MS.gene21451:CDS |
| GTTAGCAACAAGCGTGGAGA+AGG | 0.441857 | 5.1:+7544666 | MS.gene21451:CDS |
| GACAATGCTTGACGTGGTTA+GGG | 0.451116 | 5.1:+7541888 | MS.gene21451:CDS |
| TTGGGTGCTGCTGGTGGCAT+AGG | 0.470171 | 5.1:+7540505 | MS.gene21451:CDS |
| ATCTTCATCAACATAGAAAG+AGG | 0.476416 | 5.1:-7540532 | None:intergenic |
| ATCTCTTCAATATTAATGCT+GGG | 0.478335 | 5.1:+7541716 | MS.gene21451:CDS |
| ATTTGGTAATCATTCCTGCT+GGG | 0.479832 | 5.1:+7541662 | MS.gene21451:CDS |
| CATACATACCACAAACGTAT+TGG | 0.480102 | 5.1:-7541911 | None:intergenic |
| TATGATCCCAAGAGACTGTT+GGG | 0.480871 | 5.1:+7541862 | MS.gene21451:CDS |
| TATGATGTCGTTAATACTCC+TGG | 0.481340 | 5.1:+7540583 | MS.gene21451:CDS |
| ATCAAGTTTACAATCGCCTT+AGG | 0.482390 | 5.1:-7541778 | None:intergenic |
| GCTGGGGTTCCCCGTAAACC+TGG | 0.485146 | 5.1:+7541679 | MS.gene21451:CDS |
| ATTTCGATCTCACAGCTGAC+AGG | 0.485786 | 5.1:-7544753 | None:intergenic |
| ATGTGCATATGTTGATTCAC+AGG | 0.490249 | 5.1:+7544263 | MS.gene21451:CDS |
| TGAGGATGCACTTACAGGTA+TGG | 0.495906 | 5.1:+7541639 | MS.gene21451:CDS |
| GGTTAGGGCCAATACGTTTG+TGG | 0.497203 | 5.1:+7541903 | MS.gene21451:CDS |
| CCTTGAGATTGGGAGGATTG+AGG | 0.501008 | 5.1:-7540301 | None:intergenic |
| GGTTTACGGGGAACCCCAGC+AGG | 0.501240 | 5.1:-7541676 | None:intergenic |
| AATTTCCTTTGGGGTGAAAG+AGG | 0.509427 | 5.1:-7543280 | None:intergenic |
| TGGATCTGCAACACTATCAA+TGG | 0.512103 | 5.1:+7543896 | MS.gene21451:CDS |
| AATGTTCATTGCCGTGCCAA+AGG | 0.520173 | 5.1:+7540454 | MS.gene21451:CDS |
| TCCTTTGGGGTGAAAGAGGA+AGG | 0.520708 | 5.1:-7543276 | None:intergenic |
| ACAGGAACATCCACATCCCT+TGG | 0.523779 | 5.1:-7543096 | None:intergenic |
| GTTGATGAAGATGAATCCAT+TGG | 0.529675 | 5.1:+7540543 | MS.gene21451:CDS |
| AAAATCGCAACTTTGAATCC+TGG | 0.532660 | 5.1:-7540484 | None:intergenic |
| ACCTTCCTCTTTCACCCCAA+AGG | 0.539622 | 5.1:+7543275 | MS.gene21451:CDS |
| GCATGTCTTCGTGCGTTGAA+AGG | 0.542596 | 5.1:+7544222 | MS.gene21451:CDS |
| TAACTCCACTGTTCCTATTG+CGG | 0.545645 | 5.1:+7541813 | MS.gene21451:CDS |
| AAGTTATGGGTCTTGATCCA+AGG | 0.546437 | 5.1:+7543079 | MS.gene21451:CDS |
| ATTGGGAGGATTGAGGTGGC+TGG | 0.548918 | 5.1:-7540294 | None:intergenic |
| TATCACATCCTGAAAATAAG+TGG | 0.549427 | 5.1:+7544718 | MS.gene21451:CDS |
| GATTGCAAAGCGATGTCCTA+AGG | 0.560507 | 5.1:+7541762 | MS.gene21451:CDS |
| TTTGGTAATCATTCCTGCTG+GGG | 0.563841 | 5.1:+7541663 | MS.gene21451:CDS |
| CACATCCTGAAAATAAGTGG+TGG | 0.574757 | 5.1:+7544721 | MS.gene21451:CDS |
| TTATGATCCCAAGAGACTGT+TGG | 0.575018 | 5.1:+7541861 | MS.gene21451:CDS |
| GGGTCTTGATCCAAGGGATG+TGG | 0.578747 | 5.1:+7543086 | MS.gene21451:CDS |
| TGTGGATGTTCCTGTTGTCG+GGG | 0.585204 | 5.1:+7543104 | MS.gene21451:CDS |
| CAAGTACTCAATTTCCTTTG+GGG | 0.586894 | 5.1:-7543289 | None:intergenic |
| CTGATATCAGAAGTAACACC+AGG | 0.589402 | 5.1:-7540601 | None:intergenic |
| GACAGATCGCATACAAAATG+GGG | 0.591432 | 5.1:+7543311 | MS.gene21451:CDS |
| TTAGCAACAAGCGTGGAGAA+GGG | 0.591626 | 5.1:+7544667 | MS.gene21451:CDS |
| TTTAGGTTCGAGGATTCTTG+GGG | 0.597375 | 5.1:+7541605 | MS.gene21451:intron |
| CTTGTCATTCCAGGTTTACG+GGG | 0.597794 | 5.1:-7541688 | None:intergenic |
| AGATGAAGAACAGAAACCAA+TGG | 0.604683 | 5.1:-7540559 | None:intergenic |
| AGTTATGGGTCTTGATCCAA+GGG | 0.605244 | 5.1:+7543080 | MS.gene21451:CDS |
| GTGCAGACCTGAGAAAGAAG+AGG | 0.606511 | 5.1:-7543150 | None:intergenic |
| CTTGGGGCAAAATCAGCTTG+AGG | 0.607236 | 5.1:+7541621 | MS.gene21451:CDS |
| ACATCCTGAAAATAAGTGGT+GGG | 0.611234 | 5.1:+7544722 | MS.gene21451:CDS |
| AAACGTACCTTGAGATTGGG+AGG | 0.611382 | 5.1:-7540308 | None:intergenic |
| TACTTCTGATATCAGTCACA+TGG | 0.612010 | 5.1:+7540609 | MS.gene21451:CDS |
| TTTCGATCTCACAGCTGACA+GGG | 0.612593 | 5.1:-7544752 | None:intergenic |
| CCTCAATCCTCCCAATCTCA+AGG | 0.621292 | 5.1:+7540301 | MS.gene21451:CDS |
| GTGGATGTTCCTGTTGTCGG+GGG | 0.624820 | 5.1:+7543105 | MS.gene21451:CDS |
| GAAAGAGTTAGCAACAAGCG+TGG | 0.628742 | 5.1:+7544660 | MS.gene21451:CDS |
| GTTCATTGCCGTGCCAAAGG+GGG | 0.629166 | 5.1:+7540457 | MS.gene21451:CDS |
| TGTTCATTGCCGTGCCAAAG+GGG | 0.630055 | 5.1:+7540456 | MS.gene21451:CDS |
| CTCAGCCGCAATAGGAACAG+TGG | 0.637103 | 5.1:-7541818 | None:intergenic |
| TTTGGGGTGAAAGAGGAAGG+TGG | 0.646297 | 5.1:-7543273 | None:intergenic |
| TCTTCGTGCGTTGAAAGGAG+AGG | 0.666069 | 5.1:+7544227 | MS.gene21451:CDS |
| TGAGATTGGGAGGATTGAGG+TGG | 0.679990 | 5.1:-7540298 | None:intergenic |
| GGGAGTGACAATGCTTGACG+TGG | 0.697199 | 5.1:+7541882 | MS.gene21451:CDS |
| ACAGATCGCATACAAAATGG+GGG | 0.720421 | 5.1:+7543312 | MS.gene21451:CDS |
| GTTATGTAGATGAATGAACA+TGG | 0.725435 | 5.1:+7540415 | MS.gene21451:intron |
| ATGTAGATGAATGAACATGG+TGG | 0.812154 | 5.1:+7540418 | MS.gene21451:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAATATAAATAGAT+GGG | + | chr5.1:7543927-7543946 | MS.gene21451:intron | 10.0% |
| !!! | TTATTTTGAATATAAATAGA+TGG | + | chr5.1:7543926-7543945 | MS.gene21451:intron | 10.0% |
| !! | AAGTAAGAAATTAAATCTTT+GGG | + | chr5.1:7542099-7542118 | MS.gene21451:intron | 15.0% |
| !! | TAAGTAAGAAATTAAATCTT+TGG | + | chr5.1:7542098-7542117 | MS.gene21451:intron | 15.0% |
| !! | TTAATTCCATTAATAAGTAT+AGG | - | chr5.1:7543963-7543982 | None:intergenic | 15.0% |
| !! | TTATTTCGTGATTTATAATT+TGG | + | chr5.1:7540665-7540684 | MS.gene21451:intron | 15.0% |
| !!! | ATATGTTGACTTAAATTATA+TGG | + | chr5.1:7543483-7543502 | MS.gene21451:intron | 15.0% |
| !!! | ATTAGAATCTTTTAAAACTA+TGG | - | chr5.1:7544342-7544361 | None:intergenic | 15.0% |
| !! | AACATTGGAATATTAGATAT+CGG | - | chr5.1:7543401-7543420 | None:intergenic | 20.0% |
| !! | AATCTTAAAAATACTTTAGC+TGG | + | chr5.1:7542471-7542490 | MS.gene21451:intron | 20.0% |
| !! | ACATATAAGAAAAACAATTG+TGG | + | chr5.1:7544020-7544039 | MS.gene21451:intron | 20.0% |
| !! | ACTCAAGTAATTAATATTGT+TGG | + | chr5.1:7542431-7542450 | MS.gene21451:intron | 20.0% |
| !! | ATATCTACTTATATTTCAAC+AGG | + | chr5.1:7544617-7544636 | MS.gene21451:intron | 20.0% |
| !! | ATTCAAAGATCATCATAAAT+TGG | - | chr5.1:7542139-7542158 | None:intergenic | 20.0% |
| !! | ATTTGTGCAAATTTGATTAT+CGG | + | chr5.1:7540799-7540818 | MS.gene21451:intron | 20.0% |
| !! | CCAAAAAAGTAATAAATGAA+TGG | + | chr5.1:7543989-7544008 | MS.gene21451:intron | 20.0% |
| !! | TATCTACTTATATTTCAACA+GGG | + | chr5.1:7544618-7544637 | MS.gene21451:intron | 20.0% |
| !! | TTTATGATGATCTTTGAATA+TGG | + | chr5.1:7542140-7542159 | MS.gene21451:intron | 20.0% |
| !!! | ATTTCTTACTTAAAGTATCA+TGG | - | chr5.1:7542090-7542109 | None:intergenic | 20.0% |
| !!! | CCATTCATTTATTACTTTTT+TGG | - | chr5.1:7543992-7544011 | None:intergenic | 20.0% |
| !!! | CTTATTTTTATAAGAGTGTT+AGG | - | chr5.1:7541398-7541417 | None:intergenic | 20.0% |
| !!! | CTTTAATTTTTCTATATGCA+GGG | + | chr5.1:7543665-7543684 | MS.gene21451:intron | 20.0% |
| !!! | TATTTTATTAGGTGAAATCA+AGG | - | chr5.1:7541352-7541371 | None:intergenic | 20.0% |
| !!! | TCATTTTTACATGTATCAAT+AGG | - | chr5.1:7544583-7544602 | None:intergenic | 20.0% |
| !!! | TGAATAAGTACTTTTTCTTA+AGG | + | chr5.1:7544402-7544421 | MS.gene21451:intron | 20.0% |
| !!! | TTGTTACCATATTTGATTTT+AGG | + | chr5.1:7543195-7543214 | MS.gene21451:intron | 20.0% |
| !!! | TTTCTTACTTAAAGTATCAT+GGG | - | chr5.1:7542089-7542108 | None:intergenic | 20.0% |
| ! | ACAAAAACTAGATGATTAGA+TGG | - | chr5.1:7542891-7542910 | None:intergenic | 25.0% |
| ! | ATCTCTTCAATATTAATGCT+GGG | + | chr5.1:7541716-7541735 | MS.gene21451:CDS | 25.0% |
| ! | CATATATACTTGTATAGCAT+AGG | - | chr5.1:7543773-7543792 | None:intergenic | 25.0% |
| ! | CTAAATAATCAAATCCAAAC+AGG | + | chr5.1:7541476-7541495 | MS.gene21451:intron | 25.0% |
| ! | TGGATACACAACTTAATTAA+GGG | + | chr5.1:7540964-7540983 | MS.gene21451:intron | 25.0% |
| ! | TTGAAAATACTAATCTGTCT+TGG | + | chr5.1:7543713-7543732 | MS.gene21451:intron | 25.0% |
| ! | TTGGATACACAACTTAATTA+AGG | + | chr5.1:7540963-7540982 | MS.gene21451:intron | 25.0% |
| !! | AAAACTTTTCCTACAAACAA+AGG | - | chr5.1:7543558-7543577 | None:intergenic | 25.0% |
| !! | ACAATGTTGTAATTTTCTCT+AGG | + | chr5.1:7543860-7543879 | MS.gene21451:intron | 25.0% |
| !! | ATTTGATTATTTAGCTTCGA+GGG | - | chr5.1:7541470-7541489 | None:intergenic | 25.0% |
| !! | CTAACACTCACTATTTTATT+AGG | - | chr5.1:7541363-7541382 | None:intergenic | 25.0% |
| !! | CTATGGATTATCTATACATT+TGG | + | chr5.1:7543825-7543844 | MS.gene21451:intron | 25.0% |
| !! | GCTTGATAGTTTATAAAAAG+AGG | + | chr5.1:7541226-7541245 | MS.gene21451:intron | 25.0% |
| !!! | AAAATACTGCAGTTTTTTCA+AGG | - | chr5.1:7542749-7542768 | None:intergenic | 25.0% |
| !!! | AAATACTGCAGTTTTTTCAA+GGG | - | chr5.1:7542748-7542767 | None:intergenic | 25.0% |
| !!! | AAATGCTTTGAATTTTGTAG+AGG | + | chr5.1:7543620-7543639 | MS.gene21451:intron | 25.0% |
| !!! | AATCTTTTAAAACTATGGCA+GGG | - | chr5.1:7544337-7544356 | None:intergenic | 25.0% |
| !!! | CAACATGCATTTTTGTTTTA+GGG | - | chr5.1:7541502-7541521 | None:intergenic | 25.0% |
| !!! | CTTTTTTGAAATTTCGTTCT+TGG | + | chr5.1:7544089-7544108 | MS.gene21451:intron | 25.0% |
| !!! | GCTTTAATTTTTCTATATGC+AGG | + | chr5.1:7543664-7543683 | MS.gene21451:intron | 25.0% |
| !!! | TCAACATGCATTTTTGTTTT+AGG | - | chr5.1:7541503-7541522 | None:intergenic | 25.0% |
| !!! | TGTTGACTTAAATTATATGG+TGG | + | chr5.1:7543486-7543505 | MS.gene21451:intron | 25.0% |
| AAAATACTAATCTGTCTTGG+TGG | + | chr5.1:7543716-7543735 | MS.gene21451:intron | 30.0% | |
| AAAATTCAGGCTGAAGTTAT+GGG | + | chr5.1:7543066-7543085 | MS.gene21451:intron | 30.0% | |
| AATAGAGGATCAATAGACAT+GGG | + | chr5.1:7542545-7542564 | MS.gene21451:intron | 30.0% | |
| AATTCACCCCAATAAAAAAG+TGG | - | chr5.1:7541276-7541295 | None:intergenic | 30.0% | |
| ACTTCATTTATTCTCCTTGT+TGG | + | chr5.1:7543039-7543058 | MS.gene21451:intron | 30.0% | |
| ACTTTGTCATTGAATCTTTC+TGG | + | chr5.1:7540763-7540782 | MS.gene21451:intron | 30.0% | |
| ATACCTCTCATAATCACTTA+GGG | - | chr5.1:7544524-7544543 | None:intergenic | 30.0% | |
| ATATGATTCCTTCATTGCTA+TGG | + | chr5.1:7543808-7543827 | MS.gene21451:intron | 30.0% | |
| ATCTTCATCAACATAGAAAG+AGG | - | chr5.1:7540535-7540554 | None:intergenic | 30.0% | |
| ATTCACCCCAATAAAAAAGT+GGG | - | chr5.1:7541275-7541294 | None:intergenic | 30.0% | |
| CGTGAATTTGCATATGAATT+TGG | - | chr5.1:7540260-7540279 | None:intergenic | 30.0% | |
| CTTTGTCATTGAATCTTTCT+GGG | + | chr5.1:7540764-7540783 | MS.gene21451:intron | 30.0% | |
| GATACTATTAACGTAATGAC+AGG | + | chr5.1:7542670-7542689 | MS.gene21451:intron | 30.0% | |
| GATCTCTTCAATATTAATGC+TGG | + | chr5.1:7541715-7541734 | MS.gene21451:CDS | 30.0% | |
| GATGAGTAATGATTGAACAT+TGG | - | chr5.1:7543416-7543435 | None:intergenic | 30.0% | |
| GTTATGTAGATGAATGAACA+TGG | + | chr5.1:7540415-7540434 | MS.gene21451:intron | 30.0% | |
| TAAAATTCAGGCTGAAGTTA+TGG | + | chr5.1:7543065-7543084 | MS.gene21451:intron | 30.0% | |
| TAAGTGTAGCATAAAAAGCT+GGG | - | chr5.1:7541952-7541971 | None:intergenic | 30.0% | |
| TACAATATCAGTTCAGAAGT+TGG | + | chr5.1:7542796-7542815 | MS.gene21451:intron | 30.0% | |
| TAGATAATCCATAGCAATGA+AGG | - | chr5.1:7543819-7543838 | None:intergenic | 30.0% | |
| TATCACATCCTGAAAATAAG+TGG | + | chr5.1:7544718-7544737 | MS.gene21451:CDS | 30.0% | |
| TATTAACGTAATGACAGGAA+GGG | + | chr5.1:7542675-7542694 | MS.gene21451:intron | 30.0% | |
| TCAAGTACTCAATTTCCTTT+GGG | - | chr5.1:7543293-7543312 | None:intergenic | 30.0% | |
| TCATGACTTCTTAACAATGT+TGG | + | chr5.1:7544133-7544152 | MS.gene21451:intron | 30.0% | |
| TGAGAGCCTATACTTATTAA+TGG | + | chr5.1:7543954-7543973 | MS.gene21451:intron | 30.0% | |
| TGCAGACCTAAAATCAAATA+TGG | - | chr5.1:7543204-7543223 | None:intergenic | 30.0% | |
| TGCTATAAGTTCTGTAATTC+TGG | - | chr5.1:7541125-7541144 | None:intergenic | 30.0% | |
| TGTTCTTTACCTATCAACTA+TGG | + | chr5.1:7543436-7543455 | MS.gene21451:intron | 30.0% | |
| TTACATTGTAAGGTTCTGTT+TGG | + | chr5.1:7540944-7540963 | MS.gene21451:intron | 30.0% | |
| TTTATAGACCCCTAATACTA+AGG | + | chr5.1:7542511-7542530 | MS.gene21451:intron | 30.0% | |
| ! | ATAACTTCAGCCTGAATTTT+AGG | - | chr5.1:7543066-7543085 | None:intergenic | 30.0% |
| ! | GATTTGATTATTTAGCTTCG+AGG | - | chr5.1:7541471-7541490 | None:intergenic | 30.0% |
| ! | TGAAGAGCAATAGTTTCTTT+TGG | + | chr5.1:7542408-7542427 | MS.gene21451:intron | 30.0% |
| ! | TTAAATCTTTGGGCAAGTTT+TGG | + | chr5.1:7542109-7542128 | MS.gene21451:intron | 30.0% |
| !! | AGTGTCATTGTTGATTCAAT+TGG | - | chr5.1:7540364-7540383 | None:intergenic | 30.0% |
| !!! | CTAACACCCACTTTTTTATT+GGG | + | chr5.1:7541266-7541285 | MS.gene21451:intron | 30.0% |
| !!! | GAATCTTTTAAAACTATGGC+AGG | - | chr5.1:7544338-7544357 | None:intergenic | 30.0% |
| !!! | TAACACCCACTTTTTTATTG+GGG | + | chr5.1:7541267-7541286 | MS.gene21451:intron | 30.0% |
| !!! | TCTAACACCCACTTTTTTAT+TGG | + | chr5.1:7541265-7541284 | MS.gene21451:intron | 30.0% |
| AAAATCGCAACTTTGAATCC+TGG | - | chr5.1:7540487-7540506 | None:intergenic | 35.0% | |
| AACCATGTCCTTAGTATTAG+GGG | - | chr5.1:7542522-7542541 | None:intergenic | 35.0% | |
| AACGAATCACTACACGTATA+TGG | - | chr5.1:7540717-7540736 | None:intergenic | 35.0% | |
| AAGAGGTAAAATCGTGATTC+CGG | - | chr5.1:7543136-7543155 | None:intergenic | 35.0% | |
| AAGGAGGGAATAATGGTAAA+AGG | + | chr5.1:7542569-7542588 | MS.gene21451:intron | 35.0% | |
| AAGTGAGCATATTTGTGAGA+AGG | + | chr5.1:7542198-7542217 | MS.gene21451:intron | 35.0% | |
| ACATCCTGAAAATAAGTGGT+GGG | + | chr5.1:7544722-7544741 | MS.gene21451:CDS | 35.0% | |
| ACGAATCACTACACGTATAT+GGG | - | chr5.1:7540716-7540735 | None:intergenic | 35.0% | |
| ACTAAATTGCTTACGTGCTT+AGG | + | chr5.1:7542279-7542298 | MS.gene21451:intron | 35.0% | |
| AGATGAAGAACAGAAACCAA+TGG | - | chr5.1:7540562-7540581 | None:intergenic | 35.0% | |
| AGATGATTAGATGGACGTAA+CGG | - | chr5.1:7542882-7542901 | None:intergenic | 35.0% | |
| AGGAGGGAATAATGGTAAAA+GGG | + | chr5.1:7542570-7542589 | MS.gene21451:intron | 35.0% | |
| ATAAAATGGTGAAACCCACA+TGG | - | chr5.1:7541299-7541318 | None:intergenic | 35.0% | |
| ATATTTCAACAGGGCAAGTT+TGG | + | chr5.1:7544627-7544646 | MS.gene21451:intron | 35.0% | |
| ATCAAGTTTACAATCGCCTT+AGG | - | chr5.1:7541781-7541800 | None:intergenic | 35.0% | |
| ATGTAGATGAATGAACATGG+TGG | + | chr5.1:7540418-7540437 | MS.gene21451:intron | 35.0% | |
| CAACCATGTCCTTAGTATTA+GGG | - | chr5.1:7542523-7542542 | None:intergenic | 35.0% | |
| CAAGTACTCAATTTCCTTTG+GGG | - | chr5.1:7543292-7543311 | None:intergenic | 35.0% | |
| CATACATACCACAAACGTAT+TGG | - | chr5.1:7541914-7541933 | None:intergenic | 35.0% | |
| CATACCTCTCATAATCACTT+AGG | - | chr5.1:7544525-7544544 | None:intergenic | 35.0% | |
| CGAAGATTAAATCATCCCAT+TGG | + | chr5.1:7542315-7542334 | MS.gene21451:intron | 35.0% | |
| CTAATACTAAGGACATGGTT+GGG | + | chr5.1:7542522-7542541 | MS.gene21451:intron | 35.0% | |
| CTATTAACGTAATGACAGGA+AGG | + | chr5.1:7542674-7542693 | MS.gene21451:intron | 35.0% | |
| GAAAAACGTACCTTGAGATT+GGG | - | chr5.1:7540314-7540333 | None:intergenic | 35.0% | |
| GAATAGAGGATCAATAGACA+TGG | + | chr5.1:7542544-7542563 | MS.gene21451:intron | 35.0% | |
| GCTACACTTACATCATAACT+AGG | + | chr5.1:7541962-7541981 | MS.gene21451:intron | 35.0% | |
| GCTTGCATGGGAAAAAATTT+AGG | + | chr5.1:7543642-7543661 | MS.gene21451:intron | 35.0% | |
| GGTTTAACCTGAAATTTGAG+TGG | - | chr5.1:7543255-7543274 | None:intergenic | 35.0% | |
| GTAAGTGTAGCATAAAAAGC+TGG | - | chr5.1:7541953-7541972 | None:intergenic | 35.0% | |
| GTATCTGTGCTTACATTGTA+AGG | + | chr5.1:7540934-7540953 | MS.gene21451:intron | 35.0% | |
| GTCAAGTACTCAATTTCCTT+TGG | - | chr5.1:7543294-7543313 | None:intergenic | 35.0% | |
| GTGATTCGTTGTCATGAATT+TGG | + | chr5.1:7540727-7540746 | MS.gene21451:intron | 35.0% | |
| TACCTCTCATAATCACTTAG+GGG | - | chr5.1:7544523-7544542 | None:intergenic | 35.0% | |
| TACTTCTGATATCAGTCACA+TGG | + | chr5.1:7540609-7540628 | MS.gene21451:CDS | 35.0% | |
| TATGATGTCGTTAATACTCC+TGG | + | chr5.1:7540583-7540602 | MS.gene21451:CDS | 35.0% | |
| TCAACTGTTTCATAAAGTGC+AGG | + | chr5.1:7544173-7544192 | MS.gene21451:intron | 35.0% | |
| TCACATATTGTATCGTAGTG+TGG | + | chr5.1:7542985-7543004 | MS.gene21451:intron | 35.0% | |
| TCACTTTATACGTGTAACTG+CGG | - | chr5.1:7542184-7542203 | None:intergenic | 35.0% | |
| TCTTTACCTATCAACTATGG+CGG | + | chr5.1:7543439-7543458 | MS.gene21451:intron | 35.0% | |
| TGAAAAACGTACCTTGAGAT+TGG | - | chr5.1:7540315-7540334 | None:intergenic | 35.0% | |
| TGACAGATCGCATACAAAAT+GGG | + | chr5.1:7543310-7543329 | MS.gene21451:CDS | 35.0% | |
| TGATTCAATTGGTTGCGTAA+TGG | - | chr5.1:7540353-7540372 | None:intergenic | 35.0% | |
| TGCATGTTGAACAATAGAGA+AGG | + | chr5.1:7541513-7541532 | MS.gene21451:intron | 35.0% | |
| TTAAAACTATGGCAGGGAAT+AGG | - | chr5.1:7544331-7544350 | None:intergenic | 35.0% | |
| TTGAACAATAGAGAAGGTCT+AGG | + | chr5.1:7541519-7541538 | MS.gene21451:intron | 35.0% | |
| TTGACAGATCGCATACAAAA+TGG | + | chr5.1:7543309-7543328 | MS.gene21451:CDS | 35.0% | |
| ! | AATTTTGTAGAGGCTTGCAT+GGG | + | chr5.1:7543630-7543649 | MS.gene21451:intron | 35.0% |
| ! | ACTTTTCCTACAAACAAAGG+AGG | - | chr5.1:7543555-7543574 | None:intergenic | 35.0% |
| ! | AGGATCTAAGACATCCTTTA+TGG | - | chr5.1:7544311-7544330 | None:intergenic | 35.0% |
| ! | AGGATTCAAAGTTGCGATTT+TGG | + | chr5.1:7540486-7540505 | MS.gene21451:CDS | 35.0% |
| ! | ATTTGGTAATCATTCCTGCT+GGG | + | chr5.1:7541662-7541681 | MS.gene21451:CDS | 35.0% |
| ! | CGTACTTTTGATGCAAAGAA+TGG | - | chr5.1:7544460-7544479 | None:intergenic | 35.0% |
| ! | GATTTTACCTCTTCTTTCTC+AGG | + | chr5.1:7543143-7543162 | MS.gene21451:CDS | 35.0% |
| ! | GGATTCAAAGTTGCGATTTT+GGG | + | chr5.1:7540487-7540506 | MS.gene21451:CDS | 35.0% |
| ! | GTAATCATATGTGTCGTTGT+TGG | + | chr5.1:7540875-7540894 | MS.gene21451:intron | 35.0% |
| ! | GTTGATGAAGATGAATCCAT+TGG | + | chr5.1:7540543-7540562 | MS.gene21451:CDS | 35.0% |
| ! | TGACATGACTAAGACGATTT+TGG | + | chr5.1:7541580-7541599 | MS.gene21451:intron | 35.0% |
| ! | TTCTATGACATTGCTTGTTG+AGG | + | chr5.1:7542919-7542938 | MS.gene21451:intron | 35.0% |
| ! | TTTGCATCAAAAGTACGACT+TGG | + | chr5.1:7544463-7544482 | MS.gene21451:intron | 35.0% |
| !! | AAATCCCACCACTTATTTTC+AGG | - | chr5.1:7544729-7544748 | None:intergenic | 35.0% |
| !! | AAGTGAAAGCGTTATCCAAT+GGG | - | chr5.1:7542333-7542352 | None:intergenic | 35.0% |
| !! | ATGTGCATATGTTGATTCAC+AGG | + | chr5.1:7544263-7544282 | MS.gene21451:CDS | 35.0% |
| !!! | CTAAGACGATTTTGGTGTTT+AGG | + | chr5.1:7541588-7541607 | MS.gene21451:intron | 35.0% |
| !!! | TTTTTGTTTTAGGGCCTGTT+TGG | - | chr5.1:7541493-7541512 | None:intergenic | 35.0% |
| AAAGCTGGGCAGAAATTAGT+AGG | - | chr5.1:7541938-7541957 | None:intergenic | 40.0% | |
| AAGCAAAAGGAAGTTCGCAT+CGG | - | chr5.1:7542027-7542046 | None:intergenic | 40.0% | |
| AAGCATTCAAGCTTCGACTT+TGG | - | chr5.1:7544383-7544402 | None:intergenic | 40.0% | |
| AAGTTATGGGTCTTGATCCA+AGG | + | chr5.1:7543079-7543098 | MS.gene21451:CDS | 40.0% | |
| ACAGATCGCATACAAAATGG+GGG | + | chr5.1:7543312-7543331 | MS.gene21451:CDS | 40.0% | |
| AGACATCCTTTATGGAAAGC+AGG | - | chr5.1:7544303-7544322 | None:intergenic | 40.0% | |
| AGATCATCTCTTGTCATTCC+AGG | - | chr5.1:7541700-7541719 | None:intergenic | 40.0% | |
| AGCATTCAAGCTTCGACTTT+GGG | - | chr5.1:7544382-7544401 | None:intergenic | 40.0% | |
| AGGATCAATAGACATGGGTA+AGG | + | chr5.1:7542550-7542569 | MS.gene21451:intron | 40.0% | |
| AGTTATGGGTCTTGATCCAA+GGG | + | chr5.1:7543080-7543099 | MS.gene21451:CDS | 40.0% | |
| ATAGGAACAGTGGAGTTAAC+TGG | - | chr5.1:7541811-7541830 | None:intergenic | 40.0% | |
| ATCAATAGACATGGGTAAGG+AGG | + | chr5.1:7542553-7542572 | MS.gene21451:intron | 40.0% | |
| ATGTAAGCACAGATACTCCT+CGG | - | chr5.1:7540930-7540949 | None:intergenic | 40.0% | |
| ATTGCTTACGTGCTTAGGTA+TGG | + | chr5.1:7542284-7542303 | MS.gene21451:intron | 40.0% | |
| CAAAGTCCTGCTTTCCATAA+AGG | + | chr5.1:7544294-7544313 | MS.gene21451:intron | 40.0% | |
| CACATCCTGAAAATAAGTGG+TGG | + | chr5.1:7544721-7544740 | MS.gene21451:CDS | 40.0% | |
| CAGTTCAGAAGTTGGAATTC+TGG | + | chr5.1:7542804-7542823 | MS.gene21451:intron | 40.0% | |
| CCAACCATGTCCTTAGTATT+AGG | - | chr5.1:7542524-7542543 | None:intergenic | 40.0% | |
| CCTAATACTAAGGACATGGT+TGG | + | chr5.1:7542521-7542540 | MS.gene21451:intron | 40.0% | |
| CCTTGTTGGACCTAAAATTC+AGG | + | chr5.1:7543053-7543072 | MS.gene21451:intron | 40.0% | |
| CGGTGATAGAAACTGGAATT+AGG | - | chr5.1:7542862-7542881 | None:intergenic | 40.0% | |
| CTCTTGTCATTCCAGGTTTA+CGG | - | chr5.1:7541693-7541712 | None:intergenic | 40.0% | |
| CTGATATCAGAAGTAACACC+AGG | - | chr5.1:7540604-7540623 | None:intergenic | 40.0% | |
| CTGATCATGCTTGAAGCAAA+AGG | - | chr5.1:7542040-7542059 | None:intergenic | 40.0% | |
| GAAATCGGTCGCACATAAAA+TGG | - | chr5.1:7541313-7541332 | None:intergenic | 40.0% | |
| GAAATTCCTCAACTCCGTTA+CGG | - | chr5.1:7544489-7544508 | None:intergenic | 40.0% | |
| GACAGATCGCATACAAAATG+GGG | + | chr5.1:7543311-7543330 | MS.gene21451:CDS | 40.0% | |
| GAGGCTAATTGAATGTGAGT+TGG | + | chr5.1:7543587-7543606 | MS.gene21451:intron | 40.0% | |
| GGAGGGAATAATGGTAAAAG+GGG | + | chr5.1:7542571-7542590 | MS.gene21451:intron | 40.0% | |
| GTTGAGGAATTTCTTCCTCT+TGG | + | chr5.1:7544496-7544515 | MS.gene21451:intron | 40.0% | |
| TAACTCCACTGTTCCTATTG+CGG | + | chr5.1:7541813-7541832 | MS.gene21451:CDS | 40.0% | |
| TATGATCCCAAGAGACTGTT+GGG | + | chr5.1:7541862-7541881 | MS.gene21451:CDS | 40.0% | |
| TATTGGGGTGAATTCCATGT+GGG | + | chr5.1:7541282-7541301 | MS.gene21451:intron | 40.0% | |
| TCAATAGACATGGGTAAGGA+GGG | + | chr5.1:7542554-7542573 | MS.gene21451:intron | 40.0% | |
| TCTGTCTTGGTGGAATGTAT+CGG | + | chr5.1:7543726-7543745 | MS.gene21451:intron | 40.0% | |
| TCTTGTCATTCCAGGTTTAC+GGG | - | chr5.1:7541692-7541711 | None:intergenic | 40.0% | |
| TGCACTTACAGGTATGGATT+TGG | + | chr5.1:7541645-7541664 | MS.gene21451:CDS | 40.0% | |
| TGGATCTGCAACACTATCAA+TGG | + | chr5.1:7543896-7543915 | MS.gene21451:CDS | 40.0% | |
| TGTAATTCTGGCACTACTGA+TGG | - | chr5.1:7541113-7541132 | None:intergenic | 40.0% | |
| TGTTCAACGACAACTGTTAG+TGG | - | chr5.1:7544551-7544570 | None:intergenic | 40.0% | |
| TTATGATCCCAAGAGACTGT+TGG | + | chr5.1:7541861-7541880 | MS.gene21451:CDS | 40.0% | |
| TTATTGGGGTGAATTCCATG+TGG | + | chr5.1:7541281-7541300 | MS.gene21451:intron | 40.0% | |
| ! | AATTTTCTCTAGGCCAAAGC+TGG | + | chr5.1:7543870-7543889 | MS.gene21451:intron | 40.0% |
| ! | AGAAACTGGGTTGGAAAGAA+TGG | + | chr5.1:7542709-7542728 | MS.gene21451:intron | 40.0% |
| ! | GAAACTGGGTTGGAAAGAAT+GGG | + | chr5.1:7542710-7542729 | MS.gene21451:intron | 40.0% |
| ! | GAATTTTGTAGAGGCTTGCA+TGG | + | chr5.1:7543629-7543648 | MS.gene21451:intron | 40.0% |
| ! | GATTTGGTAATCATTCCTGC+TGG | + | chr5.1:7541661-7541680 | MS.gene21451:CDS | 40.0% |
| ! | GCTTGTTGCTAACTCTTTCT+TGG | - | chr5.1:7544659-7544678 | None:intergenic | 40.0% |
| ! | GTTTAGGTTCGAGGATTCTT+GGG | + | chr5.1:7541604-7541623 | MS.gene21451:intron | 40.0% |
| ! | TGTTTAGGTTCGAGGATTCT+TGG | + | chr5.1:7541603-7541622 | MS.gene21451:intron | 40.0% |
| ! | TTTAGGTTCGAGGATTCTTG+GGG | + | chr5.1:7541605-7541624 | MS.gene21451:intron | 40.0% |
| ! | TTTGGTAATCATTCCTGCTG+GGG | + | chr5.1:7541663-7541682 | MS.gene21451:CDS | 40.0% |
| !! | AATTTCCTTTGGGGTGAAAG+AGG | - | chr5.1:7543283-7543302 | None:intergenic | 40.0% |
| !! | CAAGTGAAAGCGTTATCCAA+TGG | - | chr5.1:7542334-7542353 | None:intergenic | 40.0% |
| !! | CCTGAATTTTAGGTCCAACA+AGG | - | chr5.1:7543056-7543075 | None:intergenic | 40.0% |
| !! | GCATATGTTGATTCACAGGT+AGG | + | chr5.1:7544267-7544286 | MS.gene21451:intron | 40.0% |
| !!! | GAAAAGTTTTGAGACTCGAG+AGG | + | chr5.1:7543568-7543587 | MS.gene21451:intron | 40.0% |
| !!! | GATTTTGGTGTTTAGGTTCG+AGG | + | chr5.1:7541595-7541614 | MS.gene21451:intron | 40.0% |
| AAACGTACCTTGAGATTGGG+AGG | - | chr5.1:7540311-7540330 | None:intergenic | 45.0% | |
| AAGGACATGGTTGGGAATAG+AGG | + | chr5.1:7542530-7542549 | MS.gene21451:intron | 45.0% | |
| AATGTTCATTGCCGTGCCAA+AGG | + | chr5.1:7540454-7540473 | MS.gene21451:CDS | 45.0% | |
| ACCTCTGCCACTCAAATTTC+AGG | + | chr5.1:7543245-7543264 | MS.gene21451:intron | 45.0% | |
| ACCTGAAATTTGAGTGGCAG+AGG | - | chr5.1:7543249-7543268 | None:intergenic | 45.0% | |
| AGCTTAGAACAATGCTGAGC+TGG | + | chr5.1:7542608-7542627 | MS.gene21451:intron | 45.0% | |
| ATGGTCGTATAACCACACGT+TGG | + | chr5.1:7542239-7542258 | MS.gene21451:intron | 45.0% | |
| ATGTGGATGTTCCTGTTGTC+GGG | + | chr5.1:7543103-7543122 | MS.gene21451:CDS | 45.0% | |
| ATGTTCATTGCCGTGCCAAA+GGG | + | chr5.1:7540455-7540474 | MS.gene21451:CDS | 45.0% | |
| ATTCTGGCACTACTGATGGA+AGG | - | chr5.1:7541109-7541128 | None:intergenic | 45.0% | |
| ATTTCGATCTCACAGCTGAC+AGG | - | chr5.1:7544756-7544775 | None:intergenic | 45.0% | |
| CAACAGGGCAAGTTTGGAAA+AGG | + | chr5.1:7544633-7544652 | MS.gene21451:intron | 45.0% | |
| CAATCTTGATCACCAACGTG+TGG | - | chr5.1:7542254-7542273 | None:intergenic | 45.0% | |
| CATGGGTAAGGAGGGAATAA+TGG | + | chr5.1:7542562-7542581 | MS.gene21451:intron | 45.0% | |
| CTACACACAGAGAGTGGTAT+CGG | + | chr5.1:7542363-7542382 | MS.gene21451:intron | 45.0% | |
| CTTGTCATTCCAGGTTTACG+GGG | - | chr5.1:7541691-7541710 | None:intergenic | 45.0% | |
| GAAAGAGTTAGCAACAAGCG+TGG | + | chr5.1:7544660-7544679 | MS.gene21451:CDS | 45.0% | |
| GACAATGCTTGACGTGGTTA+GGG | + | chr5.1:7541888-7541907 | MS.gene21451:CDS | 45.0% | |
| GACCCCTAATACTAAGGACA+TGG | + | chr5.1:7542517-7542536 | MS.gene21451:intron | 45.0% | |
| GACGTAACGGTGATAGAAAC+TGG | - | chr5.1:7542869-7542888 | None:intergenic | 45.0% | |
| GATGTGGATGTTCCTGTTGT+CGG | + | chr5.1:7543102-7543121 | MS.gene21451:CDS | 45.0% | |
| GATTGCAAAGCGATGTCCTA+AGG | + | chr5.1:7541762-7541781 | MS.gene21451:CDS | 45.0% | |
| GGACTAACAAAGTCTGTCGT+AGG | + | chr5.1:7544423-7544442 | MS.gene21451:intron | 45.0% | |
| GTCCCCTAAGTGATTATGAG+AGG | + | chr5.1:7544518-7544537 | MS.gene21451:intron | 45.0% | |
| TAATCACTTAGGGGACCAAG+AGG | - | chr5.1:7544514-7544533 | None:intergenic | 45.0% | |
| TACACACAGAGAGTGGTATC+GGG | + | chr5.1:7542364-7542383 | MS.gene21451:intron | 45.0% | |
| TATCGGACACGACATAGACA+CGG | + | chr5.1:7540816-7540835 | MS.gene21451:intron | 45.0% | |
| TGACAATGCTTGACGTGGTT+AGG | + | chr5.1:7541887-7541906 | MS.gene21451:CDS | 45.0% | |
| TGAGGATGCACTTACAGGTA+TGG | + | chr5.1:7541639-7541658 | MS.gene21451:CDS | 45.0% | |
| TTAGCAACAAGCGTGGAGAA+GGG | + | chr5.1:7544667-7544686 | MS.gene21451:CDS | 45.0% | |
| TTCAGACCGCCATAGTTGAT+AGG | - | chr5.1:7543448-7543467 | None:intergenic | 45.0% | |
| TTGAAAACCTCAGCCGCAAT+AGG | - | chr5.1:7541829-7541848 | None:intergenic | 45.0% | |
| TTTCGATCTCACAGCTGACA+GGG | - | chr5.1:7544755-7544774 | None:intergenic | 45.0% | |
| ! | AAAGTACGACTTGGCCGTAA+CGG | + | chr5.1:7544472-7544491 | MS.gene21451:intron | 45.0% |
| ! | ATATGTGCCACTGTTGTGTC+TGG | + | chr5.1:7541080-7541099 | MS.gene21451:intron | 45.0% |
| ! | GCTGAGGTTTTCAAAAGAGC+TGG | + | chr5.1:7541835-7541854 | MS.gene21451:CDS | 45.0% |
| ! | GTGTCCCACACTTTGGAAAT+CGG | - | chr5.1:7541328-7541347 | None:intergenic | 45.0% |
| ! | TCCTCGGATTAGGAGTGTAA+CGG | - | chr5.1:7540914-7540933 | None:intergenic | 45.0% |
| ! | TGCACTCCTCCTTTGTTTGT+AGG | + | chr5.1:7543546-7543565 | MS.gene21451:intron | 45.0% |
| !! | CACACGTTGGTGATCAAGAT+TGG | + | chr5.1:7542252-7542271 | MS.gene21451:intron | 45.0% |
| AAGGACACCAGACACAACAG+TGG | - | chr5.1:7541090-7541109 | None:intergenic | 50.0% | |
| ACAGGAACATCCACATCCCT+TGG | - | chr5.1:7543099-7543118 | None:intergenic | 50.0% | |
| ACCTTCCTCTTTCACCCCAA+AGG | + | chr5.1:7543275-7543294 | MS.gene21451:CDS | 50.0% | |
| ACGTAATGACAGGAAGGGTG+AGG | + | chr5.1:7542680-7542699 | MS.gene21451:intron | 50.0% | |
| AGAACAATGCTGAGCTGGCA+AGG | + | chr5.1:7542613-7542632 | MS.gene21451:intron | 50.0% | |
| CAGCTTGAGGATGCACTTAC+AGG | + | chr5.1:7541634-7541653 | MS.gene21451:CDS | 50.0% | |
| CCTCAATCCTCCCAATCTCA+AGG | + | chr5.1:7540301-7540320 | MS.gene21451:CDS | 50.0% | |
| CCTTGAGATTGGGAGGATTG+AGG | - | chr5.1:7540304-7540323 | None:intergenic | 50.0% | |
| CTTGGGGCAAAATCAGCTTG+AGG | + | chr5.1:7541621-7541640 | MS.gene21451:CDS | 50.0% | |
| GCACAGATACTCCTCGGATT+AGG | - | chr5.1:7540924-7540943 | None:intergenic | 50.0% | |
| GCATGTCTTCGTGCGTTGAA+AGG | + | chr5.1:7544222-7544241 | MS.gene21451:CDS | 50.0% | |
| GGTTAGGGCCAATACGTTTG+TGG | + | chr5.1:7541903-7541922 | MS.gene21451:CDS | 50.0% | |
| GTATCGTGAGCTAAGCGTCA+TGG | + | chr5.1:7542220-7542239 | MS.gene21451:intron | 50.0% | |
| GTCACTCCCAACAGTCTCTT+GGG | - | chr5.1:7541871-7541890 | None:intergenic | 50.0% | |
| GTGCAGACCTGAGAAAGAAG+AGG | - | chr5.1:7543153-7543172 | None:intergenic | 50.0% | |
| GTTAGCAACAAGCGTGGAGA+AGG | + | chr5.1:7544666-7544685 | MS.gene21451:CDS | 50.0% | |
| TCCGTTACACTCCTAATCCG+AGG | + | chr5.1:7540910-7540929 | MS.gene21451:intron | 50.0% | |
| TCTTCGTGCGTTGAAAGGAG+AGG | + | chr5.1:7544227-7544246 | MS.gene21451:CDS | 50.0% | |
| TGAGATTGGGAGGATTGAGG+TGG | - | chr5.1:7540301-7540320 | None:intergenic | 50.0% | |
| TGGGGGAACAGAAGTTGTTG+AGG | + | chr5.1:7543329-7543348 | MS.gene21451:CDS | 50.0% | |
| TGTCACTCCCAACAGTCTCT+TGG | - | chr5.1:7541872-7541891 | None:intergenic | 50.0% | |
| TGTGGATGTTCCTGTTGTCG+GGG | + | chr5.1:7543104-7543123 | MS.gene21451:CDS | 50.0% | |
| TGTTCATTGCCGTGCCAAAG+GGG | + | chr5.1:7540456-7540475 | MS.gene21451:CDS | 50.0% | |
| ! | CACTTGCTACACACAGAGAG+TGG | + | chr5.1:7542357-7542376 | MS.gene21451:intron | 50.0% |
| ! | CGTGCTTAGGTATGGTTCTG+TGG | + | chr5.1:7542292-7542311 | MS.gene21451:intron | 50.0% |
| ! | GCGACCGATTTCCAAAGTGT+GGG | + | chr5.1:7541321-7541340 | MS.gene21451:intron | 50.0% |
| ! | TGCGACCGATTTCCAAAGTG+TGG | + | chr5.1:7541320-7541339 | MS.gene21451:intron | 50.0% |
| ! | TTTGGGGTGAAAGAGGAAGG+TGG | - | chr5.1:7543276-7543295 | None:intergenic | 50.0% |
| !! | TCCTTTGGGGTGAAAGAGGA+AGG | - | chr5.1:7543279-7543298 | None:intergenic | 50.0% |
| AATGACAGGAAGGGTGAGGC+TGG | + | chr5.1:7542684-7542703 | MS.gene21451:intron | 55.0% | |
| AGCAGAGAGGCTGGAGTAGT+AGG | + | chr5.1:7543517-7543536 | MS.gene21451:intron | 55.0% | |
| AGCTGGCAAGGAGTTGTGGA+TGG | + | chr5.1:7542625-7542644 | MS.gene21451:intron | 55.0% | |
| ATGACAGGAAGGGTGAGGCT+GGG | + | chr5.1:7542685-7542704 | MS.gene21451:intron | 55.0% | |
| ATTGGGAGGATTGAGGTGGC+TGG | - | chr5.1:7540297-7540316 | None:intergenic | 55.0% | |
| CACTGTTCCTATTGCGGCTG+AGG | + | chr5.1:7541819-7541838 | MS.gene21451:CDS | 55.0% | |
| CTCAGCCGCAATAGGAACAG+TGG | - | chr5.1:7541821-7541840 | None:intergenic | 55.0% | |
| GAATCCTGGTGATCCCCCTT+TGG | - | chr5.1:7540473-7540492 | None:intergenic | 55.0% | |
| GGGAGTGACAATGCTTGACG+TGG | + | chr5.1:7541882-7541901 | MS.gene21451:CDS | 55.0% | |
| GGGTCTTGATCCAAGGGATG+TGG | + | chr5.1:7543086-7543105 | MS.gene21451:CDS | 55.0% | |
| GTGGATGTTCCTGTTGTCGG+GGG | + | chr5.1:7543105-7543124 | MS.gene21451:CDS | 55.0% | |
| GTTCATTGCCGTGCCAAAGG+GGG | + | chr5.1:7540457-7540476 | MS.gene21451:CDS | 55.0% | |
| TCAAGGCGTGTCCCACACTT+TGG | - | chr5.1:7541335-7541354 | None:intergenic | 55.0% | |
| TGCAGATCCAGCTCCAGCTT+TGG | - | chr5.1:7543886-7543905 | None:intergenic | 55.0% | |
| ! | ACTTGGCCGTAACGGAGTTG+AGG | + | chr5.1:7544480-7544499 | MS.gene21451:intron | 55.0% |
| !! | GTTGCGATTTTGGGTGCTGC+TGG | + | chr5.1:7540496-7540515 | MS.gene21451:CDS | 55.0% |
| AGGCTGGGCAGAAACTGGGT+TGG | + | chr5.1:7542700-7542719 | MS.gene21451:intron | 60.0% | |
| CTCTAGGCCAAAGCTGGAGC+TGG | + | chr5.1:7543876-7543895 | MS.gene21451:intron | 60.0% | |
| CTGGTGATCCCCCTTTGGCA+CGG | - | chr5.1:7540468-7540487 | None:intergenic | 60.0% | |
| GCTGAGCTGGCAAGGAGTTG+TGG | + | chr5.1:7542621-7542640 | MS.gene21451:intron | 60.0% | |
| GGTGAGGCTGGGCAGAAACT+GGG | + | chr5.1:7542696-7542715 | MS.gene21451:intron | 60.0% | |
| GGTGGTGAGAGACAGCAGAG+AGG | + | chr5.1:7543504-7543523 | MS.gene21451:intron | 60.0% | |
| GTGAGAGACAGCAGAGAGGC+TGG | + | chr5.1:7543508-7543527 | MS.gene21451:intron | 60.0% | |
| !! | TTGGGTGCTGCTGGTGGCAT+AGG | + | chr5.1:7540505-7540524 | MS.gene21451:CDS | 60.0% |
| !!! | GCGATTTTGGGTGCTGCTGG+TGG | + | chr5.1:7540499-7540518 | MS.gene21451:CDS | 60.0% |
| CCTGTTGTCGGGGGACATGC+CGG | + | chr5.1:7543114-7543133 | MS.gene21451:CDS | 65.0% | |
| CGTGCCAAAGGGGGATCACC+AGG | + | chr5.1:7540466-7540485 | MS.gene21451:CDS | 65.0% | |
| GCTGGGGTTCCCCGTAAACC+TGG | + | chr5.1:7541679-7541698 | MS.gene21451:CDS | 65.0% | |
| GGGTGAGGCTGGGCAGAAAC+TGG | + | chr5.1:7542695-7542714 | MS.gene21451:intron | 65.0% | |
| GGTTTACGGGGAACCCCAGC+AGG | - | chr5.1:7541679-7541698 | None:intergenic | 65.0% | |
| CCGGCATGTCCCCCGACAAC+AGG | - | chr5.1:7543117-7543136 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 7540251 | 7544785 | 7540251 | ID=MS.gene21451 |
| chr5.1 | mRNA | 7540251 | 7544785 | 7540251 | ID=MS.gene21451.t1;Parent=MS.gene21451 |
| chr5.1 | exon | 7540251 | 7540322 | 7540251 | ID=MS.gene21451.t1.exon1;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7540251 | 7540322 | 7540251 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| chr5.1 | exon | 7540424 | 7540645 | 7540424 | ID=MS.gene21451.t1.exon2;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7540424 | 7540645 | 7540424 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| chr5.1 | exon | 7541610 | 7541924 | 7541610 | ID=MS.gene21451.t1.exon3;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7541610 | 7541924 | 7541610 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| chr5.1 | exon | 7543075 | 7543164 | 7543075 | ID=MS.gene21451.t1.exon4;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7543075 | 7543164 | 7543075 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| chr5.1 | exon | 7543267 | 7543350 | 7543267 | ID=MS.gene21451.t1.exon5;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7543267 | 7543350 | 7543267 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| chr5.1 | exon | 7543882 | 7543917 | 7543882 | ID=MS.gene21451.t1.exon6;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7543882 | 7543917 | 7543882 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| chr5.1 | exon | 7544195 | 7544284 | 7544195 | ID=MS.gene21451.t1.exon7;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7544195 | 7544284 | 7544195 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| chr5.1 | exon | 7544639 | 7544785 | 7544639 | ID=MS.gene21451.t1.exon8;Parent=MS.gene21451.t1 |
| chr5.1 | CDS | 7544639 | 7544785 | 7544639 | ID=cds.MS.gene21451.t1;Parent=MS.gene21451.t1 |
| Gene Sequence |
| Protein sequence |
