Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059657.t1 | XP_003611508.1 | 98.8 | 334 | 4 | 0 | 1 | 334 | 1 | 334 | 9.50E-185 | 656 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059657.t1 | P19446 | 83.2 | 334 | 54 | 1 | 1 | 334 | 1 | 332 | 3.2e-157 | 555.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059657.t1 | G7K140 | 98.8 | 334 | 4 | 0 | 1 | 334 | 1 | 334 | 6.8e-185 | 656.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059657 | MS.gene21450 | 0.903225 | 4.32E-79 | -1.69E-46 |
| MS.gene059657 | MS.gene21451 | 0.830541 | 2.77E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059657 | MS.gene40108 | PPI |
| MS.gene059657 | MS.gene09966 | PPI |
| MS.gene059657 | MS.gene21162 | PPI |
| MS.gene059657 | MS.gene015443 | PPI |
| MS.gene059657 | MS.gene40601 | PPI |
| MS.gene059657 | MS.gene053632 | PPI |
| MS.gene059657 | MS.gene025802 | PPI |
| MS.gene059657 | MS.gene028531 | PPI |
| MS.gene059657 | MS.gene025803 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059657.t1 | MTR_5g014710 | 98.802 | 334 | 4 | 0 | 1 | 334 | 1 | 334 | 0.0 | 677 |
| MS.gene059657.t1 | MTR_4g092690 | 80.838 | 334 | 62 | 1 | 1 | 334 | 1 | 332 | 0.0 | 556 |
| MS.gene059657.t1 | MTR_8g463760 | 66.667 | 291 | 96 | 1 | 45 | 334 | 29 | 319 | 1.17e-137 | 394 |
| MS.gene059657.t1 | MTR_8g463760 | 70.000 | 190 | 57 | 0 | 45 | 234 | 29 | 218 | 1.14e-90 | 271 |
| MS.gene059657.t1 | MTR_2g021700 | 80.000 | 60 | 12 | 0 | 204 | 263 | 43 | 102 | 3.77e-27 | 104 |
| MS.gene059657.t1 | MTR_2g045010 | 80.000 | 60 | 12 | 0 | 204 | 263 | 43 | 102 | 3.77e-27 | 104 |
| MS.gene059657.t1 | MTR_4g033285 | 81.481 | 54 | 10 | 0 | 204 | 257 | 43 | 96 | 2.96e-24 | 95.1 |
| MS.gene059657.t1 | MTR_5g012390 | 24.710 | 259 | 160 | 11 | 48 | 286 | 39 | 282 | 8.60e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059657.t1 | AT2G22780 | 84.098 | 327 | 52 | 0 | 8 | 334 | 4 | 330 | 0.0 | 563 |
| MS.gene059657.t1 | AT5G09660 | 79.042 | 334 | 66 | 1 | 1 | 334 | 1 | 330 | 0.0 | 521 |
| MS.gene059657.t1 | AT5G09660 | 78.743 | 334 | 66 | 2 | 1 | 334 | 1 | 329 | 0.0 | 514 |
| MS.gene059657.t1 | AT5G09660 | 82.143 | 308 | 55 | 0 | 27 | 334 | 2 | 309 | 0.0 | 505 |
| MS.gene059657.t1 | AT5G09660 | 79.934 | 304 | 57 | 1 | 1 | 304 | 1 | 300 | 1.48e-169 | 476 |
| MS.gene059657.t1 | AT5G09660 | 83.453 | 278 | 46 | 0 | 27 | 304 | 2 | 279 | 5.01e-164 | 461 |
| MS.gene059657.t1 | AT1G53240 | 67.458 | 295 | 96 | 0 | 40 | 334 | 23 | 317 | 1.62e-143 | 409 |
| MS.gene059657.t1 | AT3G15020 | 68.621 | 290 | 91 | 0 | 45 | 334 | 28 | 317 | 2.31e-142 | 406 |
| MS.gene059657.t1 | AT3G47520 | 64.483 | 290 | 101 | 1 | 47 | 334 | 83 | 372 | 2.25e-136 | 393 |
| MS.gene059657.t1 | AT3G15020 | 67.518 | 274 | 89 | 0 | 45 | 318 | 28 | 301 | 2.33e-131 | 377 |
Find 0 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAATATAAATAGAT+GGG | + | 38017:11235-11254 | MS.gene059657:intron | 10.0% |
| !!! | TTATTTTGAATATAAATAGA+TGG | + | 38017:11234-11253 | MS.gene059657:intron | 10.0% |
| !! | AAGTAAGAAATTAAATCTTT+GGG | + | 38017:9406-9425 | MS.gene059657:intron | 15.0% |
| !! | TAAGTAAGAAATTAAATCTT+TGG | + | 38017:9405-9424 | MS.gene059657:intron | 15.0% |
| !! | TTAATTCCATTAATAAGTAT+AGG | - | 38017:11271-11290 | MS.gene059657:intergenic | 15.0% |
| !! | TTATTTCGTGATTTATAATT+TGG | + | 38017:7972-7991 | MS.gene059657:intron | 15.0% |
| !!! | ATATGTTGACTTAAATTATA+TGG | + | 38017:10790-10809 | MS.gene059657:intron | 15.0% |
| !!! | ATTAGAATCTTTTAAAACTA+TGG | - | 38017:11650-11669 | MS.gene059657:intergenic | 15.0% |
| !! | AACATTGGAATATTAGATAT+CGG | - | 38017:10708-10727 | MS.gene059657:intergenic | 20.0% |
| !! | AATCTTAAAAATACTTTAGC+TGG | + | 38017:9778-9797 | MS.gene059657:intron | 20.0% |
| !! | ACATATAAGAAAAACAATTG+TGG | + | 38017:11328-11347 | MS.gene059657:intron | 20.0% |
| !! | ACTCAAGTAATTAATATTGT+TGG | + | 38017:9738-9757 | MS.gene059657:intron | 20.0% |
| !! | ATTCAAAGATCATCATAAAT+TGG | - | 38017:9446-9465 | MS.gene059657:intergenic | 20.0% |
| !! | ATTTGTGCAAATTTGATTAT+CGG | + | 38017:8106-8125 | MS.gene059657:intron | 20.0% |
| !! | CCAAAAAAGTAATAAATGAA+TGG | + | 38017:11297-11316 | MS.gene059657:intron | 20.0% |
| !! | TTTATGATGATCTTTGAATA+TGG | + | 38017:9447-9466 | MS.gene059657:intron | 20.0% |
| !!! | ATTTCTTACTTAAAGTATCA+TGG | - | 38017:9397-9416 | MS.gene059657:intergenic | 20.0% |
| !!! | CCATTCATTTATTACTTTTT+TGG | - | 38017:11300-11319 | MS.gene059657:intergenic | 20.0% |
| !!! | CTTATTTTTATAAGAGTGTT+AGG | - | 38017:8705-8724 | MS.gene059657:intergenic | 20.0% |
| !!! | CTTTAATTTTTCTATATGCA+GGG | + | 38017:10972-10991 | MS.gene059657:intron | 20.0% |
| !!! | TATTTTATTAGGTGAAATCA+AGG | - | 38017:8659-8678 | MS.gene059657:intergenic | 20.0% |
| !!! | TGAATAAGTACTTTTTCTTA+AGG | + | 38017:11710-11729 | MS.gene059657:intron | 20.0% |
| !!! | TTGTTACCATATTTGATTTT+AGG | + | 38017:10502-10521 | MS.gene059657:intron | 20.0% |
| !!! | TTTCTTACTTAAAGTATCAT+GGG | - | 38017:9396-9415 | MS.gene059657:intergenic | 20.0% |
| ! | ACAAAAACTAGATGATTAGA+TGG | - | 38017:10198-10217 | MS.gene059657:intergenic | 25.0% |
| ! | ATCTCTTCAATATTAATGCT+GGG | + | 38017:9023-9042 | MS.gene059657:CDS | 25.0% |
| ! | CATATATACTTGTATAGCAT+AGG | - | 38017:11080-11099 | MS.gene059657:intergenic | 25.0% |
| ! | CTAAATAATCAAATCCAAAC+AGG | + | 38017:8783-8802 | MS.gene059657:intron | 25.0% |
| ! | TGGATACACAACTTAATTAA+GGG | + | 38017:8271-8290 | MS.gene059657:intron | 25.0% |
| ! | TTGAAAATACTAATCTGTCT+TGG | + | 38017:11020-11039 | MS.gene059657:intron | 25.0% |
| ! | TTGGATACACAACTTAATTA+AGG | + | 38017:8270-8289 | MS.gene059657:intron | 25.0% |
| !! | AAAACTTTTCCTACAAACAA+AGG | - | 38017:10865-10884 | MS.gene059657:intergenic | 25.0% |
| !! | ACAATGTTGTAATTTTCTCT+AGG | + | 38017:11168-11187 | MS.gene059657:intron | 25.0% |
| !! | ATTTGATTATTTAGCTTCGA+GGG | - | 38017:8777-8796 | MS.gene059657:intergenic | 25.0% |
| !! | CTAACACTCACTATTTTATT+AGG | - | 38017:8670-8689 | MS.gene059657:intergenic | 25.0% |
| !! | CTATGGATTATCTATACATT+TGG | + | 38017:11133-11152 | MS.gene059657:intron | 25.0% |
| !! | GCTTGATAGTTTATAAAAAG+AGG | + | 38017:8533-8552 | MS.gene059657:intron | 25.0% |
| !!! | AAAATACTGCAGTTTTTTCA+AGG | - | 38017:10056-10075 | MS.gene059657:intergenic | 25.0% |
| !!! | AAATACTGCAGTTTTTTCAA+GGG | - | 38017:10055-10074 | MS.gene059657:intergenic | 25.0% |
| !!! | AAATGCTTTGAATTTTGTAG+AGG | + | 38017:10927-10946 | MS.gene059657:intron | 25.0% |
| !!! | AATCTTTTAAAACTATGGCA+GGG | - | 38017:11645-11664 | MS.gene059657:intergenic | 25.0% |
| !!! | CAACATGCATTTTTGTTTTA+GGG | - | 38017:8809-8828 | MS.gene059657:intergenic | 25.0% |
| !!! | CTTTTTTGAAATTTCGTTCT+TGG | + | 38017:11397-11416 | MS.gene059657:intron | 25.0% |
| !!! | GCTTTAATTTTTCTATATGC+AGG | + | 38017:10971-10990 | MS.gene059657:intron | 25.0% |
| !!! | TCAACATGCATTTTTGTTTT+AGG | - | 38017:8810-8829 | MS.gene059657:intergenic | 25.0% |
| !!! | TGTTGACTTAAATTATATGG+TGG | + | 38017:10793-10812 | MS.gene059657:intron | 25.0% |
| AAAATACTAATCTGTCTTGG+TGG | + | 38017:11023-11042 | MS.gene059657:intron | 30.0% | |
| AAAATTCAGGCTGAAGTTAT+GGG | + | 38017:10373-10392 | MS.gene059657:intron | 30.0% | |
| AATAGAGGATCAATAGACAT+GGG | + | 38017:9852-9871 | MS.gene059657:intron | 30.0% | |
| AATTCACCCCAATAAAAAAG+TGG | - | 38017:8583-8602 | MS.gene059657:intergenic | 30.0% | |
| ACTTCATTTATTCTCCTTGT+TGG | + | 38017:10346-10365 | MS.gene059657:intron | 30.0% | |
| ACTTTGTCATTGAATCTTTC+TGG | + | 38017:8070-8089 | MS.gene059657:intron | 30.0% | |
| ATATGATTCCTTCATTGCTA+TGG | + | 38017:11116-11135 | MS.gene059657:intron | 30.0% | |
| ATCTTCATCAACATAGAAAG+AGG | - | 38017:7842-7861 | MS.gene059657:intergenic | 30.0% | |
| ATTCACCCCAATAAAAAAGT+GGG | - | 38017:8582-8601 | MS.gene059657:intergenic | 30.0% | |
| CGTGAATTTGCATATGAATT+TGG | - | 38017:7567-7586 | MS.gene059657:intergenic | 30.0% | |
| CTTTGTCATTGAATCTTTCT+GGG | + | 38017:8071-8090 | MS.gene059657:intron | 30.0% | |
| GATACTATTAACGTAATGAC+AGG | + | 38017:9977-9996 | MS.gene059657:intron | 30.0% | |
| GATCTCTTCAATATTAATGC+TGG | + | 38017:9022-9041 | MS.gene059657:CDS | 30.0% | |
| GATGAGTAATGATTGAACAT+TGG | - | 38017:10723-10742 | MS.gene059657:intergenic | 30.0% | |
| GTTATGTAGATGAATGAACA+TGG | + | 38017:7722-7741 | MS.gene059657:intron | 30.0% | |
| TAAAATTCAGGCTGAAGTTA+TGG | + | 38017:10372-10391 | MS.gene059657:intron | 30.0% | |
| TAAGTGTAGCATAAAAAGCT+GGG | - | 38017:9259-9278 | MS.gene059657:intergenic | 30.0% | |
| TACAATATCAGTTCAGAAGT+TGG | + | 38017:10103-10122 | MS.gene059657:intron | 30.0% | |
| TAGATAATCCATAGCAATGA+AGG | - | 38017:11127-11146 | MS.gene059657:intergenic | 30.0% | |
| TATTAACGTAATGACAGGAA+GGG | + | 38017:9982-10001 | MS.gene059657:intron | 30.0% | |
| TCAAGTACTCAATTTCCTTT+GGG | - | 38017:10600-10619 | MS.gene059657:intergenic | 30.0% | |
| TCATGACTTCTTAACAATGT+TGG | + | 38017:11441-11460 | MS.gene059657:intron | 30.0% | |
| TGAGAGCCTATACTTATTAA+TGG | + | 38017:11262-11281 | MS.gene059657:intron | 30.0% | |
| TGCAGACCTAAAATCAAATA+TGG | - | 38017:10511-10530 | MS.gene059657:intergenic | 30.0% | |
| TGCTATAAGTTCTGTAATTC+TGG | - | 38017:8432-8451 | MS.gene059657:intergenic | 30.0% | |
| TGTTCTTTACCTATCAACTA+TGG | + | 38017:10743-10762 | MS.gene059657:intron | 30.0% | |
| TTACATTGTAAGGTTCTGTT+TGG | + | 38017:8251-8270 | MS.gene059657:intron | 30.0% | |
| TTTATAGACCCCTAATACTA+AGG | + | 38017:9818-9837 | MS.gene059657:intron | 30.0% | |
| ! | ATAACTTCAGCCTGAATTTT+AGG | - | 38017:10373-10392 | MS.gene059657:intergenic | 30.0% |
| ! | GATTTGATTATTTAGCTTCG+AGG | - | 38017:8778-8797 | MS.gene059657:intergenic | 30.0% |
| ! | TGAAGAGCAATAGTTTCTTT+TGG | + | 38017:9715-9734 | MS.gene059657:intron | 30.0% |
| ! | TTAAATCTTTGGGCAAGTTT+TGG | + | 38017:9416-9435 | MS.gene059657:intron | 30.0% |
| !! | AGTGTCATTGTTGATTCAAT+TGG | - | 38017:7671-7690 | MS.gene059657:intergenic | 30.0% |
| !!! | CTAACACCCACTTTTTTATT+GGG | + | 38017:8573-8592 | MS.gene059657:intron | 30.0% |
| !!! | GAATCTTTTAAAACTATGGC+AGG | - | 38017:11646-11665 | MS.gene059657:intergenic | 30.0% |
| !!! | TAACACCCACTTTTTTATTG+GGG | + | 38017:8574-8593 | MS.gene059657:intron | 30.0% |
| !!! | TCTAACACCCACTTTTTTAT+TGG | + | 38017:8572-8591 | MS.gene059657:intron | 30.0% |
| AAAATCGCAACTTTGAATCC+TGG | - | 38017:7794-7813 | MS.gene059657:intergenic | 35.0% | |
| AACCATGTCCTTAGTATTAG+GGG | - | 38017:9829-9848 | MS.gene059657:intergenic | 35.0% | |
| AACGAATCACTACACGTATA+TGG | - | 38017:8024-8043 | MS.gene059657:intergenic | 35.0% | |
| AAGAGGTAAAATCGTGATTC+CGG | - | 38017:10443-10462 | MS.gene059657:intergenic | 35.0% | |
| AAGGAGGGAATAATGGTAAA+AGG | + | 38017:9876-9895 | MS.gene059657:intron | 35.0% | |
| AAGTGAGCATATTTGTGAGA+AGG | + | 38017:9505-9524 | MS.gene059657:intron | 35.0% | |
| ACGAATCACTACACGTATAT+GGG | - | 38017:8023-8042 | MS.gene059657:intergenic | 35.0% | |
| ACTAAATTGCTTACGTGCTT+AGG | + | 38017:9586-9605 | MS.gene059657:intron | 35.0% | |
| AGATGAAGAACAGAAACCAA+TGG | - | 38017:7869-7888 | MS.gene059657:intergenic | 35.0% | |
| AGATGATTAGATGGACGTAA+CGG | - | 38017:10189-10208 | MS.gene059657:intergenic | 35.0% | |
| AGGAGGGAATAATGGTAAAA+GGG | + | 38017:9877-9896 | MS.gene059657:intron | 35.0% | |
| ATAAAATGGTGAAACCCACA+TGG | - | 38017:8606-8625 | MS.gene059657:intergenic | 35.0% | |
| ATCAAGTTTACAATCGCCTT+AGG | - | 38017:9088-9107 | MS.gene059657:intergenic | 35.0% | |
| ATGTAGATGAATGAACATGG+TGG | + | 38017:7725-7744 | MS.gene059657:intron | 35.0% | |
| CAACCATGTCCTTAGTATTA+GGG | - | 38017:9830-9849 | MS.gene059657:intergenic | 35.0% | |
| CAAGTACTCAATTTCCTTTG+GGG | - | 38017:10599-10618 | MS.gene059657:intergenic | 35.0% | |
| CATACATACCACAAACGTAT+TGG | - | 38017:9221-9240 | MS.gene059657:intergenic | 35.0% | |
| CGAAGATTAAATCATCCCAT+TGG | + | 38017:9622-9641 | MS.gene059657:intron | 35.0% | |
| CTAATACTAAGGACATGGTT+GGG | + | 38017:9829-9848 | MS.gene059657:intron | 35.0% | |
| CTATTAACGTAATGACAGGA+AGG | + | 38017:9981-10000 | MS.gene059657:intron | 35.0% | |
| GAAAAACGTACCTTGAGATT+GGG | - | 38017:7621-7640 | MS.gene059657:intergenic | 35.0% | |
| GAATAGAGGATCAATAGACA+TGG | + | 38017:9851-9870 | MS.gene059657:intron | 35.0% | |
| GCTACACTTACATCATAACT+AGG | + | 38017:9269-9288 | MS.gene059657:intron | 35.0% | |
| GCTTGCATGGGAAAAAATTT+AGG | + | 38017:10949-10968 | MS.gene059657:intron | 35.0% | |
| GGTTTAACCTGAAATTTGAG+TGG | - | 38017:10562-10581 | MS.gene059657:intergenic | 35.0% | |
| GTAAGTGTAGCATAAAAAGC+TGG | - | 38017:9260-9279 | MS.gene059657:intergenic | 35.0% | |
| GTATCTGTGCTTACATTGTA+AGG | + | 38017:8241-8260 | MS.gene059657:intron | 35.0% | |
| GTCAAGTACTCAATTTCCTT+TGG | - | 38017:10601-10620 | MS.gene059657:intergenic | 35.0% | |
| GTGATTCGTTGTCATGAATT+TGG | + | 38017:8034-8053 | MS.gene059657:intron | 35.0% | |
| TACTTCTGATATCTGTCACA+TGG | + | 38017:7916-7935 | MS.gene059657:CDS | 35.0% | |
| TATGATGTCGTTAATACTCC+TGG | + | 38017:7890-7909 | MS.gene059657:CDS | 35.0% | |
| TCAACTGTTTCATAAAGTGC+AGG | + | 38017:11481-11500 | MS.gene059657:intron | 35.0% | |
| TCACATATTGTATCGTAGTG+TGG | + | 38017:10292-10311 | MS.gene059657:intron | 35.0% | |
| TCACTTTATACGTGTAACTG+CGG | - | 38017:9491-9510 | MS.gene059657:intergenic | 35.0% | |
| TCTTTACCTATCAACTATGG+CGG | + | 38017:10746-10765 | MS.gene059657:intron | 35.0% | |
| TGAAAAACGTACCTTGAGAT+TGG | - | 38017:7622-7641 | MS.gene059657:intergenic | 35.0% | |
| TGACAGATCGCATACAAAAT+GGG | + | 38017:10617-10636 | MS.gene059657:CDS | 35.0% | |
| TGATTCAATTGGTTGCGTAA+TGG | - | 38017:7660-7679 | MS.gene059657:intergenic | 35.0% | |
| TGCATGTTGAACAATAGAGA+AGG | + | 38017:8820-8839 | MS.gene059657:intron | 35.0% | |
| TTAAAACTATGGCAGGGAAT+AGG | - | 38017:11639-11658 | MS.gene059657:intergenic | 35.0% | |
| TTGAACAATAGAGAAGGTCT+AGG | + | 38017:8826-8845 | MS.gene059657:intron | 35.0% | |
| TTGACAGATCGCATACAAAA+TGG | + | 38017:10616-10635 | MS.gene059657:CDS | 35.0% | |
| ! | AATTTTGTAGAGGCTTGCAT+GGG | + | 38017:10937-10956 | MS.gene059657:intron | 35.0% |
| ! | ACTTTTCCTACAAACAAAGG+AGG | - | 38017:10862-10881 | MS.gene059657:intergenic | 35.0% |
| ! | AGGATCTAAGACATCCTTTA+TGG | - | 38017:11619-11638 | MS.gene059657:intergenic | 35.0% |
| ! | AGGATTCAAAGTTGCGATTT+TGG | + | 38017:7793-7812 | MS.gene059657:CDS | 35.0% |
| ! | ATTTGGTAATCATTCCTGCT+GGG | + | 38017:8969-8988 | MS.gene059657:CDS | 35.0% |
| ! | CGTACTTTTGATGCAAAGAA+TGG | - | 38017:11768-11787 | MS.gene059657:intergenic | 35.0% |
| ! | GATTTTACCTCTTCTTTCTC+AGG | + | 38017:10450-10469 | MS.gene059657:CDS | 35.0% |
| ! | GGATTCAAAGTTGCGATTTT+GGG | + | 38017:7794-7813 | MS.gene059657:CDS | 35.0% |
| ! | GTAATCATATGTGTCGTTGT+TGG | + | 38017:8182-8201 | MS.gene059657:intron | 35.0% |
| ! | GTTGATGAAGATGAATCCAT+TGG | + | 38017:7850-7869 | MS.gene059657:CDS | 35.0% |
| ! | TGACATGACTAAGACGATTT+TGG | + | 38017:8887-8906 | MS.gene059657:intron | 35.0% |
| ! | TTCTATGACATTGCTTGTTG+AGG | + | 38017:10226-10245 | MS.gene059657:intron | 35.0% |
| ! | TTTGCATCAAAAGTACGACT+TGG | + | 38017:11771-11790 | MS.gene059657:CDS | 35.0% |
| !! | AAGTGAAAGCGTTATCCAAT+GGG | - | 38017:9640-9659 | MS.gene059657:intergenic | 35.0% |
| !! | ATGTGCATATGTTGATTCAC+AGG | + | 38017:11571-11590 | MS.gene059657:CDS | 35.0% |
| !!! | CTAAGACGATTTTGGTGTTT+AGG | + | 38017:8895-8914 | MS.gene059657:intron | 35.0% |
| !!! | TTTTTGTTTTAGGGCCTGTT+TGG | - | 38017:8800-8819 | MS.gene059657:intergenic | 35.0% |
| AAAGCTGGGCAGAAATTAGT+AGG | - | 38017:9245-9264 | MS.gene059657:intergenic | 40.0% | |
| AAGCAAAAGGAAGTTCGCAT+CGG | - | 38017:9334-9353 | MS.gene059657:intergenic | 40.0% | |
| AAGCATTCAAGCTTCGACTT+TGG | - | 38017:11691-11710 | MS.gene059657:intergenic | 40.0% | |
| AAGTTATGGGTCTTGATCCA+AGG | + | 38017:10386-10405 | MS.gene059657:CDS | 40.0% | |
| ACAGATCGCATACAAAATGG+GGG | + | 38017:10619-10638 | MS.gene059657:CDS | 40.0% | |
| AGACATCCTTTATGGAAAGC+AGG | - | 38017:11611-11630 | MS.gene059657:intergenic | 40.0% | |
| AGATCATCTCTTGTCATTCC+AGG | - | 38017:9007-9026 | MS.gene059657:intergenic | 40.0% | |
| AGCATTCAAGCTTCGACTTT+GGG | - | 38017:11690-11709 | MS.gene059657:intergenic | 40.0% | |
| AGGATCAATAGACATGGGTA+AGG | + | 38017:9857-9876 | MS.gene059657:intron | 40.0% | |
| AGTTATGGGTCTTGATCCAA+GGG | + | 38017:10387-10406 | MS.gene059657:CDS | 40.0% | |
| ATAGGAACAGTGGAGTTAAC+TGG | - | 38017:9118-9137 | MS.gene059657:intergenic | 40.0% | |
| ATCAATAGACATGGGTAAGG+AGG | + | 38017:9860-9879 | MS.gene059657:intron | 40.0% | |
| ATGTAAGCACAGATACTCCT+CGG | - | 38017:8237-8256 | MS.gene059657:intergenic | 40.0% | |
| ATTGCTTACGTGCTTAGGTA+TGG | + | 38017:9591-9610 | MS.gene059657:intron | 40.0% | |
| CAAAGTCCTGCTTTCCATAA+AGG | + | 38017:11602-11621 | MS.gene059657:intron | 40.0% | |
| CAGATATCAGAAGTAACACC+AGG | - | 38017:7911-7930 | MS.gene059657:intergenic | 40.0% | |
| CAGTTCAGAAGTTGGAATTC+TGG | + | 38017:10111-10130 | MS.gene059657:intron | 40.0% | |
| CCAACCATGTCCTTAGTATT+AGG | - | 38017:9831-9850 | MS.gene059657:intergenic | 40.0% | |
| CCTAATACTAAGGACATGGT+TGG | + | 38017:9828-9847 | MS.gene059657:intron | 40.0% | |
| CCTTGTTGGACCTAAAATTC+AGG | + | 38017:10360-10379 | MS.gene059657:intron | 40.0% | |
| CGGTGATAGAAACTGGAATT+AGG | - | 38017:10169-10188 | MS.gene059657:intergenic | 40.0% | |
| CTCTTGTCATTCCAGGTTTA+CGG | - | 38017:9000-9019 | MS.gene059657:intergenic | 40.0% | |
| CTGATCATGCTTGAAGCAAA+AGG | - | 38017:9347-9366 | MS.gene059657:intergenic | 40.0% | |
| GAAATCGGTCGCACATAAAA+TGG | - | 38017:8620-8639 | MS.gene059657:intergenic | 40.0% | |
| GAAATTCCTCAACTCCGTTA+CGG | - | 38017:11797-11816 | MS.gene059657:intergenic | 40.0% | |
| GACAGATCGCATACAAAATG+GGG | + | 38017:10618-10637 | MS.gene059657:CDS | 40.0% | |
| GAGGCTAATTGAATGTGAGT+TGG | + | 38017:10894-10913 | MS.gene059657:intron | 40.0% | |
| GGAGGGAATAATGGTAAAAG+GGG | + | 38017:9878-9897 | MS.gene059657:intron | 40.0% | |
| GTTGAGGAATTTCTTCCTCT+TGG | + | 38017:11804-11823 | MS.gene059657:CDS | 40.0% | |
| TAACTCCACTGTTCCTATTG+CGG | + | 38017:9120-9139 | MS.gene059657:CDS | 40.0% | |
| TATGATCCCAAGAGACTGTT+GGG | + | 38017:9169-9188 | MS.gene059657:CDS | 40.0% | |
| TATTGGGGTGAATTCCATGT+GGG | + | 38017:8589-8608 | MS.gene059657:intron | 40.0% | |
| TCAATAGACATGGGTAAGGA+GGG | + | 38017:9861-9880 | MS.gene059657:intron | 40.0% | |
| TCTGTCTTGGTGGAATGTAT+CGG | + | 38017:11033-11052 | MS.gene059657:intron | 40.0% | |
| TCTTGTCATTCCAGGTTTAC+GGG | - | 38017:8999-9018 | MS.gene059657:intergenic | 40.0% | |
| TGCACTTACAGGTATGGATT+TGG | + | 38017:8952-8971 | MS.gene059657:CDS | 40.0% | |
| TGGATCTGCAACACTATCAA+TGG | + | 38017:11204-11223 | MS.gene059657:CDS | 40.0% | |
| TGTAATTCTGGCACTACTGA+TGG | - | 38017:8420-8439 | MS.gene059657:intergenic | 40.0% | |
| TTATGATCCCAAGAGACTGT+TGG | + | 38017:9168-9187 | MS.gene059657:CDS | 40.0% | |
| TTATTGGGGTGAATTCCATG+TGG | + | 38017:8588-8607 | MS.gene059657:intron | 40.0% | |
| ! | AATTTTCTCTAGGCCAAAGC+TGG | + | 38017:11178-11197 | MS.gene059657:intron | 40.0% |
| ! | AGAAACTGGGTTGGAAAGAA+TGG | + | 38017:10016-10035 | MS.gene059657:intron | 40.0% |
| ! | GAAACTGGGTTGGAAAGAAT+GGG | + | 38017:10017-10036 | MS.gene059657:intron | 40.0% |
| ! | GAATTTTGTAGAGGCTTGCA+TGG | + | 38017:10936-10955 | MS.gene059657:intron | 40.0% |
| ! | GATTTGGTAATCATTCCTGC+TGG | + | 38017:8968-8987 | MS.gene059657:CDS | 40.0% |
| ! | GTTTAGGTTCGAGGATTCTT+GGG | + | 38017:8911-8930 | MS.gene059657:intron | 40.0% |
| ! | TGTTTAGGTTCGAGGATTCT+TGG | + | 38017:8910-8929 | MS.gene059657:intron | 40.0% |
| ! | TTTAGGTTCGAGGATTCTTG+GGG | + | 38017:8912-8931 | MS.gene059657:intron | 40.0% |
| ! | TTTGGTAATCATTCCTGCTG+GGG | + | 38017:8970-8989 | MS.gene059657:CDS | 40.0% |
| !! | AATTTCCTTTGGGGTGAAAG+AGG | - | 38017:10590-10609 | MS.gene059657:intergenic | 40.0% |
| !! | CAAGTGAAAGCGTTATCCAA+TGG | - | 38017:9641-9660 | MS.gene059657:intergenic | 40.0% |
| !! | CCTGAATTTTAGGTCCAACA+AGG | - | 38017:10363-10382 | MS.gene059657:intergenic | 40.0% |
| !! | GCATATGTTGATTCACAGGT+AGG | + | 38017:11575-11594 | MS.gene059657:intron | 40.0% |
| !!! | GAAAAGTTTTGAGACTCGAG+AGG | + | 38017:10875-10894 | MS.gene059657:intron | 40.0% |
| !!! | GATTTTGGTGTTTAGGTTCG+AGG | + | 38017:8902-8921 | MS.gene059657:intron | 40.0% |
| AAACGTACCTTGAGATTGGG+AGG | - | 38017:7618-7637 | MS.gene059657:intergenic | 45.0% | |
| AAGGACATGGTTGGGAATAG+AGG | + | 38017:9837-9856 | MS.gene059657:intron | 45.0% | |
| AATGTTCATTGCCGTGCCAA+AGG | + | 38017:7761-7780 | MS.gene059657:CDS | 45.0% | |
| ACCTCTGCCACTCAAATTTC+AGG | + | 38017:10552-10571 | MS.gene059657:intron | 45.0% | |
| ACCTGAAATTTGAGTGGCAG+AGG | - | 38017:10556-10575 | MS.gene059657:intergenic | 45.0% | |
| AGCTTAGAACAATGCTGAGC+TGG | + | 38017:9915-9934 | MS.gene059657:intron | 45.0% | |
| ATGGTCGTATAACCACACGT+TGG | + | 38017:9546-9565 | MS.gene059657:intron | 45.0% | |
| ATGTGGATGTTCCTGTTGTC+GGG | + | 38017:10410-10429 | MS.gene059657:CDS | 45.0% | |
| ATGTTCATTGCCGTGCCAAA+GGG | + | 38017:7762-7781 | MS.gene059657:CDS | 45.0% | |
| ATTCTGGCACTACTGATGGA+AGG | - | 38017:8416-8435 | MS.gene059657:intergenic | 45.0% | |
| CAATCTTGATCACCAACGTG+TGG | - | 38017:9561-9580 | MS.gene059657:intergenic | 45.0% | |
| CATGGGTAAGGAGGGAATAA+TGG | + | 38017:9869-9888 | MS.gene059657:intron | 45.0% | |
| CTACACACAGAGAGTGGTAT+CGG | + | 38017:9670-9689 | MS.gene059657:intron | 45.0% | |
| CTTGTCATTCCAGGTTTACG+GGG | - | 38017:8998-9017 | MS.gene059657:intergenic | 45.0% | |
| GACAATGCTTGACGTGGTTA+GGG | + | 38017:9195-9214 | MS.gene059657:CDS | 45.0% | |
| GACCCCTAATACTAAGGACA+TGG | + | 38017:9824-9843 | MS.gene059657:intron | 45.0% | |
| GACGTAACGGTGATAGAAAC+TGG | - | 38017:10176-10195 | MS.gene059657:intergenic | 45.0% | |
| GATGTGGATGTTCCTGTTGT+CGG | + | 38017:10409-10428 | MS.gene059657:CDS | 45.0% | |
| GATTGCAAAGCGATGTCCTA+AGG | + | 38017:9069-9088 | MS.gene059657:CDS | 45.0% | |
| GGACTAACAAAGTCTGTCGT+AGG | + | 38017:11731-11750 | MS.gene059657:intron | 45.0% | |
| TAATCACTTAGGGGACCAAG+AGG | - | 38017:11822-11841 | MS.gene059657:intergenic | 45.0% | |
| TACACACAGAGAGTGGTATC+GGG | + | 38017:9671-9690 | MS.gene059657:intron | 45.0% | |
| TATCGGACACGACATAGACA+CGG | + | 38017:8123-8142 | MS.gene059657:intron | 45.0% | |
| TGACAATGCTTGACGTGGTT+AGG | + | 38017:9194-9213 | MS.gene059657:CDS | 45.0% | |
| TGAGGATGCACTTACAGGTA+TGG | + | 38017:8946-8965 | MS.gene059657:CDS | 45.0% | |
| TTCAGACCGCCATAGTTGAT+AGG | - | 38017:10755-10774 | MS.gene059657:intergenic | 45.0% | |
| TTGAAAACCTCAGCCGCAAT+AGG | - | 38017:9136-9155 | MS.gene059657:intergenic | 45.0% | |
| ! | AAAGTACGACTTGGCCGTAA+CGG | + | 38017:11780-11799 | MS.gene059657:CDS | 45.0% |
| ! | ATATGTGCCACTGTTGTGTC+TGG | + | 38017:8387-8406 | MS.gene059657:intron | 45.0% |
| ! | GCTGAGGTTTTCAAAAGAGC+TGG | + | 38017:9142-9161 | MS.gene059657:CDS | 45.0% |
| ! | GTGTCCCACACTTTGGAAAT+CGG | - | 38017:8635-8654 | MS.gene059657:intergenic | 45.0% |
| ! | TCCTCGGATTAGGAGTGTAA+CGG | - | 38017:8221-8240 | MS.gene059657:intergenic | 45.0% |
| ! | TGCACTCCTCCTTTGTTTGT+AGG | + | 38017:10853-10872 | MS.gene059657:intron | 45.0% |
| !! | CACACGTTGGTGATCAAGAT+TGG | + | 38017:9559-9578 | MS.gene059657:intron | 45.0% |
| AAGGACACCAGACACAACAG+TGG | - | 38017:8397-8416 | MS.gene059657:intergenic | 50.0% | |
| ACAGGAACATCCACATCCCT+TGG | - | 38017:10406-10425 | MS.gene059657:intergenic | 50.0% | |
| ACCTTCCTCTTTCACCCCAA+AGG | + | 38017:10582-10601 | MS.gene059657:CDS | 50.0% | |
| ACGTAATGACAGGAAGGGTG+AGG | + | 38017:9987-10006 | MS.gene059657:intron | 50.0% | |
| AGAACAATGCTGAGCTGGCA+AGG | + | 38017:9920-9939 | MS.gene059657:intron | 50.0% | |
| CAGCTTGAGGATGCACTTAC+AGG | + | 38017:8941-8960 | MS.gene059657:CDS | 50.0% | |
| CCTCAATCCTCCCAATCTCA+AGG | + | 38017:7608-7627 | MS.gene059657:CDS | 50.0% | |
| CCTTGAGATTGGGAGGATTG+AGG | - | 38017:7611-7630 | MS.gene059657:intergenic | 50.0% | |
| CTTGGGGCAAAATCAGCTTG+AGG | + | 38017:8928-8947 | MS.gene059657:CDS | 50.0% | |
| GCACAGATACTCCTCGGATT+AGG | - | 38017:8231-8250 | MS.gene059657:intergenic | 50.0% | |
| GCATGTCTTCGTGCGTTGAA+AGG | + | 38017:11530-11549 | MS.gene059657:CDS | 50.0% | |
| GGTTAGGGCCAATACGTTTG+TGG | + | 38017:9210-9229 | MS.gene059657:CDS | 50.0% | |
| GTATCGTGAGCTAAGCGTCA+TGG | + | 38017:9527-9546 | MS.gene059657:intron | 50.0% | |
| GTCACTCCCAACAGTCTCTT+GGG | - | 38017:9178-9197 | MS.gene059657:intergenic | 50.0% | |
| GTGCAGACCTGAGAAAGAAG+AGG | - | 38017:10460-10479 | MS.gene059657:intergenic | 50.0% | |
| TCCGTTACACTCCTAATCCG+AGG | + | 38017:8217-8236 | MS.gene059657:intron | 50.0% | |
| TGAGATTGGGAGGATTGAGG+TGG | - | 38017:7608-7627 | MS.gene059657:intergenic | 50.0% | |
| TGGGGGAACAGAAGTTGTTG+AGG | + | 38017:10636-10655 | MS.gene059657:CDS | 50.0% | |
| TGTCACTCCCAACAGTCTCT+TGG | - | 38017:9179-9198 | MS.gene059657:intergenic | 50.0% | |
| TGTGGATGTTCCTGTTGTCG+GGG | + | 38017:10411-10430 | MS.gene059657:CDS | 50.0% | |
| TGTTCATTGCCGTGCCAAAG+GGG | + | 38017:7763-7782 | MS.gene059657:CDS | 50.0% | |
| ! | CACTTGCTACACACAGAGAG+TGG | + | 38017:9664-9683 | MS.gene059657:intron | 50.0% |
| ! | CGTGCTTAGGTATGGTTCTG+TGG | + | 38017:9599-9618 | MS.gene059657:intron | 50.0% |
| ! | GCGACCGATTTCCAAAGTGT+GGG | + | 38017:8628-8647 | MS.gene059657:intron | 50.0% |
| ! | TGCGACCGATTTCCAAAGTG+TGG | + | 38017:8627-8646 | MS.gene059657:intron | 50.0% |
| ! | TTTGGGGTGAAAGAGGAAGG+TGG | - | 38017:10583-10602 | MS.gene059657:intergenic | 50.0% |
| !! | TCCTTTGGGGTGAAAGAGGA+AGG | - | 38017:10586-10605 | MS.gene059657:intergenic | 50.0% |
| AATGACAGGAAGGGTGAGGC+TGG | + | 38017:9991-10010 | MS.gene059657:intron | 55.0% | |
| AGCAGAGAGGCTGGAGTAGT+AGG | + | 38017:10824-10843 | MS.gene059657:intron | 55.0% | |
| AGCTGGCAAGGAGTTGTGGA+TGG | + | 38017:9932-9951 | MS.gene059657:intron | 55.0% | |
| ATGACAGGAAGGGTGAGGCT+GGG | + | 38017:9992-10011 | MS.gene059657:intron | 55.0% | |
| ATTGGGAGGATTGAGGTGGC+TGG | - | 38017:7604-7623 | MS.gene059657:intergenic | 55.0% | |
| CACTGTTCCTATTGCGGCTG+AGG | + | 38017:9126-9145 | MS.gene059657:CDS | 55.0% | |
| CTCAGCCGCAATAGGAACAG+TGG | - | 38017:9128-9147 | MS.gene059657:intergenic | 55.0% | |
| GAATCCTGGTGATCCCCCTT+TGG | - | 38017:7780-7799 | MS.gene059657:intergenic | 55.0% | |
| GGGAGTGACAATGCTTGACG+TGG | + | 38017:9189-9208 | MS.gene059657:CDS | 55.0% | |
| GGGTCTTGATCCAAGGGATG+TGG | + | 38017:10393-10412 | MS.gene059657:CDS | 55.0% | |
| GTGGATGTTCCTGTTGTCGG+GGG | + | 38017:10412-10431 | MS.gene059657:CDS | 55.0% | |
| GTTCATTGCCGTGCCAAAGG+GGG | + | 38017:7764-7783 | MS.gene059657:CDS | 55.0% | |
| TCAAGGCGTGTCCCACACTT+TGG | - | 38017:8642-8661 | MS.gene059657:intergenic | 55.0% | |
| TGCAGATCCAGCTCCAGCTT+TGG | - | 38017:11194-11213 | MS.gene059657:intergenic | 55.0% | |
| ! | ACTTGGCCGTAACGGAGTTG+AGG | + | 38017:11788-11807 | MS.gene059657:CDS | 55.0% |
| !! | GTTGCGATTTTGGGTGCTGC+TGG | + | 38017:7803-7822 | MS.gene059657:CDS | 55.0% |
| AGGCTGGGCAGAAACTGGGT+TGG | + | 38017:10007-10026 | MS.gene059657:intron | 60.0% | |
| CTCTAGGCCAAAGCTGGAGC+TGG | + | 38017:11184-11203 | MS.gene059657:intron | 60.0% | |
| CTGGTGATCCCCCTTTGGCA+CGG | - | 38017:7775-7794 | MS.gene059657:intergenic | 60.0% | |
| GCTGAGCTGGCAAGGAGTTG+TGG | + | 38017:9928-9947 | MS.gene059657:intron | 60.0% | |
| GGTGAGGCTGGGCAGAAACT+GGG | + | 38017:10003-10022 | MS.gene059657:intron | 60.0% | |
| GGTGGTGAGAGACAGCAGAG+AGG | + | 38017:10811-10830 | MS.gene059657:intron | 60.0% | |
| GTGAGAGACAGCAGAGAGGC+TGG | + | 38017:10815-10834 | MS.gene059657:intron | 60.0% | |
| !! | TTGGGTGCTGCTGGTGGCAT+AGG | + | 38017:7812-7831 | MS.gene059657:CDS | 60.0% |
| !!! | GCGATTTTGGGTGCTGCTGG+TGG | + | 38017:7806-7825 | MS.gene059657:CDS | 60.0% |
| CCTGTTGTCGGGGGACATGC+CGG | + | 38017:10421-10440 | MS.gene059657:CDS | 65.0% | |
| CGTGCCAAAGGGGGATCACC+AGG | + | 38017:7773-7792 | MS.gene059657:CDS | 65.0% | |
| GCTGGGGTTCCCCGTAAACC+TGG | + | 38017:8986-9005 | MS.gene059657:CDS | 65.0% | |
| GGGTGAGGCTGGGCAGAAAC+TGG | + | 38017:10002-10021 | MS.gene059657:intron | 65.0% | |
| GGTTTACGGGGAACCCCAGC+AGG | - | 38017:8986-9005 | MS.gene059657:intergenic | 65.0% | |
| CCGGCATGTCCCCCGACAAC+AGG | - | 38017:10424-10443 | MS.gene059657:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 38017 | gene | 7558 | 11847 | 7558 | ID=MS.gene059657 |
| 38017 | mRNA | 7558 | 11847 | 7558 | ID=MS.gene059657.t1;Parent=MS.gene059657 |
| 38017 | exon | 7558 | 7629 | 7558 | ID=MS.gene059657.t1.exon1;Parent=MS.gene059657.t1 |
| 38017 | CDS | 7558 | 7629 | 7558 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| 38017 | exon | 7731 | 7952 | 7731 | ID=MS.gene059657.t1.exon2;Parent=MS.gene059657.t1 |
| 38017 | CDS | 7731 | 7952 | 7731 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| 38017 | exon | 8917 | 9231 | 8917 | ID=MS.gene059657.t1.exon3;Parent=MS.gene059657.t1 |
| 38017 | CDS | 8917 | 9231 | 8917 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| 38017 | exon | 10382 | 10471 | 10382 | ID=MS.gene059657.t1.exon4;Parent=MS.gene059657.t1 |
| 38017 | CDS | 10382 | 10471 | 10382 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| 38017 | exon | 10574 | 10657 | 10574 | ID=MS.gene059657.t1.exon5;Parent=MS.gene059657.t1 |
| 38017 | CDS | 10574 | 10657 | 10574 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| 38017 | exon | 11190 | 11225 | 11190 | ID=MS.gene059657.t1.exon6;Parent=MS.gene059657.t1 |
| 38017 | CDS | 11190 | 11225 | 11190 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| 38017 | exon | 11503 | 11592 | 11503 | ID=MS.gene059657.t1.exon7;Parent=MS.gene059657.t1 |
| 38017 | CDS | 11503 | 11592 | 11503 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| 38017 | exon | 11753 | 11847 | 11753 | ID=MS.gene059657.t1.exon8;Parent=MS.gene059657.t1 |
| 38017 | CDS | 11753 | 11847 | 11753 | ID=cds.MS.gene059657.t1;Parent=MS.gene059657.t1 |
| Gene Sequence |
| Protein sequence |
