Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016160.t1 | AES59174.2 | 97.6 | 337 | 8 | 0 | 1 | 337 | 1 | 337 | 9.50E-193 | 682.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016160.t1 | Q9S7X6 | 69.0 | 339 | 100 | 2 | 1 | 336 | 1 | 337 | 9.8e-138 | 491.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016160.t1 | G7I904 | 97.6 | 337 | 8 | 0 | 1 | 337 | 1 | 337 | 6.9e-193 | 682.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06736 | MS.gene016160 | PPI |
| MS.gene06954 | MS.gene016160 | PPI |
| MS.gene009124 | MS.gene016160 | PPI |
| MS.gene038590 | MS.gene016160 | PPI |
| MS.gene80283 | MS.gene016160 | PPI |
| MS.gene013613 | MS.gene016160 | PPI |
| MS.gene038589 | MS.gene016160 | PPI |
| MS.gene027622 | MS.gene016160 | PPI |
| MS.gene65617 | MS.gene016160 | PPI |
| MS.gene45048 | MS.gene016160 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016160.t1 | MTR_1g015300 | 97.626 | 337 | 8 | 0 | 1 | 337 | 1 | 337 | 0.0 | 684 |
| MS.gene016160.t1 | MTR_3g104960 | 73.373 | 338 | 79 | 3 | 1 | 336 | 1 | 329 | 0.0 | 519 |
| MS.gene016160.t1 | MTR_5g006140 | 68.106 | 301 | 96 | 0 | 32 | 332 | 25 | 325 | 4.82e-156 | 440 |
| MS.gene016160.t1 | MTR_5g006140 | 71.915 | 235 | 66 | 0 | 32 | 266 | 25 | 259 | 2.20e-130 | 373 |
| MS.gene016160.t1 | MTR_5g034470 | 33.212 | 274 | 164 | 10 | 11 | 275 | 33 | 296 | 9.82e-39 | 140 |
| MS.gene016160.t1 | MTR_5g034470 | 33.212 | 274 | 164 | 10 | 11 | 275 | 33 | 296 | 1.42e-38 | 140 |
| MS.gene016160.t1 | MTR_8g063940 | 31.200 | 250 | 156 | 8 | 34 | 275 | 54 | 295 | 3.56e-35 | 131 |
| MS.gene016160.t1 | MTR_3g091090 | 28.723 | 282 | 190 | 8 | 46 | 322 | 83 | 358 | 6.91e-23 | 98.2 |
| MS.gene016160.t1 | MTR_1g028360 | 30.337 | 267 | 177 | 7 | 46 | 310 | 88 | 347 | 8.49e-22 | 95.1 |
| MS.gene016160.t1 | MTR_3g078190 | 33.103 | 145 | 96 | 1 | 47 | 190 | 59 | 203 | 1.43e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016160.t1 | AT5G19530 | 69.027 | 339 | 100 | 2 | 1 | 336 | 1 | 337 | 1.12e-176 | 493 |
| MS.gene016160.t1 | AT5G19530 | 70.462 | 325 | 94 | 1 | 12 | 336 | 8 | 330 | 6.76e-174 | 486 |
| MS.gene016160.t1 | AT1G23820 | 34.667 | 225 | 139 | 6 | 46 | 267 | 105 | 324 | 6.38e-40 | 143 |
| MS.gene016160.t1 | AT1G23820 | 34.419 | 215 | 134 | 5 | 46 | 258 | 61 | 270 | 3.35e-37 | 136 |
| MS.gene016160.t1 | AT1G70310 | 31.600 | 250 | 155 | 8 | 34 | 275 | 51 | 292 | 1.08e-35 | 132 |
| MS.gene016160.t1 | AT5G53120 | 31.128 | 257 | 162 | 6 | 46 | 300 | 84 | 327 | 2.02e-23 | 99.8 |
| MS.gene016160.t1 | AT5G53120 | 31.128 | 257 | 162 | 6 | 46 | 300 | 84 | 327 | 2.02e-23 | 99.8 |
| MS.gene016160.t1 | AT5G53120 | 31.128 | 257 | 162 | 6 | 46 | 300 | 84 | 327 | 2.02e-23 | 99.8 |
| MS.gene016160.t1 | AT5G53120 | 31.128 | 257 | 162 | 6 | 46 | 300 | 84 | 327 | 2.02e-23 | 99.8 |
| MS.gene016160.t1 | AT5G53120 | 31.128 | 257 | 162 | 6 | 46 | 300 | 84 | 327 | 2.02e-23 | 99.8 |
| MS.gene016160.t1 | AT5G53120 | 31.128 | 257 | 162 | 6 | 46 | 300 | 101 | 344 | 2.90e-23 | 99.4 |
| MS.gene016160.t1 | AT5G53120 | 28.169 | 284 | 162 | 8 | 46 | 300 | 84 | 354 | 8.94e-20 | 89.7 |
Find 76 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAACCTGTTGAGTTTAA+AGG | 0.204551 | 1.2:-6992915 | None:intergenic |
| TCATTAACGTAAAACATTTC+TGG | 0.211926 | 1.2:-6992791 | None:intergenic |
| AAAATACCTGGTTGCAAATA+AGG | 0.242099 | 1.2:+6995337 | MS.gene016160:CDS |
| ACATGGTTTGGTTGAACTTC+AGG | 0.282517 | 1.2:-6992830 | None:intergenic |
| AGAATTGAAGCAAGAATAAA+AGG | 0.285461 | 1.2:+6996562 | MS.gene016160:CDS |
| TCCACAGCATCAATCAATAT+TGG | 0.287518 | 1.2:-6996529 | None:intergenic |
| CCCCAAGACGGTGTTTATAA+TGG | 0.300655 | 1.2:+6994462 | MS.gene016160:CDS |
| CCCATTATAAACACCGTCTT+GGG | 0.300710 | 1.2:-6994463 | None:intergenic |
| CTCTTGGATACAAAGCGTTT+TGG | 0.309876 | 1.2:+6993206 | MS.gene016160:CDS |
| TGATATCATTGTTGGAGATT+TGG | 0.339425 | 1.2:+6995571 | MS.gene016160:CDS |
| CTTCACAACTTTCTCATAGA+AGG | 0.351490 | 1.2:-6995639 | None:intergenic |
| TACCATCATTTGCTGATTCA+TGG | 0.351693 | 1.2:+6996398 | MS.gene016160:CDS |
| ATGCCATTGTCAGTGAGTTT+AGG | 0.356612 | 1.2:-6995662 | None:intergenic |
| TGATTCATGGGGATGGGTTA+TGG | 0.358644 | 1.2:+6996411 | MS.gene016160:CDS |
| GAGAAGTTTGATATCATTGT+TGG | 0.364473 | 1.2:+6995563 | MS.gene016160:CDS |
| TTCTTATAGGCTGGACCAGC+AGG | 0.390978 | 1.2:+6995957 | MS.gene016160:intron |
| AATGGTCCTTTAAACTCAAC+AGG | 0.400428 | 1.2:+6992909 | MS.gene016160:CDS |
| ATACCAGGACATTGCTCTCT+TGG | 0.416640 | 1.2:+6993190 | MS.gene016160:CDS |
| TGCTCTATCTAGACGGTGCT+TGG | 0.419252 | 1.2:+6996590 | MS.gene016160:CDS |
| CCCAAGACGGTGTTTATAAT+GGG | 0.420987 | 1.2:+6994463 | MS.gene016160:CDS |
| ATTGATTGATGCTGTGGAAA+TGG | 0.421971 | 1.2:+6996534 | MS.gene016160:CDS |
| CATTTGCTGATTCATGGGGA+TGG | 0.430597 | 1.2:+6996404 | MS.gene016160:CDS |
| GATAATGCTAGATTTATTCC+TGG | 0.440598 | 1.2:+6996779 | MS.gene016160:CDS |
| CATGGTTTGGTTGAACTTCA+GGG | 0.443362 | 1.2:-6992829 | None:intergenic |
| TGATTCTTCCACATGGTATG+AGG | 0.443438 | 1.2:+6992865 | MS.gene016160:CDS |
| TATACACAACACCATAAAAC+AGG | 0.448583 | 1.2:+6996010 | MS.gene016160:CDS |
| TCAACGTTGTTGACATGGTT+TGG | 0.458692 | 1.2:-6992842 | None:intergenic |
| AATATTCCTGCAGGAGGTGG+TGG | 0.466008 | 1.2:+6995304 | MS.gene016160:intron |
| ATATAGGCGTTGATGCTTGA+TGG | 0.475521 | 1.2:+6993566 | MS.gene016160:intron |
| ACCATCATTTGCTGATTCAT+GGG | 0.486333 | 1.2:+6996399 | MS.gene016160:CDS |
| TGGTGAAGGTTCAGCAGCTA+GGG | 0.487536 | 1.2:+6994489 | MS.gene016160:CDS |
| TCCCATTATAAACACCGTCT+TGG | 0.488858 | 1.2:-6994464 | None:intergenic |
| CATTTCTGGTGCCTCTCCCA+TGG | 0.496543 | 1.2:-6992777 | None:intergenic |
| TTTATAATGGGAGGTGGTGA+AGG | 0.498635 | 1.2:+6994475 | MS.gene016160:CDS |
| TATTCATGATGGTAGATGAA+TGG | 0.501719 | 1.2:-6996615 | None:intergenic |
| CCCATTTGGTGCAGATGTGG+TGG | 0.502068 | 1.2:+6996360 | MS.gene016160:intron |
| GGCTGAATTAGAGAAAAGAA+AGG | 0.510493 | 1.2:+6995541 | MS.gene016160:CDS |
| GCTAGATTTATTCCTGGTCA+TGG | 0.513206 | 1.2:+6996785 | MS.gene016160:CDS |
| ATTTGCTGATTCATGGGGAT+GGG | 0.513753 | 1.2:+6996405 | MS.gene016160:CDS |
| TTGGCTGACCCACTTGAAGA+TGG | 0.518779 | 1.2:+6995590 | MS.gene016160:CDS |
| AGCTCTCAAGCACAAGTCAA+TGG | 0.518812 | 1.2:+6994513 | MS.gene016160:CDS |
| TCATTGATGATGATCTCAAA+TGG | 0.521281 | 1.2:+6992891 | MS.gene016160:CDS |
| GCATAGCATGTCGTCCCTAA+AGG | 0.523854 | 1.2:+6996807 | MS.gene016160:CDS |
| GTGGTGAAGGTTCAGCAGCT+AGG | 0.528642 | 1.2:+6994488 | MS.gene016160:CDS |
| AATCATCAACGTTGTTGACA+TGG | 0.529958 | 1.2:-6992847 | None:intergenic |
| ACCAATATTGATTGATGCTG+TGG | 0.532194 | 1.2:+6996528 | MS.gene016160:CDS |
| CCCCATGAATCAGCAAATGA+TGG | 0.540394 | 1.2:-6996400 | None:intergenic |
| AACAAATAAAACCATGGGAG+AGG | 0.560741 | 1.2:+6992766 | None:intergenic |
| CGACATGCTATGCCATGACC+AGG | 0.567260 | 1.2:-6996797 | None:intergenic |
| AACTTTCTCATAGAAGGACT+TGG | 0.568835 | 1.2:-6995633 | None:intergenic |
| TATCCAAGAGAGCAATGTCC+TGG | 0.569197 | 1.2:-6993193 | None:intergenic |
| TTACGTTAATGAGTTTGCAA+AGG | 0.578372 | 1.2:+6992802 | MS.gene016160:CDS |
| TTGTGTGAAAAGATACCTGC+TGG | 0.579877 | 1.2:-6995972 | None:intergenic |
| GAACACGGTCTTATTCATGA+TGG | 0.581081 | 1.2:-6996626 | None:intergenic |
| ATGCCTCCTTATTTGCAACC+AGG | 0.583465 | 1.2:-6995343 | None:intergenic |
| CAGCATCAATCAATATTGGT+TGG | 0.586960 | 1.2:-6996525 | None:intergenic |
| TTTGGATGACATAAAAGAGA+GGG | 0.601046 | 1.2:-6993644 | None:intergenic |
| GGATTTCTGCAGAAAATACC+TGG | 0.607431 | 1.2:+6995325 | MS.gene016160:CDS |
| GGAAAATTGCTCTATCTAGA+CGG | 0.609264 | 1.2:+6996583 | MS.gene016160:CDS |
| AAGCCTAAACTCACTGACAA+TGG | 0.615534 | 1.2:+6995659 | MS.gene016160:CDS |
| CCATTATAAACACCGTCTTG+GGG | 0.615981 | 1.2:-6994462 | None:intergenic |
| TAAAGCGATTAGTGAATACC+AGG | 0.616434 | 1.2:+6993175 | MS.gene016160:CDS |
| ACGGTGTTTATAATGGGAGG+TGG | 0.620093 | 1.2:+6994469 | MS.gene016160:CDS |
| TTGGTGTAGAGCTGATAGCA+AGG | 0.624084 | 1.2:-6995614 | None:intergenic |
| ACTTTGCACAGTTGATGACA+AGG | 0.637400 | 1.2:-6995385 | None:intergenic |
| TAGCAAGGACCATCTTCAAG+TGG | 0.638054 | 1.2:-6995599 | None:intergenic |
| AGCAAGGACCATCTTCAAGT+GGG | 0.640286 | 1.2:-6995598 | None:intergenic |
| CTTTGGATGACATAAAAGAG+AGG | 0.645177 | 1.2:-6993645 | None:intergenic |
| GTACACTTACGATTTGAACA+CGG | 0.645888 | 1.2:-6996641 | None:intergenic |
| CCATCATTTGCTGATTCATG+GGG | 0.648783 | 1.2:+6996400 | MS.gene016160:CDS |
| ATACCTGGTTGCAAATAAGG+AGG | 0.651779 | 1.2:+6995340 | MS.gene016160:CDS |
| AGTTATGTGCGATATTGACA+AGG | 0.654516 | 1.2:+6994543 | MS.gene016160:CDS |
| ATATATTGGCAGCCCCAAGA+CGG | 0.656927 | 1.2:+6994450 | MS.gene016160:intron |
| AAGACGGTGTTTATAATGGG+AGG | 0.658751 | 1.2:+6994466 | MS.gene016160:CDS |
| AATGATTTCCTCATACCATG+TGG | 0.685776 | 1.2:-6992873 | None:intergenic |
| ACGTTGATGATTCTTCCACA+TGG | 0.698888 | 1.2:+6992858 | MS.gene016160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACTAGTAAT+TGG | + | chr1.2:6994141-6994160 | MS.gene016160:intron | 10.0% |
| !! | ATAAAATTATATACTGATAA+TGG | + | chr1.2:6995012-6995031 | MS.gene016160:intron | 10.0% |
| !! | TTATAATACTATAAACAAAA+TGG | - | chr1.2:6993896-6993915 | None:intergenic | 10.0% |
| !!! | AATATGAATTTTTTTCTTTT+TGG | + | chr1.2:6993735-6993754 | MS.gene016160:intron | 10.0% |
| !!! | CAAGTTTTTATTTTTTTTTT+AGG | + | chr1.2:6995036-6995055 | MS.gene016160:intron | 10.0% |
| !!! | TTTTTTCATTTTAATATACA+TGG | - | chr1.2:6993781-6993800 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAAACAATAGTAA+TGG | + | chr1.2:6995073-6995092 | MS.gene016160:intron | 10.0% |
| !! | AACAAAATTTAGTATATGTT+TGG | + | chr1.2:6993292-6993311 | MS.gene016160:intron | 15.0% |
| !! | ATTATAAAACAAACTTACTT+TGG | - | chr1.2:6993665-6993684 | None:intergenic | 15.0% |
| !!! | AACAAAAATATTTTGCTAAA+AGG | + | chr1.2:6995154-6995173 | MS.gene016160:intron | 15.0% |
| !!! | AAGTCATATTCTTATTTTTT+TGG | + | chr1.2:6994576-6994595 | MS.gene016160:intron | 15.0% |
| !!! | AAGTTTGTTTTATAATATCA+GGG | + | chr1.2:6993669-6993688 | MS.gene016160:intron | 15.0% |
| !!! | AATGTTAAATATTGATTAGA+TGG | - | chr1.2:6995914-6995933 | None:intergenic | 15.0% |
| !!! | AGTCATATTCTTATTTTTTT+GGG | + | chr1.2:6994577-6994596 | MS.gene016160:intron | 15.0% |
| !!! | ATGTTAAATATTGATTAGAT+GGG | - | chr1.2:6995913-6995932 | None:intergenic | 15.0% |
| !!! | ATTATTAAGTTTTCAATTTG+AGG | - | chr1.2:6994688-6994707 | None:intergenic | 15.0% |
| !!! | TAAGTTTGTTTTATAATATC+AGG | + | chr1.2:6993668-6993687 | MS.gene016160:intron | 15.0% |
| !!! | TTATTAAGTTTTCAATTTGA+GGG | - | chr1.2:6994687-6994706 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTTTTTTAGGGA+AGG | + | chr1.2:6995041-6995060 | MS.gene016160:intron | 15.0% |
| !! | AAGTCTAATTATGTTCAATT+GGG | - | chr1.2:6996169-6996188 | None:intergenic | 20.0% |
| !! | AATAAAAAAAATATTCCTGC+AGG | + | chr1.2:6995295-6995314 | MS.gene016160:intron | 20.0% |
| !! | AATAAATCTAGCATTATCTT+AGG | - | chr1.2:6996777-6996796 | None:intergenic | 20.0% |
| !! | AATAAGAGAATATTACATCA+AGG | - | chr1.2:6993873-6993892 | None:intergenic | 20.0% |
| !! | AATAATATCCATATTGATGT+GGG | + | chr1.2:6994705-6994724 | MS.gene016160:intron | 20.0% |
| !! | ACAAATAAATTGAGACAAAA+TGG | - | chr1.2:6994869-6994888 | None:intergenic | 20.0% |
| !! | AGAAAACTTAAGTCATTTAA+GGG | - | chr1.2:6994976-6994995 | None:intergenic | 20.0% |
| !! | ATCCAAATTATTATTGTTTC+AGG | + | chr1.2:6996726-6996745 | MS.gene016160:intron | 20.0% |
| !! | CTATAAGAAAACATACAAAA+AGG | - | chr1.2:6995946-6995965 | None:intergenic | 20.0% |
| !! | GATATAAACATTGTATACAT+AGG | - | chr1.2:6994058-6994077 | None:intergenic | 20.0% |
| !! | TAAAACAGAGGAAATTAAAA+AGG | - | chr1.2:6992947-6992966 | None:intergenic | 20.0% |
| !! | TAATAATATCCATATTGATG+TGG | + | chr1.2:6994704-6994723 | MS.gene016160:intron | 20.0% |
| !! | TACTATATCATATAAAACAG+AGG | - | chr1.2:6992959-6992978 | None:intergenic | 20.0% |
| !! | TAGAAAACTTAAGTCATTTA+AGG | - | chr1.2:6994977-6994996 | None:intergenic | 20.0% |
| !! | TTGTAAAAGGATAAAAACAT+AGG | - | chr1.2:6994340-6994359 | None:intergenic | 20.0% |
| !! | TTTACAAAGGAAAAAACTTA+TGG | + | chr1.2:6994169-6994188 | MS.gene016160:intron | 20.0% |
| !!! | AAATTCTTTAAAAATGGACA+CGG | - | chr1.2:6996703-6996722 | None:intergenic | 20.0% |
| !!! | AAGTCTATAAAAAAGCATAA+TGG | - | chr1.2:6994375-6994394 | None:intergenic | 20.0% |
| !!! | AATCACATACTTTTTTTTAG+AGG | - | chr1.2:6993524-6993543 | None:intergenic | 20.0% |
| !!! | AGTTTGTTTTATAATATCAG+GGG | + | chr1.2:6993670-6993689 | MS.gene016160:intron | 20.0% |
| !!! | CTTTTTGTATGTTTTCTTAT+AGG | + | chr1.2:6995944-6995963 | MS.gene016160:intron | 20.0% |
| !!! | GATGTCAAATTCTTTAAAAA+TGG | - | chr1.2:6996709-6996728 | None:intergenic | 20.0% |
| !!! | GTAATTGGATATTTTTACAA+AGG | + | chr1.2:6994156-6994175 | MS.gene016160:intron | 20.0% |
| !!! | GTCATATTCTTATTTTTTTG+GGG | + | chr1.2:6994578-6994597 | MS.gene016160:intron | 20.0% |
| !!! | TCATATTCTTATTTTTTTGG+GGG | + | chr1.2:6994579-6994598 | MS.gene016160:intron | 20.0% |
| !!! | TCCTTATTTTTCTTAAACAA+GGG | - | chr1.2:6994737-6994756 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTAAAATGACGA+TGG | - | chr1.2:6994125-6994144 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTGTGTGTG+TGG | + | chr1.2:6995466-6995485 | MS.gene016160:intron | 20.0% |
| ! | AATTCAGTACATGAAATTGT+GGG | + | chr1.2:6996263-6996282 | MS.gene016160:intron | 25.0% |
| ! | AGAATTGAAGCAAGAATAAA+AGG | + | chr1.2:6996562-6996581 | MS.gene016160:CDS | 25.0% |
| ! | AGCCTGAAACAATAATAATT+TGG | - | chr1.2:6996731-6996750 | None:intergenic | 25.0% |
| ! | GAAGTCTAATTATGTTCAAT+TGG | - | chr1.2:6996170-6996189 | None:intergenic | 25.0% |
| ! | TAAAAGGATAAAAACATAGG+TGG | - | chr1.2:6994337-6994356 | None:intergenic | 25.0% |
| ! | TAAACCATACCACTTTATAT+TGG | + | chr1.2:6994031-6994050 | MS.gene016160:intron | 25.0% |
| ! | TCATTAACGTAAAACATTTC+TGG | - | chr1.2:6992794-6992813 | None:intergenic | 25.0% |
| ! | TCGTAATTTCGATAAATCTA+CGG | - | chr1.2:6993323-6993342 | None:intergenic | 25.0% |
| ! | TGTACAAACCTCAAATTTAA+AGG | + | chr1.2:6996659-6996678 | MS.gene016160:intron | 25.0% |
| !! | AATTTCTATGCTTTGAATTC+AGG | + | chr1.2:6996495-6996514 | MS.gene016160:intron | 25.0% |
| !! | CTTCACAATTTTGTGTTAAA+GGG | + | chr1.2:6995520-6995539 | MS.gene016160:intron | 25.0% |
| !!! | AAACATAGGTGGATTTTTTT+AGG | - | chr1.2:6994326-6994345 | None:intergenic | 25.0% |
| !!! | CCTTATTTTTCTTAAACAAG+GGG | - | chr1.2:6994736-6994755 | None:intergenic | 25.0% |
| !!! | GCTTTTTTATAGACTTGATT+GGG | + | chr1.2:6994379-6994398 | MS.gene016160:intron | 25.0% |
| !!! | GTCCTTATTTTTCTTAAACA+AGG | - | chr1.2:6994738-6994757 | None:intergenic | 25.0% |
| !!! | GTGTGCTATTAATTTGTAAA+AGG | - | chr1.2:6994353-6994372 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTATAGACTTGAT+TGG | + | chr1.2:6994378-6994397 | MS.gene016160:intron | 25.0% |
| !!! | TGTTGCTATCAATATTTTTG+CGG | - | chr1.2:6993972-6993991 | None:intergenic | 25.0% |
| !!! | TTGTTATTTATGCTGCATAT+AGG | + | chr1.2:6993550-6993569 | MS.gene016160:intron | 25.0% |
| AAAAAAAATATTCCTGCAGG+AGG | + | chr1.2:6995298-6995317 | MS.gene016160:intron | 30.0% | |
| AAAATACCTGGTTGCAAATA+AGG | + | chr1.2:6995337-6995356 | MS.gene016160:CDS | 30.0% | |
| AAAGCGTGGTAACAAAAATA+TGG | - | chr1.2:6995882-6995901 | None:intergenic | 30.0% | |
| ACACTTGTTCAAACAAAACA+TGG | + | chr1.2:6996228-6996247 | MS.gene016160:intron | 30.0% | |
| ACCTACTAGTAAAAGATTTG+AGG | - | chr1.2:6996060-6996079 | None:intergenic | 30.0% | |
| ATCAGAAGTTGTGATACAAT+CGG | - | chr1.2:6995765-6995784 | None:intergenic | 30.0% | |
| CAATTCAGTACATGAAATTG+TGG | + | chr1.2:6996262-6996281 | MS.gene016160:intron | 30.0% | |
| GAGAAGTTTGATATCATTGT+TGG | + | chr1.2:6995563-6995582 | MS.gene016160:CDS | 30.0% | |
| GATAATGCTAGATTTATTCC+TGG | + | chr1.2:6996779-6996798 | MS.gene016160:CDS | 30.0% | |
| GATTATGTTTGATGAAACCT+TGG | + | chr1.2:6994401-6994420 | MS.gene016160:intron | 30.0% | |
| TACATAGGTCCAATATAAAG+TGG | - | chr1.2:6994043-6994062 | None:intergenic | 30.0% | |
| TATACACAACACCATAAAAC+AGG | + | chr1.2:6996010-6996029 | MS.gene016160:CDS | 30.0% | |
| TATTCATGATGGTAGATGAA+TGG | - | chr1.2:6996618-6996637 | None:intergenic | 30.0% | |
| TGATATCATTGTTGGAGATT+TGG | + | chr1.2:6995571-6995590 | MS.gene016160:CDS | 30.0% | |
| TGGTAAGAATTTGTAAGACA+TGG | + | chr1.2:6995206-6995225 | MS.gene016160:intron | 30.0% | |
| TTAAGTCATTTAAGGGATAC+TGG | - | chr1.2:6994969-6994988 | None:intergenic | 30.0% | |
| TTACGTTAATGAGTTTGCAA+AGG | + | chr1.2:6992802-6992821 | MS.gene016160:CDS | 30.0% | |
| TTTGGATGACATAAAAGAGA+GGG | - | chr1.2:6993647-6993666 | None:intergenic | 30.0% | |
| ! | ACATTTGAAGACCTGTTTTA+TGG | - | chr1.2:6996024-6996043 | None:intergenic | 30.0% |
| ! | ACCTCAAATCTTTTACTAGT+AGG | + | chr1.2:6996056-6996075 | MS.gene016160:intron | 30.0% |
| ! | ACTCTTTTATACTCTCTTGT+TGG | - | chr1.2:6994080-6994099 | None:intergenic | 30.0% |
| ! | CCCCTTGTTTAAGAAAAATA+AGG | + | chr1.2:6994733-6994752 | MS.gene016160:intron | 30.0% |
| ! | GCTTCACAATTTTGTGTTAA+AGG | + | chr1.2:6995519-6995538 | MS.gene016160:intron | 30.0% |
| ! | TAAGTTTTCAATTTGAGGGA+CGG | - | chr1.2:6994683-6994702 | None:intergenic | 30.0% |
| ! | TTGTATGTTTTCTTATAGGC+TGG | + | chr1.2:6995948-6995967 | MS.gene016160:intron | 30.0% |
| !! | TAGTAGGTGTTTGTTATAAC+CGG | + | chr1.2:6996072-6996091 | MS.gene016160:intron | 30.0% |
| !! | TCATTGATGATGATCTCAAA+TGG | + | chr1.2:6992891-6992910 | MS.gene016160:CDS | 30.0% |
| !! | TTGTTTTATAATATCAGGGG+AGG | + | chr1.2:6993673-6993692 | MS.gene016160:intron | 30.0% |
| !!! | TTTTATGGTGTTGTGTATAG+AGG | - | chr1.2:6996009-6996028 | None:intergenic | 30.0% |
| AACCTTGGACTAATATGAAG+AGG | + | chr1.2:6994416-6994435 | MS.gene016160:intron | 35.0% | |
| AACGAACCTGTTGAGTTTAA+AGG | - | chr1.2:6992918-6992937 | None:intergenic | 35.0% | |
| AACTTTCTCATAGAAGGACT+TGG | - | chr1.2:6995636-6995655 | None:intergenic | 35.0% | |
| AATCATCAACGTTGTTGACA+TGG | - | chr1.2:6992850-6992869 | None:intergenic | 35.0% | |
| AATGATTTCCTCATACCATG+TGG | - | chr1.2:6992876-6992895 | None:intergenic | 35.0% | |
| AATGGTCCTTTAAACTCAAC+AGG | + | chr1.2:6992909-6992928 | MS.gene016160:CDS | 35.0% | |
| ACACGGTTAAATTACACTAG+AGG | - | chr1.2:6996686-6996705 | None:intergenic | 35.0% | |
| AGCCAATAACAAATTCAACC+CGG | - | chr1.2:6996104-6996123 | None:intergenic | 35.0% | |
| AGGCATGTGTGGTAATATAT+TGG | + | chr1.2:6994436-6994455 | MS.gene016160:intron | 35.0% | |
| AGGTCCAATATAAAGTGGTA+TGG | - | chr1.2:6994038-6994057 | None:intergenic | 35.0% | |
| AGTTATGTGCGATATTGACA+AGG | + | chr1.2:6994543-6994562 | MS.gene016160:CDS | 35.0% | |
| ATGGAACAGAGAGAGAATAT+TGG | + | chr1.2:6995186-6995205 | MS.gene016160:intron | 35.0% | |
| ATGTCAGACAGTTGTTCAAT+AGG | + | chr1.2:6995723-6995742 | MS.gene016160:intron | 35.0% | |
| ATTGATTGATGCTGTGGAAA+TGG | + | chr1.2:6996534-6996553 | MS.gene016160:CDS | 35.0% | |
| CAGCATCAATCAATATTGGT+TGG | - | chr1.2:6996528-6996547 | None:intergenic | 35.0% | |
| CTAGAGGTCCTTTAAATTTG+AGG | - | chr1.2:6996670-6996689 | None:intergenic | 35.0% | |
| CTGAAAAAAGAATACCAGTC+AGG | - | chr1.2:6995825-6995844 | None:intergenic | 35.0% | |
| CTTCACAACTTTCTCATAGA+AGG | - | chr1.2:6995642-6995661 | None:intergenic | 35.0% | |
| CTTTGGATGACATAAAAGAG+AGG | - | chr1.2:6993648-6993667 | None:intergenic | 35.0% | |
| GGAAAATTGCTCTATCTAGA+CGG | + | chr1.2:6996583-6996602 | MS.gene016160:CDS | 35.0% | |
| GGCTGAATTAGAGAAAAGAA+AGG | + | chr1.2:6995541-6995560 | MS.gene016160:CDS | 35.0% | |
| GTACACTTACGATTTGAACA+CGG | - | chr1.2:6996644-6996663 | None:intergenic | 35.0% | |
| TAAAGCGATTAGTGAATACC+AGG | + | chr1.2:6993175-6993194 | MS.gene016160:CDS | 35.0% | |
| TACAATCGGAAGCGAAATTT+AGG | - | chr1.2:6995751-6995770 | None:intergenic | 35.0% | |
| TCCACAGCATCAATCAATAT+TGG | - | chr1.2:6996532-6996551 | None:intergenic | 35.0% | |
| TGCTAAAAGGACAGACAAAA+TGG | + | chr1.2:6995167-6995186 | MS.gene016160:intron | 35.0% | |
| ! | ACCAATATTGATTGATGCTG+TGG | + | chr1.2:6996528-6996547 | MS.gene016160:CDS | 35.0% |
| ! | AGCTAGCTCATTTTGCAAAT+AGG | + | chr1.2:6995412-6995431 | MS.gene016160:intron | 35.0% |
| ! | AGGTATCTTTTCACACAAAG+AGG | + | chr1.2:6995977-6995996 | MS.gene016160:CDS | 35.0% |
| ! | ATGTTTTGCTTACGTGCTTT+TGG | + | chr1.2:6996315-6996334 | MS.gene016160:intron | 35.0% |
| ! | TTTTGTGTGTGTGGATTTCA+TGG | + | chr1.2:6995475-6995494 | MS.gene016160:intron | 35.0% |
| !! | AACCGGGTTGAATTTGTTAT+TGG | + | chr1.2:6996099-6996118 | MS.gene016160:intron | 35.0% |
| !! | ACCATCATTTGCTGATTCAT+GGG | + | chr1.2:6996399-6996418 | MS.gene016160:CDS | 35.0% |
| !! | TACCATCATTTGCTGATTCA+TGG | + | chr1.2:6996398-6996417 | MS.gene016160:CDS | 35.0% |
| AAAAATATTCCTGCAGGAGG+TGG | + | chr1.2:6995301-6995320 | MS.gene016160:intron | 40.0% | |
| AAGCCTAAACTCACTGACAA+TGG | + | chr1.2:6995659-6995678 | MS.gene016160:CDS | 40.0% | |
| AGAGTCTGACAAAGTAAGTG+TGG | + | chr1.2:6994095-6994114 | MS.gene016160:intron | 40.0% | |
| ATACCTGGTTGCAAATAAGG+AGG | + | chr1.2:6995340-6995359 | MS.gene016160:CDS | 40.0% | |
| ATGCCATTGTCAGTGAGTTT+AGG | - | chr1.2:6995665-6995684 | None:intergenic | 40.0% | |
| CCATTATAAACACCGTCTTG+GGG | - | chr1.2:6994465-6994484 | None:intergenic | 40.0% | |
| CCCAAGACGGTGTTTATAAT+GGG | + | chr1.2:6994463-6994482 | MS.gene016160:CDS | 40.0% | |
| CCCATTATAAACACCGTCTT+GGG | - | chr1.2:6994466-6994485 | None:intergenic | 40.0% | |
| GCTAGATTTATTCCTGGTCA+TGG | + | chr1.2:6996785-6996804 | MS.gene016160:CDS | 40.0% | |
| GGATTTCTGCAGAAAATACC+TGG | + | chr1.2:6995325-6995344 | MS.gene016160:CDS | 40.0% | |
| GTCAGGAGTTACAACTCAAT+CGG | - | chr1.2:6995808-6995827 | None:intergenic | 40.0% | |
| TCAACGTTGTTGACATGGTT+TGG | - | chr1.2:6992845-6992864 | None:intergenic | 40.0% | |
| TCCCATTATAAACACCGTCT+TGG | - | chr1.2:6994467-6994486 | None:intergenic | 40.0% | |
| TGATTCTTCCACATGGTATG+AGG | + | chr1.2:6992865-6992884 | MS.gene016160:CDS | 40.0% | |
| TGCCTCTTCATATTAGTCCA+AGG | - | chr1.2:6994421-6994440 | None:intergenic | 40.0% | |
| TGTTCCTCAAAAGTCTACCT+GGG | - | chr1.2:6995696-6995715 | None:intergenic | 40.0% | |
| TTCGTTCCTTCTTTCCCATT+TGG | + | chr1.2:6996346-6996365 | MS.gene016160:intron | 40.0% | |
| TTGTGTGAAAAGATACCTGC+TGG | - | chr1.2:6995975-6995994 | None:intergenic | 40.0% | |
| TTGTTATAACCGGATCGAAC+CGG | + | chr1.2:6996082-6996101 | MS.gene016160:intron | 40.0% | |
| ! | AAGACGGTGTTTATAATGGG+AGG | + | chr1.2:6994466-6994485 | MS.gene016160:CDS | 40.0% |
| ! | ATTGAGTTGTAACTCCTGAC+TGG | + | chr1.2:6995808-6995827 | MS.gene016160:intron | 40.0% |
| ! | CTAATATGAAGAGGCATGTG+TGG | + | chr1.2:6994425-6994444 | MS.gene016160:intron | 40.0% |
| ! | TTTATAATGGGAGGTGGTGA+AGG | + | chr1.2:6994475-6994494 | MS.gene016160:CDS | 40.0% |
| !! | ACATGGTTTGGTTGAACTTC+AGG | - | chr1.2:6992833-6992852 | None:intergenic | 40.0% |
| !! | ACGTTGATGATTCTTCCACA+TGG | + | chr1.2:6992858-6992877 | MS.gene016160:CDS | 40.0% |
| !! | ACTTTGCACAGTTGATGACA+AGG | - | chr1.2:6995388-6995407 | None:intergenic | 40.0% |
| !! | ATATAGGCGTTGATGCTTGA+TGG | + | chr1.2:6993566-6993585 | MS.gene016160:intron | 40.0% |
| !! | ATTTGCTGATTCATGGGGAT+GGG | + | chr1.2:6996405-6996424 | MS.gene016160:CDS | 40.0% |
| !! | CATGGTTTGGTTGAACTTCA+GGG | - | chr1.2:6992832-6992851 | None:intergenic | 40.0% |
| !! | CCATCATTTGCTGATTCATG+GGG | + | chr1.2:6996400-6996419 | MS.gene016160:CDS | 40.0% |
| !! | CTCTTGGATACAAAGCGTTT+TGG | + | chr1.2:6993206-6993225 | MS.gene016160:CDS | 40.0% |
| !! | GAACACGGTCTTATTCATGA+TGG | - | chr1.2:6996629-6996648 | None:intergenic | 40.0% |
| !!! | ATTTTGATTCGCAACGAGTG+TGG | - | chr1.2:6993361-6993380 | None:intergenic | 40.0% |
| !!! | GGATACAAAGCGTTTTGGAA+AGG | + | chr1.2:6993211-6993230 | MS.gene016160:CDS | 40.0% |
| AGCAAGGACCATCTTCAAGT+GGG | - | chr1.2:6995601-6995620 | None:intergenic | 45.0% | |
| AGCTCTCAAGCACAAGTCAA+TGG | + | chr1.2:6994513-6994532 | MS.gene016160:CDS | 45.0% | |
| ATACCAGGACATTGCTCTCT+TGG | + | chr1.2:6993190-6993209 | MS.gene016160:CDS | 45.0% | |
| ATATATTGGCAGCCCCAAGA+CGG | + | chr1.2:6994450-6994469 | MS.gene016160:intron | 45.0% | |
| CCCCAAGACGGTGTTTATAA+TGG | + | chr1.2:6994462-6994481 | MS.gene016160:CDS | 45.0% | |
| CCCCATGAATCAGCAAATGA+TGG | - | chr1.2:6996403-6996422 | None:intergenic | 45.0% | |
| GTGTTCCTCAAAAGTCTACC+TGG | - | chr1.2:6995697-6995716 | None:intergenic | 45.0% | |
| TAGCAAGGACCATCTTCAAG+TGG | - | chr1.2:6995602-6995621 | None:intergenic | 45.0% | |
| TATCCAAGAGAGCAATGTCC+TGG | - | chr1.2:6993196-6993215 | None:intergenic | 45.0% | |
| TCTGCACCAAATGGGAAAGA+AGG | - | chr1.2:6996355-6996374 | None:intergenic | 45.0% | |
| TGTTATAACCGGATCGAACC+GGG | + | chr1.2:6996083-6996102 | MS.gene016160:intron | 45.0% | |
| TTGGTGTAGAGCTGATAGCA+AGG | - | chr1.2:6995617-6995636 | None:intergenic | 45.0% | |
| ! | AAATTCAACCCGGTTCGATC+CGG | - | chr1.2:6996094-6996113 | None:intergenic | 45.0% |
| ! | ACGGTGTTTATAATGGGAGG+TGG | + | chr1.2:6994469-6994488 | MS.gene016160:CDS | 45.0% |
| ! | ATGCCTCCTTATTTGCAACC+AGG | - | chr1.2:6995346-6995365 | None:intergenic | 45.0% |
| ! | CAATGGCATTTTTGTGACCC+AGG | + | chr1.2:6995676-6995695 | MS.gene016160:CDS | 45.0% |
| !! | CATTTGCTGATTCATGGGGA+TGG | + | chr1.2:6996404-6996423 | MS.gene016160:CDS | 45.0% |
| !! | TGATTCATGGGGATGGGTTA+TGG | + | chr1.2:6996411-6996430 | MS.gene016160:CDS | 45.0% |
| !! | TTTCCCATTTGGTGCAGATG+TGG | + | chr1.2:6996357-6996376 | MS.gene016160:intron | 45.0% |
| !!! | AAGTTTTTATTTTTTTTTTA+GGG | + | chr1.2:6995037-6995056 | MS.gene016160:intron | 5.0% |
| AATATTCCTGCAGGAGGTGG+TGG | + | chr1.2:6995304-6995323 | MS.gene016160:intron | 50.0% | |
| CCACCACATCTGCACCAAAT+GGG | - | chr1.2:6996363-6996382 | None:intergenic | 50.0% | |
| GATGGGTAGTGAGAAAAGCG+TGG | - | chr1.2:6995896-6995915 | None:intergenic | 50.0% | |
| TGCTCTATCTAGACGGTGCT+TGG | + | chr1.2:6996590-6996609 | MS.gene016160:CDS | 50.0% | |
| TGGTGAAGGTTCAGCAGCTA+GGG | + | chr1.2:6994489-6994508 | MS.gene016160:CDS | 50.0% | |
| TTCTTATAGGCTGGACCAGC+AGG | + | chr1.2:6995957-6995976 | MS.gene016160:intron | 50.0% | |
| TTGGCTGACCCACTTGAAGA+TGG | + | chr1.2:6995590-6995609 | MS.gene016160:CDS | 50.0% | |
| ! | GTGACCCAGGTAGACTTTTG+AGG | + | chr1.2:6995689-6995708 | MS.gene016160:intron | 50.0% |
| AGAAATCCACCACCTCCTGC+AGG | - | chr1.2:6995313-6995332 | None:intergenic | 55.0% | |
| CAACGAGTGTGGCACGATCA+CGG | - | chr1.2:6993350-6993369 | None:intergenic | 55.0% | |
| CGACATGCTATGCCATGACC+AGG | - | chr1.2:6996800-6996819 | None:intergenic | 55.0% | |
| GCCACCACATCTGCACCAAA+TGG | - | chr1.2:6996364-6996383 | None:intergenic | 55.0% | |
| GTGGTGAAGGTTCAGCAGCT+AGG | + | chr1.2:6994488-6994507 | MS.gene016160:CDS | 55.0% | |
| ! | GGGCACTGCCCACATCAATA+TGG | - | chr1.2:6994716-6994735 | None:intergenic | 55.0% |
| !! | CCCATTTGGTGCAGATGTGG+TGG | + | chr1.2:6996360-6996379 | MS.gene016160:intron | 55.0% |
| CGAGTGTGGCACGATCACGG+TGG | - | chr1.2:6993347-6993366 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 6992779 | 6996826 | 6992779 | ID=MS.gene016160 |
| chr1.2 | mRNA | 6992779 | 6996826 | 6992779 | ID=MS.gene016160.t1;Parent=MS.gene016160 |
| chr1.2 | exon | 6992779 | 6992930 | 6992779 | ID=MS.gene016160.t1.exon1;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6992779 | 6992930 | 6992779 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6993166 | 6993232 | 6993166 | ID=MS.gene016160.t1.exon2;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6993166 | 6993232 | 6993166 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6993572 | 6993666 | 6993572 | ID=MS.gene016160.t1.exon3;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6993572 | 6993666 | 6993572 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6994462 | 6994564 | 6994462 | ID=MS.gene016160.t1.exon4;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6994462 | 6994564 | 6994462 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6995317 | 6995405 | 6995317 | ID=MS.gene016160.t1.exon5;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6995317 | 6995405 | 6995317 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6995541 | 6995697 | 6995541 | ID=MS.gene016160.t1.exon6;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6995541 | 6995697 | 6995541 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6995966 | 6996041 | 6995966 | ID=MS.gene016160.t1.exon7;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6995966 | 6996041 | 6995966 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6996374 | 6996432 | 6996374 | ID=MS.gene016160.t1.exon8;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6996374 | 6996432 | 6996374 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6996517 | 6996653 | 6996517 | ID=MS.gene016160.t1.exon9;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6996517 | 6996653 | 6996517 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| chr1.2 | exon | 6996748 | 6996826 | 6996748 | ID=MS.gene016160.t1.exon10;Parent=MS.gene016160.t1 |
| chr1.2 | CDS | 6996748 | 6996826 | 6996748 | ID=cds.MS.gene016160.t1;Parent=MS.gene016160.t1 |
| Gene Sequence |
| Protein sequence |
