AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017243

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017243.t1 MTR_5g075530 99.270 274 2 0 1 274 49 322 0.0 558
MS.gene017243.t1 MTR_3g467620 83.577 274 39 3 1 274 1 268 9.26e-150 419
MS.gene017243.t1 MTR_5g075530 98.844 173 2 0 1 173 49 221 1.09e-121 347
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017243.t1 AT5G20920 72.794 272 66 3 1 270 1 266 8.11e-133 377
MS.gene017243.t1 AT5G20920 72.794 272 66 3 1 270 1 266 8.11e-133 377
MS.gene017243.t1 AT5G20920 72.794 272 65 4 1 270 1 265 2.18e-131 373
MS.gene017243.t1 AT3G07920 68.421 152 40 2 123 270 17 164 1.82e-68 209
MS.gene017243.t1 AT5G01940 55.634 142 58 3 119 259 72 209 8.08e-48 159
MS.gene017243.t1 AT5G01940 55.634 142 58 3 119 259 104 241 1.33e-47 159
MS.gene017243.t1 AT5G01940 52.564 156 65 4 119 267 72 225 1.11e-45 154

Find 69 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCTTGCTTGCTGAAC+TGG 0.152413 5.2:-63488876 MS.gene017243:CDS
TGATGAATCAATGGATAAAT+TGG 0.263265 5.2:-63490502 MS.gene017243:CDS
AGAATTCCTTCAAAGTTCTT+TGG 0.305356 5.2:+63488797 None:intergenic
TGGAGAGGCAGTTGAAGATT+TGG 0.342163 5.2:-63490142 MS.gene017243:CDS
CTTTGCAGCCTCGTTATCCT+TGG 0.346996 5.2:-63489949 MS.gene017243:CDS
CGCCGATCTCCAGCCAGATC+TGG 0.364048 5.2:+63489341 None:intergenic
TACTGCTTGCAGTGTGGATC+AGG 0.377983 5.2:-63488386 MS.gene017243:intron
GATGAATATGTCATTTGTAT+TGG 0.394913 5.2:-63488540 MS.gene017243:CDS
GGTACTAGTGGTTCCCTTGA+TGG 0.396000 5.2:-63488854 MS.gene017243:CDS
GCAACAAAACCAGCTTTGAT+TGG 0.396441 5.2:+63488350 None:intergenic
TCCTTTGAAAGTAATGTGTC+TGG 0.399517 5.2:+63488507 None:intergenic
TTGTGCCTTCACGGAGAACT+TGG 0.412424 5.2:+63489297 None:intergenic
TTTGCACCAAAGAACTTTGA+AGG 0.417542 5.2:-63488803 MS.gene017243:CDS
CCTTGATGGACAACAGAGAT+TGG 0.437686 5.2:-63488840 MS.gene017243:CDS
TCCATTGATTCATCATCTGC+AGG 0.449745 5.2:+63490510 None:intergenic
TGTGCCTTCACGGAGAACTT+GGG 0.454068 5.2:+63489298 None:intergenic
CCAATCTCTGTTGTCCATCA+AGG 0.456276 5.2:+63488840 None:intergenic
TATTCACTTGCAGTTTCTGA+TGG 0.471762 5.2:-63490350 MS.gene017243:intron
GTGTTGGCAGAAGGAATGCC+GGG 0.472327 5.2:-63488325 MS.gene017243:CDS
AAGAAAGCCATAACATGGTC+TGG 0.472766 5.2:+63488890 None:intergenic
GCTTTCTTGCTTGCTGAACT+GGG 0.473966 5.2:-63488875 MS.gene017243:CDS
TGAAACACCAAGTGGTTTGA+AGG 0.477271 5.2:-63491663 MS.gene017243:CDS
TTTGCAGCCTCGTTATCCTT+GGG 0.480164 5.2:-63489948 MS.gene017243:CDS
ACGTGAACATAATCCAGATC+TGG 0.488853 5.2:-63489354 MS.gene017243:CDS
CGTGTTGGCAGAAGGAATGC+CGG 0.492506 5.2:-63488326 MS.gene017243:CDS
TCCTGCAGATGATGAATCAA+TGG 0.495581 5.2:-63490511 MS.gene017243:CDS
CTTCTTTCTCCGGTGTGAGA+AGG 0.497603 5.2:-63488475 MS.gene017243:intron
CAGCCTCGTTATCCTTGGGA+AGG 0.501422 5.2:-63489944 MS.gene017243:CDS
AGAACCGTCTCTTCTTTCTC+CGG 0.503608 5.2:-63488485 MS.gene017243:CDS
TCGACCGCCAGACCATGTTA+TGG 0.515326 5.2:-63488897 MS.gene017243:CDS
TCCAGACACATTACTTTCAA+AGG 0.516179 5.2:-63488508 MS.gene017243:CDS
TTGTTGCTCGTGTTGGCAGA+AGG 0.525657 5.2:-63488334 MS.gene017243:CDS
ATCCAGATCTGGCTGGAGAT+CGG 0.528055 5.2:-63489343 MS.gene017243:CDS
CAACAGAGATTGGTCGTGAA+GGG 0.528713 5.2:-63488830 MS.gene017243:CDS
GTGCCTTCACGGAGAACTTG+GGG 0.537378 5.2:+63489299 None:intergenic
TGATCGTGATTATACATATG+AGG 0.537913 5.2:-63489918 MS.gene017243:CDS
TCAGTTGCTCCAATCAAAGC+TGG 0.541836 5.2:-63488359 MS.gene017243:CDS
ATCGGCGAAGGACAGTTATG+AGG 0.542408 5.2:-63489325 MS.gene017243:CDS
GAGAAGATAGAAAATCTGTC+AGG 0.544015 5.2:-63490477 MS.gene017243:intron
ACCTCCTCCTTCAAACCACT+TGG 0.546295 5.2:+63491656 None:intergenic
TATTAACATACGATTTGCAC+AGG 0.547596 5.2:+63489246 None:intergenic
ATTCACTTGCAGTTTCTGAT+GGG 0.549550 5.2:-63490349 MS.gene017243:intron
TTTGGTACAGCTTCTTGGCA+GGG 0.550765 5.2:-63489390 MS.gene017243:intron
TCTTCAACTGCCTCTCCACT+AGG 0.552585 5.2:+63490147 None:intergenic
CAATCTCTGTTGTCCATCAA+GGG 0.557834 5.2:+63488841 None:intergenic
CTTGCTGAACTGGGTACTAG+TGG 0.558172 5.2:-63488866 MS.gene017243:CDS
ACCAAGTGGTTTGAAGGAGG+AGG 0.558508 5.2:-63491657 MS.gene017243:CDS
ATCTGGCTGGAGATCGGCGA+AGG 0.563488 5.2:-63489337 MS.gene017243:CDS
GAACATAATCCAGATCTGGC+TGG 0.564898 5.2:-63489350 MS.gene017243:CDS
AGCCTCGTTATCCTTGGGAA+GGG 0.579244 5.2:-63489943 MS.gene017243:CDS
AATAAGGCCAAATCATGCCC+CGG 0.603478 5.2:+63488307 None:intergenic
CCTCCCCAAGTTCTCCGTGA+AGG 0.608543 5.2:-63489302 MS.gene017243:CDS
ACAACAGAGATTGGTCGTGA+AGG 0.611687 5.2:-63488831 MS.gene017243:CDS
TTAAATGATATTGATGAGAG+TGG 0.613941 5.2:-63490171 MS.gene017243:CDS
GAGGCAGTTGAAGATTTGGA+TGG 0.616117 5.2:-63490138 MS.gene017243:intron
CTCCCTTCCCAAGGATAACG+AGG 0.619640 5.2:+63489941 None:intergenic
CAAGCAAGAAAGCCATAACA+TGG 0.625960 5.2:+63488885 None:intergenic
CCTTCACGGAGAACTTGGGG+AGG 0.626648 5.2:+63489302 None:intergenic
AATACTTACTGATATATCGT+CGG 0.636337 5.2:+63488774 None:intergenic
TCACGATCACTCCCTTCCCA+AGG 0.642187 5.2:+63489932 None:intergenic
ATTGATGAGAGTGGTCCTAG+TGG 0.645228 5.2:-63490162 MS.gene017243:CDS
AACACCAAGTGGTTTGAAGG+AGG 0.651800 5.2:-63491660 MS.gene017243:CDS
TGTTGGCAGAAGGAATGCCG+GGG 0.662824 5.2:-63488324 MS.gene017243:CDS
TGAGAGTGGTCCTAGTGGAG+AGG 0.666586 5.2:-63490157 MS.gene017243:CDS
GAAGATTCACCTTCTCACAC+CGG 0.667959 5.2:+63488466 None:intergenic
CACACCGGAGAAAGAAGAGA+CGG 0.669379 5.2:+63488481 None:intergenic
TCGTGATTATACATATGAGG+AGG 0.690862 5.2:-63489915 MS.gene017243:intron
AAAGCCATAACATGGTCTGG+CGG 0.709853 5.2:+63488893 None:intergenic
ATGGCAGATGAAACACCAAG+TGG 0.740265 5.2:-63491671 MS.gene017243:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAATATTTTTTTTTTATC+TGG - chr5.2:63490760-63490779 MS.gene017243:intron 10.0%
!!! TAAAAAAAATGACATTTTAA+AGG - chr5.2:63488779-63488798 MS.gene017243:intron 10.0%
!!! TAAAATGTCATTTTTTTTAT+TGG + chr5.2:63488778-63488797 None:intergenic 10.0%
!! ATATAATCAAATATTCTCTA+AGG + chr5.2:63490414-63490433 None:intergenic 15.0%
!! TAGAGAATATTTGATTATAT+AGG - chr5.2:63490414-63490433 MS.gene017243:intron 15.0%
!!! TTTTTAAAGTTATCTGAAAA+TGG - chr5.2:63489589-63489608 MS.gene017243:intron 15.0%
!! AAGATACTAATATATGAATC+AGG - chr5.2:63489191-63489210 MS.gene017243:intron 20.0%
!! ATACTAATATATGATAACCA+AGG - chr5.2:63489128-63489147 MS.gene017243:intron 20.0%
!! ATACTAATATATGATAACCA+TGG - chr5.2:63489128-63489147 MS.gene017243:intron 20.0%
!! ATGTTAATTAATGATCAACA+TGG - chr5.2:63490387-63490406 MS.gene017243:intron 20.0%
!! ATTTATAATGCATGATATCT+TGG - chr5.2:63488643-63488662 MS.gene017243:intron 20.0%
!! GATTCAAATTAGTTATTATC+TGG - chr5.2:63490248-63490267 MS.gene017243:intron 20.0%
!! TGTATTTCATTCTTGTAAAT+TGG - chr5.2:63488598-63488617 MS.gene017243:intron 20.0%
!! TGTTAATTAATGATCAACAT+GGG - chr5.2:63490388-63490407 MS.gene017243:intron 20.0%
!! TTGTATTAAATAGTGTATCA+CGG + chr5.2:63488441-63488460 None:intergenic 20.0%
!! TTGTTAAACAATAGCTATAT+CGG - chr5.2:63488407-63488426 MS.gene017243:intron 20.0%
!!! AATAGTTTAATTGACTGTTT+TGG - chr5.2:63490302-63490321 MS.gene017243:intron 20.0%
!!! ATAGTTTAATTGACTGTTTT+GGG - chr5.2:63490303-63490322 MS.gene017243:intron 20.0%
!!! ATATAATTTGTGTTTGATAG+TGG - chr5.2:63489902-63489921 MS.gene017243:intron 20.0%
!!! ATGACATTTTAAAGGAAATT+AGG - chr5.2:63488787-63488806 MS.gene017243:CDS 20.0%
!!! CTAGAAATTTTTGTATTGAT+TGG - chr5.2:63489062-63489081 MS.gene017243:intron 20.0%
!!! GTGATTCAAATTAGTTTTTT+TGG - chr5.2:63490217-63490236 MS.gene017243:intron 20.0%
!!! TTCTTTTGTCATTTGATTTA+TGG + chr5.2:63488884-63488903 None:intergenic 20.0%
!!! TTGATAATAAGATTCAATTC+AGG + chr5.2:63488740-63488759 None:intergenic 20.0%
! AACAGTCAATTAAACTATTC+TGG + chr5.2:63490301-63490320 None:intergenic 25.0%
! AAGTGAATAAAGAATAACCA+AGG + chr5.2:63490952-63490971 None:intergenic 25.0%
! AATACTGAATGGTAAAACAA+TGG + chr5.2:63491570-63491589 None:intergenic 25.0%
! AATACTTACTGATATATCGT+CGG + chr5.2:63491219-63491238 None:intergenic 25.0%
! AATGGTAAAACAATGGAAAT+GGG + chr5.2:63491563-63491582 None:intergenic 25.0%
! ACAAAAAAAACCGATTACAT+CGG + chr5.2:63488581-63488600 None:intergenic 25.0%
! ACTGAAAAAAAAGTTGTTGT+TGG - chr5.2:63488922-63488941 MS.gene017243:intron 25.0%
! AGTGAATAAAGAATAACCAA+GGG + chr5.2:63490951-63490970 None:intergenic 25.0%
! ATGTACATCAGCATAAAAAA+TGG + chr5.2:63490105-63490124 None:intergenic 25.0%
! CAAATAAAAAACTTCAACTC+TGG + chr5.2:63489726-63489745 None:intergenic 25.0%
! GTACTTATATATGATAACCA+TGG - chr5.2:63489340-63489359 MS.gene017243:CDS 25.0%
! GTATGTAGAAGAAAAATACT+GGG + chr5.2:63490992-63491011 None:intergenic 25.0%
! TAATATATGATAACCAAGGT+TGG - chr5.2:63489132-63489151 MS.gene017243:intron 25.0%
! TAATATATGATAACCATGGT+TGG - chr5.2:63489318-63489337 MS.gene017243:CDS 25.0%
! TGATGAATCAATGGATAAAT+TGG - chr5.2:63489488-63489507 MS.gene017243:intron 25.0%
! TTAAAGTTATCTGAAAATGG+TGG - chr5.2:63489592-63489611 MS.gene017243:intron 25.0%
! TTAAATGATATTGATGAGAG+TGG - chr5.2:63489819-63489838 MS.gene017243:intron 25.0%
! TTATATATGATAACCATGGT+TGG - chr5.2:63489344-63489363 MS.gene017243:CDS 25.0%
! TTCCAAGTAAAAACTGAAAA+GGG + chr5.2:63490532-63490551 None:intergenic 25.0%
! TTTCCAAGTAAAAACTGAAA+AGG + chr5.2:63490533-63490552 None:intergenic 25.0%
!! AACTGTGTTTGTGAATTTTA+TGG - chr5.2:63490720-63490739 MS.gene017243:intron 25.0%
!! ATTCTACATTTTATCCTTGT+TGG - chr5.2:63490437-63490456 MS.gene017243:intron 25.0%
!! ATTCTTGTAAATTGGTGATT+TGG - chr5.2:63488606-63488625 MS.gene017243:intron 25.0%
!! GATGAATATGTCATTTGTAT+TGG - chr5.2:63491450-63491469 MS.gene017243:intron 25.0%
!! GGTTATTTCAAACTATGAAT+AGG - chr5.2:63488696-63488715 MS.gene017243:intron 25.0%
!! TTCATAGTTTGAAATAACCA+TGG + chr5.2:63488695-63488714 None:intergenic 25.0%
!! TTCTTCTTCTTTTTCTTAGT+AGG + chr5.2:63489441-63489460 None:intergenic 25.0%
!! TTGAATCTTGAATCATTTTG+AGG + chr5.2:63488860-63488879 None:intergenic 25.0%
!! TTTTTCTTAGTAGGATCAAA+TGG + chr5.2:63489432-63489451 None:intergenic 25.0%
!!! CAGAGTTGAAGTTTTTTATT+TGG - chr5.2:63489724-63489743 MS.gene017243:intron 25.0%
AATCCACAAGGAAAAAAAAG+GGG + chr5.2:63490570-63490589 None:intergenic 30.0%
AGAATCCACAAGGAAAAAAA+AGG + chr5.2:63490572-63490591 None:intergenic 30.0%
AGAATTCCTTCAAAGTTCTT+TGG + chr5.2:63491196-63491215 None:intergenic 30.0%
AGGGAAAATAAACTTACATC+TGG + chr5.2:63488361-63488380 None:intergenic 30.0%
AGTGACTCATTAGAATGAAT+CGG - chr5.2:63488962-63488981 MS.gene017243:intron 30.0%
ATCCAATCAATACAAATCTC+TGG + chr5.2:63489253-63489272 None:intergenic 30.0%
CAAAAAAAACCGATTACATC+GGG + chr5.2:63488580-63488599 None:intergenic 30.0%
CAATTCAGGATTCAGAAAAT+AGG + chr5.2:63488726-63488745 None:intergenic 30.0%
GAAAACGATAGATAACTACA+GGG + chr5.2:63488380-63488399 None:intergenic 30.0%
GAATCCACAAGGAAAAAAAA+GGG + chr5.2:63490571-63490590 None:intergenic 30.0%
GAATGGTAAAACAATGGAAA+TGG + chr5.2:63491564-63491583 None:intergenic 30.0%
GAGGATAAAAAATCAGTTTC+TGG + chr5.2:63491014-63491033 None:intergenic 30.0%
GCTAATGAATGCTAAACTTA+TGG - chr5.2:63489966-63489985 MS.gene017243:CDS 30.0%
GGTATGTAGAAGAAAAATAC+TGG + chr5.2:63490993-63491012 None:intergenic 30.0%
TAATTTGAATCACAGATGAG+AGG + chr5.2:63490210-63490229 None:intergenic 30.0%
TATTAACATACGATTTGCAC+AGG + chr5.2:63490747-63490766 None:intergenic 30.0%
TCATATATAAGTACCAACCA+TGG + chr5.2:63489334-63489353 None:intergenic 30.0%
TGAAAACGATAGATAACTAC+AGG + chr5.2:63488381-63488400 None:intergenic 30.0%
TGATCGTGATTATACATATG+AGG - chr5.2:63490072-63490091 MS.gene017243:intron 30.0%
TTAAAAACATAAACCATGCC+AGG + chr5.2:63489576-63489595 None:intergenic 30.0%
TTTGGCTAGACTAGATTTAT+TGG - chr5.2:63489742-63489761 MS.gene017243:intron 30.0%
! AAAATCGTTTAGAATCCACA+AGG + chr5.2:63490582-63490601 None:intergenic 30.0%
! TACCCTTTTCAGTTTTTACT+TGG - chr5.2:63490527-63490546 MS.gene017243:CDS 30.0%
! TGACAGATTTTCTATCTTCT+CGG + chr5.2:63489514-63489533 None:intergenic 30.0%
! TGTGGATTCTAAACGATTTT+TGG - chr5.2:63490582-63490601 MS.gene017243:intron 30.0%
!! AATGACAAAAGAAAAGTGTC+TGG - chr5.2:63488891-63488910 MS.gene017243:CDS 30.0%
!! GAAGTTTGTTATTTGATTGC+AGG - chr5.2:63489782-63489801 MS.gene017243:intron 30.0%
!! TGAAAGCATTCTTAAAACCA+AGG + chr5.2:63488534-63488553 None:intergenic 30.0%
AAATCAGCTCAGAAACACTA+TGG + chr5.2:63490185-63490204 None:intergenic 35.0%
AATCTGCTGCATTTCAGAAA+TGG - chr5.2:63491256-63491275 MS.gene017243:intron 35.0%
AATGCATGATATCTTGGTCA+TGG - chr5.2:63488649-63488668 MS.gene017243:intron 35.0%
ACATCTTGAACTTTCACTAG+AGG - chr5.2:63490797-63490816 MS.gene017243:intron 35.0%
ATTCACTTGCAGTTTCTGAT+GGG - chr5.2:63489641-63489660 MS.gene017243:intron 35.0%
GAGAAGATAGAAAATCTGTC+AGG - chr5.2:63489513-63489532 MS.gene017243:intron 35.0%
GAGGTTAGTAGATGATACAA+GGG + chr5.2:63488841-63488860 None:intergenic 35.0%
GGGATTTATGACAATGAATC+AGG - chr5.2:63489003-63489022 MS.gene017243:intron 35.0%
GGGTAGATTGAAAATGCTTT+AGG + chr5.2:63490512-63490531 None:intergenic 35.0%
GTGACTCATTAGAATGAATC+GGG - chr5.2:63488963-63488982 MS.gene017243:intron 35.0%
GTTATCTGAAAATGGTGGTT+AGG - chr5.2:63489597-63489616 MS.gene017243:intron 35.0%
TATTCACTTGCAGTTTCTGA+TGG - chr5.2:63489640-63489659 MS.gene017243:intron 35.0%
TCCAGACACATTACTTTCAA+AGG - chr5.2:63491482-63491501 MS.gene017243:intron 35.0%
TCGTGATTATACATATGAGG+AGG - chr5.2:63490075-63490094 MS.gene017243:intron 35.0%
TGAGGTTAGTAGATGATACA+AGG + chr5.2:63488842-63488861 None:intergenic 35.0%
TTTGCACCAAAGAACTTTGA+AGG - chr5.2:63491187-63491206 MS.gene017243:intron 35.0%
! ATTGGTAGCAATTTGACACT+TGG - chr5.2:63489760-63489779 MS.gene017243:intron 35.0%
! CACCAGAGATTTGTATTGAT+TGG - chr5.2:63489248-63489267 MS.gene017243:intron 35.0%
! TCCTTTGAAAGTAATGTGTC+TGG + chr5.2:63491486-63491505 None:intergenic 35.0%
! TTGTTGGCTACACTATGTTT+AGG - chr5.2:63488938-63488957 MS.gene017243:intron 35.0%
! TTTGTAAGCATATTAGCCTG+AGG - chr5.2:63491380-63491399 MS.gene017243:intron 35.0%
!! CATTCAGTATTCTAAAACGC+TGG - chr5.2:63491579-63491598 MS.gene017243:intron 35.0%
!! TAGTTATTATCTGGTTCTCG+TGG - chr5.2:63490257-63490276 MS.gene017243:intron 35.0%
!!! CAGCGTTTTAGAATACTGAA+TGG + chr5.2:63491581-63491600 None:intergenic 35.0%
AACAAGCATTAGCAATCTCC+TGG - chr5.2:63489555-63489574 MS.gene017243:intron 40.0%
AAGAAAGCCATAACATGGTC+TGG + chr5.2:63491103-63491122 None:intergenic 40.0%
ACATCCAGTACAATAACCTC+AGG + chr5.2:63491399-63491418 None:intergenic 40.0%
ACCATGGTACCAACTAATCA+AGG + chr5.2:63488679-63488698 None:intergenic 40.0%
ACGTGAACATAATCCAGATC+TGG - chr5.2:63490636-63490655 MS.gene017243:intron 40.0%
AGCAACAGCACATTAACAAG+AGG + chr5.2:63491045-63491064 None:intergenic 40.0%
AGGAAAAAAAAGGGGAGGAT+TGG + chr5.2:63490562-63490581 None:intergenic 40.0%
ATTACATCGGGCACAATCAA+AGG + chr5.2:63488568-63488587 None:intergenic 40.0%
CAACAGCACATTAACAAGAG+GGG + chr5.2:63491043-63491062 None:intergenic 40.0%
CAAGCAAGAAAGCCATAACA+TGG + chr5.2:63491108-63491127 None:intergenic 40.0%
CAATCTCTGTTGTCCATCAA+GGG + chr5.2:63491152-63491171 None:intergenic 40.0%
CATGGATCTCCTTGATTAGT+TGG - chr5.2:63488667-63488686 MS.gene017243:intron 40.0%
GACTACAAGTAATGCCTTGA+GGG - chr5.2:63489940-63489959 MS.gene017243:CDS 40.0%
GCAACAGCACATTAACAAGA+GGG + chr5.2:63491044-63491063 None:intergenic 40.0%
TCCTGCAGATGATGAATCAA+TGG - chr5.2:63489479-63489498 MS.gene017243:intron 40.0%
TGAAACACCAAGTGGTTTGA+AGG - chr5.2:63488327-63488346 MS.gene017243:CDS 40.0%
TGACTACAAGTAATGCCTTG+AGG - chr5.2:63489939-63489958 MS.gene017243:CDS 40.0%
TTAGCCTGAGGTTATTGTAC+TGG - chr5.2:63491392-63491411 MS.gene017243:intron 40.0%
TTGATTGTGCCCGATGTAAT+CGG - chr5.2:63488568-63488587 MS.gene017243:intron 40.0%
! ACAAACTGAAGTACCAACCA+TGG + chr5.2:63489360-63489379 None:intergenic 40.0%
! ACAAACTGAAGTACCAACCT+TGG + chr5.2:63489148-63489167 None:intergenic 40.0%
! CAAGTGATTTTCATCACCCT+TGG - chr5.2:63490932-63490951 MS.gene017243:intron 40.0%
! CAGTTTTCTTTGTGCCTTCA+CGG + chr5.2:63490705-63490724 None:intergenic 40.0%
! GCAACAAAACCAGCTTTGAT+TGG + chr5.2:63491643-63491662 None:intergenic 40.0%
! TCCTTGATTAGTTGGTACCA+TGG - chr5.2:63488675-63488694 MS.gene017243:intron 40.0%
!! CTCTGGAAAAAGTGTCTTAC+AGG + chr5.2:63489709-63489728 None:intergenic 40.0%
!! TCCATTGATTCATCATCTGC+AGG + chr5.2:63489483-63489502 None:intergenic 40.0%
!! TGAATTGGCTTGATCCAACA+AGG + chr5.2:63490454-63490473 None:intergenic 40.0%
!! TTAACAAGAGGGGAGTATTG+AGG + chr5.2:63491033-63491052 None:intergenic 40.0%
!!! CGATTTTTGGTACAGCTTCT+TGG - chr5.2:63490595-63490614 MS.gene017243:intron 40.0%
AAAGCCATAACATGGTCTGG+CGG + chr5.2:63491100-63491119 None:intergenic 45.0%
AACACCAAGTGGTTTGAAGG+AGG - chr5.2:63488330-63488349 MS.gene017243:CDS 45.0%
ACAAGTAATGCCTTGAGGGA+AGG - chr5.2:63489944-63489963 MS.gene017243:CDS 45.0%
AGAACCGTCTCTTCTTTCTC+CGG - chr5.2:63491505-63491524 MS.gene017243:intron 45.0%
ATGGCAGATGAAACACCAAG+TGG - chr5.2:63488319-63488338 MS.gene017243:CDS 45.0%
ATTGATGAGAGTGGTCCTAG+TGG - chr5.2:63489828-63489847 MS.gene017243:intron 45.0%
CCAATCTCTGTTGTCCATCA+AGG + chr5.2:63491153-63491172 None:intergenic 45.0%
CCACAAGGAAAAAAAAGGGG+AGG + chr5.2:63490567-63490586 None:intergenic 45.0%
GAACATAATCCAGATCTGGC+TGG - chr5.2:63490640-63490659 MS.gene017243:intron 45.0%
GAAGATTCACCTTCTCACAC+CGG + chr5.2:63491527-63491546 None:intergenic 45.0%
GAGGCAGTTGAAGATTTGGA+TGG - chr5.2:63489852-63489871 MS.gene017243:intron 45.0%
GTACTGTTACCCGATCTTTC+AGG - chr5.2:63491065-63491084 MS.gene017243:intron 45.0%
GTCGATGCATCCTGAAAGAT+CGG + chr5.2:63491078-63491097 None:intergenic 45.0%
GTGATCCAAGGGAAGTGAAT+TGG + chr5.2:63490469-63490488 None:intergenic 45.0%
TAAAACATCAGCCCGTCAGA+AGG + chr5.2:63490329-63490348 None:intergenic 45.0%
TCAAGCCAATTCACTTCCCT+TGG - chr5.2:63490461-63490480 MS.gene017243:intron 45.0%
TCAGTTGCTCCAATCAAAGC+TGG - chr5.2:63491631-63491650 MS.gene017243:intron 45.0%
TCGATGCATCCTGAAAGATC+GGG + chr5.2:63491077-63491096 None:intergenic 45.0%
TGGAGAGGCAGTTGAAGATT+TGG - chr5.2:63489848-63489867 MS.gene017243:intron 45.0%
TTTGCAGCCTCGTTATCCTT+GGG - chr5.2:63490042-63490061 MS.gene017243:intron 45.0%
TTTGGTACAGCTTCTTGGCA+GGG - chr5.2:63490600-63490619 MS.gene017243:intron 45.0%
! ACAACAGAGATTGGTCGTGA+AGG - chr5.2:63491159-63491178 MS.gene017243:intron 45.0%
! CAACAGAGATTGGTCGTGAA+GGG - chr5.2:63491160-63491179 MS.gene017243:intron 45.0%
! CCTTGATGGACAACAGAGAT+TGG - chr5.2:63491150-63491169 MS.gene017243:intron 45.0%
! GCTTTCTTGCTTGCTGAACT+GGG - chr5.2:63491115-63491134 MS.gene017243:intron 45.0%
! TTTTGGTACAGCTTCTTGGC+AGG - chr5.2:63490599-63490618 MS.gene017243:intron 45.0%
!! CATTCATTAGCCTTCCCTCA+AGG + chr5.2:63489957-63489976 None:intergenic 45.0%
!!! CCTCCCCTTTTTTTTCCTTG+TGG - chr5.2:63490564-63490583 MS.gene017243:CDS 45.0%
!! CAATAAATAATATTATAAAT+TGG - chr5.2:63490821-63490840 MS.gene017243:intron 5.0%
!! CAATTTATAATATTATTTAT+TGG + chr5.2:63490823-63490842 None:intergenic 5.0%
ACCAAGGTTGACGCAGATAG+CGG + chr5.2:63488518-63488537 None:intergenic 50.0%
ACCAAGTGGTTTGAAGGAGG+AGG - chr5.2:63488333-63488352 MS.gene017243:CDS 50.0%
ACCTCCTCCTTCAAACCACT+TGG + chr5.2:63488337-63488356 None:intergenic 50.0%
AGCCTCGTTATCCTTGGGAA+GGG - chr5.2:63490047-63490066 MS.gene017243:intron 50.0%
ATCCAGATCTGGCTGGAGAT+CGG - chr5.2:63490647-63490666 MS.gene017243:intron 50.0%
ATCGGCGAAGGACAGTTATG+AGG - chr5.2:63490665-63490684 MS.gene017243:intron 50.0%
CACACCGGAGAAAGAAGAGA+CGG + chr5.2:63491512-63491531 None:intergenic 50.0%
CTGGTTTACTGCTTGCAGTG+TGG - chr5.2:63491598-63491617 MS.gene017243:intron 50.0%
CTTCTTTCTCCGGTGTGAGA+AGG - chr5.2:63491515-63491534 MS.gene017243:intron 50.0%
CTTGCTGAACTGGGTACTAG+TGG - chr5.2:63491124-63491143 MS.gene017243:intron 50.0%
CTTTGCAGCCTCGTTATCCT+TGG - chr5.2:63490041-63490060 MS.gene017243:intron 50.0%
GAACACAGCTCGTGATCCAA+GGG + chr5.2:63490480-63490499 None:intergenic 50.0%
GCATTAGCAATCTCCTGGCA+TGG - chr5.2:63489560-63489579 MS.gene017243:intron 50.0%
GGGATGCATTGCAGTGAGTT+GGG - chr5.2:63488983-63489002 MS.gene017243:intron 50.0%
GGTACTAGTGGTTCCCTTGA+TGG - chr5.2:63491136-63491155 MS.gene017243:intron 50.0%
TACTGCTTGCAGTGTGGATC+AGG - chr5.2:63491604-63491623 MS.gene017243:intron 50.0%
TCTTCAACTGCCTCTCCACT+AGG + chr5.2:63489846-63489865 None:intergenic 50.0%
TGAACACAGCTCGTGATCCA+AGG + chr5.2:63490481-63490500 None:intergenic 50.0%
TGTGCCTTCACGGAGAACTT+GGG + chr5.2:63490695-63490714 None:intergenic 50.0%
TTGTGCCTTCACGGAGAACT+TGG + chr5.2:63490696-63490715 None:intergenic 50.0%
! GGCTTTCTTGCTTGCTGAAC+TGG - chr5.2:63491114-63491133 MS.gene017243:intron 50.0%
! GGGACTGACAGTGCATTTTC+TGG - chr5.2:63489661-63489680 MS.gene017243:intron 50.0%
! TTGTTGCTCGTGTTGGCAGA+AGG - chr5.2:63491656-63491675 MS.gene017243:CDS 50.0%
!! ACTGTTTTGGGCCTTCTGAC+GGG - chr5.2:63490315-63490334 MS.gene017243:CDS 50.0%
!! GACTGTTTTGGGCCTTCTGA+CGG - chr5.2:63490314-63490333 MS.gene017243:CDS 50.0%
!!! GCTGGTTTTGTTGCTCGTGT+TGG - chr5.2:63491649-63491668 MS.gene017243:CDS 50.0%
CAGCCTCGTTATCCTTGGGA+AGG - chr5.2:63490046-63490065 MS.gene017243:intron 55.0%
CGGGATGCATTGCAGTGAGT+TGG - chr5.2:63488982-63489001 MS.gene017243:intron 55.0%
CTCCCTTCCCAAGGATAACG+AGG + chr5.2:63490052-63490071 None:intergenic 55.0%
GTGCCTTCACGGAGAACTTG+GGG + chr5.2:63490694-63490713 None:intergenic 55.0%
TCACGATCACTCCCTTCCCA+AGG + chr5.2:63490061-63490080 None:intergenic 55.0%
TCCGCTATCTGCGTCAACCT+TGG - chr5.2:63488514-63488533 MS.gene017243:CDS 55.0%
TCGACCGCCAGACCATGTTA+TGG - chr5.2:63491093-63491112 MS.gene017243:intron 55.0%
TGAGAGTGGTCCTAGTGGAG+AGG - chr5.2:63489833-63489852 MS.gene017243:intron 55.0%
TGTTGGCAGAAGGAATGCCG+GGG - chr5.2:63491666-63491685 MS.gene017243:CDS 55.0%
! CGTGTTGGCAGAAGGAATGC+CGG - chr5.2:63491664-63491683 MS.gene017243:CDS 55.0%
! GTGTTGGCAGAAGGAATGCC+GGG - chr5.2:63491665-63491684 MS.gene017243:CDS 55.0%
ATCTGGCTGGAGATCGGCGA+AGG - chr5.2:63490653-63490672 MS.gene017243:intron 60.0%
CCTCCCCAAGTTCTCCGTGA+AGG - chr5.2:63490688-63490707 MS.gene017243:intron 60.0%
CCTTCACGGAGAACTTGGGG+AGG + chr5.2:63490691-63490710 None:intergenic 60.0%
CGCCGATCTCCAGCCAGATC+TGG + chr5.2:63490652-63490671 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 63488319 63491693 63488319 ID=MS.gene017243
chr5.2 mRNA 63488319 63491693 63488319 ID=MS.gene017243.t1;Parent=MS.gene017243
chr5.2 exon 63491649 63491693 63491649 ID=MS.gene017243.t1.exon1;Parent=MS.gene017243.t1
chr5.2 CDS 63491649 63491693 63491649 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63490478 63490589 63490478 ID=MS.gene017243.t1.exon2;Parent=MS.gene017243.t1
chr5.2 CDS 63490478 63490589 63490478 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63490304 63490359 63490304 ID=MS.gene017243.t1.exon3;Parent=MS.gene017243.t1
chr5.2 CDS 63490304 63490359 63490304 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63490139 63490208 63490139 ID=MS.gene017243.t1.exon4;Parent=MS.gene017243.t1
chr5.2 CDS 63490139 63490208 63490139 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63489916 63490004 63489916 ID=MS.gene017243.t1.exon5;Parent=MS.gene017243.t1
chr5.2 CDS 63489916 63490004 63489916 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63489257 63489402 63489257 ID=MS.gene017243.t1.exon6;Parent=MS.gene017243.t1
chr5.2 CDS 63489257 63489402 63489257 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63488783 63488925 63488783 ID=MS.gene017243.t1.exon7;Parent=MS.gene017243.t1
chr5.2 CDS 63488783 63488925 63488783 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63488476 63488561 63488476 ID=MS.gene017243.t1.exon8;Parent=MS.gene017243.t1
chr5.2 CDS 63488476 63488561 63488476 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
chr5.2 exon 63488319 63488396 63488319 ID=MS.gene017243.t1.exon9;Parent=MS.gene017243.t1
chr5.2 CDS 63488319 63488396 63488319 ID=cds.MS.gene017243.t1;Parent=MS.gene017243.t1
Gene Sequence

>MS.gene017243

ATGGCAGATGAAACACCAAGTGGTTTGAAGGAGGAGGTTCCAGATGTAAGTTTATTTTCCCTGTAGTTATCTATCGTTTTCAGCAATGTTGTTAAACAATAGCTATATCGGCTATTGTTCCGTGATACACTATTTAATACAAAATATTGTCAAATAGTTGCTAATGCGTAACAGAATTTTAACAATCTGCTGTTTTCCGCTATCTGCGTCAACCTTGGTTTTAAGAATGCTTTCACTGTTGTGTTTCCTTTGATTGTGCCCGATGTAATCGGTTTTTTTTGTATTTCATTCTTGTAAATTGGTGATTTGGTATGATGATTTTTGATTTATAATGCATGATATCTTGGTCATGGATCTCCTTGATTAGTTGGTACCATGGTTATTTCAAACTATGAATAGGAAGACCTATTTTCTGAATCCTGAATTGAATCTTATTATCAATTGTAAGTTACATTACCAATAAAAAAAATGACATTTTAAAGGAAATTAGGAAAAACAACTGACATAGAAAACTATAAGCCCTTGTATCATCTACTAACCTCAAAATGATTCAAGATTCAAGCCATAAATCAAATGACAAAAGAAAAGTGTCTGGCTATACAAACTGAAAAAAAAGTTGTTGTTGGCTACACTATGTTTAGGAAGTGACTCATTAGAATGAATCGGGATGCATTGCAGTGAGTTGGGATTTATGACAATGAATCAGGAGTCAAGATGAGATTTATGTTCAAAACAGATACACACTAGAAATTTTTGTATTGATTGGATTGTTACTATTGAATCGAGACATGACTTGCATATATTGTAAGATACTAATATATGATAACCAAGGTTGGTACTTCAGTTTGTAAGATATGACTTGCATATATTGTAAGATACTAATATATGAATCAGGACTCAAGATGAGATTTATGTTCAAAACAGACACACACCAGAGATTTGTATTGATTGGATTGTTACTATTGAGTCGAGTCATGAGTTGCATATATTGTTAGATACTAATATATGATAACCATGGTTGGTACTTATATATGATAACCATGGTTGGTACTTCAGTTTGTAGTAACTGTACTAACTGCTGCTGCACGAATTGCTAAATTGCAGATTGCGCCATTTGATCCTACTAAGAAAAAGAAGAAGAAGAAAGTTACAGTTATAGATCCTGCAGATGATGAATCAATGGATAAATTGGCCGAGAAGATAGAAAATCTGTCAGGTATATAAATTATAATAACAAACAAGCATTAGCAATCTCCTGGCATGGTTTATGTTTTTAAAGTTATCTGAAAATGGTGGTTAGGCAATGTTGATTATTAATAGCTATTCACTTGCAGTTTCTGATGGGACTGACAGTGCATTTTCTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTAAGACACTTTTTCCAGAGTTGAAGTTTTTTATTTGGCTAGACTAGATTTATTGGTAGCAATTTGACACTTGGAAGTTTGTTATTTGATTGCAGGTTGAAATAAGTAACTTAAATGATATTGATGAGAGTGGTCCTAGTGGAGAGGCAGTTGAAGATTTGGATGGTAAACAGTCAAATAAAATTATAAATGAATATAATTTGTGTTTGATAGTGGACTGTGCTTCGTTCTGACTACAAGTAATGCCTTGAGGGAAGGCTAATGAATGCTAAACTTATGGTGAAATTTATTGCTTTTAGATCATGCTGAAGATGATGAAGAAGAAGCTGTTGCTTTGCAGCCTCGTTATCCTTGGGAAGGGAGTGATCGTGATTATACATATGAGGAGGTATGCCATTTTTTATGCTGATGTACATCTAATTTACTTCTTTCAATGTCAATTTCAAATTTTTGTACACTTTCATCAACTAATTCCATAGTGTTTCTGAGCTGATTTTACCTCTCATCTGTGATTCAAATTAGTTTTTTTGGAACAAGATGATTCAAATTAGTTATTATCTGGTTCTCGTGGATCTCTTAGTCTATGTGTCCAGAATAGTTTAATTGACTGTTTTGGGCCTTCTGACGGGCTGATGTTTTACGTCTAGACTCGTGTGTTTCAATTTTTCAAATTGAAGCATGTTAATTAATGATCAACATGGGCCTTAGAGAATATTTGATTATATAGGATTCTACATTTTATCCTTGTTGGATCAAGCCAATTCACTTCCCTTGGATCACGAGCTGTGTTCAAAATATTACCTAAAGCATTTTCAATCTACCCTTTTCAGTTTTTACTTGGAAATTGCTTCCAATCCTCCCCTTTTTTTTCCTTGTGGATTCTAAACGATTTTTGGTACAGCTTCTTGGCAGGGTGTTCAACATTCTACGTGAACATAATCCAGATCTGGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCCCAAGTTCTCCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTTATGGACCTGTGCAAATCGTATGTTAATATTTTTTTTTTATCTGGCACTATACACATACACATCTTGAACTTTCACTAGAGGCCAATAAATAATATTATAAATTGGTGTATCTTTAGAACTTAACAATACATGTTCAAATGTATTAACATCTGCAAGATAACAATTGTGATTTGAGATGTTTTTAAAATGTTGTCAAGTGATTTTCATCACCCTTGGTTATTCTTTATTCACTTGTTGAGCTTGTATAATACCCAGTATTTTTCTTCTACATACCAGAAACTGATTTTTTATCCTCAATACTCCCCTCTTGTTAATGTGCTGTTGCTGTACTGTTACCCGATCTTTCAGGATGCATCGACCGCCAGACCATGTTATGGCTTTCTTGCTTGCTGAACTGGGTACTAGTGGTTCCCTTGATGGACAACAGAGATTGGTCGTGAAGGGAAGATTTGCACCAAAGAACTTTGAAGGAATTCTCCGACGATATATCAGTAAGTATTTGTTTTTAACGTTTAATAATCTGCTGCATTTCAGAAATGGATAGTTTCGTACGTATGAAAGTTCTGTTGTTGTTTGTGCTTTTGTTGCTCATATATTTTTCAGTATTTTTTCTTTTAAATTTTGCGAAGCAGAACAAAAAGTTTGTAAGCATATTAGCCTGAGGTTATTGTACTGGATGTTGATTTAAACTGTTACACATTCTCTTTCTCAGATGAATATGTCATTTGTATTGGATGCAAGAGTCCAGACACATTACTTTCAAAGGAGAACCGTCTCTTCTTTCTCCGGTGTGAGAAGGTGAATCTTCTGTTACACTTTTACCCATTTCCATTGTTTTACCATTCAGTATTCTAAAACGCTGGTTTACTGCTTGCAGTGTGGATCAGGAAGATCAGTTGCTCCAATCAAAGCTGGTTTTGTTGCTCGTGTTGGCAGAAGGAATGCCGGGGCATGA
Protein sequence

>MS.gene017243.t1

MADETPSGLKEEVPDIAPFDPTKKKKKKKVTVIDPADDESMDKLAEKIENLSVSDGTDSAFSGLKKKKKKPVEISNLNDIDESGPSGEAVEDLDDHAEDDEEEAVALQPRYPWEGSDRDYTYEELLGRVFNILREHNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKSMHRPPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICIGCKSPDTLLSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGA