AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017692

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017692.t1 MTR_7g089080 98.048 461 8 1 1 461 1 460 0.0 926
MS.gene017692.t1 MTR_5g088980 53.463 462 164 14 1 456 1 417 1.88e-152 440
MS.gene017692.t1 MTR_8g074000 47.670 279 133 4 183 457 159 428 1.83e-84 266
MS.gene017692.t1 MTR_5g023790 46.403 278 138 3 183 457 155 424 6.04e-83 262
MS.gene017692.t1 MTR_5g023790 48.085 235 111 3 183 414 155 381 5.63e-72 232
MS.gene017692.t1 MTR_1g011470 41.392 273 155 5 183 452 145 415 2.38e-62 208
MS.gene017692.t1 MTR_3g088415 39.007 282 161 8 179 453 220 497 1.57e-57 198
MS.gene017692.t1 MTR_3g107970 39.636 275 157 7 183 452 197 467 3.38e-57 196
MS.gene017692.t1 MTR_1g018680 40.154 259 145 6 200 451 91 346 9.08e-55 187
MS.gene017692.t1 MTR_5g023790 51.235 162 78 1 183 343 155 316 1.88e-52 181
MS.gene017692.t1 MTR_2g102550 38.276 290 168 8 168 450 134 419 5.72e-52 181
MS.gene017692.t1 MTR_3g061680 38.783 263 149 5 193 450 15 270 1.31e-51 176
MS.gene017692.t1 MTR_3g088405 36.765 272 161 9 176 440 220 487 1.31e-51 182
MS.gene017692.t1 MTR_3g088415 42.396 217 119 5 179 392 220 433 2.84e-51 180
MS.gene017692.t1 MTR_3g060770 40.486 247 135 6 199 440 31 270 9.42e-51 174
MS.gene017692.t1 MTR_2g102520 36.842 285 171 7 178 456 194 475 2.51e-50 178
MS.gene017692.t1 MTR_3g102520 36.641 262 160 5 200 456 91 351 2.02e-48 170
MS.gene017692.t1 MTR_3g060820 38.132 257 147 6 199 450 21 270 3.34e-48 167
MS.gene017692.t1 MTR_3g060400 37.354 257 149 5 199 450 27 276 3.17e-47 164
MS.gene017692.t1 MTR_3g460990 37.354 257 149 5 199 450 27 276 3.17e-47 164
MS.gene017692.t1 MTR_3g102510 35.000 260 165 4 200 456 74 332 4.85e-47 166
MS.gene017692.t1 MTR_3g060410 39.301 229 132 3 226 450 130 355 4.16e-45 161
MS.gene017692.t1 MTR_5g044040 92.208 77 6 0 253 329 7 83 7.57e-45 153
MS.gene017692.t1 MTR_5g044040 60.938 64 17 1 407 462 60 123 4.69e-17 77.8
MS.gene017692.t1 MTR_3g102560 36.905 252 148 6 205 451 69 314 1.03e-41 151
MS.gene017692.t1 MTR_3g102530 33.577 274 167 5 181 451 78 339 5.56e-41 150
MS.gene017692.t1 MTR_3g088415 44.311 167 90 3 179 343 220 385 4.67e-40 148
MS.gene017692.t1 MTR_6g045270 37.687 268 142 8 199 457 45 296 4.61e-39 144
MS.gene017692.t1 MTR_5g011900 38.158 228 130 3 150 371 18 240 1.05e-36 135
MS.gene017692.t1 MTR_3g102540 33.594 256 156 7 204 452 13 261 2.01e-35 133
MS.gene017692.t1 MTR_2g005960 36.364 132 68 3 176 291 97 228 2.96e-19 87.0
MS.gene017692.t1 MTR_1g032850 30.366 191 121 6 230 416 370 552 1.90e-14 75.9
MS.gene017692.t1 MTR_3g103080 31.356 118 78 1 230 344 65 182 5.59e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017692.t1 AT5G06150 55.022 458 169 9 12 461 9 437 6.71e-159 457
MS.gene017692.t1 AT3G11520 55.677 458 154 13 1 457 1 410 3.13e-153 442
MS.gene017692.t1 AT4G37490 52.654 471 159 14 1 457 2 422 2.68e-140 409
MS.gene017692.t1 AT3G11520 56.145 415 133 13 1 414 1 367 1.20e-137 401
MS.gene017692.t1 AT2G26760 54.622 357 146 7 98 451 34 377 2.58e-125 370
MS.gene017692.t1 AT5G06150 55.294 340 121 7 12 343 9 325 4.30e-110 329
MS.gene017692.t1 AT1G76310 39.529 425 204 10 38 458 56 431 4.89e-91 283
MS.gene017692.t1 AT1G20610 38.293 457 216 10 21 457 19 429 1.25e-90 282
MS.gene017692.t1 AT1G76310 37.086 453 204 11 38 458 56 459 7.30e-85 268
MS.gene017692.t1 AT1G16330 41.883 308 166 5 155 458 350 648 3.29e-80 261
MS.gene017692.t1 AT1G76310 39.370 381 178 10 38 414 56 387 1.67e-78 249
MS.gene017692.t1 AT2G17620 48.921 278 131 3 183 457 154 423 2.68e-78 250
MS.gene017692.t1 AT1G34460 45.882 340 111 9 12 343 121 395 1.58e-75 245
MS.gene017692.t1 AT1G34460 45.882 340 111 9 12 343 121 395 2.34e-75 244
MS.gene017692.t1 AT1G34460 45.882 340 111 9 12 343 121 395 2.34e-75 244
MS.gene017692.t1 AT1G34460 45.882 340 111 9 12 343 121 395 2.34e-75 244
MS.gene017692.t1 AT1G34460 45.882 340 111 9 12 343 121 395 2.34e-75 244
MS.gene017692.t1 AT1G34460 45.294 340 110 8 12 343 121 392 2.80e-75 244
MS.gene017692.t1 AT1G34460 45.294 340 110 8 12 343 121 392 2.80e-75 244
MS.gene017692.t1 AT1G34460 45.882 340 111 9 12 343 121 395 3.31e-75 244
MS.gene017692.t1 AT1G34460 45.690 348 112 11 6 343 101 381 9.16e-75 243
MS.gene017692.t1 AT4G35620 47.292 277 139 3 183 458 155 425 1.41e-74 241
MS.gene017692.t1 AT4G35620 49.785 233 110 3 183 414 155 381 5.48e-65 214
MS.gene017692.t1 AT1G44110 40.221 271 155 6 182 448 177 444 6.62e-61 206
MS.gene017692.t1 AT1G80370 38.790 281 166 6 173 450 172 449 2.33e-59 202
MS.gene017692.t1 AT1G77390 42.045 264 144 7 182 440 161 420 4.55e-59 200
MS.gene017692.t1 AT1G76310 39.032 310 142 8 38 343 56 322 7.26e-59 197
MS.gene017692.t1 AT5G25380 38.351 279 165 6 182 456 156 431 4.18e-57 195
MS.gene017692.t1 AT5G25380 38.351 279 165 6 182 456 156 431 4.18e-57 195
MS.gene017692.t1 AT5G25380 38.351 279 165 6 182 456 162 437 5.33e-57 195
MS.gene017692.t1 AT5G25380 39.544 263 152 6 182 440 156 415 3.02e-56 192
MS.gene017692.t1 AT5G11300 39.427 279 162 6 182 456 155 430 4.73e-56 192
MS.gene017692.t1 AT5G43080 36.462 277 162 6 185 456 73 340 6.72e-55 187
MS.gene017692.t1 AT1G47210 38.129 278 163 7 185 456 88 362 1.30e-54 187
MS.gene017692.t1 AT5G43080 35.816 282 162 6 185 456 73 345 5.83e-54 184
MS.gene017692.t1 AT1G15570 36.242 298 183 6 164 456 151 446 7.74e-54 187
MS.gene017692.t1 AT1G47220 39.427 279 158 8 185 456 42 316 3.62e-53 181
MS.gene017692.t1 AT1G47230 39.256 242 144 3 219 458 117 357 1.17e-51 179
MS.gene017692.t1 AT1G20590 47.159 176 87 2 257 432 63 232 8.15e-51 173
MS.gene017692.t1 AT1G47230 39.095 243 144 4 219 458 117 358 6.88e-50 174
MS.gene017692.t1 AT5G11300 43.779 217 116 5 182 395 155 368 2.20e-49 174
MS.gene017692.t1 AT1G47210 42.453 106 56 4 185 286 88 192 4.08e-20 88.6
MS.gene017692.t1 AT1G14750 29.231 195 127 5 230 420 385 572 1.76e-15 79.3
MS.gene017692.t1 AT1G14750 29.744 195 126 5 230 420 385 572 1.81e-15 79.3
MS.gene017692.t1 AT1G14750 28.718 195 128 4 230 420 217 404 5.27e-15 77.0
MS.gene017692.t1 AT1G14750 28.718 195 127 5 230 420 217 403 3.02e-14 74.7

Find 110 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTGAGATAAAGGGTTTC+AGG 0.206490 7.1:-17430377 None:intergenic
ACTTTCTTCTGAACAGGTTT+AGG 0.221645 7.1:-17429744 None:intergenic
GGAAATGTTGTCACACTAAA+AGG 0.238632 7.1:+17429424 MS.gene017692:CDS
CGTAGACCACTTCTTGATAT+TGG 0.257214 7.1:+17429403 MS.gene017692:CDS
CTCCTTGTGACAGGGCGATT+TGG 0.266023 7.1:-17429460 None:intergenic
CTTTCTTCTGAACAGGTTTA+GGG 0.273791 7.1:-17429743 None:intergenic
CTATGTTGATTGTGAGATAA+AGG 0.290156 7.1:-17430385 None:intergenic
CTCTGGGTTGTTGTTGTTGT+TGG 0.304884 7.1:-17429003 None:intergenic
GAAATCTGTGCACAAGAAAA+AGG 0.325466 7.1:+17429830 MS.gene017692:CDS
TGATGCATTATGCTACATTA+AGG 0.329648 7.1:+17430729 MS.gene017692:CDS
GCAGTGACTTTCTTCTGAAC+AGG 0.349419 7.1:-17429750 None:intergenic
GCTGAGGCAGCAAGCATTGA+TGG 0.393892 7.1:-17430758 None:intergenic
GGTAGCAGAAGTTTCTTTGC+CGG 0.395605 7.1:-17430983 None:intergenic
CTCATCCTCTCATTTATCTC+AGG 0.404632 7.1:-17430302 None:intergenic
TCAATAACTTCCACAGGCTT+AGG 0.404728 7.1:-17429777 None:intergenic
CAACTGTTCTTCGGAGTAAC+CGG 0.407928 7.1:-17430846 None:intergenic
CCATCCTAGGAAAGCTTGAA+TGG 0.408581 7.1:+17430582 MS.gene017692:CDS
CAGAAGAAGAACGGTGCAGC+AGG 0.408866 7.1:+17429367 MS.gene017692:CDS
GCTCCTCCTGTTGTTGCTGA+TGG 0.409185 7.1:+17429687 MS.gene017692:CDS
TCAATGTCAACAATCTCCTT+TGG 0.409201 7.1:-17430062 None:intergenic
TATGTTGATTGTGAGATAAA+GGG 0.409760 7.1:-17430384 None:intergenic
CATCAAAGTATGAAGAAATC+TGG 0.422694 7.1:+17430483 MS.gene017692:CDS
AGCAGTTGCTGAAAACAATA+AGG 0.423523 7.1:+17429519 MS.gene017692:CDS
TGCTGTTGCCGCGCTTCCAC+CGG 0.426291 7.1:+17430964 MS.gene017692:CDS
AACTGCTGCTGCTTGTGCAT+TGG 0.426689 7.1:-17429503 None:intergenic
TTACTCCGAAGAACAGTTGA+TGG 0.428240 7.1:+17430850 MS.gene017692:CDS
TGAAGTAAGTTCTGAAGAAA+AGG 0.429447 7.1:+17429797 MS.gene017692:CDS
GTCAAGAAGGGAACTTCAAT+TGG 0.435390 7.1:+17430436 MS.gene017692:CDS
TCACAATCAACATAGTTGAT+AGG 0.445143 7.1:+17430393 MS.gene017692:CDS
TTTCACTCAGGTGCTGAGAA+TGG 0.447293 7.1:+17430896 MS.gene017692:CDS
TGTTATAGGTGATGCTGCCT+TGG 0.451586 7.1:+17429330 MS.gene017692:intron
CCATTCAAGCTTTCCTAGGA+TGG 0.453248 7.1:-17430582 None:intergenic
AGAAGGGAACTTCAATTGGT+TGG 0.459265 7.1:+17430440 MS.gene017692:CDS
CTGTTGTTTCCCTCCTCCCA+AGG 0.460174 7.1:-17429347 None:intergenic
TGTTGTTGTTGGTGAACAAT+GGG 0.462538 7.1:-17428992 None:intergenic
GATGGATTGTGCTAGGTTGT+TGG 0.467847 7.1:+17430868 MS.gene017692:CDS
CATTGAGCAAGACTCCTGTT+TGG 0.470579 7.1:+17430801 MS.gene017692:CDS
TTGTTGTTGTTGGTGAACAA+TGG 0.480167 7.1:-17428993 None:intergenic
GTTCCTGGTTCGTTTCATCA+AGG 0.481189 7.1:+17430631 MS.gene017692:CDS
AAGTCCATTCAAGCTTTCCT+AGG 0.481341 7.1:-17430586 None:intergenic
GGTGATGCTGCCTTGGGAGG+AGG 0.482861 7.1:+17429337 MS.gene017692:intron
AGGAATACTCATTGATTGGC+TGG 0.482890 7.1:+17430325 MS.gene017692:CDS
TTGAGTGTCTCATTCCAAAC+AGG 0.483773 7.1:-17430815 None:intergenic
CTGTCAACCTTGTGTCAAGA+AGG 0.491215 7.1:+17430423 MS.gene017692:CDS
TGAGAGGAATACTCATTGAT+TGG 0.498998 7.1:+17430321 MS.gene017692:CDS
CTTACTTCAATAACTTCCAC+AGG 0.506470 7.1:-17429783 None:intergenic
GAAGAAGAACGGTGCAGCAG+GGG 0.508581 7.1:+17429369 MS.gene017692:CDS
GCAACTCCATCAGCAACAAC+AGG 0.508824 7.1:-17429693 None:intergenic
ACAATCCATCAACTGTTCTT+CGG 0.510480 7.1:-17430855 None:intergenic
TCTGCTACCTGCTGCTGTGT+AGG 0.513893 7.1:+17430997 MS.gene017692:CDS
TCTGCAGTTCCTTCTGATCA+AGG 0.516928 7.1:+17430665 MS.gene017692:CDS
ACAACAGGAGGAGCAGGTCC+AGG 0.526077 7.1:-17429678 None:intergenic
TCAAGGGGATTTCGAGATGA+TGG 0.530227 7.1:+17430682 MS.gene017692:CDS
GTGATGCTGCCTTGGGAGGA+GGG 0.530719 7.1:+17429338 MS.gene017692:CDS
AAGAACGGTGCAGCAGGGGA+AGG 0.535783 7.1:+17429373 MS.gene017692:CDS
AAACGAACCAGGAACACAAA+AGG 0.537440 7.1:-17430623 None:intergenic
GTTATAGGTGATGCTGCCTT+GGG 0.538221 7.1:+17429331 MS.gene017692:intron
TCGAAATCCCCTTGATCAGA+AGG 0.543161 7.1:-17430674 None:intergenic
GAGAGAACCTACACAGCAGC+AGG 0.545039 7.1:-17431004 None:intergenic
CAATATCAAGAAGTGGTCTA+CGG 0.545242 7.1:-17429402 None:intergenic
TCAGCAACAACAGGAGGAGC+AGG 0.545915 7.1:-17429684 None:intergenic
AGTGGCTAGAAGAGTGGTGG+TGG 0.553511 7.1:+17429719 MS.gene017692:CDS
TTGACACAAGGTTGACAGCA+AGG 0.554809 7.1:-17430418 None:intergenic
ACGGTGCAGCAGGGGAAGGA+AGG 0.557061 7.1:+17429377 MS.gene017692:CDS
CTGCAGTTCCTTCTGATCAA+GGG 0.565046 7.1:+17430666 MS.gene017692:CDS
GCTTGTGTCAATGTGGCACC+TGG 0.568366 7.1:+17429660 MS.gene017692:CDS
TGCAGTTCCTTCTGATCAAG+GGG 0.571084 7.1:+17430667 MS.gene017692:CDS
AGCCAAATCGCCCTGTCACA+AGG 0.571983 7.1:+17429458 MS.gene017692:CDS
GAGATTGTTGACATTGATGC+TGG 0.574052 7.1:+17430068 MS.gene017692:CDS
TGCTGATGGAGTTGCAGCAG+TGG 0.577732 7.1:+17429701 MS.gene017692:CDS
AACAGTTGATGGATTGTGCT+AGG 0.577876 7.1:+17430861 MS.gene017692:CDS
TGCAGCAGTGGCTAGAAGAG+TGG 0.581805 7.1:+17429713 MS.gene017692:CDS
TTTCTTTGCCGGTGGAAGCG+CGG 0.582062 7.1:-17430972 None:intergenic
CACACAAAGTCATTAACCTC+AGG 0.586086 7.1:-17430509 None:intergenic
AAGCCGTCCACATGATTACA+TGG 0.589639 7.1:+17430271 MS.gene017692:CDS
TCATGAACAGATTCTCGTCA+TGG 0.593660 7.1:+17430553 MS.gene017692:CDS
ATAGGTGATGCTGCCTTGGG+AGG 0.594991 7.1:+17429334 MS.gene017692:intron
TGTCCTCACTGCTAGAAGCA+AGG 0.595514 7.1:+17429896 MS.gene017692:CDS
GAAGTTCCCTTCTTGACACA+AGG 0.595803 7.1:-17430430 None:intergenic
AAGTACTCTGATCCTCAGAA+AGG 0.596937 7.1:+17430941 MS.gene017692:CDS
GAGACACTCAAGATGCATAC+CGG 0.598392 7.1:+17430827 MS.gene017692:CDS
GTCATGGAGAAAACCATCCT+AGG 0.598998 7.1:+17430569 MS.gene017692:CDS
AGCAGAAGTTTCTTTGCCGG+TGG 0.599208 7.1:-17430980 None:intergenic
CAGCCTTGATGAAACGAACC+AGG 0.601116 7.1:-17430634 None:intergenic
CACTGCAAAACCTAAGCCTG+TGG 0.603311 7.1:+17429767 MS.gene017692:CDS
CCTTGCTGCATAGACTGCTG+AGG 0.603952 7.1:-17430774 None:intergenic
TGGAATCAGTGCCATGCTGA+TGG 0.608887 7.1:+17430460 MS.gene017692:CDS
GAGATAAATGAGAGGATGAG+AGG 0.614173 7.1:+17430305 MS.gene017692:CDS
TGCGAGTCCATGTAATCATG+TGG 0.618416 7.1:-17430278 None:intergenic
ACCAGGAACACAAAAGGTGT+CGG 0.622367 7.1:-17430617 None:intergenic
TTTCTTCTGAACAGGTTTAG+GGG 0.626802 7.1:-17429742 None:intergenic
AGAAGAAGAACGGTGCAGCA+GGG 0.627002 7.1:+17429368 MS.gene017692:CDS
AGTCCATGTAATCATGTGGA+CGG 0.628216 7.1:-17430274 None:intergenic
ATACTTTGATGCCATCAGCA+TGG 0.630020 7.1:-17430471 None:intergenic
ACAAAGTCATTAACCTCAGG+TGG 0.630280 7.1:-17430506 None:intergenic
ACATTTCCAATATCAAGAAG+TGG 0.631314 7.1:-17429409 None:intergenic
CGCAACCTGAGATAAATGAG+AGG 0.636305 7.1:+17430297 MS.gene017692:CDS
TGTCAACCTTGTGTCAAGAA+GGG 0.639776 7.1:+17430424 MS.gene017692:CDS
GGGAAACAACAGAAGAAGAA+CGG 0.643525 7.1:+17429358 MS.gene017692:CDS
GCGGCAACAGCACCTTTCTG+AGG 0.644637 7.1:-17430953 None:intergenic
ACTCCATCAGCAACAACAGG+AGG 0.651848 7.1:-17429690 None:intergenic
GACTGTAAGCTCTATCTGAG+AGG 0.659855 7.1:-17430532 None:intergenic
CCTCAGCAGTCTATGCAGCA+AGG 0.660855 7.1:+17430774 MS.gene017692:CDS
TGCTGAGAATGGAAAGCTGA+AGG 0.663287 7.1:+17430907 MS.gene017692:CDS
TGAAGAAATCTGGCCACCTG+AGG 0.663492 7.1:+17430493 MS.gene017692:CDS
TGGTTTGACTAACAAACCAA+AGG 0.666669 7.1:+17430046 MS.gene017692:CDS
GAAACAAGCTTGTGTCAATG+TGG 0.703443 7.1:+17429653 MS.gene017692:intron
AGCAGTGGCTAGAAGAGTGG+TGG 0.705939 7.1:+17429716 MS.gene017692:CDS
CAAGTTCTACAAGATAGTTG+AGG 0.706527 7.1:+17430139 MS.gene017692:CDS
AAACCTTGCTTCTAGCAGTG+AGG 0.715110 7.1:-17429899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTCGATTTTTTA+GGG + chr7.1:17429213-17429232 MS.gene017692:intron 15.0%
!!! TTAAAAAGTTTCGATTTTTT+AGG + chr7.1:17429212-17429231 MS.gene017692:intron 15.0%
!!! ACTTTTTAAGATTTATCATC+TGG - chr7.1:17429201-17429220 None:intergenic 20.0%
!!! CTTTTTAAGATTTATCATCT+GGG - chr7.1:17429200-17429219 None:intergenic 20.0%
!!! TTTATGGTTTTATTTATCCT+GGG + chr7.1:17429057-17429076 MS.gene017692:intron 20.0%
! ACTTTGAGTAAAATAGTTTC+TGG + chr7.1:17429106-17429125 MS.gene017692:intron 25.0%
! CTTTGAGTAAAATAGTTTCT+GGG + chr7.1:17429107-17429126 MS.gene017692:intron 25.0%
! TTGCATCAAATCTAGTAAAA+GGG + chr7.1:17429238-17429257 MS.gene017692:intron 25.0%
! TTTGCATCAAATCTAGTAAA+AGG + chr7.1:17429237-17429256 MS.gene017692:intron 25.0%
!! ATTCTCTTTTACATGTTCTT+TGG + chr7.1:17429983-17430002 MS.gene017692:intron 25.0%
!! TATGTTGATTGTGAGATAAA+GGG - chr7.1:17430387-17430406 None:intergenic 25.0%
!!! CTTCAATCATTGATTCTTTA+TGG + chr7.1:17429041-17429060 MS.gene017692:intron 25.0%
!!! CTTTATGGTTTTATTTATCC+TGG + chr7.1:17429056-17429075 MS.gene017692:intron 25.0%
!!! TCTTTTTTGGATTTTGTGTT+TGG + chr7.1:17429267-17429286 MS.gene017692:intron 25.0%
!!! TGATGATTATTTTCTGAGAT+TGG + chr7.1:17429603-17429622 MS.gene017692:intron 25.0%
ACATTTCCAATATCAAGAAG+TGG - chr7.1:17429412-17429431 None:intergenic 30.0%
ATTGAAAGATCTTGCAAATC+TGG + chr7.1:17429160-17429179 MS.gene017692:intron 30.0%
CACAAACAAACATCAAAAAC+AGG - chr7.1:17429307-17429326 None:intergenic 30.0%
CATCAAAGTATGAAGAAATC+TGG + chr7.1:17430483-17430502 MS.gene017692:CDS 30.0%
GTTTGTTTGTGCAATGTTAT+AGG + chr7.1:17429316-17429335 MS.gene017692:intron 30.0%
TCACAATCAACATAGTTGAT+AGG + chr7.1:17430393-17430412 MS.gene017692:CDS 30.0%
TGATGCATTATGCTACATTA+AGG + chr7.1:17430729-17430748 MS.gene017692:CDS 30.0%
TTGAAAGATCTTGCAAATCT+GGG + chr7.1:17429161-17429180 MS.gene017692:intron 30.0%
! CTATGTTGATTGTGAGATAA+AGG - chr7.1:17430388-17430407 None:intergenic 30.0%
! TGTTCTTTTCCTGTTCTTTT+AGG + chr7.1:17430016-17430035 MS.gene017692:intron 30.0%
!! TGAAGTAAGTTCTGAAGAAA+AGG + chr7.1:17429797-17429816 MS.gene017692:CDS 30.0%
!!! AAAAGGGTCTTGTTCTTTTT+TGG + chr7.1:17429254-17429273 MS.gene017692:intron 30.0%
ACAATCCATCAACTGTTCTT+CGG - chr7.1:17430858-17430877 None:intergenic 35.0%
ACTTTCTTCTGAACAGGTTT+AGG - chr7.1:17429747-17429766 None:intergenic 35.0%
AGAAAACACAAACAAACCTC+TGG - chr7.1:17429023-17429042 None:intergenic 35.0%
AGAACAAAAACATTGAACCC+AGG - chr7.1:17429077-17429096 None:intergenic 35.0%
AGCAGTTGCTGAAAACAATA+AGG + chr7.1:17429519-17429538 MS.gene017692:CDS 35.0%
ATTGTGAGATAAAGGGTTTC+AGG - chr7.1:17430380-17430399 None:intergenic 35.0%
CAAGTTCTACAAGATAGTTG+AGG + chr7.1:17430139-17430158 MS.gene017692:CDS 35.0%
CAATATCAAGAAGTGGTCTA+CGG - chr7.1:17429405-17429424 None:intergenic 35.0%
CTTACTTCAATAACTTCCAC+AGG - chr7.1:17429786-17429805 None:intergenic 35.0%
CTTTCTTCTGAACAGGTTTA+GGG - chr7.1:17429746-17429765 None:intergenic 35.0%
GAAAACACAAACAAACCTCT+GGG - chr7.1:17429022-17429041 None:intergenic 35.0%
GAAATCTGTGCACAAGAAAA+AGG + chr7.1:17429830-17429849 MS.gene017692:CDS 35.0%
GGAAATGTTGTCACACTAAA+AGG + chr7.1:17429424-17429443 MS.gene017692:CDS 35.0%
TCAATGTCAACAATCTCCTT+TGG - chr7.1:17430065-17430084 None:intergenic 35.0%
TGAGAGGAATACTCATTGAT+TGG + chr7.1:17430321-17430340 MS.gene017692:CDS 35.0%
TGGTTTGACTAACAAACCAA+AGG + chr7.1:17430046-17430065 MS.gene017692:CDS 35.0%
TTTCTTCTGAACAGGTTTAG+GGG - chr7.1:17429745-17429764 None:intergenic 35.0%
! GAGTAAAATAGTTTCTGGGT+TGG + chr7.1:17429111-17429130 MS.gene017692:intron 35.0%
! TGTTGTTGTTGGTGAACAAT+GGG - chr7.1:17428995-17429014 None:intergenic 35.0%
! TTGTTGTTGTTGGTGAACAA+TGG - chr7.1:17428996-17429015 None:intergenic 35.0%
AAACGAACCAGGAACACAAA+AGG - chr7.1:17430626-17430645 None:intergenic 40.0%
AAGTACTCTGATCCTCAGAA+AGG + chr7.1:17430941-17430960 MS.gene017692:CDS 40.0%
AAGTCCATTCAAGCTTTCCT+AGG - chr7.1:17430589-17430608 None:intergenic 40.0%
ACAAAGTCATTAACCTCAGG+TGG - chr7.1:17430509-17430528 None:intergenic 40.0%
AGAAGGGAACTTCAATTGGT+TGG + chr7.1:17430440-17430459 MS.gene017692:CDS 40.0%
AGTCCATGTAATCATGTGGA+CGG - chr7.1:17430277-17430296 None:intergenic 40.0%
ATACTTTGATGCCATCAGCA+TGG - chr7.1:17430474-17430493 None:intergenic 40.0%
CACAAAAACTCCTTGTGACA+GGG - chr7.1:17429471-17429490 None:intergenic 40.0%
CACACAAAGTCATTAACCTC+AGG - chr7.1:17430512-17430531 None:intergenic 40.0%
CGTAGACCACTTCTTGATAT+TGG + chr7.1:17429403-17429422 MS.gene017692:CDS 40.0%
CTCATCCTCTCATTTATCTC+AGG - chr7.1:17430305-17430324 None:intergenic 40.0%
GAAACAAGCTTGTGTCAATG+TGG + chr7.1:17429653-17429672 MS.gene017692:intron 40.0%
GAGATAAATGAGAGGATGAG+AGG + chr7.1:17430305-17430324 MS.gene017692:CDS 40.0%
GAGATTGTTGACATTGATGC+TGG + chr7.1:17430068-17430087 MS.gene017692:CDS 40.0%
GGGAAACAACAGAAGAAGAA+CGG + chr7.1:17429358-17429377 MS.gene017692:CDS 40.0%
GTCAAGAAGGGAACTTCAAT+TGG + chr7.1:17430436-17430455 MS.gene017692:CDS 40.0%
TCAATAACTTCCACAGGCTT+AGG - chr7.1:17429780-17429799 None:intergenic 40.0%
TCATGAACAGATTCTCGTCA+TGG + chr7.1:17430553-17430572 MS.gene017692:CDS 40.0%
TGTCAACCTTGTGTCAAGAA+GGG + chr7.1:17430424-17430443 MS.gene017692:CDS 40.0%
TTACTCCGAAGAACAGTTGA+TGG + chr7.1:17430850-17430869 MS.gene017692:CDS 40.0%
TTGAGTGTCTCATTCCAAAC+AGG - chr7.1:17430818-17430837 None:intergenic 40.0%
! AGGAATACTCATTGATTGGC+TGG + chr7.1:17430325-17430344 MS.gene017692:CDS 40.0%
! AGTGCGTGATGTTTTCTTCT+TGG - chr7.1:17429868-17429887 None:intergenic 40.0%
! GCTCATTTTCTCTCTGAGTT+GGG + chr7.1:17430704-17430723 MS.gene017692:CDS 40.0%
!! AACAGTTGATGGATTGTGCT+AGG + chr7.1:17430861-17430880 MS.gene017692:CDS 40.0%
!! CTAGAAGCAAGGTTTGTTGT+TGG + chr7.1:17429907-17429926 MS.gene017692:intron 40.0%
!! TTGTTGGTGAGTTTTCACTC+AGG + chr7.1:17430884-17430903 MS.gene017692:CDS 40.0%
AAACCTTGCTTCTAGCAGTG+AGG - chr7.1:17429902-17429921 None:intergenic 45.0%
AAGCCGTCCACATGATTACA+TGG + chr7.1:17430271-17430290 MS.gene017692:CDS 45.0%
CAACAACAACAACAACCCAG+AGG + chr7.1:17429004-17429023 MS.gene017692:CDS 45.0%
CAACTGTTCTTCGGAGTAAC+CGG - chr7.1:17430849-17430868 None:intergenic 45.0%
CACATGCAGCCTAAAAGAAC+AGG - chr7.1:17430028-17430047 None:intergenic 45.0%
CATTGAGCAAGACTCCTGTT+TGG + chr7.1:17430801-17430820 MS.gene017692:CDS 45.0%
CCATCCTAGGAAAGCTTGAA+TGG + chr7.1:17430582-17430601 MS.gene017692:CDS 45.0%
CCATTCAAGCTTTCCTAGGA+TGG - chr7.1:17430585-17430604 None:intergenic 45.0%
CGCAACCTGAGATAAATGAG+AGG + chr7.1:17430297-17430316 MS.gene017692:CDS 45.0%
CTGCAGTTCCTTCTGATCAA+GGG + chr7.1:17430666-17430685 MS.gene017692:CDS 45.0%
CTGTCAACCTTGTGTCAAGA+AGG + chr7.1:17430423-17430442 MS.gene017692:CDS 45.0%
GAAGTTCCCTTCTTGACACA+AGG - chr7.1:17430433-17430452 None:intergenic 45.0%
GACTGTAAGCTCTATCTGAG+AGG - chr7.1:17430535-17430554 None:intergenic 45.0%
GAGACACTCAAGATGCATAC+CGG + chr7.1:17430827-17430846 MS.gene017692:CDS 45.0%
GCACAAAAACTCCTTGTGAC+AGG - chr7.1:17429472-17429491 None:intergenic 45.0%
GCAGTGACTTTCTTCTGAAC+AGG - chr7.1:17429753-17429772 None:intergenic 45.0%
GGTAGCAGAAGTTTCTTTGC+CGG - chr7.1:17430986-17431005 None:intergenic 45.0%
GTCATGGAGAAAACCATCCT+AGG + chr7.1:17430569-17430588 MS.gene017692:CDS 45.0%
GTTATAGGTGATGCTGCCTT+GGG + chr7.1:17429331-17429350 MS.gene017692:intron 45.0%
TCAAGGGGATTTCGAGATGA+TGG + chr7.1:17430682-17430701 MS.gene017692:CDS 45.0%
TCGAAATCCCCTTGATCAGA+AGG - chr7.1:17430677-17430696 None:intergenic 45.0%
TCTGCAGTTCCTTCTGATCA+AGG + chr7.1:17430665-17430684 MS.gene017692:CDS 45.0%
TGCAGTTCCTTCTGATCAAG+GGG + chr7.1:17430667-17430686 MS.gene017692:CDS 45.0%
TGCGAGTCCATGTAATCATG+TGG - chr7.1:17430281-17430300 None:intergenic 45.0%
TGCTGAGAATGGAAAGCTGA+AGG + chr7.1:17430907-17430926 MS.gene017692:CDS 45.0%
TGTTATAGGTGATGCTGCCT+TGG + chr7.1:17429330-17429349 MS.gene017692:intron 45.0%
TTGACACAAGGTTGACAGCA+AGG - chr7.1:17430421-17430440 None:intergenic 45.0%
! ACCAGGAACACAAAAGGTGT+CGG - chr7.1:17430620-17430639 None:intergenic 45.0%
! CTCTGGGTTGTTGTTGTTGT+TGG - chr7.1:17429006-17429025 None:intergenic 45.0%
! CTGTTCTTTTAGGCTGCATG+TGG + chr7.1:17430026-17430045 MS.gene017692:intron 45.0%
! GGCTCATTTTCTCTCTGAGT+TGG + chr7.1:17430703-17430722 MS.gene017692:CDS 45.0%
! GTTCCTGGTTCGTTTCATCA+AGG + chr7.1:17430631-17430650 MS.gene017692:CDS 45.0%
!! GATGGATTGTGCTAGGTTGT+TGG + chr7.1:17430868-17430887 MS.gene017692:CDS 45.0%
!! TTTCACTCAGGTGCTGAGAA+TGG + chr7.1:17430896-17430915 MS.gene017692:CDS 45.0%
ACTCCATCAGCAACAACAGG+AGG - chr7.1:17429693-17429712 None:intergenic 50.0%
AGAAGAAGAACGGTGCAGCA+GGG + chr7.1:17429368-17429387 MS.gene017692:CDS 50.0%
AGCAGAAGTTTCTTTGCCGG+TGG - chr7.1:17430983-17431002 None:intergenic 50.0%
CACTGCAAAACCTAAGCCTG+TGG + chr7.1:17429767-17429786 MS.gene017692:CDS 50.0%
CAGCCTTGATGAAACGAACC+AGG - chr7.1:17430637-17430656 None:intergenic 50.0%
GCAACTCCATCAGCAACAAC+AGG - chr7.1:17429696-17429715 None:intergenic 50.0%
TGAAGAAATCTGGCCACCTG+AGG + chr7.1:17430493-17430512 MS.gene017692:CDS 50.0%
TGGAATCAGTGCCATGCTGA+TGG + chr7.1:17430460-17430479 MS.gene017692:CDS 50.0%
TGTCCTCACTGCTAGAAGCA+AGG + chr7.1:17429896-17429915 MS.gene017692:CDS 50.0%
! AACTGCTGCTGCTTGTGCAT+TGG - chr7.1:17429506-17429525 None:intergenic 50.0%
AGCAGTGGCTAGAAGAGTGG+TGG + chr7.1:17429716-17429735 MS.gene017692:CDS 55.0%
AGCCAAATCGCCCTGTCACA+AGG + chr7.1:17429458-17429477 MS.gene017692:CDS 55.0%
AGTGGCTAGAAGAGTGGTGG+TGG + chr7.1:17429719-17429738 MS.gene017692:CDS 55.0%
ATAGGTGATGCTGCCTTGGG+AGG + chr7.1:17429334-17429353 MS.gene017692:intron 55.0%
CAGAAGAAGAACGGTGCAGC+AGG + chr7.1:17429367-17429386 MS.gene017692:CDS 55.0%
CCTCAGCAGTCTATGCAGCA+AGG + chr7.1:17430774-17430793 MS.gene017692:CDS 55.0%
CCTTGCTGCATAGACTGCTG+AGG - chr7.1:17430777-17430796 None:intergenic 55.0%
CTCCTTGTGACAGGGCGATT+TGG - chr7.1:17429463-17429482 None:intergenic 55.0%
GAAGAAGAACGGTGCAGCAG+GGG + chr7.1:17429369-17429388 MS.gene017692:CDS 55.0%
GCTCCTCCTGTTGTTGCTGA+TGG + chr7.1:17429687-17429706 MS.gene017692:CDS 55.0%
GCTTGTGTCAATGTGGCACC+TGG + chr7.1:17429660-17429679 MS.gene017692:CDS 55.0%
TCAGCAACAACAGGAGGAGC+AGG - chr7.1:17429687-17429706 None:intergenic 55.0%
TGCAGCAGTGGCTAGAAGAG+TGG + chr7.1:17429713-17429732 MS.gene017692:CDS 55.0%
TGCTGATGGAGTTGCAGCAG+TGG + chr7.1:17429701-17429720 MS.gene017692:CDS 55.0%
TTTCTTTGCCGGTGGAAGCG+CGG - chr7.1:17430975-17430994 None:intergenic 55.0%
! GCCGACACCTTTTGTGTTCC+TGG + chr7.1:17430616-17430635 MS.gene017692:CDS 55.0%
!! CTGTTGTTTCCCTCCTCCCA+AGG - chr7.1:17429350-17429369 None:intergenic 55.0%
!! GCTGAGGCAGCAAGCATTGA+TGG - chr7.1:17430761-17430780 None:intergenic 55.0%
AAGAACGGTGCAGCAGGGGA+AGG + chr7.1:17429373-17429392 MS.gene017692:CDS 60.0%
ACAACAGGAGGAGCAGGTCC+AGG - chr7.1:17429681-17429700 None:intergenic 60.0%
GCGGCAACAGCACCTTTCTG+AGG - chr7.1:17430956-17430975 None:intergenic 60.0%
GTGATGCTGCCTTGGGAGGA+GGG + chr7.1:17429338-17429357 MS.gene017692:CDS 60.0%
ACGGTGCAGCAGGGGAAGGA+AGG + chr7.1:17429377-17429396 MS.gene017692:CDS 65.0%
GGTGATGCTGCCTTGGGAGG+AGG + chr7.1:17429337-17429356 MS.gene017692:intron 65.0%
TGCTGTTGCCGCGCTTCCAC+CGG + chr7.1:17430964-17430983 MS.gene017692:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 17428980 17431018 17428980 ID=MS.gene017692
chr7.1 mRNA 17428980 17431018 17428980 ID=MS.gene017692.t1;Parent=MS.gene017692
chr7.1 exon 17428980 17429025 17428980 ID=MS.gene017692.t1.exon1;Parent=MS.gene017692.t1
chr7.1 CDS 17428980 17429025 17428980 ID=cds.MS.gene017692.t1;Parent=MS.gene017692.t1
chr7.1 exon 17429338 17429540 17429338 ID=MS.gene017692.t1.exon2;Parent=MS.gene017692.t1
chr7.1 CDS 17429338 17429540 17429338 ID=cds.MS.gene017692.t1;Parent=MS.gene017692.t1
chr7.1 exon 17429654 17429917 17429654 ID=MS.gene017692.t1.exon3;Parent=MS.gene017692.t1
chr7.1 CDS 17429654 17429917 17429654 ID=cds.MS.gene017692.t1;Parent=MS.gene017692.t1
chr7.1 exon 17430038 17430160 17430038 ID=MS.gene017692.t1.exon4;Parent=MS.gene017692.t1
chr7.1 CDS 17430038 17430160 17430038 ID=cds.MS.gene017692.t1;Parent=MS.gene017692.t1
chr7.1 exon 17430266 17431018 17430266 ID=MS.gene017692.t1.exon5;Parent=MS.gene017692.t1
chr7.1 CDS 17430266 17431018 17430266 ID=cds.MS.gene017692.t1;Parent=MS.gene017692.t1
Gene Sequence

>MS.gene017692

ATGGCTTCAAGACCCATTGTTCACCAACAACAACAACAACCCAGAGGTTTGTTTGTGTTTTCTTCAATCATTGATTCTTTATGGTTTTATTTATCCTGGGTTCAATGTTTTTGTTCTAAGATTGAAACTTTGAGTAAAATAGTTTCTGGGTTGGTTTCTTTTTCATCTATCTCTTCACTGATTGAAAGATCTTGCAAATCTGGGTTTTTGAAAGAAGCCCAGATGATAAATCTTAAAAAGTTTCGATTTTTTAGGGTTTTGCATCAAATCTAGTAAAAGGGTCTTGTTCTTTTTTGGATTTTGTGTTTGGATCGAAATCTAGAACCTGTTTTTGATGTTTGTTTGTGCAATGTTATAGGTGATGCTGCCTTGGGAGGAGGGAAACAACAGAAGAAGAACGGTGCAGCAGGGGAAGGAAGGAACCGTAGACCACTTCTTGATATTGGAAATGTTGTCACACTAAAAGGTGTCGAAGTTAAGCCAAATCGCCCTGTCACAAGGAGTTTTTGTGCACAATTACTTGCCAATGCACAAGCAGCAGCAGTTGCTGAAAACAATAAGGTTAGTGATGATTATTTGATTAATCTTTCTTTTCTTTCATTATTTAATTTAATGTTTCATTGTGATGATTATTTTCTGAGATTGGTTTTTTTGTGTTTGATTTGAAATTGAAGAAACAAGCTTGTGTCAATGTGGCACCTGGACCTGCTCCTCCTGTTGTTGCTGATGGAGTTGCAGCAGTGGCTAGAAGAGTGGTGGTGGCCCCTAAACCTGTTCAGAAGAAAGTCACTGCAAAACCTAAGCCTGTGGAAGTTATTGAAGTAAGTTCTGAAGAAAAGGACAATGAAGAGAAATCTGTGCACAAGAAAAAGGAAGAAGTTCATTCCAAGAAGAAAACATCACGCACTCTTTCTTCTGTCCTCACTGCTAGAAGCAAGGTTTGTTGTTGGTTATGTTGTTAAGAATTAATCAAACAAAGAAGCATGTTATGTTGTTAGATTGAATTCTCTTTTACATGTTCTTTGGTTTGTTTACATGTTCTTTTCCTGTTCTTTTAGGCTGCATGTGGTTTGACTAACAAACCAAAGGAGATTGTTGACATTGATGCTGGTGATGCTAACAATGAGTTAGCTGCTGTTGAATATCTTGAAGACATATACAAGTTCTACAAGATAGTTGAGGTAACAATAACAAACATGACTTTAATTTACTTTTCATTCTATATGTTTTTGTTTTGTGTCTGATGTATTGTTCTTTATTGCTTGTGTATGTGTTGAATGATTCAGAATGAAAGCCGTCCACATGATTACATGGACTCGCAACCTGAGATAAATGAGAGGATGAGAGGAATACTCATTGATTGGCTGGTAGATGTTCACTCAAAATTCGAACTTTCACCTGAAACCCTTTATCTCACAATCAACATAGTTGATAGGTTCCTTGCTGTCAACCTTGTGTCAAGAAGGGAACTTCAATTGGTTGGAATCAGTGCCATGCTGATGGCATCAAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTGTGCCTCTCAGATAGAGCTTACAGTCATGAACAGATTCTCGTCATGGAGAAAACCATCCTAGGAAAGCTTGAATGGACTTTGACTGTGCCGACACCTTTTGTGTTCCTGGTTCGTTTCATCAAGGCTGCATCAGTATCTGCAGTTCCTTCTGATCAAGGGGATTTCGAGATGATGGCTCATTTTCTCTCTGAGTTGGGAATGATGCATTATGCTACATTAAGGTATTGTCCATCAATGCTTGCTGCCTCAGCAGTCTATGCAGCAAGGAGCACATTGAGCAAGACTCCTGTTTGGAATGAGACACTCAAGATGCATACCGGTTACTCCGAAGAACAGTTGATGGATTGTGCTAGGTTGTTGGTGAGTTTTCACTCAGGTGCTGAGAATGGAAAGCTGAAGGTTGTGTATAAGAAGTACTCTGATCCTCAGAAAGGTGCTGTTGCCGCGCTTCCACCGGCAAAGAAACTTCTGCTACCTGCTGCTGTGTAG
Protein sequence

>MS.gene017692.t1

MASRPIVHQQQQQPRGDAALGGGKQQKKNGAAGEGRNRRPLLDIGNVVTLKGVEVKPNRPVTRSFCAQLLANAQAAAVAENNKKQACVNVAPGPAPPVVADGVAAVARRVVVAPKPVQKKVTAKPKPVEVIEVSSEEKDNEEKSVHKKKEEVHSKKKTSRTLSSVLTARSKAACGLTNKPKEIVDIDAGDANNELAAVEYLEDIYKFYKIVENESRPHDYMDSQPEINERMRGILIDWLVDVHSKFELSPETLYLTINIVDRFLAVNLVSRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYSHEQILVMEKTILGKLEWTLTVPTPFVFLVRFIKAASVSAVPSDQGDFEMMAHFLSELGMMHYATLRYCPSMLAASAVYAARSTLSKTPVWNETLKMHTGYSEEQLMDCARLLVSFHSGAENGKLKVVYKKYSDPQKGAVAALPPAKKLLLPAAV