AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017693

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017693.t1 MTR_7g089080 88.720 461 7 3 1 417 1 460 0.0 811
MS.gene017693.t1 MTR_5g088980 48.578 457 150 14 1 412 1 417 5.63e-126 371
MS.gene017693.t1 MTR_8g074000 42.435 271 115 4 183 413 159 428 4.81e-67 219
MS.gene017693.t1 MTR_5g023790 33.412 425 196 10 34 413 42 424 1.25e-64 213
MS.gene017693.t1 MTR_5g023790 41.850 227 93 3 183 370 155 381 1.49e-53 183
MS.gene017693.t1 MTR_1g011470 35.662 272 128 6 183 408 145 415 1.49e-41 152
MS.gene017693.t1 MTR_3g061680 34.363 259 122 4 193 406 15 270 1.90e-41 148
MS.gene017693.t1 MTR_3g060770 36.475 244 105 6 199 396 31 270 3.51e-41 147
MS.gene017693.t1 MTR_5g023790 46.452 155 66 2 183 320 155 309 3.75e-40 147
MS.gene017693.t1 MTR_3g088415 34.286 280 133 8 179 409 220 497 6.92e-40 149
MS.gene017693.t1 MTR_3g107970 34.066 273 131 7 183 408 197 467 1.07e-38 145
MS.gene017693.t1 MTR_3g060820 33.465 254 119 6 199 406 21 270 9.66e-38 138
MS.gene017693.t1 MTR_1g018680 34.375 256 120 6 200 407 91 346 2.06e-37 139
MS.gene017693.t1 MTR_3g060400 32.411 253 123 5 199 406 27 276 1.09e-36 135
MS.gene017693.t1 MTR_3g460990 32.411 253 123 5 199 406 27 276 1.09e-36 135
MS.gene017693.t1 MTR_3g088405 31.481 270 134 9 176 396 220 487 2.86e-35 136
MS.gene017693.t1 MTR_3g088415 36.279 215 91 5 179 348 220 433 1.04e-33 131
MS.gene017693.t1 MTR_2g102550 33.333 288 141 8 168 406 134 419 1.21e-33 130
MS.gene017693.t1 MTR_6g045270 35.686 255 121 9 199 413 45 296 2.69e-33 127
MS.gene017693.t1 MTR_3g102520 32.184 261 129 6 200 412 91 351 3.41e-33 128
MS.gene017693.t1 MTR_3g060410 33.186 226 106 3 226 406 130 355 9.59e-33 127
MS.gene017693.t1 MTR_3g102510 31.274 259 132 5 200 412 74 332 1.01e-32 126
MS.gene017693.t1 MTR_2g102520 31.802 283 144 7 178 412 194 475 1.75e-32 128
MS.gene017693.t1 MTR_3g088415 41.875 160 74 4 179 320 220 378 4.54e-30 120
MS.gene017693.t1 MTR_3g102560 33.740 246 120 6 205 407 69 314 2.14e-29 117
MS.gene017693.t1 MTR_5g044040 71.429 77 6 1 253 313 7 83 1.69e-27 106
MS.gene017693.t1 MTR_5g044040 60.938 64 17 1 363 418 60 123 4.55e-17 77.4
MS.gene017693.t1 MTR_3g102530 29.818 275 136 6 181 409 78 341 7.21e-27 110
MS.gene017693.t1 MTR_3g102540 30.522 249 129 6 204 408 13 261 5.99e-25 103
MS.gene017693.t1 MTR_5g011900 34.737 190 105 2 150 320 18 207 5.55e-22 94.7
MS.gene017693.t1 MTR_2g005960 36.364 132 68 3 176 291 97 228 2.00e-19 87.0
MS.gene017693.t1 MTR_5g015670 32.787 122 59 5 228 332 101 216 3.17e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017693.t1 AT5G06150 50.664 452 154 9 12 417 9 437 3.44e-136 398
MS.gene017693.t1 AT3G11520 51.648 455 139 13 1 416 1 413 7.61e-131 383
MS.gene017693.t1 AT4G37490 49.247 465 140 15 1 413 2 422 7.51e-119 353
MS.gene017693.t1 AT3G11520 51.834 409 116 13 1 370 1 367 2.79e-115 342
MS.gene017693.t1 AT2G26760 49.432 352 128 7 98 407 34 377 1.43e-101 307
MS.gene017693.t1 AT5G06150 51.335 337 117 8 12 324 9 322 2.74e-94 287
MS.gene017693.t1 AT1G76310 36.516 419 181 10 38 414 56 431 1.24e-73 237
MS.gene017693.t1 AT1G20610 35.698 451 192 10 21 413 19 429 3.02e-73 236
MS.gene017693.t1 AT1G34460 45.706 326 110 12 12 324 121 392 2.12e-68 225
MS.gene017693.t1 AT1G34460 45.706 326 110 12 12 324 121 392 3.18e-68 224
MS.gene017693.t1 AT1G34460 45.706 326 110 12 12 324 121 392 3.18e-68 224
MS.gene017693.t1 AT1G34460 45.706 326 110 12 12 324 121 392 3.18e-68 224
MS.gene017693.t1 AT1G34460 45.706 326 110 12 12 324 121 392 3.18e-68 224
MS.gene017693.t1 AT1G34460 45.092 326 109 11 12 324 121 389 3.68e-68 224
MS.gene017693.t1 AT1G34460 45.092 326 109 11 12 324 121 389 3.68e-68 224
MS.gene017693.t1 AT1G34460 45.062 324 115 10 12 324 121 392 7.87e-68 224
MS.gene017693.t1 AT1G76310 34.228 447 181 11 38 414 56 459 9.84e-68 222
MS.gene017693.t1 AT1G34460 44.880 332 116 12 6 324 101 378 1.76e-67 222
MS.gene017693.t1 AT1G16330 38.079 302 142 6 155 414 350 648 1.02e-62 213
MS.gene017693.t1 AT1G76310 36.000 375 155 10 38 370 56 387 2.99e-61 203
MS.gene017693.t1 AT2G17620 43.333 270 114 3 183 413 154 423 3.98e-61 204
MS.gene017693.t1 AT4G35620 41.328 271 120 3 183 414 155 425 3.64e-57 194
MS.gene017693.t1 AT4G35620 42.731 227 91 3 183 370 155 381 1.80e-47 167
MS.gene017693.t1 AT1G76310 36.634 303 129 9 38 320 56 315 3.87e-47 165
MS.gene017693.t1 AT1G44110 35.316 269 127 6 182 404 177 444 2.92e-44 160
MS.gene017693.t1 AT1G77390 36.641 262 117 7 182 396 161 420 8.83e-43 156
MS.gene017693.t1 AT5G25380 33.935 277 136 6 182 412 156 431 3.04e-41 151
MS.gene017693.t1 AT5G25380 33.935 277 136 6 182 412 156 431 3.04e-41 151
MS.gene017693.t1 AT5G25380 33.935 277 136 6 182 412 162 437 3.52e-41 151
MS.gene017693.t1 AT5G11300 34.657 277 134 7 182 412 155 430 2.02e-40 149
MS.gene017693.t1 AT5G25380 34.866 261 123 6 182 396 156 415 2.83e-40 149
MS.gene017693.t1 AT1G80370 33.571 280 138 7 173 406 172 449 5.87e-39 146
MS.gene017693.t1 AT1G47210 32.971 276 136 7 185 412 88 362 2.68e-38 142
MS.gene017693.t1 AT1G47220 34.296 277 131 8 185 412 42 316 7.97e-38 140
MS.gene017693.t1 AT5G43080 31.970 269 141 6 185 412 73 340 2.14e-37 139
MS.gene017693.t1 AT5G43080 31.387 274 141 6 185 412 73 345 1.15e-36 137
MS.gene017693.t1 AT1G47230 34.728 239 111 4 219 412 117 355 2.70e-35 134
MS.gene017693.t1 AT1G15570 31.650 297 154 7 164 412 151 446 3.20e-35 135
MS.gene017693.t1 AT5G11300 37.674 215 88 6 182 351 155 368 4.23e-34 132
MS.gene017693.t1 AT1G47230 34.583 240 111 5 219 412 117 356 1.14e-33 129
MS.gene017693.t1 AT1G20590 39.412 170 65 2 257 388 63 232 1.99e-33 126
MS.gene017693.t1 AT1G47210 42.453 106 56 4 185 286 88 192 3.00e-20 88.6

Find 101 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTGAGATAAAGGGTTTC+AGG 0.206490 7.1:-17419064 None:intergenic
ACTTTCTTCTGAACAGGTTT+AGG 0.221645 7.1:-17418431 None:intergenic
GGAAATGTTGTCACACTAAA+AGG 0.238632 7.1:+17418111 MS.gene017693:CDS
CGTAGACCACTTCTTGATAT+TGG 0.257214 7.1:+17418090 MS.gene017693:CDS
CTCCTTGTGACAGGGCGATT+TGG 0.266023 7.1:-17418147 None:intergenic
CTTTCTTCTGAACAGGTTTA+GGG 0.273791 7.1:-17418430 None:intergenic
CTATGTTGATTGTGAGATAA+AGG 0.290156 7.1:-17419072 None:intergenic
CTCTGGGTTGTTGTTGTTGT+TGG 0.304884 7.1:-17417690 None:intergenic
GAAATCTGTGCACAAGAAAA+AGG 0.325466 7.1:+17418517 MS.gene017693:CDS
TGATGCATTATGCTACATTA+AGG 0.329648 7.1:+17419417 MS.gene017693:CDS
GCAGTGACTTTCTTCTGAAC+AGG 0.349419 7.1:-17418437 None:intergenic
GCTGAGGCAGCAAGCATTGA+TGG 0.393892 7.1:-17419446 None:intergenic
GGTAGCAGAAGTTTCTTTGC+CGG 0.395605 7.1:-17419671 None:intergenic
CTCATCCTCTCATTTATCTC+AGG 0.404632 7.1:-17418989 None:intergenic
TCAATAACTTCCACAGGCTT+AGG 0.404728 7.1:-17418464 None:intergenic
CAACTGTTCTTCGGAGTAAC+CGG 0.407928 7.1:-17419534 None:intergenic
CCATCCTAGGAAAGCTTGAA+TGG 0.408581 7.1:+17419269 MS.gene017693:CDS
CAGAAGAAGAACGGTGCAGC+AGG 0.408866 7.1:+17418054 MS.gene017693:CDS
GCTCCTCCTGTTGTTGCTGA+TGG 0.409185 7.1:+17418374 MS.gene017693:CDS
TCAATGTCAACAATCTCCTT+TGG 0.409201 7.1:-17418749 None:intergenic
TATGTTGATTGTGAGATAAA+GGG 0.409760 7.1:-17419071 None:intergenic
CATCAAAGTATGAAGAAATC+TGG 0.422694 7.1:+17419170 MS.gene017693:CDS
AGCAGTTGCTGAAAACAATA+AGG 0.423523 7.1:+17418206 MS.gene017693:CDS
TGCTGTTGCCGCGCTTCCAC+CGG 0.426291 7.1:+17419652 MS.gene017693:CDS
AACTGCTGCTGCTTGTGCAT+TGG 0.426689 7.1:-17418190 None:intergenic
TTACTCCGAAGAACAGTTGA+TGG 0.428240 7.1:+17419538 MS.gene017693:CDS
TGAAGTAAGTTCTGAAGAAA+AGG 0.429447 7.1:+17418484 MS.gene017693:CDS
GTCAAGAAGGGAACTTCAAT+TGG 0.435390 7.1:+17419123 MS.gene017693:CDS
TCACAATCAACATAGTTGAT+AGG 0.445143 7.1:+17419080 MS.gene017693:CDS
TTTCACTCAGGTGCTGAGAA+TGG 0.447293 7.1:+17419584 MS.gene017693:CDS
TGTTATAGGTGATGCTGCCT+TGG 0.451586 7.1:+17418017 MS.gene017693:intron
CCATTCAAGCTTTCCTAGGA+TGG 0.453248 7.1:-17419269 None:intergenic
AGAAGGGAACTTCAATTGGT+TGG 0.459265 7.1:+17419127 MS.gene017693:CDS
CTGTTGTTTCCCTCCTCCCA+AGG 0.460174 7.1:-17418034 None:intergenic
TGTTGTTGTTGGTGAACAAT+GGG 0.462538 7.1:-17417679 None:intergenic
GATGGATTGTGCTAGGTTGT+TGG 0.467847 7.1:+17419556 MS.gene017693:CDS
CATTGAGCAAGACTCCTGTT+TGG 0.470579 7.1:+17419489 MS.gene017693:CDS
TTGTTGTTGTTGGTGAACAA+TGG 0.480167 7.1:-17417680 None:intergenic
AAGTCCATTCAAGCTTTCCT+AGG 0.481341 7.1:-17419273 None:intergenic
GGTGATGCTGCCTTGGGAGG+AGG 0.482861 7.1:+17418024 MS.gene017693:intron
AGGAATACTCATTGATTGGC+TGG 0.482890 7.1:+17419012 MS.gene017693:CDS
TTGAGTGTCTCATTCCAAAC+AGG 0.483773 7.1:-17419503 None:intergenic
CTGTCAACCTTGTGTCAAGA+AGG 0.491215 7.1:+17419110 MS.gene017693:CDS
TGAGAGGAATACTCATTGAT+TGG 0.498998 7.1:+17419008 MS.gene017693:CDS
CTTACTTCAATAACTTCCAC+AGG 0.506470 7.1:-17418470 None:intergenic
GAAGAAGAACGGTGCAGCAG+GGG 0.508581 7.1:+17418056 MS.gene017693:CDS
GCAACTCCATCAGCAACAAC+AGG 0.508824 7.1:-17418380 None:intergenic
ACAATCCATCAACTGTTCTT+CGG 0.510480 7.1:-17419543 None:intergenic
TCTGCTACCTGCTGCTGTGT+AGG 0.513893 7.1:+17419685 MS.gene017693:CDS
ACAACAGGAGGAGCAGGTCC+AGG 0.526077 7.1:-17418365 None:intergenic
GTGATGCTGCCTTGGGAGGA+GGG 0.530719 7.1:+17418025 MS.gene017693:CDS
AAGAACGGTGCAGCAGGGGA+AGG 0.535783 7.1:+17418060 MS.gene017693:CDS
AAACGAACCAGGAACACAAA+AGG 0.537440 7.1:-17419310 None:intergenic
GTTATAGGTGATGCTGCCTT+GGG 0.538221 7.1:+17418018 MS.gene017693:intron
GAGAGAACCTACACAGCAGC+AGG 0.545039 7.1:-17419692 None:intergenic
CAATATCAAGAAGTGGTCTA+CGG 0.545242 7.1:-17418089 None:intergenic
TCAGCAACAACAGGAGGAGC+AGG 0.545915 7.1:-17418371 None:intergenic
AGTGGCTAGAAGAGTGGTGG+TGG 0.553511 7.1:+17418406 MS.gene017693:CDS
TTGACACAAGGTTGACAGCA+AGG 0.554809 7.1:-17419105 None:intergenic
ACGGTGCAGCAGGGGAAGGA+AGG 0.557061 7.1:+17418064 MS.gene017693:CDS
GCTTGTGTCAATGTGGCACC+TGG 0.568366 7.1:+17418347 MS.gene017693:CDS
AGCCAAATCGCCCTGTCACA+AGG 0.571983 7.1:+17418145 MS.gene017693:CDS
GAGATTGTTGACATTGATGC+TGG 0.574052 7.1:+17418755 MS.gene017693:CDS
TGCTGATGGAGTTGCAGCAG+TGG 0.577732 7.1:+17418388 MS.gene017693:CDS
AACAGTTGATGGATTGTGCT+AGG 0.577876 7.1:+17419549 MS.gene017693:CDS
TGCAGCAGTGGCTAGAAGAG+TGG 0.581805 7.1:+17418400 MS.gene017693:CDS
TTTCTTTGCCGGTGGAAGCG+CGG 0.582062 7.1:-17419660 None:intergenic
AAGCCGTCCACATGATTACA+TGG 0.589639 7.1:+17418958 MS.gene017693:CDS
TCATGAACAGATTCTCGTCA+TGG 0.593660 7.1:+17419240 MS.gene017693:intron
ATAGGTGATGCTGCCTTGGG+AGG 0.594991 7.1:+17418021 MS.gene017693:intron
TGTCCTCACTGCTAGAAGCA+AGG 0.595514 7.1:+17418583 MS.gene017693:CDS
GAAGTTCCCTTCTTGACACA+AGG 0.595803 7.1:-17419117 None:intergenic
AAGTACTCTGATCCTCAGAA+AGG 0.596937 7.1:+17419629 MS.gene017693:CDS
GAGACACTCAAGATGCATAC+CGG 0.598392 7.1:+17419515 MS.gene017693:CDS
GTCATGGAGAAAACCATCCT+AGG 0.598998 7.1:+17419256 MS.gene017693:CDS
AGCAGAAGTTTCTTTGCCGG+TGG 0.599208 7.1:-17419668 None:intergenic
CACTGCAAAACCTAAGCCTG+TGG 0.603311 7.1:+17418454 MS.gene017693:CDS
CCTTGCTGCATAGACTGCTG+AGG 0.603952 7.1:-17419462 None:intergenic
TGGAATCAGTGCCATGCTGA+TGG 0.608887 7.1:+17419147 MS.gene017693:CDS
GAGATAAATGAGAGGATGAG+AGG 0.614173 7.1:+17418992 MS.gene017693:CDS
TGCGAGTCCATGTAATCATG+TGG 0.618416 7.1:-17418965 None:intergenic
ACCAGGAACACAAAAGGTGT+CGG 0.622367 7.1:-17419304 None:intergenic
TTTCTTCTGAACAGGTTTAG+GGG 0.626802 7.1:-17418429 None:intergenic
AGAAGAAGAACGGTGCAGCA+GGG 0.627002 7.1:+17418055 MS.gene017693:CDS
AGTCCATGTAATCATGTGGA+CGG 0.628216 7.1:-17418961 None:intergenic
ATACTTTGATGCCATCAGCA+TGG 0.630020 7.1:-17419158 None:intergenic
ACAAAGTCATTAACCTCAGG+TGG 0.630280 7.1:-17419193 None:intergenic
ACATTTCCAATATCAAGAAG+TGG 0.631314 7.1:-17418096 None:intergenic
CGCAACCTGAGATAAATGAG+AGG 0.636305 7.1:+17418984 MS.gene017693:CDS
TGTCAACCTTGTGTCAAGAA+GGG 0.639776 7.1:+17419111 MS.gene017693:CDS
GGGAAACAACAGAAGAAGAA+CGG 0.643525 7.1:+17418045 MS.gene017693:CDS
GCGGCAACAGCACCTTTCTG+AGG 0.644637 7.1:-17419641 None:intergenic
ACTCCATCAGCAACAACAGG+AGG 0.651848 7.1:-17418377 None:intergenic
CCTCAGCAGTCTATGCAGCA+AGG 0.660855 7.1:+17419462 MS.gene017693:CDS
TGCTGAGAATGGAAAGCTGA+AGG 0.663287 7.1:+17419595 MS.gene017693:CDS
TGAAGAAATCTGGCCACCTG+AGG 0.663492 7.1:+17419180 MS.gene017693:CDS
TGGTTTGACTAACAAACCAA+AGG 0.666669 7.1:+17418733 MS.gene017693:CDS
GAAACAAGCTTGTGTCAATG+TGG 0.703443 7.1:+17418340 MS.gene017693:intron
AGCAGTGGCTAGAAGAGTGG+TGG 0.705939 7.1:+17418403 MS.gene017693:CDS
CAAGTTCTACAAGATAGTTG+AGG 0.706527 7.1:+17418826 MS.gene017693:CDS
AAACCTTGCTTCTAGCAGTG+AGG 0.715110 7.1:-17418586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTCGATTTTTTA+GGG + chr7.1:17417900-17417919 MS.gene017693:intron 15.0%
!!! TTAAAAAGTTTCGATTTTTT+AGG + chr7.1:17417899-17417918 MS.gene017693:intron 15.0%
!!! ACTTTTTAAGATTTATCATC+TGG - chr7.1:17417888-17417907 None:intergenic 20.0%
!!! CTTTTTAAGATTTATCATCT+GGG - chr7.1:17417887-17417906 None:intergenic 20.0%
!!! TTTATGGTTTTATTTATCCT+GGG + chr7.1:17417744-17417763 MS.gene017693:intron 20.0%
! ACTTTGAGTAAAATAGTTTC+TGG + chr7.1:17417793-17417812 MS.gene017693:intron 25.0%
! CTTTGAGTAAAATAGTTTCT+GGG + chr7.1:17417794-17417813 MS.gene017693:intron 25.0%
! TTGCATCAAATCTAGTAAAA+GGG + chr7.1:17417925-17417944 MS.gene017693:intron 25.0%
! TTTGCATCAAATCTAGTAAA+AGG + chr7.1:17417924-17417943 MS.gene017693:intron 25.0%
!! ATTCTCTTTTACATGTTCTT+TGG + chr7.1:17418670-17418689 MS.gene017693:intron 25.0%
!! TATGTTGATTGTGAGATAAA+GGG - chr7.1:17419074-17419093 None:intergenic 25.0%
!!! CTTCAATCATTGATTCTTTA+TGG + chr7.1:17417728-17417747 MS.gene017693:intron 25.0%
!!! CTTTATGGTTTTATTTATCC+TGG + chr7.1:17417743-17417762 MS.gene017693:intron 25.0%
!!! TCTTTTTTGGATTTTGTGTT+TGG + chr7.1:17417954-17417973 MS.gene017693:intron 25.0%
!!! TGATGATTATTTTCTGAGAT+TGG + chr7.1:17418290-17418309 MS.gene017693:intron 25.0%
ACATTTCCAATATCAAGAAG+TGG - chr7.1:17418099-17418118 None:intergenic 30.0%
ATTGAAAGATCTTGCAAATC+TGG + chr7.1:17417847-17417866 MS.gene017693:intron 30.0%
CACAAACAAACATCAAAAAC+AGG - chr7.1:17417994-17418013 None:intergenic 30.0%
CATCAAAGTATGAAGAAATC+TGG + chr7.1:17419170-17419189 MS.gene017693:CDS 30.0%
GTTTGTTTGTGCAATGTTAT+AGG + chr7.1:17418003-17418022 MS.gene017693:intron 30.0%
TCACAATCAACATAGTTGAT+AGG + chr7.1:17419080-17419099 MS.gene017693:CDS 30.0%
TGATGCATTATGCTACATTA+AGG + chr7.1:17419417-17419436 MS.gene017693:CDS 30.0%
TTGAAAGATCTTGCAAATCT+GGG + chr7.1:17417848-17417867 MS.gene017693:intron 30.0%
! CTATGTTGATTGTGAGATAA+AGG - chr7.1:17419075-17419094 None:intergenic 30.0%
! TGTTCTTTTCCTGTTCTTTT+AGG + chr7.1:17418703-17418722 MS.gene017693:intron 30.0%
!! TGAAGTAAGTTCTGAAGAAA+AGG + chr7.1:17418484-17418503 MS.gene017693:CDS 30.0%
!!! AAAAGGGTCTTGTTCTTTTT+TGG + chr7.1:17417941-17417960 MS.gene017693:intron 30.0%
ACAATCCATCAACTGTTCTT+CGG - chr7.1:17419546-17419565 None:intergenic 35.0%
ACTTTCTTCTGAACAGGTTT+AGG - chr7.1:17418434-17418453 None:intergenic 35.0%
AGAAAACACAAACAAACCTC+TGG - chr7.1:17417710-17417729 None:intergenic 35.0%
AGAACAAAAACATTGAACCC+AGG - chr7.1:17417764-17417783 None:intergenic 35.0%
AGCAGTTGCTGAAAACAATA+AGG + chr7.1:17418206-17418225 MS.gene017693:CDS 35.0%
ATTGTGAGATAAAGGGTTTC+AGG - chr7.1:17419067-17419086 None:intergenic 35.0%
CAAGTTCTACAAGATAGTTG+AGG + chr7.1:17418826-17418845 MS.gene017693:CDS 35.0%
CAATATCAAGAAGTGGTCTA+CGG - chr7.1:17418092-17418111 None:intergenic 35.0%
CTTACTTCAATAACTTCCAC+AGG - chr7.1:17418473-17418492 None:intergenic 35.0%
CTTTCTTCTGAACAGGTTTA+GGG - chr7.1:17418433-17418452 None:intergenic 35.0%
GAAAACACAAACAAACCTCT+GGG - chr7.1:17417709-17417728 None:intergenic 35.0%
GAAATCTGTGCACAAGAAAA+AGG + chr7.1:17418517-17418536 MS.gene017693:CDS 35.0%
GGAAATGTTGTCACACTAAA+AGG + chr7.1:17418111-17418130 MS.gene017693:CDS 35.0%
TCAATGTCAACAATCTCCTT+TGG - chr7.1:17418752-17418771 None:intergenic 35.0%
TGAGAGGAATACTCATTGAT+TGG + chr7.1:17419008-17419027 MS.gene017693:CDS 35.0%
TGGTTTGACTAACAAACCAA+AGG + chr7.1:17418733-17418752 MS.gene017693:CDS 35.0%
TTTCTTCTGAACAGGTTTAG+GGG - chr7.1:17418432-17418451 None:intergenic 35.0%
! GAGTAAAATAGTTTCTGGGT+TGG + chr7.1:17417798-17417817 MS.gene017693:intron 35.0%
! TGTTGTTGTTGGTGAACAAT+GGG - chr7.1:17417682-17417701 None:intergenic 35.0%
! TTGTTGTTGTTGGTGAACAA+TGG - chr7.1:17417683-17417702 None:intergenic 35.0%
AAACGAACCAGGAACACAAA+AGG - chr7.1:17419313-17419332 None:intergenic 40.0%
AAGTACTCTGATCCTCAGAA+AGG + chr7.1:17419629-17419648 MS.gene017693:CDS 40.0%
AAGTCCATTCAAGCTTTCCT+AGG - chr7.1:17419276-17419295 None:intergenic 40.0%
ACAAAGTCATTAACCTCAGG+TGG - chr7.1:17419196-17419215 None:intergenic 40.0%
AGAAGGGAACTTCAATTGGT+TGG + chr7.1:17419127-17419146 MS.gene017693:CDS 40.0%
AGTCCATGTAATCATGTGGA+CGG - chr7.1:17418964-17418983 None:intergenic 40.0%
ATACTTTGATGCCATCAGCA+TGG - chr7.1:17419161-17419180 None:intergenic 40.0%
CACAAAAACTCCTTGTGACA+GGG - chr7.1:17418158-17418177 None:intergenic 40.0%
CACACAAAGTCATTAACCTC+AGG - chr7.1:17419199-17419218 None:intergenic 40.0%
CGTAGACCACTTCTTGATAT+TGG + chr7.1:17418090-17418109 MS.gene017693:CDS 40.0%
CTCATCCTCTCATTTATCTC+AGG - chr7.1:17418992-17419011 None:intergenic 40.0%
GAAACAAGCTTGTGTCAATG+TGG + chr7.1:17418340-17418359 MS.gene017693:intron 40.0%
GAGATAAATGAGAGGATGAG+AGG + chr7.1:17418992-17419011 MS.gene017693:CDS 40.0%
GAGATTGTTGACATTGATGC+TGG + chr7.1:17418755-17418774 MS.gene017693:CDS 40.0%
GGGAAACAACAGAAGAAGAA+CGG + chr7.1:17418045-17418064 MS.gene017693:CDS 40.0%
GTCAAGAAGGGAACTTCAAT+TGG + chr7.1:17419123-17419142 MS.gene017693:CDS 40.0%
TCAATAACTTCCACAGGCTT+AGG - chr7.1:17418467-17418486 None:intergenic 40.0%
TCATGAACAGATTCTCGTCA+TGG + chr7.1:17419240-17419259 MS.gene017693:intron 40.0%
TGTCAACCTTGTGTCAAGAA+GGG + chr7.1:17419111-17419130 MS.gene017693:CDS 40.0%
TTACTCCGAAGAACAGTTGA+TGG + chr7.1:17419538-17419557 MS.gene017693:CDS 40.0%
TTGAGTGTCTCATTCCAAAC+AGG - chr7.1:17419506-17419525 None:intergenic 40.0%
! AGGAATACTCATTGATTGGC+TGG + chr7.1:17419012-17419031 MS.gene017693:CDS 40.0%
! AGTGCGTGATGTTTTCTTCT+TGG - chr7.1:17418555-17418574 None:intergenic 40.0%
! GCTCATTTTCTCTCTGAGTT+GGG + chr7.1:17419392-17419411 MS.gene017693:intron 40.0%
!! AACAGTTGATGGATTGTGCT+AGG + chr7.1:17419549-17419568 MS.gene017693:CDS 40.0%
!! CTAGAAGCAAGGTTTGTTGT+TGG + chr7.1:17418594-17418613 MS.gene017693:intron 40.0%
!! TTGTTGGTGAGTTTTCACTC+AGG + chr7.1:17419572-17419591 MS.gene017693:CDS 40.0%
AAACCTTGCTTCTAGCAGTG+AGG - chr7.1:17418589-17418608 None:intergenic 45.0%
AAGCCGTCCACATGATTACA+TGG + chr7.1:17418958-17418977 MS.gene017693:CDS 45.0%
CAACAACAACAACAACCCAG+AGG + chr7.1:17417691-17417710 MS.gene017693:CDS 45.0%
CAACTGTTCTTCGGAGTAAC+CGG - chr7.1:17419537-17419556 None:intergenic 45.0%
CAAGGGGATTTCGAGAATGA+TGG + chr7.1:17419370-17419389 MS.gene017693:intron 45.0%
CACATGCAGCCTAAAAGAAC+AGG - chr7.1:17418715-17418734 None:intergenic 45.0%
CATTGAGCAAGACTCCTGTT+TGG + chr7.1:17419489-17419508 MS.gene017693:CDS 45.0%
CCATCCTAGGAAAGCTTGAA+TGG + chr7.1:17419269-17419288 MS.gene017693:CDS 45.0%
CCATTCAAGCTTTCCTAGGA+TGG - chr7.1:17419272-17419291 None:intergenic 45.0%
CGCAACCTGAGATAAATGAG+AGG + chr7.1:17418984-17419003 MS.gene017693:CDS 45.0%
CTGCAGTTCCTTCTGATCAA+GGG + chr7.1:17419353-17419372 MS.gene017693:intron 45.0%
CTGTCAACCTTGTGTCAAGA+AGG + chr7.1:17419110-17419129 MS.gene017693:CDS 45.0%
GAAGTTCCCTTCTTGACACA+AGG - chr7.1:17419120-17419139 None:intergenic 45.0%
GACTGTAAGCTCTATCTGAG+AGG - chr7.1:17419222-17419241 None:intergenic 45.0%
GAGACACTCAAGATGCATAC+CGG + chr7.1:17419515-17419534 MS.gene017693:CDS 45.0%
GCACAAAAACTCCTTGTGAC+AGG - chr7.1:17418159-17418178 None:intergenic 45.0%
GCAGTGACTTTCTTCTGAAC+AGG - chr7.1:17418440-17418459 None:intergenic 45.0%
GGTAGCAGAAGTTTCTTTGC+CGG - chr7.1:17419674-17419693 None:intergenic 45.0%
GTCATGGAGAAAACCATCCT+AGG + chr7.1:17419256-17419275 MS.gene017693:CDS 45.0%
GTTATAGGTGATGCTGCCTT+GGG + chr7.1:17418018-17418037 MS.gene017693:intron 45.0%
TCGAAATCCCCTTGATCAGA+AGG - chr7.1:17419364-17419383 None:intergenic 45.0%
TCTGCAGTTCCTTCTGATCA+AGG + chr7.1:17419352-17419371 MS.gene017693:intron 45.0%
TGCAGTTCCTTCTGATCAAG+GGG + chr7.1:17419354-17419373 MS.gene017693:intron 45.0%
TGCGAGTCCATGTAATCATG+TGG - chr7.1:17418968-17418987 None:intergenic 45.0%
TGCTGAGAATGGAAAGCTGA+AGG + chr7.1:17419595-17419614 MS.gene017693:CDS 45.0%
TGTTATAGGTGATGCTGCCT+TGG + chr7.1:17418017-17418036 MS.gene017693:intron 45.0%
TTGACACAAGGTTGACAGCA+AGG - chr7.1:17419108-17419127 None:intergenic 45.0%
! ACCAGGAACACAAAAGGTGT+CGG - chr7.1:17419307-17419326 None:intergenic 45.0%
! CTCTGGGTTGTTGTTGTTGT+TGG - chr7.1:17417693-17417712 None:intergenic 45.0%
! CTGTTCTTTTAGGCTGCATG+TGG + chr7.1:17418713-17418732 MS.gene017693:intron 45.0%
! GGCTCATTTTCTCTCTGAGT+TGG + chr7.1:17419391-17419410 MS.gene017693:intron 45.0%
! GTTCCTGGTTCGTTTCATCA+AGG + chr7.1:17419318-17419337 MS.gene017693:intron 45.0%
!! GATGGATTGTGCTAGGTTGT+TGG + chr7.1:17419556-17419575 MS.gene017693:CDS 45.0%
!! TTTCACTCAGGTGCTGAGAA+TGG + chr7.1:17419584-17419603 MS.gene017693:CDS 45.0%
ACTCCATCAGCAACAACAGG+AGG - chr7.1:17418380-17418399 None:intergenic 50.0%
AGAAGAAGAACGGTGCAGCA+GGG + chr7.1:17418055-17418074 MS.gene017693:CDS 50.0%
AGCAGAAGTTTCTTTGCCGG+TGG - chr7.1:17419671-17419690 None:intergenic 50.0%
CACTGCAAAACCTAAGCCTG+TGG + chr7.1:17418454-17418473 MS.gene017693:CDS 50.0%
CAGCCTTGATGAAACGAACC+AGG - chr7.1:17419324-17419343 None:intergenic 50.0%
GCAACTCCATCAGCAACAAC+AGG - chr7.1:17418383-17418402 None:intergenic 50.0%
TGAAGAAATCTGGCCACCTG+AGG + chr7.1:17419180-17419199 MS.gene017693:CDS 50.0%
TGGAATCAGTGCCATGCTGA+TGG + chr7.1:17419147-17419166 MS.gene017693:CDS 50.0%
TGTCCTCACTGCTAGAAGCA+AGG + chr7.1:17418583-17418602 MS.gene017693:CDS 50.0%
! AACTGCTGCTGCTTGTGCAT+TGG - chr7.1:17418193-17418212 None:intergenic 50.0%
AGCAGTGGCTAGAAGAGTGG+TGG + chr7.1:17418403-17418422 MS.gene017693:CDS 55.0%
AGCCAAATCGCCCTGTCACA+AGG + chr7.1:17418145-17418164 MS.gene017693:CDS 55.0%
AGTGGCTAGAAGAGTGGTGG+TGG + chr7.1:17418406-17418425 MS.gene017693:CDS 55.0%
ATAGGTGATGCTGCCTTGGG+AGG + chr7.1:17418021-17418040 MS.gene017693:intron 55.0%
CAGAAGAAGAACGGTGCAGC+AGG + chr7.1:17418054-17418073 MS.gene017693:CDS 55.0%
CCTCAGCAGTCTATGCAGCA+AGG + chr7.1:17419462-17419481 MS.gene017693:CDS 55.0%
CCTTGCTGCATAGACTGCTG+AGG - chr7.1:17419465-17419484 None:intergenic 55.0%
CTCCTTGTGACAGGGCGATT+TGG - chr7.1:17418150-17418169 None:intergenic 55.0%
GAAGAAGAACGGTGCAGCAG+GGG + chr7.1:17418056-17418075 MS.gene017693:CDS 55.0%
GCTCCTCCTGTTGTTGCTGA+TGG + chr7.1:17418374-17418393 MS.gene017693:CDS 55.0%
GCTTGTGTCAATGTGGCACC+TGG + chr7.1:17418347-17418366 MS.gene017693:CDS 55.0%
TCAGCAACAACAGGAGGAGC+AGG - chr7.1:17418374-17418393 None:intergenic 55.0%
TGCAGCAGTGGCTAGAAGAG+TGG + chr7.1:17418400-17418419 MS.gene017693:CDS 55.0%
TGCTGATGGAGTTGCAGCAG+TGG + chr7.1:17418388-17418407 MS.gene017693:CDS 55.0%
TTTCTTTGCCGGTGGAAGCG+CGG - chr7.1:17419663-17419682 None:intergenic 55.0%
! GCCGACACCTTTTGTGTTCC+TGG + chr7.1:17419303-17419322 MS.gene017693:CDS 55.0%
!! CTGTTGTTTCCCTCCTCCCA+AGG - chr7.1:17418037-17418056 None:intergenic 55.0%
!! GCTGAGGCAGCAAGCATTGA+TGG - chr7.1:17419449-17419468 None:intergenic 55.0%
AAGAACGGTGCAGCAGGGGA+AGG + chr7.1:17418060-17418079 MS.gene017693:CDS 60.0%
ACAACAGGAGGAGCAGGTCC+AGG - chr7.1:17418368-17418387 None:intergenic 60.0%
GCGGCAACAGCACCTTTCTG+AGG - chr7.1:17419644-17419663 None:intergenic 60.0%
GTGATGCTGCCTTGGGAGGA+GGG + chr7.1:17418025-17418044 MS.gene017693:CDS 60.0%
ACGGTGCAGCAGGGGAAGGA+AGG + chr7.1:17418064-17418083 MS.gene017693:CDS 65.0%
GGTGATGCTGCCTTGGGAGG+AGG + chr7.1:17418024-17418043 MS.gene017693:intron 65.0%
TGCTGTTGCCGCGCTTCCAC+CGG + chr7.1:17419652-17419671 MS.gene017693:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 17417667 17419706 17417667 ID=MS.gene017693
chr7.1 mRNA 17417667 17419706 17417667 ID=MS.gene017693.t1;Parent=MS.gene017693
chr7.1 exon 17417667 17417712 17417667 ID=MS.gene017693.t1.exon1;Parent=MS.gene017693.t1
chr7.1 CDS 17417667 17417712 17417667 ID=cds.MS.gene017693.t1;Parent=MS.gene017693.t1
chr7.1 exon 17418025 17418227 17418025 ID=MS.gene017693.t1.exon2;Parent=MS.gene017693.t1
chr7.1 CDS 17418025 17418227 17418025 ID=cds.MS.gene017693.t1;Parent=MS.gene017693.t1
chr7.1 exon 17418341 17418604 17418341 ID=MS.gene017693.t1.exon3;Parent=MS.gene017693.t1
chr7.1 CDS 17418341 17418604 17418341 ID=cds.MS.gene017693.t1;Parent=MS.gene017693.t1
chr7.1 exon 17418725 17418847 17418725 ID=MS.gene017693.t1.exon4;Parent=MS.gene017693.t1
chr7.1 CDS 17418725 17418847 17418725 ID=cds.MS.gene017693.t1;Parent=MS.gene017693.t1
chr7.1 exon 17418953 17419201 17418953 ID=MS.gene017693.t1.exon5;Parent=MS.gene017693.t1
chr7.1 CDS 17418953 17419201 17418953 ID=cds.MS.gene017693.t1;Parent=MS.gene017693.t1
chr7.1 exon 17419250 17419324 17419250 ID=MS.gene017693.t1.exon6;Parent=MS.gene017693.t1
chr7.1 CDS 17419250 17419324 17419250 ID=cds.MS.gene017693.t1;Parent=MS.gene017693.t1
chr7.1 exon 17419410 17419706 17419410 ID=MS.gene017693.t1.exon7;Parent=MS.gene017693.t1
chr7.1 CDS 17419410 17419706 17419410 ID=cds.MS.gene017693.t1;Parent=MS.gene017693.t1
Gene Sequence

>MS.gene017693

ATGGCTTCAAGACCCATTGTTCACCAACAACAACAACAACCCAGAGGTTTGTTTGTGTTTTCTTCAATCATTGATTCTTTATGGTTTTATTTATCCTGGGTTCAATGTTTTTGTTCTAAGATTGAAACTTTGAGTAAAATAGTTTCTGGGTTGGTTTCTTTTTCATCTATCTCTTCACTGATTGAAAGATCTTGCAAATCTGGGTTTTTGAAAGAAGCCCAGATGATAAATCTTAAAAAGTTTCGATTTTTTAGGGTTTTGCATCAAATCTAGTAAAAGGGTCTTGTTCTTTTTTGGATTTTGTGTTTGGATCGAAATCTAGAACCTGTTTTTGATGTTTGTTTGTGCAATGTTATAGGTGATGCTGCCTTGGGAGGAGGGAAACAACAGAAGAAGAACGGTGCAGCAGGGGAAGGAAGGAACCGTAGACCACTTCTTGATATTGGAAATGTTGTCACACTAAAAGGTGTCGAAGTTAAGCCAAATCGCCCTGTCACAAGGAGTTTTTGTGCACAATTACTTGCCAATGCACAAGCAGCAGCAGTTGCTGAAAACAATAAGGTTAGTGATGATTATTTGATTAATCTTTCTTTTCTTTCATTATTTAATTTAATGTTTCATTGTGATGATTATTTTCTGAGATTGGTTTTTTTGTGTTTGATTTGAAATTGAAGAAACAAGCTTGTGTCAATGTGGCACCTGGACCTGCTCCTCCTGTTGTTGCTGATGGAGTTGCAGCAGTGGCTAGAAGAGTGGTGGTGGCCCCTAAACCTGTTCAGAAGAAAGTCACTGCAAAACCTAAGCCTGTGGAAGTTATTGAAGTAAGTTCTGAAGAAAAGGACAATGAAGAGAAATCTGTGCACAAGAAAAAGGAAGAAGTTCATTCCAAGAAGAAAACATCACGCACTCTTTCTTCTGTCCTCACTGCTAGAAGCAAGGTTTGTTGTTGGTTATGTTGTTAAGAATTAATCAAACAAAGAAGCATGTTATGTTGTTAGATTGAATTCTCTTTTACATGTTCTTTGGTTTGTTTACATGTTCTTTTCCTGTTCTTTTAGGCTGCATGTGGTTTGACTAACAAACCAAAGGAGATTGTTGACATTGATGCTGGTGATGCTAACAATGAGTTAGCTGCTGTTGAATATCTTGAAGACATATACAAGTTCTACAAGATAGTTGAGGTAACAATAACAAACATGACTTTAATTTACTTTTCATTCTATATGTTTTTGTTTTGTGTCTGATGTATTGTTCTTTATTGCTTGTGTATGTGTTGAATGATTCAGAATGAAAGCCGTCCACATGATTACATGGACTCGCAACCTGAGATAAATGAGAGGATGAGAGGAATACTCATTGATTGGCTGGTAGATGTTCACTCAAAATTCGAACTTTCACCTGAAACCCTTTATCTCACAATCAACATAGTTGATAGGTTCCTTGCTGTCAACCTTGTGTCAAGAAGGGAACTTCAATTGGTTGGAATCAGTGCCATGCTGATGGCATCAAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTGTGCCTCTCAGATAGAGCTTACAGTCATGAACAGATTCTCGTCATGGAGAAAACCATCCTAGGAAAGCTTGAATGGACTTTGACTGTGCCGACACCTTTTGTGTTCCTGGTTCGTTTCATCAAGGCTGCATCAGTATCTGCAGTTCCTTCTGATCAAGGGGATTTCGAGAATGATGGCTCATTTTCTCTCTGAGTTGGGAATGATGCATTATGCTACATTAAGGTATTGTCCATCAATGCTTGCTGCCTCAGCAGTCTATGCAGCAAGGAGCACATTGAGCAAGACTCCTGTTTGGAATGAGACACTCAAGATGCATACCGGTTACTCCGAAGAACAGTTGATGGATTGTGCTAGGTTGTTGGTGAGTTTTCACTCAGGTGCTGAGAATGGAAAGCTGAAGGTTGTGTATAAGAAGTACTCTGATCCTCAGAAAGGTGCTGTTGCCGCGCTTCCACCGGCAAAGAAACTTCTGCTACCTGCTGCTGTGTAG
Protein sequence

>MS.gene017693.t1

MASRPIVHQQQQQPRGDAALGGGKQQKKNGAAGEGRNRRPLLDIGNVVTLKGVEVKPNRPVTRSFCAQLLANAQAAAVAENNKKQACVNVAPGPAPPVVADGVAAVARRVVVAPKPVQKKVTAKPKPVEVIEVSSEEKDNEEKSVHKKKEEVHSKKKTSRTLSSVLTARSKAACGLTNKPKEIVDIDAGDANNELAAVEYLEDIYKFYKIVENESRPHDYMDSQPEINERMRGILIDWLVDVHSKFELSPETLYLTINIVDRFLAVNLVSRRELQLVGISAMLMASKYEEIWPPEILVMEKTILGKLEWTLTVPTPFVFLLGMMHYATLRYCPSMLAASAVYAARSTLSKTPVWNETLKMHTGYSEEQLMDCARLLVSFHSGAENGKLKVVYKKYSDPQKGAVAALPPAKKLLLPAAV